2024-11-13T00:27:14,572 Created temporary directory: /tmp/pip-build-tracker-wggleugq
2024-11-13T00:27:14,573 Initialized build tracking at /tmp/pip-build-tracker-wggleugq
2024-11-13T00:27:14,574 Created build tracker: /tmp/pip-build-tracker-wggleugq
2024-11-13T00:27:14,574 Entered build tracker: /tmp/pip-build-tracker-wggleugq
2024-11-13T00:27:14,575 Created temporary directory: /tmp/pip-wheel-q3hvp8yk
2024-11-13T00:27:14,579 Created temporary directory: /tmp/pip-ephem-wheel-cache-l3q000k2
2024-11-13T00:27:14,624 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-13T00:27:14,627 2 location(s) to search for versions of topaz-em:
2024-11-13T00:27:14,627 * https://pypi.org/simple/topaz-em/
2024-11-13T00:27:14,627 * https://www.piwheels.org/simple/topaz-em/
2024-11-13T00:27:14,627 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/
2024-11-13T00:27:14,628 Getting page https://pypi.org/simple/topaz-em/
2024-11-13T00:27:14,630 Found index url https://pypi.org/simple/
2024-11-13T00:27:14,848 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json
2024-11-13T00:27:14,853   Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0
2024-11-13T00:27:14,853   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,854   Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1
2024-11-13T00:27:14,855   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,855   Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2
2024-11-13T00:27:14,856   Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3
2024-11-13T00:27:14,857   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,857   Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4
2024-11-13T00:27:14,858   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,858   Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0
2024-11-13T00:27:14,859   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,859   Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5
2024-11-13T00:27:14,860   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,861   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-13T00:27:14,861   Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0
2024-11-13T00:27:14,862 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/
2024-11-13T00:27:14,863 Getting page https://www.piwheels.org/simple/topaz-em/
2024-11-13T00:27:14,864 Found index url https://www.piwheels.org/simple/
2024-11-13T00:27:15,029 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html
2024-11-13T00:27:15,033   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,033   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,034   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,034   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,035   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,035   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,036   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/)
2024-11-13T00:27:15,036 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/
2024-11-13T00:27:15,037 Skipping link: not a file: https://pypi.org/simple/topaz-em/
2024-11-13T00:27:15,056 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates
2024-11-13T00:27:15,058 Collecting topaz-em==0.3.0
2024-11-13T00:27:15,060   Created temporary directory: /tmp/pip-unpack-n8p5gdwe
2024-11-13T00:27:15,716   Downloading topaz_em-0.3.0.tar.gz (48.2 MB)
2024-11-13T00:27:28,616   Added topaz-em==0.3.0 from https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-wggleugq'
2024-11-13T00:27:28,618   Running setup.py (path:/tmp/pip-wheel-q3hvp8yk/topaz-em_096e50c152004f2a8ff81a8555f6744f/setup.py) egg_info for package topaz-em
2024-11-13T00:27:28,619   Created temporary directory: /tmp/pip-pip-egg-info-pkf3qd6o
2024-11-13T00:27:28,620   Preparing metadata (setup.py): started
2024-11-13T00:27:28,621   Running command python setup.py egg_info
2024-11-13T00:27:29,764   running egg_info
2024-11-13T00:27:29,792   creating /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info
2024-11-13T00:27:29,793   writing /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/PKG-INFO
2024-11-13T00:27:29,797   writing dependency_links to /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/dependency_links.txt
2024-11-13T00:27:29,799   writing entry points to /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/entry_points.txt
