2024-11-13T01:31:45,417 Created temporary directory: /tmp/pip-build-tracker-q7lxblxd 2024-11-13T01:31:45,418 Initialized build tracking at /tmp/pip-build-tracker-q7lxblxd 2024-11-13T01:31:45,419 Created build tracker: /tmp/pip-build-tracker-q7lxblxd 2024-11-13T01:31:45,419 Entered build tracker: /tmp/pip-build-tracker-q7lxblxd 2024-11-13T01:31:45,420 Created temporary directory: /tmp/pip-wheel-3k0p84hq 2024-11-13T01:31:45,424 Created temporary directory: /tmp/pip-ephem-wheel-cache-9a8dsm0a 2024-11-13T01:31:45,469 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-13T01:31:45,471 2 location(s) to search for versions of sigprofilerassignment: 2024-11-13T01:31:45,471 * https://pypi.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,471 * https://www.piwheels.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,472 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,473 Getting page https://pypi.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,475 Found index url https://pypi.org/simple/ 2024-11-13T01:31:45,697 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2024-11-13T01:31:45,713 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,714 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2024-11-13T01:31:45,715 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,715 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2024-11-13T01:31:45,716 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,717 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2024-11-13T01:31:45,717 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,718 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2024-11-13T01:31:45,719 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,719 Found link 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https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,722 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2024-11-13T01:31:45,723 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/8d/ce/b3007d83ebaad0c5f16d68fc825dcce815d70081f135a950caf8b6a21972/SigProfilerAssignment-0.0.9-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,723 Found link https://files.pythonhosted.org/packages/5e/3a/5f620dd06f38b080d13d9c07487b1f927908e895c6d0078fd31e1774d819/SigProfilerAssignment-0.0.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.9 2024-11-13T01:31:45,724 Skipping link: No binaries permitted for sigprofilerassignment: 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https://pypi.org/simple/sigprofilerassignment/) 2024-11-13T01:31:45,766 Found link https://files.pythonhosted.org/packages/93/d7/e50e7f69ae70ac01975521b66c275731cd1f6da14952b70c4dda9ea99652/sigprofilerassignment-0.1.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.9 2024-11-13T01:31:45,767 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,767 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2024-11-13T01:31:45,769 Found index url https://www.piwheels.org/simple/ 2024-11-13T01:31:45,969 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2024-11-13T01:31:45,980 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.1.8-py3-none-any.whl#sha256=eeaa253c4a0f9988be72d3de7b6311d83dc5b11b88fa384132fe74b0cba003ba (from 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https://www.piwheels.org/simple/sigprofilerassignment/) 2024-11-13T01:31:46,001 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-11-13T01:31:46,001 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-11-13T01:31:46,002 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-11-13T01:31:46,003 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-11-13T01:31:46,003 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-11-13T01:31:46,004 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2024-11-13T01:31:46,027 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2024-11-13T01:31:46,029 Collecting sigprofilerassignment==0.1.9 2024-11-13T01:31:46,031 Created temporary directory: /tmp/pip-unpack-caxo3pa5 2024-11-13T01:31:46,272 Downloading sigprofilerassignment-0.1.9.tar.gz (5.4 MB) 2024-11-13T01:31:47,597 Added sigprofilerassignment==0.1.9 from https://files.pythonhosted.org/packages/93/d7/e50e7f69ae70ac01975521b66c275731cd1f6da14952b70c4dda9ea99652/sigprofilerassignment-0.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-q7lxblxd' 2024-11-13T01:31:47,599 Running setup.py (path:/tmp/pip-wheel-3k0p84hq/sigprofilerassignment_933f51c1cc3546109837a47aa630bf18/setup.py) egg_info for package sigprofilerassignment 2024-11-13T01:31:47,600 Created temporary directory: /tmp/pip-pip-egg-info-vz9_ldiw 2024-11-13T01:31:47,601 Preparing metadata (setup.py): started 2024-11-13T01:31:47,602 Running command python setup.py egg_info 2024-11-13T01:31:48,661 running egg_info 2024-11-13T01:31:48,689 creating /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info 2024-11-13T01:31:48,691 writing /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/PKG-INFO 2024-11-13T01:31:48,695 writing dependency_links to /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/dependency_links.txt 2024-11-13T01:31:48,697 writing entry points to /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/entry_points.txt 2024-11-13T01:31:48,699 writing requirements to /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/requires.txt 2024-11-13T01:31:48,700 writing top-level names to /tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/top_level.txt 2024-11-13T01:31:48,701 writing manifest file '/tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-11-13T01:31:48,789 reading manifest file '/tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-11-13T01:31:48,791 reading manifest template 'MANIFEST.in' 2024-11-13T01:31:48,806 adding license file 'LICENSE.txt' 2024-11-13T01:31:48,815 writing manifest file '/tmp/pip-pip-egg-info-vz9_ldiw/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-11-13T01:31:48,925 Preparing metadata (setup.py): finished with status 'done' 2024-11-13T01:31:48,929 Source in /tmp/pip-wheel-3k0p84hq/sigprofilerassignment_933f51c1cc3546109837a47aa630bf18 has version 0.1.9, which satisfies requirement sigprofilerassignment==0.1.9 from https://files.pythonhosted.org/packages/93/d7/e50e7f69ae70ac01975521b66c275731cd1f6da14952b70c4dda9ea99652/sigprofilerassignment-0.1.9.tar.gz 2024-11-13T01:31:48,930 Removed sigprofilerassignment==0.1.9 from https://files.pythonhosted.org/packages/93/d7/e50e7f69ae70ac01975521b66c275731cd1f6da14952b70c4dda9ea99652/sigprofilerassignment-0.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-q7lxblxd' 2024-11-13T01:31:48,937 Created temporary directory: /tmp/pip-unpack-uquc9ecp 2024-11-13T01:31:48,938 Created temporary directory: /tmp/pip-unpack-k34ancnd 2024-11-13T01:31:48,939 Building wheels for collected packages: sigprofilerassignment 2024-11-13T01:31:48,943 Created temporary directory: /tmp/pip-wheel-8wr6raw4 2024-11-13T01:31:48,943 Building wheel for sigprofilerassignment (setup.py): started 2024-11-13T01:31:48,944 Destination directory: /tmp/pip-wheel-8wr6raw4 2024-11-13T01:31:48,945 Running command python setup.py bdist_wheel 2024-11-13T01:31:49,947 running bdist_wheel 2024-11-13T01:31:50,077 running build 2024-11-13T01:31:50,077 running build_py 2024-11-13T01:31:50,107 creating build/lib/SigProfilerAssignment 2024-11-13T01:31:50,109 copying SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,111 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,114 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,116 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,119 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,122 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,124 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2024-11-13T01:31:50,126 running egg_info 2024-11-13T01:31:50,153 writing SigProfilerAssignment.egg-info/PKG-INFO 2024-11-13T01:31:50,157 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2024-11-13T01:31:50,159 writing entry points to SigProfilerAssignment.egg-info/entry_points.txt 2024-11-13T01:31:50,160 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2024-11-13T01:31:50,162 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2024-11-13T01:31:50,195 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-11-13T01:31:50,210 reading manifest template 'MANIFEST.in' 2024-11-13T01:31:50,221 adding license file 'LICENSE.txt' 2024-11-13T01:31:50,232 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-11-13T01:31:50,236 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2024-11-13T01:31:50,236 !! 