2024-11-11T19:26:41,077 Created temporary directory: /tmp/pip-build-tracker-r5iom9ea
2024-11-11T19:26:41,078 Initialized build tracking at /tmp/pip-build-tracker-r5iom9ea
2024-11-11T19:26:41,079 Created build tracker: /tmp/pip-build-tracker-r5iom9ea
2024-11-11T19:26:41,079 Entered build tracker: /tmp/pip-build-tracker-r5iom9ea
2024-11-11T19:26:41,080 Created temporary directory: /tmp/pip-wheel-1rg5yell
2024-11-11T19:26:41,084 Created temporary directory: /tmp/pip-ephem-wheel-cache-lvttnffj
2024-11-11T19:26:41,129 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-11T19:26:41,132 2 location(s) to search for versions of meeko:
2024-11-11T19:26:41,132 * https://pypi.org/simple/meeko/
2024-11-11T19:26:41,132 * https://www.piwheels.org/simple/meeko/
2024-11-11T19:26:41,133 Fetching project page and analyzing links: https://pypi.org/simple/meeko/
2024-11-11T19:26:41,133 Getting page https://pypi.org/simple/meeko/
2024-11-11T19:26:41,135 Found index url https://pypi.org/simple/
2024-11-11T19:26:41,359 Fetched page https://pypi.org/simple/meeko/ as application/vnd.pypi.simple.v1+json
2024-11-11T19:26:41,365   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/38/c7/946dda1732a3aeca878b9cf1aa1a965066488479d67e4fc137d2379a79b6/meeko-0.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,366   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/61/30/79ecf599df2c81ead389544f3291774adddccb3ac4548eae61a7b8a62bc3/meeko-0.1.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,366   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/89/84/827a0ea853ba0970f0287eb09ba7d07186590a510d10a8b63a2d884ac447/meeko-0.1.dev3-py2.py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,367   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/ec/d2/c1eaf8b818377fbe788daf86dc8994fcc4ae2d4b6fa00c2a5c81d8aa2ca6/meeko-0.1.dev3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,368   Found link https://files.pythonhosted.org/packages/ec/d2/c1eaf8b818377fbe788daf86dc8994fcc4ae2d4b6fa00c2a5c81d8aa2ca6/meeko-0.1.dev3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.1.dev3
2024-11-11T19:26:41,368   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/f1/b6/fe6205ca310917d121b6f96259c845d94ef627d7473fc2bd119235b5b8d3/meeko-0.2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,369   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,370   Found link https://files.pythonhosted.org/packages/23/24/36f5b53aa74cd50f5e6cea8d5d5f3b99b6f3ea1e2a059d13f5f8d51a0624/meeko-0.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.2
2024-11-11T19:26:41,370   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/15/e4/e0195c8d07d6c9226c9940ecb9164e6120e9502f64bee2a6303fb0a75ca1/meeko-0.3.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,371   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/1b/e5/ff954b3fbef337ac7cd0d29ebab8864385aad66fe528aae73d05604dddfd/meeko-0.3.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,372   Found link https://files.pythonhosted.org/packages/1b/e5/ff954b3fbef337ac7cd0d29ebab8864385aad66fe528aae73d05604dddfd/meeko-0.3.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.0
2024-11-11T19:26:41,372   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/7a/ff/6e57ed90d6384e76ea2acb31a929f8f036468e07c80319764805398db9d8/meeko-0.3.1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,373   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/33/b4/3a1d12da1c3bc0c7381c51aec8e51206f2b28b8c394b23cc4b373593c478/meeko-0.3.1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,374   Found link https://files.pythonhosted.org/packages/33/b4/3a1d12da1c3bc0c7381c51aec8e51206f2b28b8c394b23cc4b373593c478/meeko-0.3.1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.1
2024-11-11T19:26:41,374   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/1a/9d/28755e7eb7679082f4e00ef3e9ad3365e9f90c0d341e95289306a7d10831/meeko-0.3.2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,375   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/04/fd/03d4d7fb97c6ce5789eea55cc8a5a27b3c9ba2e9e8944c46855d0356786d/meeko-0.3.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,375   Found link https://files.pythonhosted.org/packages/04/fd/03d4d7fb97c6ce5789eea55cc8a5a27b3c9ba2e9e8944c46855d0356786d/meeko-0.3.2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.2
2024-11-11T19:26:41,376   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/53/ae/fb019569a4c5d74bcd83434261e41b322aacfae687f38b1c8596c24be8b2/meeko-0.3.3-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,377   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/97/42/a9846a4bd8c90d8cf64857e183f3dc55f0553bad814a25ad9e454d51092b/meeko-0.3.3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,377   Found link https://files.pythonhosted.org/packages/97/42/a9846a4bd8c90d8cf64857e183f3dc55f0553bad814a25ad9e454d51092b/meeko-0.3.3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.3.3