2024-11-13T00:27:29,801   writing requirements to /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/requires.txt
2024-11-13T00:27:29,802   writing top-level names to /tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/top_level.txt
2024-11-13T00:27:29,804   writing manifest file '/tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/SOURCES.txt'
2024-11-13T00:27:29,900   reading manifest file '/tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/SOURCES.txt'
2024-11-13T00:27:29,902   reading manifest template 'MANIFEST.in'
2024-11-13T00:27:29,905   adding license file 'LICENSE'
2024-11-13T00:27:29,910   writing manifest file '/tmp/pip-pip-egg-info-pkf3qd6o/topaz_em.egg-info/SOURCES.txt'
2024-11-13T00:27:30,018   Preparing metadata (setup.py): finished with status 'done'
2024-11-13T00:27:30,022   Source in /tmp/pip-wheel-q3hvp8yk/topaz-em_096e50c152004f2a8ff81a8555f6744f has version 0.3.0, which satisfies requirement topaz-em==0.3.0 from https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz
2024-11-13T00:27:30,023   Removed topaz-em==0.3.0 from https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-wggleugq'
2024-11-13T00:27:30,029 Created temporary directory: /tmp/pip-unpack-hvm_4hf_
2024-11-13T00:27:30,030 Created temporary directory: /tmp/pip-unpack-w4d_6shm
2024-11-13T00:27:30,031 Building wheels for collected packages: topaz-em
2024-11-13T00:27:30,035   Created temporary directory: /tmp/pip-wheel-f2cw426p
2024-11-13T00:27:30,035   Building wheel for topaz-em (setup.py): started
2024-11-13T00:27:30,037   Destination directory: /tmp/pip-wheel-f2cw426p
2024-11-13T00:27:30,037   Running command python setup.py bdist_wheel
2024-11-13T00:27:31,068   running bdist_wheel
2024-11-13T00:27:31,201   running build
2024-11-13T00:27:31,201   running build_py
2024-11-13T00:27:31,231   creating build/lib/topaz
2024-11-13T00:27:31,234   copying topaz/methods.py -> build/lib/topaz
2024-11-13T00:27:31,236   copying topaz/algorithms.py -> build/lib/topaz
2024-11-13T00:27:31,238   copying topaz/denoise.py -> build/lib/topaz
2024-11-13T00:27:31,241   copying topaz/training.py -> build/lib/topaz
2024-11-13T00:27:31,244   copying topaz/torch.py -> build/lib/topaz
2024-11-13T00:27:31,246   copying topaz/metrics.py -> build/lib/topaz
2024-11-13T00:27:31,249   copying topaz/__init__.py -> build/lib/topaz
2024-11-13T00:27:31,250   copying topaz/predict.py -> build/lib/topaz
2024-11-13T00:27:31,252   copying topaz/stats.py -> build/lib/topaz
2024-11-13T00:27:31,255   copying topaz/extract.py -> build/lib/topaz
2024-11-13T00:27:31,257   copying topaz/cuda.py -> build/lib/topaz
2024-11-13T00:27:31,259   copying topaz/mrc.py -> build/lib/topaz
2024-11-13T00:27:31,262   copying topaz/main.py -> build/lib/topaz
2024-11-13T00:27:31,264   copying topaz/filters.py -> build/lib/topaz
2024-11-13T00:27:31,266   copying topaz/_version.py -> build/lib/topaz
2024-11-13T00:27:31,269   creating build/lib/topaz/commands
2024-11-13T00:27:31,270   copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
2024-11-13T00:27:31,271   copying topaz/commands/denoise3d.py -> build/lib/topaz/commands
2024-11-13T00:27:31,274   copying topaz/commands/gui.py -> build/lib/topaz/commands
2024-11-13T00:27:31,276   copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
2024-11-13T00:27:31,278   copying topaz/commands/denoise.py -> build/lib/topaz/commands
2024-11-13T00:27:31,280   copying topaz/commands/split.py -> build/lib/topaz/commands
2024-11-13T00:27:31,282   copying topaz/commands/preprocess.py -> build/lib/topaz/commands
2024-11-13T00:27:31,284   copying topaz/commands/convert.py -> build/lib/topaz/commands
2024-11-13T00:27:31,287   copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
2024-11-13T00:27:31,288   copying topaz/commands/__init__.py -> build/lib/topaz/commands
2024-11-13T00:27:31,290   copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
2024-11-13T00:27:31,292   copying topaz/commands/extract.py -> build/lib/topaz/commands
2024-11-13T00:27:31,294   copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
2024-11-13T00:27:31,296   copying topaz/commands/downsample.py -> build/lib/topaz/commands
2024-11-13T00:27:31,298   copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