2024-11-13T01:31:50,238 ******************************************************************************** 2024-11-13T01:31:50,239 ############################ 2024-11-13T01:31:50,239 # Package would be ignored # 2024-11-13T01:31:50,240 ############################ 2024-11-13T01:31:50,241 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2024-11-13T01:31:50,242 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,243 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,244 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2024-11-13T01:31:50,244 to the `packages` configuration field. 2024-11-13T01:31:50,246 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,247 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,248 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,251 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2024-11-13T01:31:50,252 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2024-11-13T01:31:50,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,262 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,263 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,264 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,265 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,266 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,267 even if it does not contain any `.py` files. 2024-11-13T01:31:50,267 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,268 directory, all directories are treated like packages. 2024-11-13T01:31:50,268 ******************************************************************************** 2024-11-13T01:31:50,269 !! 2024-11-13T01:31:50,270 check.warn(importable) 2024-11-13T01:31:50,270 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2024-11-13T01:31:50,271 !! 2024-11-13T01:31:50,272 ******************************************************************************** 2024-11-13T01:31:50,272 ############################ 2024-11-13T01:31:50,273 # Package would be ignored # 2024-11-13T01:31:50,273 ############################ 2024-11-13T01:31:50,274 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2024-11-13T01:31:50,275 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,276 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,277 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2024-11-13T01:31:50,277 to the `packages` configuration field. 2024-11-13T01:31:50,278 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,279 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,280 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,281 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,283 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2024-11-13T01:31:50,284 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2024-11-13T01:31:50,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,286 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,287 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,290 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,291 even if it does not contain any `.py` files. 2024-11-13T01:31:50,291 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,292 directory, all directories are treated like packages. 2024-11-13T01:31:50,293 ******************************************************************************** 2024-11-13T01:31:50,294 !! 2024-11-13T01:31:50,295 check.warn(importable) 2024-11-13T01:31:50,295 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2024-11-13T01:31:50,296 !! 2024-11-13T01:31:50,296 ******************************************************************************** 2024-11-13T01:31:50,297 ############################ 2024-11-13T01:31:50,297 # Package would be ignored # 2024-11-13T01:31:50,298 ############################ 2024-11-13T01:31:50,298 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2024-11-13T01:31:50,299 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,300 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,300 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2024-11-13T01:31:50,301 to the `packages` configuration field. 2024-11-13T01:31:50,302 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,302 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,303 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,304 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,305 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,307 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2024-11-13T01:31:50,308 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2024-11-13T01:31:50,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,310 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,311 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,314 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,315 even if it does not contain any `.py` files. 2024-11-13T01:31:50,315 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,316 directory, all directories are treated like packages. 2024-11-13T01:31:50,316 ******************************************************************************** 2024-11-13T01:31:50,318 !! 2024-11-13T01:31:50,318 check.warn(importable) 2024-11-13T01:31:50,319 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.controllers' is absent from the `packages` configuration. 2024-11-13T01:31:50,319 !! 2024-11-13T01:31:50,320 ******************************************************************************** 2024-11-13T01:31:50,321 ############################ 2024-11-13T01:31:50,322 # Package would be ignored # 2024-11-13T01:31:50,322 ############################ 2024-11-13T01:31:50,323 Python recognizes 'SigProfilerAssignment.controllers' as an importable package[^1], 2024-11-13T01:31:50,323 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,325 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,325 package, please make sure that 'SigProfilerAssignment.controllers' is explicitly added 2024-11-13T01:31:50,326 to the `packages` configuration field. 2024-11-13T01:31:50,339 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,340 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,341 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,343 If you don't want 'SigProfilerAssignment.controllers' to be distributed and are 2024-11-13T01:31:50,344 already explicitly excluding 'SigProfilerAssignment.controllers' via 2024-11-13T01:31:50,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,345 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,345 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,346 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,347 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,349 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,349 even if it does not contain any `.py` files. 2024-11-13T01:31:50,350 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,350 directory, all directories are treated like packages. 2024-11-13T01:31:50,351 ******************************************************************************** 2024-11-13T01:31:50,352 !! 2024-11-13T01:31:50,352 check.warn(importable) 2024-11-13T01:31:50,353 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2024-11-13T01:31:50,353 !! 2024-11-13T01:31:50,354 ******************************************************************************** 2024-11-13T01:31:50,355 ############################ 2024-11-13T01:31:50,355 # Package would be ignored # 2024-11-13T01:31:50,356 ############################ 2024-11-13T01:31:50,357 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2024-11-13T01:31:50,358 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,359 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,359 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2024-11-13T01:31:50,360 to the `packages` configuration field. 2024-11-13T01:31:50,361 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,362 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,364 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,365 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,366 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2024-11-13T01:31:50,367 already explicitly excluding 'SigProfilerAssignment.data' via 2024-11-13T01:31:50,368 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,370 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,371 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,373 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,374 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,376 even if it does not contain any `.py` files. 2024-11-13T01:31:50,377 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,417 directory, all directories are treated like packages. 2024-11-13T01:31:50,418 ******************************************************************************** 2024-11-13T01:31:50,419 !! 2024-11-13T01:31:50,419 check.warn(importable) 2024-11-13T01:31:50,420 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2024-11-13T01:31:50,420 !! 