2024-11-11T19:26:41,378   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/a1/38/e64382d54a507d7cd9b25472e91476d105e312ae8e3f88feacbd3ed6c4ca/meeko-0.4.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,378   Ignoring invalid Requires-Python ('>=3.5.*') for link: https://files.pythonhosted.org/packages/df/e8/5599f1f3b4d82a6fd509e9ba1494866c9be26cb9cba57cffe433fb6573e1/meeko-0.4.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,379   Found link https://files.pythonhosted.org/packages/df/e8/5599f1f3b4d82a6fd509e9ba1494866c9be26cb9cba57cffe433fb6573e1/meeko-0.4.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5.*), version: 0.4.0
2024-11-11T19:26:41,380   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0f/97/aaae239d66f408f0d58c949bf4bc7c62add39fbf9ff22733fb087937ca82/meeko-0.5.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,381   Found link https://files.pythonhosted.org/packages/78/17/8947c029c13d2f55f3a4833e17722dd275f94b10a7c32914374981eb8c8e/meeko-0.5.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.5.0
2024-11-11T19:26:41,381   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/e6/68/0fb8cfde91aac2fdb8377048043c70f1d7630bcdeb08398b0308c612ee53/meeko-0.5.1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.5)
2024-11-11T19:26:41,382   Found link https://files.pythonhosted.org/packages/0f/cb/e51f5d788b046de6ddec15df59b455aef7c13914c5d2d5e519275ccf18a3/meeko-0.5.1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.5), version: 0.5.1
2024-11-11T19:26:41,383   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0f/93/453299cc4dca86c36c7eb9c35374078bfe1aa64a062d55d850286e73b083/meeko-0.6.0a0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,384   Found link https://files.pythonhosted.org/packages/17/d1/0906b1cb62d6d1bad1b7f1ab8d24d13fc7b8df66759ef4d0ce4fa4378de6/meeko-0.6.0a0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a0
2024-11-11T19:26:41,385   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/0a/9f/774439a1db856b584ee216bea0e5319027518e7495bed613a65dbb960793/meeko-0.6.0a1-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,386   Found link https://files.pythonhosted.org/packages/6e/0f/c39e837be0f4664bf9e3d9d139cbf5e1d2d836e671ca7769522eb5326a25/meeko-0.6.0a1.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a1
2024-11-11T19:26:41,386   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/3b/68/0733d4e5205baefc5484705710a8754117a50ca8acb4e1059b2908c38d4a/meeko-0.6.0a2-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,387   Found link https://files.pythonhosted.org/packages/53/af/920d5c0225b08924a0c97746264ef33c4ba5d9622548e7b76e0a273e4999/meeko-0.6.0a2.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a2
2024-11-11T19:26:41,387   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/62/c9/674cb7336acafc89f9fbb77fd80311d57743d96cda81fdd62f6f99e35c31/meeko-0.6.0a3-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,388   Found link https://files.pythonhosted.org/packages/a5/08/8abf3a5732e1c263114060366de04a76fde2c3ca6374e2fea80369e88194/meeko-0.6.0a3.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:>=3.5), version: 0.6.0a3
2024-11-11T19:26:41,389   Skipping link: No binaries permitted for meeko: https://files.pythonhosted.org/packages/6a/ca/c2fba2e1611f8be92c93e4222c0084020a72b71a509ab009bda15e30971f/meeko-0.6.0-py3-none-any.whl (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.9)
2024-11-11T19:26:41,390   Found link https://files.pythonhosted.org/packages/52/ef/f353fd719e5b0e54feec2339174140cc453af5ec5694016b834dba3ae938/meeko-0.6.0.tar.gz (from https://pypi.org/simple/meeko/) (requires-python:<3.12,>=3.9), version: 0.6.0
2024-11-11T19:26:41,391 Fetching project page and analyzing links: https://www.piwheels.org/simple/meeko/
2024-11-11T19:26:41,391 Getting page https://www.piwheels.org/simple/meeko/
2024-11-11T19:26:41,393 Found index url https://www.piwheels.org/simple/
2024-11-11T19:26:41,564 Fetched page https://www.piwheels.org/simple/meeko/ as text/html
2024-11-11T19:26:41,569   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a3-py3-none-any.whl#sha256=0a658b5458906667839e515e452caf347ab0cbc571061c216dabe7b4e54c6b3d (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,569   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a2-py3-none-any.whl#sha256=20994b5df8114eec204a0608030a8291e15c7a9214fdb1728b27489c3920027b (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,570   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a1-py3-none-any.whl#sha256=0ed52cfec48b37b3da175a1426f743aa6095efa144df31884f9cb86fb9fe40ad (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,570   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.6.0a0-py3-none-any.whl#sha256=b06250c9721d6cd2d9c001803a610364ce95f5084fded20180d0c25b77ef6b50 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,571   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.5.1-py3-none-any.whl#sha256=e307d2724fcb8af5b3fa3876d01c4499449da199af949157757b1f1a22d34b06 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5, <3.12)
