2024-11-08T12:16:36,900 Created temporary directory: /tmp/pip-build-tracker-43xphsdt 2024-11-08T12:16:36,901 Initialized build tracking at /tmp/pip-build-tracker-43xphsdt 2024-11-08T12:16:36,901 Created build tracker: /tmp/pip-build-tracker-43xphsdt 2024-11-08T12:16:36,902 Entered build tracker: /tmp/pip-build-tracker-43xphsdt 2024-11-08T12:16:36,903 Created temporary directory: /tmp/pip-wheel-jzq8g_fa 2024-11-08T12:16:36,907 Created temporary directory: /tmp/pip-ephem-wheel-cache-89eq923g 2024-11-08T12:16:36,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-08T12:16:36,953 2 location(s) to search for versions of ont-spectre: 2024-11-08T12:16:36,953 * https://pypi.org/simple/ont-spectre/ 2024-11-08T12:16:36,953 * https://www.piwheels.org/simple/ont-spectre/ 2024-11-08T12:16:36,954 Fetching project page and analyzing links: https://pypi.org/simple/ont-spectre/ 2024-11-08T12:16:36,955 Getting page https://pypi.org/simple/ont-spectre/ 2024-11-08T12:16:36,956 Found index url https://pypi.org/simple/ 2024-11-08T12:16:37,176 Fetched page https://pypi.org/simple/ont-spectre/ as application/vnd.pypi.simple.v1+json 2024-11-08T12:16:37,178 Found link https://files.pythonhosted.org/packages/8c/ac/f5d215a7de78360886138cac41885b9b109419966ec8a9e6ffeb26c08391/ont-spectre-0.2.0.tar.gz (from https://pypi.org/simple/ont-spectre/), version: 0.2.0 2024-11-08T12:16:37,179 Found link https://files.pythonhosted.org/packages/c1/f1/1629482a61c0ee61f830cbcd418e0660c4fd2bbf3c4ba5584e3476ee0bf6/ont_spectre-0.2.1.tar.gz (from https://pypi.org/simple/ont-spectre/), version: 0.2.1 2024-11-08T12:16:37,179 Found link https://files.pythonhosted.org/packages/77/f0/48fb32bd5b1307b5dbeb8c4b514fdc725dff0e3ccf946a4af58d1b7b06fa/ont_spectre-0.2.2.tar.gz (from https://pypi.org/simple/ont-spectre/), version: 0.2.2 2024-11-08T12:16:37,180 Found link https://files.pythonhosted.org/packages/39/98/94dfa3c1cd823453a7aa12b3cd073236eeea90c4ec4881dbc6bb49b84b06/ont_spectre-0.3.0.tar.gz (from https://pypi.org/simple/ont-spectre/) (requires-python:>=3.8), version: 0.3.0 2024-11-08T12:16:37,182 Found link https://files.pythonhosted.org/packages/8b/a0/bc4dfeef8dde1c9733b5093c99d15eb3c7bee0d15474beb6175d331ac116/ont_spectre-0.3.1.tar.gz (from https://pypi.org/simple/ont-spectre/) (requires-python:>=3.8), version: 0.3.1 2024-11-08T12:16:37,183 Found link https://files.pythonhosted.org/packages/f2/b2/c357939b9e91cf692c1c770f55989fadc333d586a877c4b2343bcce75566/ont_spectre-0.3.2.tar.gz (from https://pypi.org/simple/ont-spectre/) (requires-python:>=3.8), version: 0.3.2 2024-11-08T12:16:37,184 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-spectre/ 2024-11-08T12:16:37,184 Getting page https://www.piwheels.org/simple/ont-spectre/ 2024-11-08T12:16:37,186 Found index url https://www.piwheels.org/simple/ 2024-11-08T12:16:37,345 Fetched page https://www.piwheels.org/simple/ont-spectre/ as text/html 2024-11-08T12:16:37,348 Skipping link: No binaries permitted for ont-spectre: https://www.piwheels.org/simple/ont-spectre/ont_spectre-0.3.1-py3-none-any.whl#sha256=8f805f1075f00c232928219bb13d220bff57abd5868f8709b8e971161b5aa1b0 (from https://www.piwheels.org/simple/ont-spectre/) (requires-python:>=3.8) 2024-11-08T12:16:37,349 Skipping link: No binaries permitted for ont-spectre: https://www.piwheels.org/simple/ont-spectre/ont_spectre-0.3.0-py3-none-any.whl#sha256=0b86fe71dbdab4af4ba4e98d223d75d102dccbd4d46938a335bfc7ccd42cfba5 (from