2024-11-13T01:31:50,421 ******************************************************************************** 2024-11-13T01:31:50,422 ############################ 2024-11-13T01:31:50,422 # Package would be ignored # 2024-11-13T01:31:50,422 ############################ 2024-11-13T01:31:50,423 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2024-11-13T01:31:50,423 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,424 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,425 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2024-11-13T01:31:50,426 to the `packages` configuration field. 2024-11-13T01:31:50,427 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,429 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,430 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,434 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2024-11-13T01:31:50,435 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2024-11-13T01:31:50,436 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,438 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,440 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,443 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,515 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,516 even if it does not contain any `.py` files. 2024-11-13T01:31:50,516 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,517 directory, all directories are treated like packages. 2024-11-13T01:31:50,517 ******************************************************************************** 2024-11-13T01:31:50,518 !! 2024-11-13T01:31:50,519 check.warn(importable) 2024-11-13T01:31:50,519 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2024-11-13T01:31:50,520 !! 2024-11-13T01:31:50,521 ******************************************************************************** 2024-11-13T01:31:50,521 ############################ 2024-11-13T01:31:50,522 # Package would be ignored # 2024-11-13T01:31:50,522 ############################ 2024-11-13T01:31:50,523 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2024-11-13T01:31:50,523 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,524 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,524 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2024-11-13T01:31:50,525 to the `packages` configuration field. 2024-11-13T01:31:50,526 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,526 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,527 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,528 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,528 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,529 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2024-11-13T01:31:50,530 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2024-11-13T01:31:50,530 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,531 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,532 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,535 even if it does not contain any `.py` files. 2024-11-13T01:31:50,536 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,536 directory, all directories are treated like packages. 2024-11-13T01:31:50,537 ******************************************************************************** 2024-11-13T01:31:50,538 !! 2024-11-13T01:31:50,538 check.warn(importable) 2024-11-13T01:31:50,539 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2024-11-13T01:31:50,539 !! 2024-11-13T01:31:50,540 ******************************************************************************** 2024-11-13T01:31:50,541 ############################ 2024-11-13T01:31:50,542 # Package would be ignored # 2024-11-13T01:31:50,542 ############################ 2024-11-13T01:31:50,542 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2024-11-13T01:31:50,543 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,544 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,544 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2024-11-13T01:31:50,545 to the `packages` configuration field. 2024-11-13T01:31:50,546 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,547 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,548 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,549 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,550 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2024-11-13T01:31:50,551 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2024-11-13T01:31:50,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,552 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,553 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,556 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,556 even if it does not contain any `.py` files. 2024-11-13T01:31:50,557 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,557 directory, all directories are treated like packages. 2024-11-13T01:31:50,558 ******************************************************************************** 2024-11-13T01:31:50,559 !! 2024-11-13T01:31:50,559 check.warn(importable) 2024-11-13T01:31:50,559 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2024-11-13T01:31:50,560 !! 2024-11-13T01:31:50,561 ******************************************************************************** 2024-11-13T01:31:50,561 ############################ 2024-11-13T01:31:50,562 # Package would be ignored # 2024-11-13T01:31:50,562 ############################ 2024-11-13T01:31:50,563 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2024-11-13T01:31:50,563 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,564 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,565 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2024-11-13T01:31:50,566 to the `packages` configuration field. 2024-11-13T01:31:50,566 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,568 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,569 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,571 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2024-11-13T01:31:50,572 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2024-11-13T01:31:50,572 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,574 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,575 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,579 even if it does not contain any `.py` files. 2024-11-13T01:31:50,580 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,581 directory, all directories are treated like packages. 2024-11-13T01:31:50,581 ******************************************************************************** 2024-11-13T01:31:50,582 !! 2024-11-13T01:31:50,582 check.warn(importable) 2024-11-13T01:31:50,582 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2024-11-13T01:31:50,583 !! 2024-11-13T01:31:50,584 ******************************************************************************** 2024-11-13T01:31:50,584 ############################ 2024-11-13T01:31:50,585 # Package would be ignored # 2024-11-13T01:31:50,586 ############################ 2024-11-13T01:31:50,586 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2024-11-13T01:31:50,587 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,588 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,588 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2024-11-13T01:31:50,589 to the `packages` configuration field. 2024-11-13T01:31:50,590 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,591 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,591 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,592 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,593 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2024-11-13T01:31:50,594 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2024-11-13T01:31:50,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,595 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,596 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,597 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,600 even if it does not contain any `.py` files. 2024-11-13T01:31:50,600 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,601 directory, all directories are treated like packages. 2024-11-13T01:31:50,602 ******************************************************************************** 2024-11-13T01:31:50,603 !! 2024-11-13T01:31:50,603 check.warn(importable) 2024-11-13T01:31:50,604 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2024-11-13T01:31:50,604 !! 2024-11-13T01:31:50,606 ******************************************************************************** 2024-11-13T01:31:50,606 ############################ 2024-11-13T01:31:50,607 # Package would be ignored # 2024-11-13T01:31:50,607 ############################ 2024-11-13T01:31:50,608 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2024-11-13T01:31:50,609 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,610 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,610 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2024-11-13T01:31:50,611 to the `packages` configuration field. 