2024-11-11T19:26:41,572   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.5.0-py3-none-any.whl#sha256=716f47c9471895bb7314e06164f1748d2cb8f53987d8da9d52ec129b2c91cfc3 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5)
2024-11-11T19:26:41,573   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.4.0-py3-none-any.whl#sha256=ab401b9be3dd1941184d0ad836b51fc577db7d02d277f08ffc26285d54a6ee5e (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,573   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.3-py3-none-any.whl#sha256=f226db6d061657ac79463f4cc9b02ac1639cff39efeee9d289820c1fc6895382 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,573   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.2-py3-none-any.whl#sha256=c36d011eb03705ad1d8fd598ce5e441b9c55c76b1c37011d95563b4fe5449494 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,574   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.1-py3-none-any.whl#sha256=628a26bdbddab96cde118d3180a404144108c33edcbbefe3ade9e84f286cece0 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,574   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.3.0-py3-none-any.whl#sha256=508ada8f77e474225a99c3905e6eb53c7db2a45a02c84a774d9f78a889a8da1d (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,575   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.2-py3-none-any.whl#sha256=88c75d8ed22efc73b451ac641472aa931ccbf3ef36f2f236c14a2d45d58541b2 (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,575   Skipping link: No binaries permitted for meeko: https://www.piwheels.org/simple/meeko/meeko-0.1.dev3-py2.py3-none-any.whl#sha256=feb4d48b05302efc1168ac2365ebfa920dd98fe24fca3f5cafe60376ed796caa (from https://www.piwheels.org/simple/meeko/) (requires-python:>=3.5.*)
2024-11-11T19:26:41,576 Skipping link: not a file: https://www.piwheels.org/simple/meeko/
2024-11-11T19:26:41,577 Skipping link: not a file: https://pypi.org/simple/meeko/
2024-11-11T19:26:41,597 Given no hashes to check 1 links for project 'meeko': discarding no candidates
2024-11-11T19:26:41,599 Collecting meeko==0.6.0
2024-11-11T19:26:41,601   Created temporary directory: /tmp/pip-unpack-isv2jobp
2024-11-11T19:26:41,828   Downloading meeko-0.6.0.tar.gz (273 kB)
2024-11-11T19:26:42,096   Added meeko==0.6.0 from https://files.pythonhosted.org/packages/52/ef/f353fd719e5b0e54feec2339174140cc453af5ec5694016b834dba3ae938/meeko-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-r5iom9ea'
2024-11-11T19:26:42,099   Running setup.py (path:/tmp/pip-wheel-1rg5yell/meeko_c14c39ce2f34464dbdccff4145b9589d/setup.py) egg_info for package meeko
2024-11-11T19:26:42,100   Created temporary directory: /tmp/pip-pip-egg-info-7zfcjex2
2024-11-11T19:26:42,101   Preparing metadata (setup.py): started
2024-11-11T19:26:42,102   Running command python setup.py egg_info
2024-11-11T19:26:43,180   running egg_info
2024-11-11T19:26:43,209   creating /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info
2024-11-11T19:26:43,210   writing /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/PKG-INFO
2024-11-11T19:26:43,213   writing dependency_links to /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/dependency_links.txt
2024-11-11T19:26:43,215   writing entry points to /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/entry_points.txt
2024-11-11T19:26:43,217   writing requirements to /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/requires.txt
2024-11-11T19:26:43,218   writing top-level names to /tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/top_level.txt
2024-11-11T19:26:43,219   writing manifest file '/tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/SOURCES.txt'
2024-11-11T19:26:43,312   reading manifest file '/tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/SOURCES.txt'
2024-11-11T19:26:43,313   reading manifest template 'MANIFEST.in'
2024-11-11T19:26:43,316   warning: no files found matching 'example/*'
2024-11-11T19:26:43,318   adding license file 'LICENSE'
2024-11-11T19:26:43,322   writing manifest file '/tmp/pip-pip-egg-info-7zfcjex2/meeko.egg-info/SOURCES.txt'
2024-11-11T19:26:43,430   Preparing metadata (setup.py): finished with status 'done'
2024-11-11T19:26:43,434   Source in /tmp/pip-wheel-1rg5yell/meeko_c14c39ce2f34464dbdccff4145b9589d has version 0.6.0, which satisfies requirement meeko==0.6.0 from https://files.pythonhosted.org/packages/52/ef/f353fd719e5b0e54feec2339174140cc453af5ec5694016b834dba3ae938/meeko-0.6.0.tar.gz
2024-11-11T19:26:43,435   Removed meeko==0.6.0 from https://files.pythonhosted.org/packages/52/ef/f353fd719e5b0e54feec2339174140cc453af5ec5694016b834dba3ae938/meeko-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-r5iom9ea'
