2024-11-12T10:21:57,391 Created temporary directory: /tmp/pip-build-tracker-sajjyyi7
2024-11-12T10:21:57,393 Initialized build tracking at /tmp/pip-build-tracker-sajjyyi7
2024-11-12T10:21:57,394 Created build tracker: /tmp/pip-build-tracker-sajjyyi7
2024-11-12T10:21:57,394 Entered build tracker: /tmp/pip-build-tracker-sajjyyi7
2024-11-12T10:21:57,395 Created temporary directory: /tmp/pip-wheel-_j5ydn_e
2024-11-12T10:21:57,399 Created temporary directory: /tmp/pip-ephem-wheel-cache-efqn4y9v
2024-11-12T10:21:57,443 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-12T10:21:57,445 2 location(s) to search for versions of pyloopsage:
2024-11-12T10:21:57,445 * https://pypi.org/simple/pyloopsage/
2024-11-12T10:21:57,445 * https://www.piwheels.org/simple/pyloopsage/
2024-11-12T10:21:57,446 Fetching project page and analyzing links: https://pypi.org/simple/pyloopsage/
2024-11-12T10:21:57,447 Getting page https://pypi.org/simple/pyloopsage/
2024-11-12T10:21:57,448 Found index url https://pypi.org/simple/
2024-11-12T10:21:57,668 Fetched page https://pypi.org/simple/pyloopsage/ as application/vnd.pypi.simple.v1+json
2024-11-12T10:21:57,671   Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/a2/53/c8f2f823b430a9477e549d8a7e8ab36ac976aacd58fe05f84de97db3bd8e/pyLoopSage-1.0.12-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10)
2024-11-12T10:21:57,672   Found link https://files.pythonhosted.org/packages/06/24/b7f5b33dd6254e6c36949878606f20d09ddb3c1e0291a1cb48e2d8888ea6/pyloopsage-1.0.12.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.12
2024-11-12T10:21:57,672   Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/18/43/8d63b472c98e81ae43d778d4ba563c0e0fd875dd77396857390c7cc78e00/pyLoopSage-1.0.14-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10)
2024-11-12T10:21:57,673   Found link https://files.pythonhosted.org/packages/b1/08/a7909cae609d3b17ff3ba9084b3277a9004ec6e5e59cd02f1e87c735bc49/pyloopsage-1.0.14.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.14
2024-11-12T10:21:57,674   Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/3d/9f/417d8f08f90cc93cb9b1f9aee56a42ce3d518476b0178cfc03272f1a9ba8/pyLoopSage-1.0.15-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10)
2024-11-12T10:21:57,675   Found link https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.15
2024-11-12T10:21:57,676 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyloopsage/
2024-11-12T10:21:57,677 Getting page https://www.piwheels.org/simple/pyloopsage/
2024-11-12T10:21:57,678 Found index url https://www.piwheels.org/simple/
2024-11-12T10:21:57,856 Fetched page https://www.piwheels.org/simple/pyloopsage/ as text/html
2024-11-12T10:21:57,858   Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.14-py3-none-any.whl#sha256=a549aad40a794a609d2c75529df7d7e2f0499307bd0dca0e6dfbcf75f495ea78 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10)
2024-11-12T10:21:57,859   Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.12-py3-none-any.whl#sha256=fdd655ad8f0fe2be4aac31401ecb52091c64e4de37eeedfa793b309191bba454 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10)
2024-11-12T10:21:57,859 Skipping link: not a file: https://www.piwheels.org/simple/pyloopsage/
2024-11-12T10:21:57,860 Skipping link: not a file: https://pypi.org/simple/pyloopsage/
2024-11-12T10:21:57,881 Given no hashes to check 1 links for project 'pyloopsage': discarding no candidates
2024-11-12T10:21:57,883 Collecting pyloopsage==1.0.15
2024-11-12T10:21:57,887   Created temporary directory: /tmp/pip-unpack-iew314e0
2024-11-12T10:21:58,157   Downloading pyloopsage-1.0.15.tar.gz (52 kB)
2024-11-12T10:21:58,256   Added pyloopsage==1.0.15 from https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz to build tracker '/tmp/pip-build-tracker-sajjyyi7'
2024-11-12T10:21:58,258   Running setup.py (path:/tmp/pip-wheel-_j5ydn_e/pyloopsage_8536f4b9db07464792241b1b049f7270/setup.py) egg_info for package pyloopsage
2024-11-12T10:21:58,258   Created temporary directory: /tmp/pip-pip-egg-info-stz9z78j
2024-11-12T10:21:58,259   Preparing metadata (setup.py): started