2024-11-13T01:31:50,611 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,612 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,613 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,615 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2024-11-13T01:31:50,616 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2024-11-13T01:31:50,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,617 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,617 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,618 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,621 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,621 even if it does not contain any `.py` files. 2024-11-13T01:31:50,621 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,622 directory, all directories are treated like packages. 2024-11-13T01:31:50,622 ******************************************************************************** 2024-11-13T01:31:50,623 !! 2024-11-13T01:31:50,624 check.warn(importable) 2024-11-13T01:31:50,624 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2024-11-13T01:31:50,625 !! 2024-11-13T01:31:50,626 ******************************************************************************** 2024-11-13T01:31:50,626 ############################ 2024-11-13T01:31:50,627 # Package would be ignored # 2024-11-13T01:31:50,627 ############################ 2024-11-13T01:31:50,628 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2024-11-13T01:31:50,628 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,629 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,630 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2024-11-13T01:31:50,630 to the `packages` configuration field. 2024-11-13T01:31:50,631 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,632 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,633 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,635 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,636 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2024-11-13T01:31:50,637 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2024-11-13T01:31:50,637 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,638 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,639 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,642 even if it does not contain any `.py` files. 2024-11-13T01:31:50,643 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,644 directory, all directories are treated like packages. 2024-11-13T01:31:50,644 ******************************************************************************** 2024-11-13T01:31:50,645 !! 2024-11-13T01:31:50,646 check.warn(importable) 2024-11-13T01:31:50,646 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2024-11-13T01:31:50,647 !! 2024-11-13T01:31:50,647 ******************************************************************************** 2024-11-13T01:31:50,648 ############################ 2024-11-13T01:31:50,648 # Package would be ignored # 2024-11-13T01:31:50,649 ############################ 2024-11-13T01:31:50,649 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2024-11-13T01:31:50,650 but it is absent from setuptools' `packages` configuration. 2024-11-13T01:31:50,651 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-13T01:31:50,651 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2024-11-13T01:31:50,652 to the `packages` configuration field. 2024-11-13T01:31:50,653 Alternatively, you can also rely on setuptools' discovery methods 2024-11-13T01:31:50,653 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-13T01:31:50,654 instead of `find_packages(...)`/`find:`). 2024-11-13T01:31:50,655 You can read more about "package discovery" on setuptools documentation page: 2024-11-13T01:31:50,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-13T01:31:50,657 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2024-11-13T01:31:50,658 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2024-11-13T01:31:50,658 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-13T01:31:50,658 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-13T01:31:50,659 combination with a more fine grained `package-data` configuration. 2024-11-13T01:31:50,661 You can read more about "package data files" on setuptools documentation page: 2024-11-13T01:31:50,662 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-13T01:31:50,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-13T01:31:50,664 even if it does not contain any `.py` files. 2024-11-13T01:31:50,665 On the other hand, currently there is no concept of package data 2024-11-13T01:31:50,665 directory, all directories are treated like packages. 2024-11-13T01:31:50,666 ******************************************************************************** 2024-11-13T01:31:50,667 !! 2024-11-13T01:31:50,667 check.warn(importable) 2024-11-13T01:31:50,669 creating build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,669 copying SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,670 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,670 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,671 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,671 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,671 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,672 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,672 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,673 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,673 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:50,674 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:50,674 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:50,675 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:50,675 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-11-13T01:31:50,676 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-11-13T01:31:50,676 creating build/lib/SigProfilerAssignment/controllers 2024-11-13T01:31:50,677 copying SigProfilerAssignment/controllers/cli_controller.py -> build/lib/SigProfilerAssignment/controllers 2024-11-13T01:31:50,678 creating build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,678 copying SigProfilerAssignment/data/.DS_Store -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,679 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,679 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,680 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,680 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,681 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,681 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,682 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,683 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,683 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,684 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,684 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2024-11-13T01:31:50,685 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,686 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,686 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,687 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,688 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,688 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,688 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,689 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,689 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,690 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,690 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,691 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,691 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,692 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,692 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,693 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,693 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,694 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,694 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,695 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,695 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,696 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,696 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,697 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,698 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,698 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,699 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,699 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,700 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,700 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,701 