2024-11-13T00:27:31,299   copying topaz/commands/normalize.py -> build/lib/topaz/commands
2024-11-13T00:27:31,302   copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
2024-11-13T00:27:31,303   copying topaz/commands/segment.py -> build/lib/topaz/commands
2024-11-13T00:27:31,305   copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
2024-11-13T00:27:31,307   copying topaz/commands/train.py -> build/lib/topaz/commands
2024-11-13T00:27:31,309   copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
2024-11-13T00:27:31,311   copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
2024-11-13T00:27:31,313   creating build/lib/topaz/utils
2024-11-13T00:27:31,314   copying topaz/utils/conversions.py -> build/lib/topaz/utils
2024-11-13T00:27:31,317   copying topaz/utils/__init__.py -> build/lib/topaz/utils
2024-11-13T00:27:31,318   copying topaz/utils/star.py -> build/lib/topaz/utils
2024-11-13T00:27:31,320   copying topaz/utils/picks.py -> build/lib/topaz/utils
2024-11-13T00:27:31,322   copying topaz/utils/printing.py -> build/lib/topaz/utils
2024-11-13T00:27:31,325   copying topaz/utils/files.py -> build/lib/topaz/utils
2024-11-13T00:27:31,327   copying topaz/utils/image.py -> build/lib/topaz/utils
2024-11-13T00:27:31,330   creating build/lib/topaz/model
2024-11-13T00:27:31,331   copying topaz/model/__init__.py -> build/lib/topaz/model
2024-11-13T00:27:31,333   copying topaz/model/classifier.py -> build/lib/topaz/model
2024-11-13T00:27:31,335   copying topaz/model/factory.py -> build/lib/topaz/model
2024-11-13T00:27:31,336   copying topaz/model/generative.py -> build/lib/topaz/model
2024-11-13T00:27:31,338   copying topaz/model/utils.py -> build/lib/topaz/model
2024-11-13T00:27:31,341   creating build/lib/topaz/denoising
2024-11-13T00:27:31,342   copying topaz/denoising/__init__.py -> build/lib/topaz/denoising
2024-11-13T00:27:31,344   copying topaz/denoising/datasets.py -> build/lib/topaz/denoising
2024-11-13T00:27:31,347   copying topaz/denoising/models.py -> build/lib/topaz/denoising
2024-11-13T00:27:31,349   copying topaz/denoising/utils.py -> build/lib/topaz/denoising
2024-11-13T00:27:31,352   creating build/lib/topaz/transform
2024-11-13T00:27:31,353   copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
2024-11-13T00:27:31,355   copying topaz/transform/__init__.py -> build/lib/topaz/transform
2024-11-13T00:27:31,358   creating build/lib/topaz/utils/data
2024-11-13T00:27:31,359   copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,362   copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,363   copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,365   copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,368   copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,369   copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,372   copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
2024-11-13T00:27:31,375   creating build/lib/topaz/model/features
2024-11-13T00:27:31,376   copying topaz/model/features/msnet.py -> build/lib/topaz/model/features
2024-11-13T00:27:31,379   copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
2024-11-13T00:27:31,381   copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
2024-11-13T00:27:31,383   copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
2024-11-13T00:27:31,385   copying topaz/model/features/basic.py -> build/lib/topaz/model/features
2024-11-13T00:27:31,386   running egg_info
2024-11-13T00:27:31,414   writing topaz_em.egg-info/PKG-INFO
2024-11-13T00:27:31,417   writing dependency_links to topaz_em.egg-info/dependency_links.txt
2024-11-13T00:27:31,418   writing entry points to topaz_em.egg-info/entry_points.txt
2024-11-13T00:27:31,419   writing requirements to topaz_em.egg-info/requires.txt
2024-11-13T00:27:31,420   writing top-level names to topaz_em.egg-info/top_level.txt
2024-11-13T00:27:31,461   reading manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-11-13T00:27:31,467   reading manifest template 'MANIFEST.in'
2024-11-13T00:27:31,469   adding license file 'LICENSE'
2024-11-13T00:27:31,475   writing manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-11-13T00:27:31,478   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration.
2024-11-13T00:27:31,478   !!