2024-11-11T19:26:43,441 Created temporary directory: /tmp/pip-unpack-4v81kvkl
2024-11-11T19:26:43,442 Created temporary directory: /tmp/pip-unpack-iob3_hfv
2024-11-11T19:26:43,443 Building wheels for collected packages: meeko
2024-11-11T19:26:43,446   Created temporary directory: /tmp/pip-wheel-5xxxsk_r
2024-11-11T19:26:43,447   Building wheel for meeko (setup.py): started
2024-11-11T19:26:43,448   Destination directory: /tmp/pip-wheel-5xxxsk_r
2024-11-11T19:26:43,449   Running command python setup.py bdist_wheel
2024-11-11T19:26:44,876   running bdist_wheel
2024-11-11T19:26:45,007   running build
2024-11-11T19:26:45,008   running build_py
2024-11-11T19:26:45,039   creating build/lib/meeko
2024-11-11T19:26:45,042   copying meeko/covalentbuilder.py -> build/lib/meeko
2024-11-11T19:26:45,045   copying meeko/hydrate.py -> build/lib/meeko
2024-11-11T19:26:45,048   copying meeko/bondtyper.py -> build/lib/meeko
2024-11-11T19:26:45,050   copying meeko/molsetup.py -> build/lib/meeko
2024-11-11T19:26:45,054   copying meeko/openff_xml_parser.py -> build/lib/meeko
2024-11-11T19:26:45,056   copying meeko/molecule_pdbqt.py -> build/lib/meeko
2024-11-11T19:26:45,059   copying meeko/macrocycle.py -> build/lib/meeko
2024-11-11T19:26:45,061   copying meeko/preparation.py -> build/lib/meeko
2024-11-11T19:26:45,064   copying meeko/receptor_pdbqt.py -> build/lib/meeko
2024-11-11T19:26:45,066   copying meeko/__init__.py -> build/lib/meeko
2024-11-11T19:26:45,068   copying meeko/polymer.py -> build/lib/meeko
2024-11-11T19:26:45,073   copying meeko/gridbox.py -> build/lib/meeko
2024-11-11T19:26:45,076   copying meeko/writer.py -> build/lib/meeko
2024-11-11T19:26:45,080   copying meeko/rdkit_mol_create.py -> build/lib/meeko
2024-11-11T19:26:45,083   copying meeko/flexibility.py -> build/lib/meeko
2024-11-11T19:26:45,085   copying meeko/export_flexres.py -> build/lib/meeko
2024-11-11T19:26:45,087   copying meeko/chemtempgen.py -> build/lib/meeko
2024-11-11T19:26:45,091   copying meeko/reactive.py -> build/lib/meeko
2024-11-11T19:26:45,093   copying meeko/espalomatyper.py -> build/lib/meeko
2024-11-11T19:26:45,095   copying meeko/atomtyper.py -> build/lib/meeko
2024-11-11T19:26:45,098   creating build/lib/meeko/utils
2024-11-11T19:26:45,099   copying meeko/utils/rdkitutils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,102   copying meeko/utils/geomutils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,104   copying meeko/utils/pdbutils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,106   copying meeko/utils/utils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,108   copying meeko/utils/jsonutils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,110   copying meeko/utils/__init__.py -> build/lib/meeko/utils
2024-11-11T19:26:45,112   copying meeko/utils/covalent_radius_table.py -> build/lib/meeko/utils
2024-11-11T19:26:45,114   copying meeko/utils/autodock4_atom_types_elements.py -> build/lib/meeko/utils
2024-11-11T19:26:45,115   copying meeko/utils/van_der_waals_radius_table.py -> build/lib/meeko/utils
2024-11-11T19:26:45,117   copying meeko/utils/prodyutils.py -> build/lib/meeko/utils
2024-11-11T19:26:45,120   creating build/lib/meeko/cli
2024-11-11T19:26:45,121   copying meeko/cli/__init__.py -> build/lib/meeko/cli
2024-11-11T19:26:45,122   copying meeko/cli/mk_export.py -> build/lib/meeko/cli
2024-11-11T19:26:45,125   copying meeko/cli/mk_prepare_ligand.py -> build/lib/meeko/cli
2024-11-11T19:26:45,127   copying meeko/cli/mk_prepare_receptor.py -> build/lib/meeko/cli
2024-11-11T19:26:45,130   creating build/lib/meeko/analysis
2024-11-11T19:26:45,131   copying meeko/analysis/__init__.py -> build/lib/meeko/analysis
2024-11-11T19:26:45,134   copying meeko/analysis/interactions.py -> build/lib/meeko/analysis
2024-11-11T19:26:45,137   copying meeko/analysis/fingerprint_interactions.py -> build/lib/meeko/analysis
2024-11-11T19:26:45,139   running egg_info
2024-11-11T19:26:45,168   writing meeko.egg-info/PKG-INFO
2024-11-11T19:26:45,171   writing dependency_links to meeko.egg-info/dependency_links.txt
2024-11-11T19:26:45,172   writing entry points to meeko.egg-info/entry_points.txt
2024-11-11T19:26:45,173   writing requirements to meeko.egg-info/requires.txt
2024-11-11T19:26:45,175   writing top-level names to meeko.egg-info/top_level.txt
2024-11-11T19:26:45,209   reading manifest file 'meeko.egg-info/SOURCES.txt'
2024-11-11T19:26:45,214   reading manifest template 'MANIFEST.in'
2024-11-11T19:26:45,216   warning: no files found matching 'example/*'
2024-11-11T19:26:45,218   adding license file 'LICENSE'
2024-11-11T19:26:45,222   writing manifest file 'meeko.egg-info/SOURCES.txt'
2024-11-11T19:26:45,225   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'meeko.data' is absent from the `packages` configuration.
2024-11-11T19:26:45,226   !!