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,702 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,702 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:50,702 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,703 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,703 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,704 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,705 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,705 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,706 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,706 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,707 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,709 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,712 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,715 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,720 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,725 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,728 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,731 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,735 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,740 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,743 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,746 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,758 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,764 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,766 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,769 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,772 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,777 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:50,790 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,791 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,795 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,798 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,802 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,805 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,808 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,811 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,816 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,821 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,825 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,828 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,832 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,838 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,841 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,845 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,852 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,859 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,863 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,867 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,875 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,882 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,885 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,889 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,897 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:50,905 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,907 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,912 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,917 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,922 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,927 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,931 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,935 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,942 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,947 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,950 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,953 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,957 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,962 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,965 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,968 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,972 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,978 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,981 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,983 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,989 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,995 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:50,998 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,001 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,006 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,011 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,012 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,016 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,019 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,022 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,026 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,029 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,032 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,037 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,041 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,044 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,047 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,052 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,058 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,061 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,064 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,068 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,074 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,077 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,080 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,085 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,091 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,094 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,097 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,102 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,106 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-11-13T01:31:51,108 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-11-13T01:31:51,118 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,119 copying SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,121 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,124 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,126 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,129 copying SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,131 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,134 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,136 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,138 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,140 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,143 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,144 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,147 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,152 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,156 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,163 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,194 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-13T01:31:51,195 !! 2024-11-13T01:31:51,196 ******************************************************************************** 2024-11-13T01:31:51,197 Please avoid running ``setup.py`` directly. 2024-11-13T01:31:51,197 Instead, use pypa/build, pypa/installer or other 2024-11-13T01:31:51,198 standards-based tools. 2024-11-13T01:31:51,199 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-13T01:31:51,199 ******************************************************************************** 2024-11-13T01:31:51,200 !! 