https://www.piwheels.org/simple/ont-spectre/) (requires-python:>=3.8) 2024-11-08T12:16:37,349 Skipping link: No binaries permitted for ont-spectre: https://www.piwheels.org/simple/ont-spectre/ont_spectre-0.2.2-py3-none-any.whl#sha256=5232bb16552b99c81c7f9c253aec88f7cbe0ac3d4ec343f78edbf73121cf9c2a (from https://www.piwheels.org/simple/ont-spectre/) 2024-11-08T12:16:37,350 Skipping link: No binaries permitted for ont-spectre: https://www.piwheels.org/simple/ont-spectre/ont_spectre-0.2.1-py3-none-any.whl#sha256=a7f8610fcbbed8148b3c869c141ba7400ba551fb08b1634b12a9d0e611c2e252 (from https://www.piwheels.org/simple/ont-spectre/) 2024-11-08T12:16:37,351 Skipping link: No binaries permitted for ont-spectre: https://www.piwheels.org/simple/ont-spectre/ont_spectre-0.2.0-py3-none-any.whl#sha256=d0ee20985f63f04aeadc55e4657c01a6e65d21eee01ff8ac84abb42bebd14141 (from https://www.piwheels.org/simple/ont-spectre/) 2024-11-08T12:16:37,351 Skipping link: not a file: https://www.piwheels.org/simple/ont-spectre/ 2024-11-08T12:16:37,352 Skipping link: not a file: https://pypi.org/simple/ont-spectre/ 2024-11-08T12:16:37,370 Given no hashes to check 1 links for project 'ont-spectre': discarding no candidates 2024-11-08T12:16:37,371 Collecting ont-spectre==0.3.2 2024-11-08T12:16:37,374 Created temporary directory: /tmp/pip-unpack-yd0xyeww 2024-11-08T12:16:37,589 Downloading ont_spectre-0.3.2.tar.gz (162 kB) 2024-11-08T12:16:37,770 Added ont-spectre==0.3.2 from https://files.pythonhosted.org/packages/f2/b2/c357939b9e91cf692c1c770f55989fadc333d586a877c4b2343bcce75566/ont_spectre-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-43xphsdt' 2024-11-08T12:16:37,772 Running setup.py (path:/tmp/pip-wheel-jzq8g_fa/ont-spectre_00d112829db648c6bd1acc31cc044a54/setup.py) egg_info for package ont-spectre 2024-11-08T12:16:37,773 Created temporary directory: /tmp/pip-pip-egg-info-lbn13pku 2024-11-08T12:16:37,773 Preparing metadata (setup.py): started 2024-11-08T12:16:37,774 Running command python setup.py egg_info 2024-11-08T12:16:38,260 /tmp/pip-wheel-jzq8g_fa/ont-spectre_00d112829db648c6bd1acc31cc044a54/setup.py:5: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-11-08T12:16:38,260 import pkg_resources 2024-11-08T12:16:38,516 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-11-08T12:16:38,516 !! 2024-11-08T12:16:38,518 ******************************************************************************** 2024-11-08T12:16:38,518 Requirements should be satisfied by a PEP 517 installer. 2024-11-08T12:16:38,519 If you are using pip, you can try `pip install --use-pep517`. 2024-11-08T12:16:38,520 ******************************************************************************** 2024-11-08T12:16:38,521 !! 2024-11-08T12:16:38,521 dist.fetch_build_eggs(dist.setup_requires) 2024-11-08T12:16:38,863 running egg_info 2024-11-08T12:16:38,889 creating /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info 2024-11-08T12:16:38,891 writing /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/PKG-INFO 2024-11-08T12:16:38,895 writing dependency_links to /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/dependency_links.txt 2024-11-08T12:16:38,896 writing entry points to /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/entry_points.txt 2024-11-08T12:16:38,898 writing requirements to /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/requires.txt 2024-11-08T12:16:38,899 writing top-level names to /tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/top_level.txt 2024-11-08T12:16:38,901 writing manifest file '/tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/SOURCES.txt' 2024-11-08T12:16:38,991 reading manifest file '/tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/SOURCES.txt' 2024-11-08T12:16:38,993 reading manifest template 'MANIFEST.in' 2024-11-08T12:16:38,994 adding license file 'LICENSE.md' 2024-11-08T12:16:38,998 writing manifest file '/tmp/pip-pip-egg-info-lbn13pku/ont_spectre.egg-info/SOURCES.txt' 2024-11-08T12:16:39,108 Preparing metadata (setup.py): finished with status 'done' 2024-11-08T12:16:39,113 Source in /tmp/pip-wheel-jzq8g_fa/ont-spectre_00d112829db648c6bd1acc31cc044a54 has version 0.3.2, which satisfies requirement ont-spectre==0.3.2 from https://files.pythonhosted.org/packages/f2/b2/c357939b9e91cf692c1c770f55989fadc333d586a877c4b2343bcce75566/ont_spectre-0.3.2.tar.gz 2024-11-08T12:16:39,114 Removed ont-spectre==0.3.2 from https://files.pythonhosted.org/packages/f2/b2/c357939b9e91cf692c1c770f55989fadc333d586a877c4b2343bcce75566/ont_spectre-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-43xphsdt' 2024-11-08T12:16:39,122 Created temporary directory: /tmp/pip-unpack-hw403xa9 2024-11-08T12:16:39,123 Created temporary directory: /tmp/pip-unpack-81a3cy_k 2024-11-08T12:16:39,124 Building wheels for collected packages: ont-spectre 2024-11-08T12:16:39,128 Created temporary directory: /tmp/pip-wheel-m9fvd69n 2024-11-08T12:16:39,128 Building wheel for ont-spectre (setup.py): started 2024-11-08T12:16:39,129 Destination directory: /tmp/pip-wheel-m9fvd69n 2024-11-08T12:16:39,130 Running command python setup.py bdist_wheel 2024-11-08T12:16:39,595 /tmp/pip-wheel-jzq8g_fa/ont-spectre_00d112829db648c6bd1acc31cc044a54/setup.py:5: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-11-08T12:16:39,595 import pkg_resources 2024-11-08T12:16:39,848 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-11-08T12:16:39,849 !! 2024-11-08T12:16:39,850 ******************************************************************************** 2024-11-08T12:16:39,851 Requirements should be satisfied by a PEP 517 installer. 2024-11-08T12:16:39,851 If you are using pip, you can try `pip install --use-pep517`. 2024-11-08T12:16:39,852 ******************************************************************************** 2024-11-08T12:16:39,853 !! 2024-11-08T12:16:39,853 dist.fetch_build_eggs(dist.setup_requires) 2024-11-08T12:16:40,160 running bdist_wheel 2024-11-08T12:16:40,295 running build 2024-11-08T12:16:40,295 running build_py 2024-11-08T12:16:40,326 creating build/lib/spectre 2024-11-08T12:16:40,329 copying spectre/spectreCNV.py -> build/lib/spectre 2024-11-08T12:16:40,331 copying spectre/spectreCNVPopulation.py -> build/lib/spectre 2024-11-08T12:16:40,334 copying spectre/main.py -> build/lib/spectre 2024-11-08T12:16:40,337 copying spectre/__init__.py -> build/lib/spectre 2024-11-08T12:16:40,339 creating build/lib/spectre/plots 2024-11-08T12:16:40,340 copying spectre/plots/plot.py -> build/lib/spectre/plots 2024-11-08T12:16:40,343 copying spectre/plots/__init__.py -> build/lib/spectre/plots 2024-11-08T12:16:40,345 creating build/lib/spectre/util 2024-11-08T12:16:40,346 copying spectre/util/dataAnalyzer.py -> build/lib/spectre/util 2024-11-08T12:16:40,348 copying spectre/util/outputWriter.py -> build/lib/spectre/util 2024-11-08T12:16:40,350 copying spectre/util/vcf_parser.py -> build/lib/spectre/util 2024-11-08T12:16:40,353 copying spectre/util/OSUtil.py -> build/lib/spectre/util 2024-11-08T12:16:40,355 copying spectre/util/cnv_id.py -> build/lib/spectre/util 2024-11-08T12:16:40,356 copying spectre/util/__init__.py -> build/lib/spectre/util 2024-11-08T12:16:40,358 copying spectre/util/mosdepthReader.py -> build/lib/spectre/util 2024-11-08T12:16:40,360 creating build/lib/spectre/analysis 2024-11-08T12:16:40,362 copying spectre/analysis/cnv_metrics.