2024-11-11T19:26:45,227           ********************************************************************************
2024-11-11T19:26:45,227           ############################
2024-11-11T19:26:45,228           # Package would be ignored #
2024-11-11T19:26:45,228           ############################
2024-11-11T19:26:45,229           Python recognizes 'meeko.data' as an importable package[^1],
2024-11-11T19:26:45,229           but it is absent from setuptools' `packages` configuration.

2024-11-11T19:26:45,230           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-11T19:26:45,231           package, please make sure that 'meeko.data' is explicitly added
2024-11-11T19:26:45,231           to the `packages` configuration field.

2024-11-11T19:26:45,232           Alternatively, you can also rely on setuptools' discovery methods
2024-11-11T19:26:45,233           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-11T19:26:45,233           instead of `find_packages(...)`/`find:`).

2024-11-11T19:26:45,234           You can read more about "package discovery" on setuptools documentation page:

2024-11-11T19:26:45,235           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-11T19:26:45,237           If you don't want 'meeko.data' to be distributed and are
2024-11-11T19:26:45,237           already explicitly excluding 'meeko.data' via
2024-11-11T19:26:45,238           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-11T19:26:45,239           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-11T19:26:45,239           combination with a more fine grained `package-data` configuration.

2024-11-11T19:26:45,241           You can read more about "package data files" on setuptools documentation page:

2024-11-11T19:26:45,242           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-11T19:26:45,245           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-11T19:26:45,245                 even if it does not contain any `.py` files.
2024-11-11T19:26:45,246                 On the other hand, currently there is no concept of package data
2024-11-11T19:26:45,246                 directory, all directories are treated like packages.
2024-11-11T19:26:45,247           ********************************************************************************

2024-11-11T19:26:45,248   !!
2024-11-11T19:26:45,249     check.warn(importable)
2024-11-11T19:26:45,249   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'meeko.tmp' is absent from the `packages` configuration.
2024-11-11T19:26:45,250   !!