2024-11-13T01:31:51,201 self.initialize_options() 2024-11-13T01:31:51,222 installing to build/bdist.linux-armv7l/wheel 2024-11-13T01:31:51,223 running install 2024-11-13T01:31:51,247 running install_lib 2024-11-13T01:31:51,273 creating build/bdist.linux-armv7l/wheel 2024-11-13T01:31:51,275 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-11-13T01:31:51,277 copying build/lib/SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,279 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,282 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,283 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,287 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/controllers 2024-11-13T01:31:51,289 copying build/lib/SigProfilerAssignment/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/controllers 2024-11-13T01:31:51,291 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,294 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-11-13T01:31:51,295 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,297 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,299 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,301 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,303 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2024-11-13T01:31:51,305 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,307 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,311 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,314 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,316 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,321 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,326 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,328 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,331 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,335 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,340 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,342 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,346 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,351 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,355 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,358 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,363 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,367 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,369 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,372 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,374 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,377 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,380 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,383 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,386 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2024-11-13T01:31:51,390 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,391 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,396 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,398 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,403 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,408 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,413 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,417 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,422 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,424 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,427 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,430 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,432 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,436 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,439 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,441 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,444 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,447 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,449 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,456 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,462 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,468 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,471 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,474 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,477 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,484 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-11-13T01:31:51,487 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,489 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,495 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,497 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,503 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,505 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,508 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,510 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,515 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,517 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,522 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,525 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,528 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,531 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,534 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,539 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,541 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,544 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,547 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,551 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,554 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,561 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,564 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,567 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,570 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,574 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,577 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,579 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,582 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,585 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,590 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,595 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,598 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-11-13T01:31:51,602 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,603 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,608 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,614 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,617 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,622 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,628 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,631 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,635 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,638 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,645 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,648 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,653 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,657 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,665 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,669 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,676 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,683 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,687 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,695 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,700 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,704 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,707 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,711 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,718 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2024-11-13T01:31:51,722 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,724 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,729 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,738 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,751 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,754 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,757 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,760 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,763 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,766 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,769 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,772 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,777 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,780 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,782 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,785 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,791 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,795 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,799 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,803 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,809 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,813 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,816 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,821 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2024-11-13T01:31:51,827 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,833 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,837 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,839 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,842 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,852 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,855 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2024-11-13T01:31:51,857 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,858 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,865 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,870 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,874 