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,364 copying spectre/analysis/call_cnv_AF.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,367 copying spectre/analysis/analysis.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,370 copying spectre/analysis/__init__.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,372 copying spectre/analysis/cnv_candidate.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,374 copying spectre/analysis/coverage_stats.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,376 copying spectre/analysis/call_cnv_coverage.py -> build/lib/spectre/analysis 2024-11-08T12:16:40,379 creating build/lib/spectre/util/metadata 2024-11-08T12:16:40,380 copying spectre/util/metadata/metadataCollector.py -> build/lib/spectre/util/metadata 2024-11-08T12:16:40,383 copying spectre/util/metadata/__init__.py -> build/lib/spectre/util/metadata 2024-11-08T12:16:40,387 creating build/lib/spectre/data 2024-11-08T12:16:40,388 copying spectre/data/hg38_blacklist_v1.0.bed -> build/lib/spectre/data 2024-11-08T12:16:40,394 copying spectre/data/hg19_blacklist_v1.0.bed -> build/lib/spectre/data 2024-11-08T12:16:40,399 copying spectre/data/chm13v2_blacklist_v1.0.bed -> build/lib/spectre/data 2024-11-08T12:16:40,402 copying spectre/data/hg19_metadata.mdr -> build/lib/spectre/data 2024-11-08T12:16:40,406 copying spectre/data/hg38_metadata.mdr -> build/lib/spectre/data 2024-11-08T12:16:40,409 copying spectre/data/chm13v2_metadata.mdr -> build/lib/spectre/data 2024-11-08T12:16:40,441 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-08T12:16:40,441 !! 2024-11-08T12:16:40,442 ******************************************************************************** 2024-11-08T12:16:40,443 Please avoid running ``setup.py`` directly. 2024-11-08T12:16:40,443 Instead, use pypa/build, pypa/installer or other 2024-11-08T12:16:40,444 standards-based tools. 2024-11-08T12:16:40,445 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-08T12:16:40,445 ******************************************************************************** 2024-11-08T12:16:40,446 !! 2024-11-08T12:16:40,447 self.initialize_options() 2024-11-08T12:16:40,469 installing to build/bdist.linux-armv7l/wheel 2024-11-08T12:16:40,469 running install 2024-11-08T12:16:40,494 running install_lib 2024-11-08T12:16:40,521 creating build/bdist.linux-armv7l/wheel 2024-11-08T12:16:40,523 creating build/bdist.linux-armv7l/wheel/spectre 2024-11-08T12:16:40,525 creating build/bdist.linux-armv7l/wheel/spectre/plots 2024-11-08T12:16:40,526 copying build/lib/spectre/plots/plot.py -> build/bdist.linux-armv7l/wheel/./spectre/plots 2024-11-08T12:16:40,528 copying build/lib/spectre/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./spectre/plots 2024-11-08T12:16:40,530 copying build/lib/spectre/spectreCNV.py -> build/bdist.linux-armv7l/wheel/./spectre 2024-11-08T12:16:40,533 creating build/bdist.linux-armv7l/wheel/spectre/util 2024-11-08T12:16:40,534 copying build/lib/spectre/util/dataAnalyzer.