2024-11-11T19:26:45,251           ********************************************************************************
2024-11-11T19:26:45,251           ############################
2024-11-11T19:26:45,252           # Package would be ignored #
2024-11-11T19:26:45,252           ############################
2024-11-11T19:26:45,253           Python recognizes 'meeko.tmp' as an importable package[^1],
2024-11-11T19:26:45,254           but it is absent from setuptools' `packages` configuration.

2024-11-11T19:26:45,257           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-11T19:26:45,257           package, please make sure that 'meeko.tmp' is explicitly added
2024-11-11T19:26:45,258           to the `packages` configuration field.

2024-11-11T19:26:45,259           Alternatively, you can also rely on setuptools' discovery methods
2024-11-11T19:26:45,260           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-11T19:26:45,260           instead of `find_packages(...)`/`find:`).

2024-11-11T19:26:45,263           You can read more about "package discovery" on setuptools documentation page:

2024-11-11T19:26:45,265           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-11T19:26:45,266           If you don't want 'meeko.tmp' to be distributed and are
2024-11-11T19:26:45,266           already explicitly excluding 'meeko.tmp' via
2024-11-11T19:26:45,267           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-11T19:26:45,268           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-11T19:26:45,268           combination with a more fine grained `package-data` configuration.

2024-11-11T19:26:45,269           You can read more about "package data files" on setuptools documentation page:

2024-11-11T19:26:45,270           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-11T19:26:45,272           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-11T19:26:45,273                 even if it does not contain any `.py` files.
2024-11-11T19:26:45,273                 On the other hand, currently there is no concept of package data
2024-11-11T19:26:45,274                 directory, all directories are treated like packages.
2024-11-11T19:26:45,275           ********************************************************************************

2024-11-11T19:26:45,276   !!
2024-11-11T19:26:45,276     check.warn(importable)
2024-11-11T19:26:45,277   creating build/lib/meeko/data
2024-11-11T19:26:45,278   copying meeko/data/NAKB_templates.json -> build/lib/meeko/data
2024-11-11T19:26:45,278   copying meeko/data/residue_chem_templates.json -> build/lib/meeko/data
2024-11-11T19:26:45,279   creating build/lib/meeko/tmp
2024-11-11T19:26:45,279   copying meeko/tmp/compute_water_map.py -> build/lib/meeko/tmp
2024-11-11T19:26:45,280   copying meeko/tmp/water_builder.py -> build/lib/meeko/tmp
2024-11-11T19:26:45,280   copying meeko/tmp/water_map_builder.py -> build/lib/meeko/tmp
2024-11-11T19:26:45,306   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-11T19:26:45,307   !!

2024-11-11T19:26:45,309           ********************************************************************************
2024-11-11T19:26:45,309           Please avoid running ``setup.py`` directly.
2024-11-11T19:26:45,310           Instead, use pypa/build, pypa/installer or other
2024-11-11T19:26:45,310           standards-based tools.

2024-11-11T19:26:45,311           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-11T19:26:45,312           ********************************************************************************

