2024-11-14T20:11:06,015 Created temporary directory: /tmp/pip-build-tracker-ah3ee_ic 2024-11-14T20:11:06,016 Initialized build tracking at /tmp/pip-build-tracker-ah3ee_ic 2024-11-14T20:11:06,017 Created build tracker: /tmp/pip-build-tracker-ah3ee_ic 2024-11-14T20:11:06,017 Entered build tracker: /tmp/pip-build-tracker-ah3ee_ic 2024-11-14T20:11:06,018 Created temporary directory: /tmp/pip-wheel-uczvcrob 2024-11-14T20:11:06,022 Created temporary directory: /tmp/pip-ephem-wheel-cache-1pmpk3vf 2024-11-14T20:11:06,067 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-14T20:11:06,069 2 location(s) to search for versions of starfish: 2024-11-14T20:11:06,069 * https://pypi.org/simple/starfish/ 2024-11-14T20:11:06,069 * https://www.piwheels.org/simple/starfish/ 2024-11-14T20:11:06,070 Fetching project page and analyzing links: https://pypi.org/simple/starfish/ 2024-11-14T20:11:06,071 Getting page https://pypi.org/simple/starfish/ 2024-11-14T20:11:06,073 Found index url https://pypi.org/simple/ 2024-11-14T20:11:06,291 Fetched page https://pypi.org/simple/starfish/ as application/vnd.pypi.simple.v1+json 2024-11-14T20:11:06,302 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/ca/cb/a87eaed3aadd4749c556b05f37a30a0b262793bf382d543fe18c84728daa/starfish-0.0.0a0-py3-none-any.whl (from https://pypi.org/simple/starfish/) 2024-11-14T20:11:06,302 Found link https://files.pythonhosted.org/packages/31/70/6a03a0c66bd29cd3dc7c45f9461454789c06b71d8724a49612317fc1b786/starfish-0.0.0a0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.0a0 2024-11-14T20:11:06,303 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/19/bd/49494f9d81b209b2e6c0596ea3012823dc2a617149ba1e26ff1a47649a81/starfish-0.0.0a1-py3-none-any.whl (from https://pypi.org/simple/starfish/) 2024-11-14T20:11:06,304 Found link https://files.pythonhosted.org/packages/d9/ef/51b0999ff891471226353b6bd9be16c01acdb8fef09f9674dce714639e1c/starfish-0.0.0a1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.0a1 2024-11-14T20:11:06,304 Found link https://files.pythonhosted.org/packages/31/cf/91118662326541c4b9f03fcc8be13827b0d68c47ff043560627de6709d22/starfish-0.0.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.2 2024-11-14T20:11:06,305 Found link https://files.pythonhosted.org/packages/ce/cd/a7f804272ac806409bd722be560bea46eb3a62534aa67b363c9beac4747c/starfish-0.0.3.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.3 2024-11-14T20:11:06,306 Found link https://files.pythonhosted.org/packages/ad/65/e1d95d420fc114563ed8baeccf173d7313ca5c3c2c905d53e9a152819481/starfish-0.0.4.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.4 2024-11-14T20:11:06,307 Found link https://files.pythonhosted.org/packages/35/38/1971faa6f669e34ef2d9af3911b85799bedde67545538e2380b696232a26/starfish-0.0.5.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.5 2024-11-14T20:11:06,308 Found link https://files.pythonhosted.org/packages/57/66/fff766bf2472c44be06a53ab1dd6a7e7fefa650b96a289ac23cac9b19f23/starfish-0.0.6.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.6 2024-11-14T20:11:06,308 Found link https://files.pythonhosted.org/packages/0d/21/507e1934196ed40c8321658637cb951510d9a0f542f56f787312130c8646/starfish-0.0.7.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.7 2024-11-14T20:11:06,309 Found link https://files.pythonhosted.org/packages/54/54/69c896987823b6b791a2eba8d2365e1818fcb5ad5f26cf23f8caab251927/starfish-0.0.8.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.8 2024-11-14T20:11:06,310 Found link https://files.pythonhosted.org/packages/5e/13/d045fc66b17e4e9fb979e245e454bec6a5c0be1ad732f4ae1dbe78dfdbf6/starfish-0.0.9.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.9 2024-11-14T20:11:06,311 Found link https://files.pythonhosted.org/packages/9d/c0/5cc35177ea5bb7080c4a037c00ffe6042f5e6eaa1f955b9d585c99e246a6/starfish-0.0.10.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.10 2024-11-14T20:11:06,311 Found link https://files.pythonhosted.org/packages/d5/bf/05f8011dcea7751c3925123eef251b243213a733b359fb3e62eea896b8ed/starfish-0.0.11.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.11 2024-11-14T20:11:06,313 Found link https://files.pythonhosted.org/packages/f9/d4/3a7b082325a86c7f0e62f0437aecd48699e1a0b12615ea8568fa6f480af5/starfish-0.0.12.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.12 2024-11-14T20:11:06,313 Found link https://files.pythonhosted.org/packages/98/b2/e84c9dbcccc64de43bd2dcd4a9c3607e70614c9b4def028423cb9471649c/starfish-0.0.14.