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,536 copying build/lib/spectre/util/outputWriter.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,538 copying build/lib/spectre/util/vcf_parser.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,540 copying build/lib/spectre/util/OSUtil.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,542 copying build/lib/spectre/util/cnv_id.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,545 creating build/bdist.linux-armv7l/wheel/spectre/util/metadata 2024-11-08T12:16:40,546 copying build/lib/spectre/util/metadata/metadataCollector.py -> build/bdist.linux-armv7l/wheel/./spectre/util/metadata 2024-11-08T12:16:40,548 copying build/lib/spectre/util/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./spectre/util/metadata 2024-11-08T12:16:40,550 copying build/lib/spectre/util/__init__.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,551 copying build/lib/spectre/util/mosdepthReader.py -> build/bdist.linux-armv7l/wheel/./spectre/util 2024-11-08T12:16:40,554 creating build/bdist.linux-armv7l/wheel/spectre/analysis 2024-11-08T12:16:40,555 copying build/lib/spectre/analysis/cnv_metrics.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,558 copying build/lib/spectre/analysis/call_cnv_AF.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,560 copying build/lib/spectre/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,563 copying build/lib/spectre/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,564 copying build/lib/spectre/analysis/cnv_candidate.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,566 copying build/lib/spectre/analysis/coverage_stats.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,569 copying build/lib/spectre/analysis/call_cnv_coverage.py -> build/bdist.linux-armv7l/wheel/./spectre/analysis 2024-11-08T12:16:40,575 copying build/lib/spectre/spectreCNVPopulation.py -> build/bdist.linux-armv7l/wheel/./spectre 2024-11-08T12:16:40,578 creating build/bdist.linux-armv7l/wheel/spectre/data 2024-11-08T12:16:40,579 copying build/lib/spectre/data/hg38_blacklist_v1.0.bed -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,584 copying build/lib/spectre/data/hg19_blacklist_v1.0.bed -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,589 copying build/lib/spectre/data/chm13v2_blacklist_v1.0.bed -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,593 copying build/lib/spectre/data/hg19_metadata.mdr -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,596 copying build/lib/spectre/data/hg38_metadata.mdr -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,599 copying build/lib/spectre/data/chm13v2_metadata.mdr -> build/bdist.linux-armv7l/wheel/./spectre/data 2024-11-08T12:16:40,601 copying build/lib/spectre/main.py -> build/bdist.linux-armv7l/wheel/./spectre 2024-11-08T12:16:40,604 copying build/lib/spectre/__init__.py -> build/bdist.linux-armv7l/wheel/./spectre 2024-11-08T12:16:40,606 running install_egg_info 2024-11-08T12:16:40,639 running egg_info 2024-11-08T12:16:40,666 writing ont_spectre.egg-info/PKG-INFO 2024-11-08T12:16:40,671 writing dependency_links to ont_spectre.egg-info/dependency_links.txt 2024-11-08T12:16:40,675 writing entry points to ont_spectre.egg-info/entry_points.txt 2024-11-08T12:16:40,676 writing requirements to ont_spectre.egg-info/requires.txt 2024-11-08T12:16:40,678 writing top-level names to ont_spectre.egg-info/top_level.txt 2024-11-08T12:16:40,713 reading manifest