2024-11-11T19:26:45,313   !!
2024-11-11T19:26:45,313     self.initialize_options()
2024-11-11T19:26:45,337   installing to build/bdist.linux-armv7l/wheel
2024-11-11T19:26:45,338   running install
2024-11-11T19:26:45,362   running install_lib
2024-11-11T19:26:45,390   creating build/bdist.linux-armv7l/wheel
2024-11-11T19:26:45,392   creating build/bdist.linux-armv7l/wheel/meeko
2024-11-11T19:26:45,394   creating build/bdist.linux-armv7l/wheel/meeko/tmp
2024-11-11T19:26:45,395   copying build/lib/meeko/tmp/water_builder.py -> build/bdist.linux-armv7l/wheel/./meeko/tmp
2024-11-11T19:26:45,398   copying build/lib/meeko/tmp/compute_water_map.py -> build/bdist.linux-armv7l/wheel/./meeko/tmp
2024-11-11T19:26:45,401   copying build/lib/meeko/tmp/water_map_builder.py -> build/bdist.linux-armv7l/wheel/./meeko/tmp
2024-11-11T19:26:45,403   copying build/lib/meeko/covalentbuilder.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,406   creating build/bdist.linux-armv7l/wheel/meeko/utils
2024-11-11T19:26:45,407   copying build/lib/meeko/utils/rdkitutils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,409   copying build/lib/meeko/utils/geomutils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,412   copying build/lib/meeko/utils/pdbutils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,413   copying build/lib/meeko/utils/utils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,416   copying build/lib/meeko/utils/jsonutils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,418   copying build/lib/meeko/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,420   copying build/lib/meeko/utils/covalent_radius_table.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,422   copying build/lib/meeko/utils/autodock4_atom_types_elements.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,424   copying build/lib/meeko/utils/van_der_waals_radius_table.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,426   copying build/lib/meeko/utils/prodyutils.py -> build/bdist.linux-armv7l/wheel/./meeko/utils
2024-11-11T19:26:45,428   copying build/lib/meeko/hydrate.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,431   copying build/lib/meeko/bondtyper.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,433   copying build/lib/meeko/molsetup.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,438   copying build/lib/meeko/openff_xml_parser.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,441   copying build/lib/meeko/molecule_pdbqt.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,445   copying build/lib/meeko/macrocycle.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,447   copying build/lib/meeko/preparation.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,450   copying build/lib/meeko/receptor_pdbqt.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,453   copying build/lib/meeko/__init__.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,454   copying build/lib/meeko/polymer.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,458   copying build/lib/meeko/gridbox.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,461   copying build/lib/meeko/writer.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,464   copying build/lib/meeko/rdkit_mol_create.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,467   creating build/bdist.linux-armv7l/wheel/meeko/cli
2024-11-11T19:26:45,468   copying build/lib/meeko/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./meeko/cli
2024-11-11T19:26:45,470   copying build/lib/meeko/cli/mk_export.py -> build/bdist.linux-armv7l/wheel/./meeko/cli
2024-11-11T19:26:45,472   copying build/lib/meeko/cli/mk_prepare_ligand.py -> build/bdist.linux-armv7l/wheel/./meeko/cli
2024-11-11T19:26:45,474   copying build/lib/meeko/cli/mk_prepare_receptor.py -> build/bdist.linux-armv7l/wheel/./meeko/cli
2024-11-11T19:26:45,477   copying build/lib/meeko/flexibility.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,480   copying build/lib/meeko/export_flexres.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,482   copying build/lib/meeko/chemtempgen.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,485   copying build/lib/meeko/reactive.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,488   creating build/bdist.linux-armv7l/wheel/meeko/analysis
2024-11-11T19:26:45,489   copying build/lib/meeko/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./meeko/analysis
2024-11-11T19:26:45,491   copying build/lib/meeko/analysis/interactions.py -> build/bdist.linux-armv7l/wheel/./meeko/analysis