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.14 2024-11-14T20:11:06,314 Found link https://files.pythonhosted.org/packages/f4/55/8289cdb579668dab27dc960d5a002c54c6beb257e6a8890f533f80070b32/starfish-0.0.15.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.15 2024-11-14T20:11:06,315 Found link https://files.pythonhosted.org/packages/05/08/35e7bed39030aaf871cb933457749a0c641189ed933cd915552eebe0ab40/starfish-0.0.16.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.16 2024-11-14T20:11:06,315 Found link https://files.pythonhosted.org/packages/90/71/e2b1fd618596c4a326e72203ed52f8d7ce0b0bb373e152f6ad3052621f19/starfish-0.0.17.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.17 2024-11-14T20:11:06,316 Found link https://files.pythonhosted.org/packages/09/39/a96216d4b90b2728365503d9fe4b4f9dfec34679b162f6b13b1f7c007a9d/starfish-0.0.18.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.18 2024-11-14T20:11:06,316 Found link https://files.pythonhosted.org/packages/a7/64/0561019d53b8e75c8169f1ff9d2bf77f86a21eeae3be7e43f2858b449fa1/starfish-0.0.19.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.19 2024-11-14T20:11:06,317 Found link https://files.pythonhosted.org/packages/93/0f/b41f6d4269fccdbda7990ba460ba3a07d042b4d77a3ed0f647be7a3cdfd6/starfish-0.0.20.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.20 2024-11-14T20:11:06,318 Found link https://files.pythonhosted.org/packages/ff/41/b2044e30be97456cbdaba80bf6399141a8f964594264893b21b0082039ab/starfish-0.0.21.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.21 2024-11-14T20:11:06,319 Found link https://files.pythonhosted.org/packages/79/c0/5f26d8e2cd4d7f1179e45a903092a4011951c59668229731353aeb1f20e6/starfish-0.0.22.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.22 2024-11-14T20:11:06,319 Found link https://files.pythonhosted.org/packages/47/ac/9b9123ed4525a16a898acc3deabc78ec14794bbc5275d0a136b11164455c/starfish-0.0.23.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.23 2024-11-14T20:11:06,320 Found link https://files.pythonhosted.org/packages/07/e6/92ce138e938b7971c441c5ca1e1936f3ba32ca739ddf7e19ffed6497b612/starfish-0.0.24.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.24 2024-11-14T20:11:06,321 Found link https://files.pythonhosted.org/packages/6b/0f/392da7855e1e133cdb3394fc3261550e93933c7ebdb78044b2fa9c759f07/starfish-0.0.25.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.25 2024-11-14T20:11:06,322 Found link https://files.pythonhosted.org/packages/e7/b6/9c8705a84994a7d91067d8a535c5d0a93254868ee2066a2ef1c2dcd0f2b8/starfish-0.0.26.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.26 2024-11-14T20:11:06,322 Found link https://files.pythonhosted.org/packages/dd/e9/f1e261eb6f5f8c81407d04d969a45d869c91fab6095f57b0bf8b5ea0f513/starfish-0.0.27.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.27 2024-11-14T20:11:06,323 Found link https://files.pythonhosted.org/packages/09/8d/6572ebc910ca56d134e896c9f0340d88669360b9712cd62fee7fe259b457/starfish-0.0.28.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.28 2024-11-14T20:11:06,324 Found link https://files.pythonhosted.org/packages/09/9d/b8d45abbbf92f28d9a63fcd5da8e622b19523ed43542dd5d62d266481add/starfish-0.0.30.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.30 2024-11-14T20:11:06,324 Found link https://files.pythonhosted.org/packages/7f/84/b1a6a919e181fc38b767c0e7a7961845b2b514d7585e2800665d182daae0/starfish-0.0.32.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.32 2024-11-14T20:11:06,325 Found link https://files.pythonhosted.org/packages/68/a7/8cac11c11305a43c95f9a76710c3f76a9354729cbc648c9cef02714f9cff/starfish-0.0.33.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.33 2024-11-14T20:11:06,326 Found link https://files.pythonhosted.org/packages/29/37/c92cf43801c20099b17eb0c7578d2bcdbf8cd3d0e811ca62614f6eb990f4/starfish-0.0.34.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.34 2024-11-14T20:11:06,326 Found link https://files.pythonhosted.org/packages/59/04/4312e1a9f79c12b59be63599494e158f050121ecf96c372cea5246cca4ae/starfish-0.0.35.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.35 2024-11-14T20:11:06,327 Found link https://files.pythonhosted.org/packages/18/6d/b19751970a223242fe77389a4af41775d43f5f9361be3909661ec185d733/starfish-0.0.36.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.36 2024-11-14T20:11:06,328 Found link https://files.pythonhosted.org/packages/15/09/c02ba3942c673a052bdce8680e28a84799bf03b2cbf2ba92baf511417118/starfish-0.1.0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.0 2024-11-14T20:11:06,328 Found link https://files.pythonhosted.org/packages/9a/c3/f43d9e538dbad2b03845a6158356740c0534f7c311a98a1fdb752949f501/starfish-0.1.1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.1 2024-11-14T20:11:06,329 Found link https://files.pythonhosted.org/packages/09/55/a22d0a20987938cd39b3095f573665eb1b385c449475d941d89b40466fdb/starfish-0.1.