file 'ont_spectre.egg-info/SOURCES.txt' 2024-11-08T12:16:40,717 reading manifest template 'MANIFEST.in' 2024-11-08T12:16:40,718 adding license file 'LICENSE.md' 2024-11-08T12:16:40,722 writing manifest file 'ont_spectre.egg-info/SOURCES.txt' 2024-11-08T12:16:40,724 Copying ont_spectre.egg-info to build/bdist.linux-armv7l/wheel/./ont_spectre-0.3.2-py3.11.egg-info 2024-11-08T12:16:40,737 running install_scripts 2024-11-08T12:16:40,754 creating build/bdist.linux-armv7l/wheel/ont_spectre-0.3.2.dist-info/WHEEL 2024-11-08T12:16:40,757 creating '/tmp/pip-wheel-m9fvd69n/ont_spectre-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-08T12:16:40,760 adding 'spectre/__init__.py' 2024-11-08T12:16:40,764 adding 'spectre/main.py' 2024-11-08T12:16:40,766 adding 'spectre/spectreCNV.py' 2024-11-08T12:16:40,768 adding 'spectre/spectreCNVPopulation.py' 2024-11-08T12:16:40,770 adding 'spectre/analysis/__init__.py' 2024-11-08T12:16:40,774 adding 'spectre/analysis/analysis.py' 2024-11-08T12:16:40,776 adding 'spectre/analysis/call_cnv_AF.py' 2024-11-08T12:16:40,778 adding 'spectre/analysis/call_cnv_coverage.py' 2024-11-08T12:16:40,779 adding 'spectre/analysis/cnv_candidate.py' 2024-11-08T12:16:40,782 adding 'spectre/analysis/cnv_metrics.py' 2024-11-08T12:16:40,783 adding 'spectre/analysis/coverage_stats.py' 2024-11-08T12:16:40,794 adding 'spectre/data/chm13v2_blacklist_v1.0.bed' 2024-11-08T12:16:40,796 adding 'spectre/data/chm13v2_metadata.mdr' 2024-11-08T12:16:40,822 adding 'spectre/data/hg19_blacklist_v1.0.bed' 2024-11-08T12:16:40,826 adding 'spectre/data/hg19_metadata.mdr' 2024-11-08T12:16:40,859 adding 'spectre/data/hg38_blacklist_v1.0.bed' 2024-11-08T12:16:40,865 adding 'spectre/data/hg38_metadata.mdr' 2024-11-08T12:16:40,867 adding 'spectre/plots/__init__.py' 2024-11-08T12:16:40,869 adding 'spectre/plots/plot.py' 2024-11-08T12:16:40,871 adding 'spectre/util/OSUtil.py' 2024-11-08T12:16:40,872 adding 'spectre/util/__init__.py' 2024-11-08T12:16:40,873 adding 'spectre/util/cnv_id.py' 2024-11-08T12:16:40,875 adding 'spectre/util/dataAnalyzer.py' 2024-11-08T12:16:40,876 adding 'spectre/util/mosdepthReader.py' 2024-11-08T12:16:40,878 adding 'spectre/util/outputWriter.py' 2024-11-08T12:16:40,880 adding 'spectre/util/vcf_parser.py' 2024-11-08T12:16:40,881 adding 'spectre/util/metadata/__init__.py' 2024-11-08T12:16:40,883 adding 'spectre/util/metadata/metadataCollector.py' 2024-11-08T12:16:40,886 adding 'ont_spectre-0.3.2.dist-info/LICENSE.md' 2024-11-08T12:16:40,887 adding 'ont_spectre-0.3.2.dist-info/METADATA' 2024-11-08T12:16:40,888 adding 'ont_spectre-0.3.2.dist-info/WHEEL' 2024-11-08T12:16:40,889 adding 'ont_spectre-0.3.2.dist-info/entry_points.txt' 2024-11-08T12:16:40,890 adding 'ont_spectre-0.3.2.dist-info/top_level.txt' 2024-11-08T12:16:40,891 adding 'ont_spectre-0.3.2.dist-info/RECORD' 2024-11-08T12:16:40,895 removing build/bdist.linux-armv7l/wheel 2024-11-08T12:16:41,014 Building wheel for ont-spectre (setup.py): finished with status 'done' 2024-11-08T12:16:41,018 Created wheel for ont-spectre: filename=ont_spectre-0.3.2-py3-none-any.whl size=169444 sha256=658ba21e5c37c8a65dd2585a486ebae272fa8dde1882a31d8d9ce587e35612c2 2024-11-08T12:16:41,020 Stored in directory: /tmp/pip-ephem-wheel-cache-89eq923g/wheels/f0/29/3e/cdbff9eacbf32b7cbd2be8a2dc42fba82888f7cf19fd01ace9 2024-11-08T12:16:41,031 Successfully built ont-spectre 2024-11-08T12:16:41,040 Removed build tracker: '/tmp/pip-build-tracker-43xphsdt'