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,878 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2024-11-13T01:31:51,882 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-11-13T01:31:51,884 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/cnv_input 2024-11-13T01:31:51,896 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,897 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,900 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,903 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,905 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,907 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,910 copying build/lib/SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,912 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,915 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,917 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,919 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2024-11-13T01:31:51,922 copying build/lib/SigProfilerAssignment/data/.DS_Store -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,924 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2024-11-13T01:31:51,927 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,929 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,932 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,935 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,938 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,941 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,943 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,952 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,955 copying build/lib/SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,957 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,960 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2024-11-13T01:31:51,964 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:51,966 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:51,969 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-11-13T01:31:51,971 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-11-13T01:31:51,973 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-11-13T01:31:51,992 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,994 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2024-11-13T01:31:51,997 running install_egg_info 2024-11-13T01:31:52,031 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/./SigProfilerAssignment-0.1.9-py3.11.egg-info 2024-11-13T01:31:52,045 running install_scripts 2024-11-13T01:31:52,064 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.9.dist-info/WHEEL 2024-11-13T01:31:52,067 creating '/tmp/pip-wheel-8wr6raw4/SigProfilerAssignment-0.1.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-13T01:31:52,070 adding 'SigProfilerAssignment/Analyzer.py' 2024-11-13T01:31:52,071 adding 'SigProfilerAssignment/SigProfilerAssignment_CLI.py' 2024-11-13T01:31:52,073 adding 'SigProfilerAssignment/__init__.py' 2024-11-13T01:31:52,079 adding 'SigProfilerAssignment/decompose_subroutines.py' 2024-11-13T01:31:52,084 adding 'SigProfilerAssignment/decomposition.py' 2024-11-13T01:31:52,088 adding 'SigProfilerAssignment/single_sample.py' 2024-11-13T01:31:52,090 adding 'SigProfilerAssignment/version.py' 2024-11-13T01:31:52,092 adding 'SigProfilerAssignment/DecompositionPlots/.DS_Store' 2024-11-13T01:31:52,096 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2024-11-13T01:31:52,099 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2024-11-13T01:31:52,101 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2024-11-13T01:31:52,104 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2024-11-13T01:31:52,106 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2024-11-13T01:31:52,109 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2024-11-13T01:31:52,112 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2024-11-13T01:31:52,114 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py' 2024-11-13T01:31:52,130 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2024-11-13T01:31:52,135 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2024-11-13T01:31:52,136 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2024-11-13T01:31:52,244 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2024-11-13T01:31:52,251 adding 'SigProfilerAssignment/controllers/cli_controller.py' 2024-11-13T01:31:52,254 adding 'SigProfilerAssignment/data/.DS_Store' 2024-11-13T01:31:52,256 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2024-11-13T01:31:52,258 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2024-11-13T01:31:52,261 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2024-11-13T01:31:52,263 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2024-11-13T01:31:52,277 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2024-11-13T01:31:52,319 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2024-11-13T01:31:52,324 adding 'SigProfilerAssignment/data/Samples.txt' 2024-11-13T01:31:52,326 adding 'SigProfilerAssignment/data/csvexample.csv' 2024-11-13T01:31:52,329 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2024-11-13T01:31:52,333 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2024-11-13T01:31:52,347 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2024-11-13T01:31:52,352 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2024-11-13T01:31:52,361 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,370 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2024-11-13T01:31:52,383 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,387 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2024-11-13T01:31:52,390 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2024-11-13T01:31:52,396 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2024-11-13T01:31:52,430 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2024-11-13T01:31:52,465 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,470 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2024-11-13T01:31:52,473 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2024-11-13T01:31:52,480 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2024-11-13T01:31:52,501 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2024-11-13T01:31:52,539 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2024-11-13T01:31:52,577 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,582 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2024-11-13T01:31:52,585 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2024-11-13T01:31:52,589 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2024-11-13T01:31:52,595 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2024-11-13T01:31:52,633 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2024-11-13T01:31:52,672 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,676 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt' 2024-11-13T01:31:52,680 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt' 2024-11-13T01:31:52,686 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt' 2024-11-13T01:31:52,691 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt' 2024-11-13T01:31:52,712 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt' 2024-11-13T01:31:52,754 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,759 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2024-11-13T01:31:52,762 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2024-11-13T01:31:52,768 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2024-11-13T01:31:52,800 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2024-11-13T01:31:52,832 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2024-11-13T01:31:52,843 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2024-11-13T01:31:52,852 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2024-11-13T01:31:52,865 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2024-11-13T01:31:52,878 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2024-11-13T01:31:52,882 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2024-11-13T01:31:52,886 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2024-11-13T01:31:52,920 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2024-11-13T01:31:52,955 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2024-11-13T01:31:52,959 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2024-11-13T01:31:52,963 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2024-11-13T01:31:53,001 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2024-11-13T01:31:53,039 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2024-11-13T01:31:53,043 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2024-11-13T01:31:53,047 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2024-11-13T01:31:53,085 