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.2 2024-11-14T20:11:06,329 Found link https://files.pythonhosted.org/packages/16/58/766eedc12f26200e5f12a2d63a4222d49c82ae729d8c98d2f0cbd6909db2/starfish-0.1.3.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.3 2024-11-14T20:11:06,330 Found link https://files.pythonhosted.org/packages/a9/60/7a30d30b8d5f99046ecd85e89a371188eba4a6a05688fdcaf1babd6cab3f/starfish-0.1.4.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.4 2024-11-14T20:11:06,331 Found link https://files.pythonhosted.org/packages/e6/a1/845173304e51ae574aa6ca75b2a7c8bfe9d644957a91860b732df0127abe/starfish-0.1.5.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.5 2024-11-14T20:11:06,332 Found link https://files.pythonhosted.org/packages/3f/0f/31dab0c67a30f16be496a44335532a3d4021ef3728a4ac1f7a6237812523/starfish-0.1.6.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.6 2024-11-14T20:11:06,332 Found link https://files.pythonhosted.org/packages/b9/f7/3854f84f4087487c2e862285ad17a5bf4ef230c5d0234c8ca8462a056210/starfish-0.1.7.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.7 2024-11-14T20:11:06,333 Found link https://files.pythonhosted.org/packages/14/66/0ca64718ba29483c84166aa1af364ae66dac28447a24c6f302d0e964838c/starfish-0.1.8.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.8 2024-11-14T20:11:06,334 Found link https://files.pythonhosted.org/packages/56/9a/2de4f8a28a639433a1131f20246d1f04a6111356de7341388824ad8b61dc/starfish-0.1.9.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.9 2024-11-14T20:11:06,335 Found link https://files.pythonhosted.org/packages/be/9b/4215abcd20509c27b2885c6736e4640581d00b36e6e3ac178a53138c8f2e/starfish-0.1.10.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.10 2024-11-14T20:11:06,335 Found link https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.0 2024-11-14T20:11:06,336 Found link https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.1 2024-11-14T20:11:06,337 Found link https://files.pythonhosted.org/packages/22/47/757222c68a59be787b43a472f2174633247705308b328a01487bb8a66dbd/starfish-0.2.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.2 2024-11-14T20:11:06,338 Found link https://files.pythonhosted.org/packages/16/b8/7a8240c6d52bf613bdab14a1768bd11a7d2c608927609800e041a690ab16/starfish-0.3.0.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.12,>=3.9), version: 0.3.0 2024-11-14T20:11:06,340 Found link https://files.pythonhosted.org/packages/9b/27/ee25c489b3cc51b4a60b404286169f099a483de844c83f78a33e6596dbf9/starfish-0.3.1.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9), version: 0.3.1 2024-11-14T20:11:06,341 Fetching project page and analyzing links: https://www.piwheels.org/simple/starfish/ 2024-11-14T20:11:06,341 Getting page https://www.piwheels.org/simple/starfish/ 2024-11-14T20:11:06,342 Found index url https://www.piwheels.org/simple/ 2024-11-14T20:11:06,519 Fetched page https://www.piwheels.org/simple/starfish/ as text/html 2024-11-14T20:11:06,532 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.3.0-py3-none-any.whl#sha256=1ac4dc92bda40d503e8baad71786a0775446e90c082c9cfc77e7d53fa31244a0 (from https://www.piwheels.org/simple/starfish/) (requires-python:>=3.9, <3.12) 2024-11-14T20:11:06,533 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.2.2-py3-none-any.whl#sha256=06fad46018f315fe97054842425c3278fd3b873d429cadbc961fcea46ec4e76c (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,534 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.2.1-py3-none-any.whl#sha256=23a1b9f858903e905ef3004e2dda996e56fb9fcd90ae24f877011a8313667aeb (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,534 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.2.0-py3-none-any.whl#sha256=ca06862a964eb8cd388b04579fade6fd2d3b4023ad920d3b805757741255c429 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,535 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.10-py3-none-any.whl#sha256=cc3c2d33d8d781cf3486fb70f77759355c1563c9afb757e267b1cabec29ca5f9 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,536 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.9-py3-none-any.whl#sha256=f221ebc443cd83d7214259cba2a256d0a839ecef476f966b66bef9f88e92edb7 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,536 