2024-11-13T00:27:31,479           ********************************************************************************
2024-11-13T00:27:31,479           ############################
2024-11-13T00:27:31,480           # Package would be ignored #
2024-11-13T00:27:31,480           ############################
2024-11-13T00:27:31,481           Python recognizes 'topaz.gui' as an importable package[^1],
2024-11-13T00:27:31,481           but it is absent from setuptools' `packages` configuration.

2024-11-13T00:27:31,482           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-13T00:27:31,483           package, please make sure that 'topaz.gui' is explicitly added
2024-11-13T00:27:31,483           to the `packages` configuration field.

2024-11-13T00:27:31,484           Alternatively, you can also rely on setuptools' discovery methods
2024-11-13T00:27:31,485           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-13T00:27:31,485           instead of `find_packages(...)`/`find:`).

2024-11-13T00:27:31,486           You can read more about "package discovery" on setuptools documentation page:

2024-11-13T00:27:31,487           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-13T00:27:31,489           If you don't want 'topaz.gui' to be distributed and are
2024-11-13T00:27:31,489           already explicitly excluding 'topaz.gui' via
2024-11-13T00:27:31,489           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-13T00:27:31,490           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-13T00:27:31,490           combination with a more fine grained `package-data` configuration.

2024-11-13T00:27:31,491           You can read more about "package data files" on setuptools documentation page:

2024-11-13T00:27:31,492           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-13T00:27:31,494           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-13T00:27:31,497                 even if it does not contain any `.py` files.
2024-11-13T00:27:31,499                 On the other hand, currently there is no concept of package data
2024-11-13T00:27:31,500                 directory, all directories are treated like packages.
2024-11-13T00:27:31,500           ********************************************************************************

2024-11-13T00:27:31,501   !!
2024-11-13T00:27:31,502     check.warn(importable)
2024-11-13T00:27:31,502   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration.
2024-11-13T00:27:31,503   !!

2024-11-13T00:27:31,504           ********************************************************************************
2024-11-13T00:27:31,504           ############################
2024-11-13T00:27:31,505           # Package would be ignored #
2024-11-13T00:27:31,505           ############################
2024-11-13T00:27:31,505           Python recognizes 'topaz.pretrained.denoise' as an importable package[^1],
2024-11-13T00:27:31,506           but it is absent from setuptools' `packages` configuration.

2024-11-13T00:27:31,507           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-13T00:27:31,507           package, please make sure that 'topaz.pretrained.denoise' is explicitly added
2024-11-13T00:27:31,507           to the `packages` configuration field.

2024-11-13T00:27:31,509           Alternatively, you can also rely on setuptools' discovery methods
2024-11-13T00:27:31,509           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-13T00:27:31,509           instead of `find_packages(...)`/`find:`).

2024-11-13T00:27:31,510           You can read more about "package discovery" on setuptools documentation page:

2024-11-13T00:27:31,511           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-13T00:27:31,512           If you don't want 'topaz.pretrained.denoise' to be distributed and are
2024-11-13T00:27:31,512           already explicitly excluding 'topaz.pretrained.denoise' via
2024-11-13T00:27:31,513           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-13T00:27:31,513           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-13T00:27:31,514           combination with a more fine grained `package-data` configuration.

2024-11-13T00:27:31,515           You can read more about "package data files" on setuptools documentation page:

2024-11-13T00:27:31,516           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-13T00:27:31,524           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-13T00:27:31,526                 even if it does not contain any `.py` files.
2024-11-13T00:27:31,532                 On the other hand, currently there is no concept of package data
2024-11-13T00:27:31,539                 directory, all directories are treated like packages.
2024-11-13T00:27:31,540           ********************************************************************************

2024-11-13T00:27:31,541   !!
2024-11-13T00:27:31,542     check.warn(importable)
2024-11-13T00:27:31,542   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration.
2024-11-13T00:27:31,543   !!

2024-11-13T00:27:31,544           ********************************************************************************
2024-11-13T00:27:31,544           ############################
2024-11-13T00:27:31,545           # Package would be ignored #
2024-11-13T00:27:31,545           ############################
2024-11-13T00:27:31,546           Python recognizes 'topaz.pretrained.detector' as an importable package[^1],
2024-11-13T00:27:31,547           but it is absent from setuptools' `packages` configuration.

2024-11-13T00:27:31,548           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-13T00:27:31,548           package, please make sure that 'topaz.pretrained.detector' is explicitly added
2024-11-13T00:27:31,549           to the `packages` configuration field.

2024-11-13T00:27:31,550           Alternatively, you can also rely on setuptools' discovery methods
2024-11-13T00:27:31,550           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-13T00:27:31,551           instead of `find_packages(...)`/`find:`).

2024-11-13T00:27:31,552           You can read more about "package discovery" on setuptools documentation page:

2024-11-13T00:27:31,554           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-13T00:27:31,554           If you don't want 'topaz.pretrained.detector' to be distributed and are
2024-11-13T00:27:31,555           already explicitly excluding 'topaz.pretrained.detector' via
2024-11-13T00:27:31,555           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-13T00:27:31,556           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-13T00:27:31,557           combination with a more fine grained `package-data` configuration.