2024-11-12T10:21:58,260   Running command python setup.py egg_info
2024-11-12T10:21:59,386   running egg_info
2024-11-12T10:21:59,413   creating /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info
2024-11-12T10:21:59,415   writing /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/PKG-INFO
2024-11-12T10:21:59,419   writing dependency_links to /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/dependency_links.txt
2024-11-12T10:21:59,421   writing entry points to /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/entry_points.txt
2024-11-12T10:21:59,423   writing requirements to /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/requires.txt
2024-11-12T10:21:59,424   writing top-level names to /tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/top_level.txt
2024-11-12T10:21:59,426   writing manifest file '/tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/SOURCES.txt'
2024-11-12T10:21:59,516   reading manifest file '/tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/SOURCES.txt'
2024-11-12T10:21:59,518   adding license file 'LICENSE'
2024-11-12T10:21:59,521   writing manifest file '/tmp/pip-pip-egg-info-stz9z78j/pyLoopSage.egg-info/SOURCES.txt'
2024-11-12T10:21:59,630   Preparing metadata (setup.py): finished with status 'done'
2024-11-12T10:21:59,635   Source in /tmp/pip-wheel-_j5ydn_e/pyloopsage_8536f4b9db07464792241b1b049f7270 has version 1.0.15, which satisfies requirement pyloopsage==1.0.15 from https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz
2024-11-12T10:21:59,636   Removed pyloopsage==1.0.15 from https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz from build tracker '/tmp/pip-build-tracker-sajjyyi7'
2024-11-12T10:21:59,645 Created temporary directory: /tmp/pip-unpack-h49aehxp
2024-11-12T10:21:59,646 Created temporary directory: /tmp/pip-unpack-_q44ewod
2024-11-12T10:21:59,647 Building wheels for collected packages: pyloopsage
2024-11-12T10:21:59,651   Created temporary directory: /tmp/pip-wheel-c5mc4o4a
2024-11-12T10:21:59,652   Building wheel for pyloopsage (setup.py): started
2024-11-12T10:21:59,653   Destination directory: /tmp/pip-wheel-c5mc4o4a
2024-11-12T10:21:59,654   Running command python setup.py bdist_wheel
2024-11-12T10:22:01,208   running bdist_wheel
2024-11-12T10:22:01,344   running build
2024-11-12T10:22:01,345   running build_py
2024-11-12T10:22:01,376   creating build/lib/loopsage
2024-11-12T10:22:01,379   copying loopsage/em.py -> build/lib/loopsage
2024-11-12T10:22:01,382   copying loopsage/plots.py -> build/lib/loopsage
2024-11-12T10:22:01,384   copying loopsage/initial_structures.py -> build/lib/loopsage
2024-11-12T10:22:01,387   copying loopsage/run.py -> build/lib/loopsage
2024-11-12T10:22:01,389   copying loopsage/__init__.py -> build/lib/loopsage
2024-11-12T10:22:01,391   copying loopsage/preproc.py -> build/lib/loopsage
2024-11-12T10:22:01,393   copying loopsage/vizualization_tools.py -> build/lib/loopsage
2024-11-12T10:22:01,396   copying loopsage/utils.py -> build/lib/loopsage
2024-11-12T10:22:01,399   copying loopsage/md.py -> build/lib/loopsage
2024-11-12T10:22:01,402   copying loopsage/args_definition.py -> build/lib/loopsage
2024-11-12T10:22:01,405   copying loopsage/stochastic_simulation.py -> build/lib/loopsage
2024-11-12T10:22:01,408   running egg_info
2024-11-12T10:22:01,436   writing pyLoopSage.egg-info/PKG-INFO
2024-11-12T10:22:01,441   writing dependency_links to pyLoopSage.egg-info/dependency_links.txt
2024-11-12T10:22:01,443   writing entry points to pyLoopSage.egg-info/entry_points.txt
2024-11-12T10:22:01,445   writing requirements to pyLoopSage.egg-info/requires.txt
2024-11-12T10:22:01,446   writing top-level names to pyLoopSage.egg-info/top_level.txt
2024-11-12T10:22:01,480   reading manifest file 'pyLoopSage.egg-info/SOURCES.txt'
2024-11-12T10:22:01,484   adding license file 'LICENSE'
2024-11-12T10:22:01,487   writing manifest file 'pyLoopSage.egg-info/SOURCES.txt'
2024-11-12T10:22:01,491   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'loopsage.forcefields' is absent from the `packages` configuration.
2024-11-12T10:22:01,492   !!