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.8-py3-none-any.whl#sha256=8b28e06631ffa63dd4afb490b3488799e4673af3883946374de90db7d7ceb41b (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,537 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.7-py3-none-any.whl#sha256=8bd156d5f9d8959735d69e9126e0a99f83be0004756a335c41d506ae082eebf7 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,538 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.6-py3-none-any.whl#sha256=4f38007bc4f3f93326c51162f90caca55a8a4b3027133173f351bd1233c956c8 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,538 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.5-py3-none-any.whl#sha256=0ae97d57b5639ff0c414fb5463592d1b45eddd988d56f4cbe4e65ea916ea437d (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,539 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.4-py3-none-any.whl#sha256=a10c404acfd4a1d92502d8404b36e3377801b6faeb87ed1f749eb92d78e090c8 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,539 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.3-py3-none-any.whl#sha256=8ef1c74376080b280375c218946863877c7cb49b32f08e54b77038c5c2d5f67f (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,540 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.2-py3-none-any.whl#sha256=4b8c2d9e535f399f9e613b156a924f07bcb3f5d4d081173348c956b7afa14127 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,541 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.1-py3-none-any.whl#sha256=cbfb8ec354e15861ed2432a6c7751357871c1e01e41f6d1e5c0318f0600eb7bc (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,541 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.1.0-py3-none-any.whl#sha256=b50ee3d4d55b762fe4bd50428bf150f92ed42d2bc1b16ccfc99abfbbd0ebcac1 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,541 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.36-py3-none-any.whl#sha256=dfdcf6870899b2631c3b5c8490fc7be4c3a202b221e0d72c4fc7cb160fd19359 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,542 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.35-py3-none-any.whl#sha256=5399fc56af1b551a3a060c8a3cd2b51b42b260da6d3b9e1998df02d102c993d0 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,542 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.34-py3-none-any.whl#sha256=cbb7042e81064960d37ad4b50402f41f5c7a793e0d713aff7f3c965a7634e91a (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,543 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.33-py3-none-any.whl#sha256=5a865aaa2eed84cb582865eb8a28078676d6c925706e32a93f9e774ed071db1d (from 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https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,548 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.23-py3-none-any.whl#sha256=cf65db28813dd81de014375ea223d56980d8e6b25f7e32b1ae38812673de1f6f (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,548 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.22-py3-none-any.whl#sha256=ef5325a9236436467fd27228012736db90c6f2b407453e2287dc6a10933d7ef0 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,549 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.21-py3-none-any.whl#sha256=b1baba90c379afca9d165f1272c8f0fd0529caa69a8cec15493b362531532a31 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,550 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.20-py3-none-any.whl#sha256=539242d1dd135fe73bca64372cece968cd9bf2804bc0e2ba4a3cd813a0d6dc3d (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,550 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.19-py3-none-any.whl#sha256=32c5357e74bccd4bb732826773671d05aed00456c378574994bbf05cbcde4d07 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,551 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.18-py3-none-any.whl#sha256=de60bcd7b0807032a26d9b34c7fea1490ab6a668608c45f9d76dafff69335682 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,551 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.17-py3-none-any.whl#sha256=ff08b2b9fdf5e3d8c0209390882a995471041bfe9fadb2c09a64b2389b24e77f (from 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https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,556 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.8-py3-none-any.whl#sha256=5d7d0a2aac44827620e3ed7734c9f56653fcfb3f979dd6b5bd2ddabf00e56078 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,557 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.7-py3-none-any.whl#sha256=93a250e86c60fe1e4dd5a69867c21f792999ccdf94517145c196ddc52e1b9a71 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,558 