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2024-11-13T01:31:53,124 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2024-11-13T01:31:53,132 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt' 2024-11-13T01:31:53,139 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt' 2024-11-13T01:31:53,184 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt' 2024-11-13T01:31:53,227 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt' 2024-11-13T01:31:53,230 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt' 2024-11-13T01:31:53,233 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2024-11-13T01:31:53,237 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2024-11-13T01:31:53,268 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2024-11-13T01:31:53,300 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2024-11-13T01:31:53,310 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2024-11-13T01:31:53,318 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2024-11-13T01:31:53,330 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2024-11-13T01:31:53,343 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2024-11-13T01:31:53,346 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2024-11-13T01:31:53,350 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2024-11-13T01:31:53,383 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2024-11-13T01:31:53,418 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2024-11-13T01:31:53,422 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2024-11-13T01:31:53,425 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2024-11-13T01:31:53,462 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2024-11-13T01:31:53,500 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2024-11-13T01:31:53,504 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2024-11-13T01:31:53,507 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2024-11-13T01:31:53,545 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2024-11-13T01:31:53,583 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2024-11-13T01:31:53,590 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt' 2024-11-13T01:31:53,597 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt' 2024-11-13T01:31:53,641 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt' 2024-11-13T01:31:53,683 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt' 2024-11-13T01:31:53,687 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2024-11-13T01:31:53,690 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2024-11-13T01:31:53,722 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2024-11-13T01:31:53,754 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2024-11-13T01:31:53,763 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2024-11-13T01:31:53,772 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2024-11-13T01:31:53,784 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2024-11-13T01:31:53,796 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2024-11-13T01:31:53,800 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2024-11-13T01:31:53,803 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2024-11-13T01:31:53,837 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2024-11-13T01:31:53,871 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2024-11-13T01:31:53,875 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2024-11-13T01:31:53,878 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2024-11-13T01:31:53,915 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2024-11-13T01:31:53,953 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2024-11-13T01:31:53,957 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2024-11-13T01:31:53,960 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2024-11-13T01:31:53,998 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2024-11-13T01:31:54,036 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2024-11-13T01:31:54,043 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt' 2024-11-13T01:31:54,051 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt' 2024-11-13T01:31:54,095 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt' 2024-11-13T01:31:54,137 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt' 2024-11-13T01:31:54,141 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2024-11-13T01:31:54,145 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2024-11-13T01:31:54,176 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2024-11-13T01:31:54,208 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2024-11-13T01:31:54,218 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2024-11-13T01:31:54,226 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2024-11-13T01:31:54,238 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2024-11-13T01:31:54,251 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2024-11-13T01:31:54,254 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2024-11-13T01:31:54,257 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2024-11-13T01:31:54,291 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2024-11-13T01:31:54,325 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2024-11-13T01:31:54,329 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2024-11-13T01:31:54,332 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2024-11-13T01:31:54,369 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2024-11-13T01:31:54,407 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2024-11-13T01:31:54,411 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2024-11-13T01:31:54,414 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2024-11-13T01:31:54,451 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2024-11-13T01:31:54,489 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2024-11-13T01:31:54,497 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt' 2024-11-13T01:31:54,503 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt' 2024-11-13T01:31:54,547 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt' 2024-11-13T01:31:54,589 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt' 2024-11-13T01:31:54,593 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2024-11-13T01:31:54,596 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2024-11-13T01:31:54,628 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2024-11-13T01:31:54,660 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2024-11-13T01:31:54,725 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2024-11-13T01:31:54,729 adding 'SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt' 2024-11-13T01:31:54,731 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2024-11-13T01:31:54,732 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2024-11-13T01:31:54,734 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2024-11-13T01:31:54,736 adding 'SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt' 2024-11-13T01:31:54,738 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt' 2024-11-13T01:31:54,740 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2024-11-13T01:31:54,741 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2024-11-13T01:31:54,743 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2024-11-13T01:31:54,744 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt' 2024-11-13T01:31:54,751 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2024-11-13T01:31:54,770 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2024-11-13T01:31:54,789 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2024-11-13T01:31:54,822 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2024-11-13T01:31:54,842 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2024-11-13T01:31:54,845 adding 'SigProfilerAssignment-0.1.9.dist-info/LICENSE.txt' 2024-11-13T01:31:54,847 adding 'SigProfilerAssignment-0.1.9.dist-info/METADATA' 2024-11-13T01:31:54,848 adding 'SigProfilerAssignment-0.1.9.dist-info/WHEEL' 2024-11-13T01:31:54,850 adding 'SigProfilerAssignment-0.1.9.dist-info/entry_points.txt' 2024-11-13T01:31:54,851 adding 'SigProfilerAssignment-0.1.9.dist-info/top_level.txt' 2024-11-13T01:31:54,854 adding 'SigProfilerAssignment-0.1.9.dist-info/RECORD' 2024-11-13T01:31:54,929 removing build/bdist.linux-armv7l/wheel 2024-11-13T01:31:55,085 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2024-11-13T01:31:55,143 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.1.9-py3-none-any.whl size=5581153 sha256=24476823bdc1d9325df1c6bb5af6e4b20f60c34bac1c6525b3a0ba2a5f46abd8 2024-11-13T01:31:55,144 Stored in directory: /tmp/pip-ephem-wheel-cache-9a8dsm0a/wheels/41/b6/22/87c28b5907dea05c9e5ad836aabc66907ba7bff02c1926bf91 2024-11-13T01:31:55,162 Successfully built sigprofilerassignment 2024-11-13T01:31:55,298 Removed build tracker: '/tmp/pip-build-tracker-q7lxblxd'