2024-11-12T10:22:01,493           ********************************************************************************
2024-11-12T10:22:01,493           ############################
2024-11-12T10:22:01,494           # Package would be ignored #
2024-11-12T10:22:01,494           ############################
2024-11-12T10:22:01,495           Python recognizes 'loopsage.forcefields' as an importable package[^1],
2024-11-12T10:22:01,495           but it is absent from setuptools' `packages` configuration.

2024-11-12T10:22:01,496           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-12T10:22:01,497           package, please make sure that 'loopsage.forcefields' is explicitly added
2024-11-12T10:22:01,497           to the `packages` configuration field.

2024-11-12T10:22:01,498           Alternatively, you can also rely on setuptools' discovery methods
2024-11-12T10:22:01,499           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-12T10:22:01,499           instead of `find_packages(...)`/`find:`).

2024-11-12T10:22:01,500           You can read more about "package discovery" on setuptools documentation page:

2024-11-12T10:22:01,501           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-12T10:22:01,503           If you don't want 'loopsage.forcefields' to be distributed and are
2024-11-12T10:22:01,503           already explicitly excluding 'loopsage.forcefields' via
2024-11-12T10:22:01,504           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-12T10:22:01,504           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-12T10:22:01,505           combination with a more fine grained `package-data` configuration.

2024-11-12T10:22:01,506           You can read more about "package data files" on setuptools documentation page:

2024-11-12T10:22:01,508           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-12T10:22:01,509           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-12T10:22:01,510                 even if it does not contain any `.py` files.
2024-11-12T10:22:01,511                 On the other hand, currently there is no concept of package data
2024-11-12T10:22:01,512                 directory, all directories are treated like packages.
2024-11-12T10:22:01,513           ********************************************************************************

2024-11-12T10:22:01,554   !!
2024-11-12T10:22:01,555     check.warn(importable)
2024-11-12T10:22:01,555   creating build/lib/loopsage/forcefields
2024-11-12T10:22:01,556   copying loopsage/forcefields/classic_sm_ff.xml -> build/lib/loopsage/forcefields
2024-11-12T10:22:01,575   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-12T10:22:01,575   !!

2024-11-12T10:22:01,577           ********************************************************************************
2024-11-12T10:22:01,578           Please avoid running ``setup.py`` directly.
2024-11-12T10:22:01,578           Instead, use pypa/build, pypa/installer or other
2024-11-12T10:22:01,579           standards-based tools.