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.6-py3-none-any.whl#sha256=e00dc8af43f12702ff1fdbf97d2b3b092763d225fedf932098b48ca3cb4065c6 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,558 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.5-py3-none-any.whl#sha256=9e05d69a521ee78fe5f7382d4deab26b073e1b4c813bbc630d3b0a27341bda00 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,559 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.4-py3-none-any.whl#sha256=91f0650812bf26150aa86797dd48a02f227f8a33596cf55b8ac3f84cd81f02da (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,559 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.3-py3-none-any.whl#sha256=3d802475d3e0c1d46ebb6880aa39d11c141dd135abdbb392ed09272d144f2cc1 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,560 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.2-py3-none-any.whl#sha256=cef89ea54614ccea71a531a804b8be0a93a0e9a7fa8a551657aac5122dfa2309 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,560 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.0a1-py3-none-any.whl#sha256=bd3e716eb37bfc003b63c953dc8c56de9a5af57a3100483645abfdb2fd6094c2 (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,560 Skipping link: No binaries permitted for starfish: https://www.piwheels.org/simple/starfish/starfish-0.0.0a0-py3-none-any.whl#sha256=4b01ef557ca9f870cf8a70eedc8735d845bf6db1dda1d8e5ec179a8b49f8b08f (from https://www.piwheels.org/simple/starfish/) 2024-11-14T20:11:06,561 Skipping link: not a file: https://www.piwheels.org/simple/starfish/ 2024-11-14T20:11:06,562 Skipping link: not a file: https://pypi.org/simple/starfish/ 2024-11-14T20:11:06,586 Given no hashes to check 1 links for project 'starfish': discarding no candidates 2024-11-14T20:11:06,589 Collecting starfish==0.3.1 2024-11-14T20:11:06,591 Created temporary directory: /tmp/pip-unpack-yoc4vlr8 2024-11-14T20:11:06,840 Downloading starfish-0.3.1.tar.gz (275 kB) 2024-11-14T20:11:07,572 Added starfish==0.3.1 from https://files.pythonhosted.org/packages/9b/27/ee25c489b3cc51b4a60b404286169f099a483de844c83f78a33e6596dbf9/starfish-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-ah3ee_ic' 2024-11-14T20:11:07,574 Running setup.py (path:/tmp/pip-wheel-uczvcrob/starfish_0c789e34a983406a96488b6945e255c0/setup.py) egg_info for package starfish 2024-11-14T20:11:07,575 Created temporary directory: /tmp/pip-pip-egg-info-c9rwpw0d 2024-11-14T20:11:07,576 Preparing metadata (setup.py): started 2024-11-14T20:11:07,577 Running command python setup.py egg_info 2024-11-14T20:11:08,806 running egg_info 2024-11-14T20:11:08,834 creating /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info 2024-11-14T20:11:08,835 writing /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/PKG-INFO 2024-11-14T20:11:08,840 writing dependency_links to /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/dependency_links.txt 2024-11-14T20:11:08,841 writing entry points to /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/entry_points.txt 2024-11-14T20:11:08,844 writing requirements to /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/requires.txt 2024-11-14T20:11:08,845 writing top-level names to /tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/top_level.txt 2024-11-14T20:11:08,847 writing manifest file '/tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/SOURCES.txt' 2024-11-14T20:11:08,975 reading manifest file '/tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/SOURCES.txt' 2024-11-14T20:11:08,977 reading manifest template 'MANIFEST.in' 2024-11-14T20:11:08,998 adding license file 'LICENSE' 2024-11-14T20:11:09,012 writing manifest file '/tmp/pip-pip-egg-info-c9rwpw0d/starfish.egg-info/SOURCES.txt' 2024-11-14T20:11:09,130 Preparing metadata (setup.py): finished with status 'done' 2024-11-14T20:11:09,136 Source in /tmp/pip-wheel-uczvcrob/starfish_0c789e34a983406a96488b6945e255c0 has version 0.3.1, which satisfies requirement starfish==0.3.1 from https://files.pythonhosted.org/packages/9b/27/ee25c489b3cc51b4a60b404286169f099a483de844c83f78a33e6596dbf9/starfish-0.3.1.tar.gz 2024-11-14T20:11:09,137 Removed starfish==0.3.1 from https://files.pythonhosted.org/packages/9b/27/ee25c489b3cc51b4a60b404286169f099a483de844c83f78a33e6596dbf9/starfish-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-ah3ee_ic' 2024-11-14T20:11:09,146 Created temporary directory: /tmp/pip-unpack-vrn_ev47 2024-11-14T20:11:09,147 Created temporary directory: /tmp/pip-unpack-anfe_ttx 2024-11-14T20:11:09,147 Building wheels for collected packages: starfish 2024-11-14T20:11:09,151 Created temporary directory: /tmp/pip-wheel-ckeh21yh 