2024-11-13T00:27:31,557           You can read more about "package data files" on setuptools documentation page:

2024-11-13T00:27:31,558           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-13T00:27:31,560           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-13T00:27:31,560                 even if it does not contain any `.py` files.
2024-11-13T00:27:31,560                 On the other hand, currently there is no concept of package data
2024-11-13T00:27:31,561                 directory, all directories are treated like packages.
2024-11-13T00:27:31,561           ********************************************************************************

2024-11-13T00:27:31,562   !!
2024-11-13T00:27:31,563     check.warn(importable)
2024-11-13T00:27:31,563   creating build/lib/topaz/gui
2024-11-13T00:27:31,564   copying topaz/gui/topaz.html -> build/lib/topaz/gui
2024-11-13T00:27:31,564   creating build/lib/topaz/pretrained/denoise
2024-11-13T00:27:31,564   copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:31,565   copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:31,565   copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:31,780   copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:31,947   copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:32,832   copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:33,001   copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-13T00:27:33,711   creating build/lib/topaz/pretrained/detector
2024-11-13T00:27:33,713   copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector
2024-11-13T00:27:33,771   copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector
2024-11-13T00:27:33,875   copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector
2024-11-13T00:27:33,900   copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector
2024-11-13T00:27:34,053   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-13T00:27:34,053   !!

2024-11-13T00:27:34,055           ********************************************************************************
2024-11-13T00:27:34,055           Please avoid running ``setup.py`` directly.
2024-11-13T00:27:34,056           Instead, use pypa/build, pypa/installer or other
2024-11-13T00:27:34,056           standards-based tools.

2024-11-13T00:27:34,057           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-13T00:27:34,058           ********************************************************************************