2024-11-12T10:22:01,581           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-12T10:22:01,582           ********************************************************************************

2024-11-12T10:22:01,583   !!
2024-11-12T10:22:01,583     self.initialize_options()
2024-11-12T10:22:01,605   installing to build/bdist.linux-armv7l/wheel
2024-11-12T10:22:01,606   running install
2024-11-12T10:22:01,631   running install_lib
2024-11-12T10:22:01,662   creating build/bdist.linux-armv7l/wheel
2024-11-12T10:22:01,667   creating build/bdist.linux-armv7l/wheel/loopsage
2024-11-12T10:22:01,668   copying build/lib/loopsage/em.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,670   copying build/lib/loopsage/plots.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,673   copying build/lib/loopsage/initial_structures.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,675   copying build/lib/loopsage/run.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,678   copying build/lib/loopsage/__init__.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,680   copying build/lib/loopsage/preproc.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,683   copying build/lib/loopsage/vizualization_tools.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,686   copying build/lib/loopsage/utils.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,688   copying build/lib/loopsage/md.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,692   creating build/bdist.linux-armv7l/wheel/loopsage/forcefields
2024-11-12T10:22:01,693   copying build/lib/loopsage/forcefields/classic_sm_ff.xml -> build/bdist.linux-armv7l/wheel/./loopsage/forcefields
2024-11-12T10:22:01,695   copying build/lib/loopsage/args_definition.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,698   copying build/lib/loopsage/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/./loopsage
2024-11-12T10:22:01,700   running install_egg_info
2024-11-12T10:22:01,737   Copying pyLoopSage.egg-info to build/bdist.linux-armv7l/wheel/./pyLoopSage-1.0.15-py3.11.egg-info
2024-11-12T10:22:01,750   running install_scripts
2024-11-12T10:22:01,780   creating build/bdist.linux-armv7l/wheel/pyLoopSage-1.0.15.dist-info/WHEEL
2024-11-12T10:22:01,782   creating '/tmp/pip-wheel-c5mc4o4a/pyLoopSage-1.0.15-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-12T10:22:01,785   adding 'loopsage/__init__.py'
2024-11-12T10:22:01,787   adding 'loopsage/args_definition.py'
2024-11-12T10:22:01,789   adding 'loopsage/em.py'
2024-11-12T10:22:01,790   adding 'loopsage/initial_structures.py'
2024-11-12T10:22:01,795   adding 'loopsage/md.py'
2024-11-12T10:22:01,797   adding 'loopsage/plots.py'
2024-11-12T10:22:01,799   adding 'loopsage/preproc.py'
2024-11-12T10:22:01,800   adding 'loopsage/run.py'
2024-11-12T10:22:01,803   adding 'loopsage/stochastic_simulation.py'
2024-11-12T10:22:01,805   adding 'loopsage/utils.py'
2024-11-12T10:22:01,807   adding 'loopsage/vizualization_tools.py'
2024-11-12T10:22:01,810   adding 'loopsage/forcefields/classic_sm_ff.xml'
2024-11-12T10:22:01,817   adding 'pyLoopSage-1.0.15.dist-info/LICENSE'
2024-11-12T10:22:01,820   adding 'pyLoopSage-1.0.15.dist-info/METADATA'
2024-11-12T10:22:01,822   adding 'pyLoopSage-1.0.15.dist-info/WHEEL'
2024-11-12T10:22:01,823   adding 'pyLoopSage-1.0.15.dist-info/entry_points.txt'
2024-11-12T10:22:01,825   adding 'pyLoopSage-1.0.15.dist-info/top_level.txt'
2024-11-12T10:22:01,826   adding 'pyLoopSage-1.0.15.dist-info/RECORD'
2024-11-12T10:22:01,828   removing build/bdist.linux-armv7l/wheel
2024-11-12T10:22:01,945   Building wheel for pyloopsage (setup.py): finished with status 'done'
2024-11-12T10:22:01,948   Created wheel for pyloopsage: filename=pyLoopSage-1.0.15-py3-none-any.whl size=50409 sha256=48e01b2501714ecada636b1f533c03ee3ddf55d43bc374416a5c371d222135af
2024-11-12T10:22:01,949   Stored in directory: /tmp/pip-ephem-wheel-cache-efqn4y9v/wheels/e5/e6/b4/17a31ff766fb2776da159c8c1710fadf618574f022962e153f
2024-11-12T10:22:01,965 Successfully built pyloopsage
2024-11-12T10:22:01,970 Removed build tracker: '/tmp/pip-build-tracker-sajjyyi7'