2024-11-14T20:11:09,151 Building wheel for starfish (setup.py): started 2024-11-14T20:11:09,153 Destination directory: /tmp/pip-wheel-ckeh21yh 2024-11-14T20:11:09,153 Running command python setup.py bdist_wheel 2024-11-14T20:11:10,488 running bdist_wheel 2024-11-14T20:11:10,573 running build 2024-11-14T20:11:10,574 running build_py 2024-11-14T20:11:10,580 creating build/lib/starfish 2024-11-14T20:11:10,582 copying starfish/test.py -> build/lib/starfish 2024-11-14T20:11:10,584 copying starfish/morphology.py -> build/lib/starfish 2024-11-14T20:11:10,586 copying starfish/image.py -> build/lib/starfish 2024-11-14T20:11:10,587 copying starfish/config.py -> build/lib/starfish 2024-11-14T20:11:10,589 copying starfish/__main__.py -> build/lib/starfish 2024-11-14T20:11:10,591 copying starfish/types.py -> build/lib/starfish 2024-11-14T20:11:10,592 copying starfish/spots.py -> build/lib/starfish 2024-11-14T20:11:10,595 copying starfish/data.py -> build/lib/starfish 2024-11-14T20:11:10,597 copying starfish/__init__.py -> build/lib/starfish 2024-11-14T20:11:10,599 creating build/lib/starfish/test 2024-11-14T20:11:10,600 copying starfish/test/__init__.py -> build/lib/starfish/test 2024-11-14T20:11:10,602 creating build/lib/starfish/experiment 2024-11-14T20:11:10,603 copying starfish/experiment/builder.py -> build/lib/starfish/experiment 2024-11-14T20:11:10,605 copying starfish/experiment/__init__.py -> build/lib/starfish/experiment 2024-11-14T20:11:10,607 creating build/lib/starfish/util 2024-11-14T20:11:10,608 copying starfish/util/__init__.py -> build/lib/starfish/util 2024-11-14T20:11:10,610 copying starfish/util/plot.py -> build/lib/starfish/util 2024-11-14T20:11:10,613 creating build/lib/starfish/core 2024-11-14T20:11:10,614 copying starfish/core/compat.py -> build/lib/starfish/core 2024-11-14T20:11:10,617 copying starfish/core/errors.py -> build/lib/starfish/core 2024-11-14T20:11:10,620 copying starfish/core/_display.py -> build/lib/starfish/core 2024-11-14T20:11:10,622 copying starfish/core/_version.py -> build/lib/starfish/core 2024-11-14T20:11:10,624 copying starfish/core/__init__.py -> build/lib/starfish/core 2024-11-14T20:11:10,626 copying starfish/core/starfish.py -> build/lib/starfish/core 2024-11-14T20:11:10,629 creating build/lib/starfish/test/full_pipelines 2024-11-14T20:11:10,630 copying starfish/test/full_pipelines/__init__.py -> build/lib/starfish/test/full_pipelines 2024-11-14T20:11:10,633 creating build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,634 copying starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,636 copying starfish/test/full_pipelines/api/test_iss_api.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,639 copying starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,640 copying starfish/test/full_pipelines/api/test_merfish.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,643 copying starfish/test/full_pipelines/api/__init__.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,645 copying starfish/test/full_pipelines/api/test_dartfish.py -> build/lib/starfish/test/full_pipelines/api 2024-11-14T20:11:10,647 creating build/lib/starfish/core/morphology 2024-11-14T20:11:10,648 copying starfish/core/morphology/util.py -> build/lib/starfish/core/morphology 2024-11-14T20:11:10,650 copying starfish/core/morphology/__init__.py -> build/lib/starfish/core/morphology 2024-11-14T20:11:10,652 creating build/lib/starfish/core/image 2024-11-14T20:11:10,653 copying starfish/core/image/__init__.py -> build/lib/starfish/core/image 2024-11-14T20:11:10,655 creating build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,656 copying starfish/core/intensity_table/concatenate.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,658 copying starfish/core/intensity_table/intensity_table_coordinates.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,660 copying starfish/core/intensity_table/overlap.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,662 copying starfish/core/intensity_table/intensity_table.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,664 copying starfish/core/intensity_table/__init__.