2024-11-13T00:27:34,059   !!
2024-11-13T00:27:34,059     self.initialize_options()
2024-11-13T00:27:34,080   installing to build/bdist.linux-armv7l/wheel
2024-11-13T00:27:34,081   running install
2024-11-13T00:27:34,105   running install_lib
2024-11-13T00:27:34,133   creating build/bdist.linux-armv7l/wheel
2024-11-13T00:27:34,135   creating build/bdist.linux-armv7l/wheel/topaz
2024-11-13T00:27:34,137   creating build/bdist.linux-armv7l/wheel/topaz/commands
2024-11-13T00:27:34,139   copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,140   copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,143   copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,144   copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,146   copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,149   copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,150   copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,152   copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,154   copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,156   copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,157   copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,159   copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,161   copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,163   copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,165   copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,167   copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,169   copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,171   copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,173   copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,174   copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,177   copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,179   copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-13T00:27:34,180   copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,183   copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,185   copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,188   copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,191   copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,193   copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,195   copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,197   copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:34,199   creating build/bdist.linux-armv7l/wheel/topaz/pretrained
2024-11-13T00:27:34,201   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector
2024-11-13T00:27:34,202   copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-13T00:27:34,327   copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-13T00:27:34,358   copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-13T00:27:37,546   copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-13T00:27:37,584   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
2024-11-13T00:27:37,586   copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:37,868   copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:39,402   copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:39,823   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:39,942   copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:39,946   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:40,080   copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-13T00:27:40,136   copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,140   copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,144   creating build/bdist.linux-armv7l/wheel/topaz/utils
2024-11-13T00:27:40,145   copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,148   copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,150   copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,155   creating build/bdist.linux-armv7l/wheel/topaz/utils/data
2024-11-13T00:27:40,157   copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,160   copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,163   copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,165   copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,168   copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,171   copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,175   copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-13T00:27:40,177   copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,180   copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,183   copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,186   copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-13T00:27:40,190   creating build/bdist.linux-armv7l/wheel/topaz/gui
2024-11-13T00:27:40,192   copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui
2024-11-13T00:27:40,209   copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,212   copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,216   creating build/bdist.linux-armv7l/wheel/topaz/model
2024-11-13T00:27:40,218   creating build/bdist.linux-armv7l/wheel/topaz/model/features
2024-11-13T00:27:40,221   copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-13T00:27:40,225   copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-13T00:27:40,228   copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-13T00:27:40,230   copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-13T00:27:40,233   copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-13T00:27:40,236   copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-13T00:27:40,238   copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-13T00:27:40,241   copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-13T00:27:40,244   copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-13T00:27:40,247   copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-13T00:27:40,251   copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,256   copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,260   creating build/bdist.linux-armv7l/wheel/topaz/denoising
2024-11-13T00:27:40,262   copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-13T00:27:40,265   copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-13T00:27:40,270   copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-13T00:27:40,274   copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-13T00:27:40,278   copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-13T00:27:40,282   creating build/bdist.linux-armv7l/wheel/topaz/transform
2024-11-13T00:27:40,284   copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-11-13T00:27:40,289   copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-11-13T00:27:40,291   running install_egg_info