2024-11-11T19:26:45,493   copying build/lib/meeko/analysis/fingerprint_interactions.py -> build/bdist.linux-armv7l/wheel/./meeko/analysis
2024-11-11T19:26:45,496   copying build/lib/meeko/espalomatyper.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,498   copying build/lib/meeko/atomtyper.py -> build/bdist.linux-armv7l/wheel/./meeko
2024-11-11T19:26:45,501   creating build/bdist.linux-armv7l/wheel/meeko/data
2024-11-11T19:26:45,502   copying build/lib/meeko/data/residue_chem_templates.json -> build/bdist.linux-armv7l/wheel/./meeko/data
2024-11-11T19:26:45,510   copying build/lib/meeko/data/NAKB_templates.json -> build/bdist.linux-armv7l/wheel/./meeko/data
2024-11-11T19:26:45,525   running install_egg_info
2024-11-11T19:26:45,560   Copying meeko.egg-info to build/bdist.linux-armv7l/wheel/./meeko-0.6.0-py3.11.egg-info
2024-11-11T19:26:45,574   running install_scripts
2024-11-11T19:26:45,592   creating build/bdist.linux-armv7l/wheel/meeko-0.6.0.dist-info/WHEEL
2024-11-11T19:26:45,595   creating '/tmp/pip-wheel-5xxxsk_r/meeko-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-11T19:26:45,597   adding 'meeko/__init__.py'
2024-11-11T19:26:45,600   adding 'meeko/atomtyper.py'
2024-11-11T19:26:45,601   adding 'meeko/bondtyper.py'
2024-11-11T19:26:45,606   adding 'meeko/chemtempgen.py'
2024-11-11T19:26:45,608   adding 'meeko/covalentbuilder.py'
2024-11-11T19:26:45,610   adding 'meeko/espalomatyper.py'
2024-11-11T19:26:45,612   adding 'meeko/export_flexres.py'
2024-11-11T19:26:45,614   adding 'meeko/flexibility.py'
2024-11-11T19:26:45,616   adding 'meeko/gridbox.py'
2024-11-11T19:26:45,619   adding 'meeko/hydrate.py'
2024-11-11T19:26:45,621   adding 'meeko/macrocycle.py'
2024-11-11T19:26:45,625   adding 'meeko/molecule_pdbqt.py'
2024-11-11T19:26:45,635   adding 'meeko/molsetup.py'
2024-11-11T19:26:45,637   adding 'meeko/openff_xml_parser.py'
2024-11-11T19:26:45,650   adding 'meeko/polymer.py'
2024-11-11T19:26:45,653   adding 'meeko/preparation.py'
2024-11-11T19:26:45,656   adding 'meeko/rdkit_mol_create.py'
2024-11-11T19:26:45,658   adding 'meeko/reactive.py'
2024-11-11T19:26:45,660   adding 'meeko/receptor_pdbqt.py'
2024-11-11T19:26:45,663   adding 'meeko/writer.py'
2024-11-11T19:26:45,665   adding 'meeko/analysis/__init__.py'
2024-11-11T19:26:45,666   adding 'meeko/analysis/fingerprint_interactions.py'
2024-11-11T19:26:45,668   adding 'meeko/analysis/interactions.py'
2024-11-11T19:26:45,670   adding 'meeko/cli/__init__.py'
2024-11-11T19:26:45,671   adding 'meeko/cli/mk_export.py'
2024-11-11T19:26:45,674   adding 'meeko/cli/mk_prepare_ligand.py'
2024-11-11T19:26:45,679   adding 'meeko/cli/mk_prepare_receptor.py'
2024-11-11T19:26:45,738   adding 'meeko/data/NAKB_templates.json'
2024-11-11T19:26:45,765   adding 'meeko/data/residue_chem_templates.json'
2024-11-11T19:26:45,769   adding 'meeko/tmp/compute_water_map.py'
2024-11-11T19:26:45,773   adding 'meeko/tmp/water_builder.py'
2024-11-11T19:26:45,774   adding 'meeko/tmp/water_map_builder.py'
2024-11-11T19:26:45,776   adding 'meeko/utils/__init__.py'
2024-11-11T19:26:45,777   adding 'meeko/utils/autodock4_atom_types_elements.py'
2024-11-11T19:26:45,778   adding 'meeko/utils/covalent_radius_table.py'
2024-11-11T19:26:45,781   adding 'meeko/utils/geomutils.py'
2024-11-11T19:26:45,782   adding 'meeko/utils/jsonutils.py'
2024-11-11T19:26:45,783   adding 'meeko/utils/pdbutils.py'
2024-11-11T19:26:45,785   adding 'meeko/utils/prodyutils.py'
2024-11-11T19:26:45,787   adding 'meeko/utils/rdkitutils.py'
2024-11-11T19:26:45,789   adding 'meeko/utils/utils.py'
2024-11-11T19:26:45,791   adding 'meeko/utils/van_der_waals_radius_table.py'
2024-11-11T19:26:45,796   adding 'meeko-0.6.0.dist-info/LICENSE'
2024-11-11T19:26:45,797   adding 'meeko-0.6.0.dist-info/METADATA'
2024-11-11T19:26:45,798   adding 'meeko-0.6.0.dist-info/WHEEL'
2024-11-11T19:26:45,799   adding 'meeko-0.6.0.dist-info/entry_points.txt'
2024-11-11T19:26:45,800   adding 'meeko-0.6.0.dist-info/top_level.txt'
2024-11-11T19:26:45,801   adding 'meeko-0.6.0.dist-info/RECORD'
2024-11-11T19:26:45,806   removing build/bdist.linux-armv7l/wheel
2024-11-11T19:26:45,929   Building wheel for meeko (setup.py): finished with status 'done'
2024-11-11T19:26:45,934   Created wheel for meeko: filename=meeko-0.6.0-py3-none-any.whl size=277387 sha256=052605cf968a84a00bb70091796146715e1e5a97a3c2b5b1a54e24f8faa3742d
2024-11-11T19:26:45,935   Stored in directory: /tmp/pip-ephem-wheel-cache-lvttnffj/wheels/8a/9f/23/f508c925106f4cb5734b23b752653b5f5ef881e4674e934c59
2024-11-11T19:26:45,948 Successfully built meeko
2024-11-11T19:26:45,962 Removed build tracker: '/tmp/pip-build-tracker-r5iom9ea'