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,666 copying starfish/core/intensity_table/decoded_intensity_table.py -> build/lib/starfish/core/intensity_table 2024-11-14T20:11:10,668 creating build/lib/starfish/core/test 2024-11-14T20:11:10,670 copying starfish/core/test/test_multiprocessing_workflow.py -> build/lib/starfish/core/test 2024-11-14T20:11:10,672 copying starfish/core/test/test_display.py -> build/lib/starfish/core/test 2024-11-14T20:11:10,674 copying starfish/core/test/test_synthetic_spot_creation.py -> build/lib/starfish/core/test 2024-11-14T20:11:10,675 copying starfish/core/test/factories.py -> build/lib/starfish/core/test 2024-11-14T20:11:10,680 copying starfish/core/test/__init__.py -> build/lib/starfish/core/test 2024-11-14T20:11:10,682 creating build/lib/starfish/core/config 2024-11-14T20:11:10,683 copying starfish/core/config/__init__.py -> build/lib/starfish/core/config 2024-11-14T20:11:10,686 creating build/lib/starfish/core/segmentation_mask 2024-11-14T20:11:10,688 copying starfish/core/segmentation_mask/segmentation_mask.py -> build/lib/starfish/core/segmentation_mask 2024-11-14T20:11:10,693 copying starfish/core/segmentation_mask/__init__.py -> build/lib/starfish/core/segmentation_mask 2024-11-14T20:11:10,700 creating build/lib/starfish/core/experiment 2024-11-14T20:11:10,703 copying starfish/core/experiment/experiment.py -> build/lib/starfish/core/experiment 2024-11-14T20:11:10,710 copying starfish/core/experiment/version.py -> build/lib/starfish/core/experiment 2024-11-14T20:11:10,713 copying starfish/core/experiment/__init__.py -> build/lib/starfish/core/experiment 2024-11-14T20:11:10,717 creating build/lib/starfish/core/expression_matrix 2024-11-14T20:11:10,718 copying starfish/core/expression_matrix/concatenate.py -> build/lib/starfish/core/expression_matrix 2024-11-14T20:11:10,720 copying starfish/core/expression_matrix/expression_matrix.py -> build/lib/starfish/core/expression_matrix 2024-11-14T20:11:10,722 copying starfish/core/expression_matrix/__init__.py -> build/lib/starfish/core/expression_matrix 2024-11-14T20:11:10,724 creating build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,726 copying starfish/core/spacetx_format/test_fov_manifest.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,728 copying starfish/core/spacetx_format/test_fuzz.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,729 copying starfish/core/spacetx_format/cli.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,731 copying starfish/core/spacetx_format/validate_sptx.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,733 copying starfish/core/spacetx_format/test_field_of_view.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,735 copying starfish/core/spacetx_format/test_experiment.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,737 copying starfish/core/spacetx_format/test_codebook.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,739 copying starfish/core/spacetx_format/util.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,741 copying starfish/core/spacetx_format/__init__.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,742 copying starfish/core/spacetx_format/test_coordinates.py -> build/lib/starfish/core/spacetx_format 2024-11-14T20:11:10,744 creating build/lib/starfish/core/util 2024-11-14T20:11:10,745 copying starfish/core/util/logging.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,747 copying starfish/core/util/levels.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,750 copying starfish/core/util/clock.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,751 copying starfish/core/util/config.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,753 copying starfish/core/util/try_import.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,755 copying starfish/core/util/argparse.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,756 copying starfish/core/util/enum.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,758 copying starfish/core/util/exec.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,760 copying starfish/core/util/__init__.py -> build/lib/starfish/core/util 2024-11-14T20:11:10,762 creating build/lib/starfish/core/spots 2024-11-14T20:11:10,763 copying starfish/core/spots/__init__.py -> build/lib/starfish/core/spots 2024-11-14T20:11:10,765 creating build/lib/starfish/core/codebook 2024-11-14T20:11:10,767 copying starfish/core/codebook/_format.py -> build/lib/starfish/core/codebook 2024-11-14T20:11:10,768 copying starfish/core/codebook/codebook.py -> build/lib/starfish/core/codebook 2024-11-14T20:11:10,771 copying starfish/core/codebook/__init__.py -> build/lib/starfish/core/codebook 2024-11-14T20:11:10,773 creating build/lib/starfish/core/types 2024-11-14T20:11:10,774 copying starfish/core/types/_spot_finding_results.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,777 copying starfish/core/types/_decoded_spots.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,779 copying starfish/core/types/_constants.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,781 copying starfish/core/types/_spot_attributes.