2024-11-13T00:27:40,346   Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.0-py3.11.egg-info
2024-11-13T00:27:40,366   running install_scripts
2024-11-13T00:27:40,391   creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.0.dist-info/WHEEL
2024-11-13T00:27:40,394   creating '/tmp/pip-wheel-f2cw426p/topaz_em-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-13T00:27:40,398   adding 'topaz/__init__.py'
2024-11-13T00:27:40,399   adding 'topaz/_version.py'
2024-11-13T00:27:40,401   adding 'topaz/algorithms.py'
2024-11-13T00:27:40,402   adding 'topaz/cuda.py'
2024-11-13T00:27:40,406   adding 'topaz/denoise.py'
2024-11-13T00:27:40,409   adding 'topaz/extract.py'
2024-11-13T00:27:40,410   adding 'topaz/filters.py'
2024-11-13T00:27:40,412   adding 'topaz/main.py'
2024-11-13T00:27:40,414   adding 'topaz/methods.py'
2024-11-13T00:27:40,416   adding 'topaz/metrics.py'
2024-11-13T00:27:40,419   adding 'topaz/mrc.py'
2024-11-13T00:27:40,421   adding 'topaz/predict.py'
2024-11-13T00:27:40,423   adding 'topaz/stats.py'
2024-11-13T00:27:40,425   adding 'topaz/torch.py'
2024-11-13T00:27:40,429   adding 'topaz/training.py'
2024-11-13T00:27:40,431   adding 'topaz/commands/__init__.py'
2024-11-13T00:27:40,433   adding 'topaz/commands/boxes_to_coordinates.py'
2024-11-13T00:27:40,435   adding 'topaz/commands/convert.py'
2024-11-13T00:27:40,437   adding 'topaz/commands/coordinates_to_boxes.py'
2024-11-13T00:27:40,439   adding 'topaz/commands/coordinates_to_eman2_json.py'
2024-11-13T00:27:40,441   adding 'topaz/commands/coordinates_to_star.py'
2024-11-13T00:27:40,443   adding 'topaz/commands/denoise.py'
2024-11-13T00:27:40,445   adding 'topaz/commands/denoise3d.py'
2024-11-13T00:27:40,447   adding 'topaz/commands/downsample.py'
2024-11-13T00:27:40,448   adding 'topaz/commands/extract.py'
2024-11-13T00:27:40,450   adding 'topaz/commands/gui.py'
2024-11-13T00:27:40,451   adding 'topaz/commands/normalize.py'
2024-11-13T00:27:40,453   adding 'topaz/commands/particle_stack.py'
2024-11-13T00:27:40,454   adding 'topaz/commands/precision_recall_curve.py'
2024-11-13T00:27:40,456   adding 'topaz/commands/preprocess.py'
2024-11-13T00:27:40,457   adding 'topaz/commands/scale_coordinates.py'
2024-11-13T00:27:40,459   adding 'topaz/commands/segment.py'
2024-11-13T00:27:40,460   adding 'topaz/commands/split.py'
2024-11-13T00:27:40,462   adding 'topaz/commands/star_particles_threshold.py'
2024-11-13T00:27:40,463   adding 'topaz/commands/star_to_coordinates.py'
2024-11-13T00:27:40,465   adding 'topaz/commands/train.py'
2024-11-13T00:27:40,466   adding 'topaz/commands/train_test_split.py'
2024-11-13T00:27:40,468   adding 'topaz/denoising/__init__.py'
2024-11-13T00:27:40,470   adding 'topaz/denoising/datasets.py'
2024-11-13T00:27:40,473   adding 'topaz/denoising/models.py'
2024-11-13T00:27:40,474   adding 'topaz/denoising/utils.py'
2024-11-13T00:27:40,528   adding 'topaz/gui/topaz.html'
2024-11-13T00:27:40,534   adding 'topaz/model/__init__.py'
2024-11-13T00:27:40,535   adding 'topaz/model/classifier.py'
2024-11-13T00:27:40,536   adding 'topaz/model/factory.py'
2024-11-13T00:27:40,538   adding 'topaz/model/generative.py'
2024-11-13T00:27:40,539   adding 'topaz/model/utils.py'
2024-11-13T00:27:40,541   adding 'topaz/model/features/__init__.py'
2024-11-13T00:27:40,542   adding 'topaz/model/features/basic.py'
2024-11-13T00:27:40,544   adding 'topaz/model/features/densenet.py'
2024-11-13T00:27:40,546   adding 'topaz/model/features/msnet.py'
2024-11-13T00:27:40,548   adding 'topaz/model/features/resnet.py'
2024-11-13T00:27:40,551   adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav'
2024-11-13T00:27:40,855   adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav'
2024-11-13T00:27:42,647   adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav'
2024-11-13T00:27:44,499   adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav'
2024-11-13T00:27:45,163   adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav'
2024-11-13T00:27:45,910   adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav'
2024-11-13T00:27:46,338   adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav'
2024-11-13T00:27:46,632   adding 'topaz/pretrained/detector/resnet16_u32.sav'
2024-11-13T00:27:47,758   adding 'topaz/pretrained/detector/resnet16_u64.sav'
2024-11-13T00:27:48,003   adding 'topaz/pretrained/detector/resnet8_u32.sav'
2024-11-13T00:27:48,816   adding 'topaz/pretrained/detector/resnet8_u64.sav'
2024-11-13T00:27:48,879   adding 'topaz/transform/__init__.py'
2024-11-13T00:27:48,881   adding 'topaz/transform/scaled_gaussian_mixture.py'
2024-11-13T00:27:48,882   adding 'topaz/utils/__init__.py'
2024-11-13T00:27:48,884   adding 'topaz/utils/conversions.py'
2024-11-13T00:27:48,886   adding 'topaz/utils/files.py'
2024-11-13T00:27:48,888   adding 'topaz/utils/image.py'
2024-11-13T00:27:48,889   adding 'topaz/utils/picks.py'
2024-11-13T00:27:48,891   adding 'topaz/utils/printing.py'
2024-11-13T00:27:48,892   adding 'topaz/utils/star.py'
2024-11-13T00:27:48,894   adding 'topaz/utils/data/__init__.py'
2024-11-13T00:27:48,895   adding 'topaz/utils/data/coordinates.py'
2024-11-13T00:27:48,897   adding 'topaz/utils/data/loader.py'
2024-11-13T00:27:48,900   adding 'topaz/utils/data/memory_mapped_data.py'
2024-11-13T00:27:48,901   adding 'topaz/utils/data/partition.py'
2024-11-13T00:27:48,903   adding 'topaz/utils/data/sampler.py'
2024-11-13T00:27:48,904   adding 'topaz/utils/data/train_test_split_micrographs.py'
2024-11-13T00:27:48,911   adding 'topaz_em-0.3.0.dist-info/LICENSE'
2024-11-13T00:27:48,912   adding 'topaz_em-0.3.0.dist-info/METADATA'
2024-11-13T00:27:48,913   adding 'topaz_em-0.3.0.dist-info/WHEEL'
2024-11-13T00:27:48,914   adding 'topaz_em-0.3.0.dist-info/entry_points.txt'
2024-11-13T00:27:48,915   adding 'topaz_em-0.3.0.dist-info/top_level.txt'
2024-11-13T00:27:48,917   adding 'topaz_em-0.3.0.dist-info/RECORD'
2024-11-13T00:27:49,555   removing build/bdist.linux-armv7l/wheel
2024-11-13T00:27:49,714   Building wheel for topaz-em (setup.py): finished with status 'done'
2024-11-13T00:27:50,191   Created wheel for topaz-em: filename=topaz_em-0.3.0-py3-none-any.whl size=48203275 sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8
2024-11-13T00:27:50,193   Stored in directory: /tmp/pip-ephem-wheel-cache-l3q000k2/wheels/93/aa/a9/740c11023d62664467dfd04236827accc5af2a30a2bec3d1d8
2024-11-13T00:27:50,221 Successfully built topaz-em
2024-11-13T00:27:53,737 Removed build tracker: '/tmp/pip-build-tracker-wggleugq'