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,782 copying starfish/core/types/_functionsource.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,784 copying starfish/core/types/_validated_table.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,786 copying starfish/core/types/__init__.py -> build/lib/starfish/core/types 2024-11-14T20:11:10,788 creating build/lib/starfish/core/imagestack 2024-11-14T20:11:10,790 copying starfish/core/imagestack/indexing_utils.py -> build/lib/starfish/core/imagestack 2024-11-14T20:11:10,792 copying starfish/core/imagestack/imagestack.py -> build/lib/starfish/core/imagestack 2024-11-14T20:11:10,796 copying starfish/core/imagestack/physical_coordinates.py -> build/lib/starfish/core/imagestack 2024-11-14T20:11:10,798 copying starfish/core/imagestack/__init__.py -> build/lib/starfish/core/imagestack 2024-11-14T20:11:10,800 copying starfish/core/imagestack/dataorder.py -> build/lib/starfish/core/imagestack 2024-11-14T20:11:10,802 creating build/lib/starfish/core/pipeline 2024-11-14T20:11:10,803 copying starfish/core/pipeline/algorithmbase.py -> build/lib/starfish/core/pipeline 2024-11-14T20:11:10,805 copying starfish/core/pipeline/__init__.py -> build/lib/starfish/core/pipeline 2024-11-14T20:11:10,808 creating build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,809 copying starfish/core/morphology/Filter/structural_label.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,811 copying starfish/core/morphology/Filter/reduce.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,813 copying starfish/core/morphology/Filter/map.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,815 copying starfish/core/morphology/Filter/_base.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,816 copying starfish/core/morphology/Filter/__init__.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,818 copying starfish/core/morphology/Filter/areafilter.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,820 copying starfish/core/morphology/Filter/min_distance_label.py -> build/lib/starfish/core/morphology/Filter 2024-11-14T20:11:10,822 creating build/lib/starfish/core/morphology/label_image 2024-11-14T20:11:10,824 copying starfish/core/morphology/label_image/__init__.py -> build/lib/starfish/core/morphology/label_image 2024-11-14T20:11:10,825 copying starfish/core/morphology/label_image/label_image.py -> build/lib/starfish/core/morphology/label_image 2024-11-14T20:11:10,828 creating build/lib/starfish/core/morphology/Segment 2024-11-14T20:11:10,829 copying starfish/core/morphology/Segment/watershed.py -> build/lib/starfish/core/morphology/Segment 2024-11-14T20:11:10,831 copying starfish/core/morphology/Segment/_base.py -> build/lib/starfish/core/morphology/Segment 2024-11-14T20:11:10,833 copying starfish/core/morphology/Segment/__init__.py -> build/lib/starfish/core/morphology/Segment 2024-11-14T20:11:10,835 creating build/lib/starfish/core/morphology/Merge 2024-11-14T20:11:10,836 copying starfish/core/morphology/Merge/_base.py -> build/lib/starfish/core/morphology/Merge 2024-11-14T20:11:10,838 copying starfish/core/morphology/Merge/simple.py -> build/lib/starfish/core/morphology/Merge 2024-11-14T20:11:10,840 copying starfish/core/morphology/Merge/__init__.py -> build/lib/starfish/core/morphology/Merge 2024-11-14T20:11:10,843 creating build/lib/starfish/core/morphology/Binarize 2024-11-14T20:11:10,844 copying starfish/core/morphology/Binarize/threshold.py -> build/lib/starfish/core/morphology/Binarize 2024-11-14T20:11:10,846 copying starfish/core/morphology/Binarize/_base.py -> build/lib/starfish/core/morphology/Binarize 2024-11-14T20:11:10,847 copying starfish/core/morphology/Binarize/__init__.py -> build/lib/starfish/core/morphology/Binarize 2024-11-14T20:11:10,850 creating build/lib/starfish/core/morphology/binary_mask 2024-11-14T20:11:10,851 copying starfish/core/morphology/binary_mask/_io.py -> build/lib/starfish/core/morphology/binary_mask 2024-11-14T20:11:10,854 copying starfish/core/morphology/binary_mask/binary_mask.py -> build/lib/starfish/core/morphology/binary_mask 2024-11-14T20:11:10,856 copying starfish/core/morphology/binary_mask/expand.py -> build/lib/starfish/core/morphology/binary_mask 2024-11-14T20:11:10,858 copying starfish/core/morphology/binary_mask/__init__.py -> build/lib/starfish/core/morphology/binary_mask 2024-11-14T20:11:10,860 creating build/lib/starfish/core/morphology/Filter/test 2024-11-14T20:11:10,861 copying starfish/core/morphology/Filter/test/test_map.py -> build/lib/starfish/core/morphology/Filter/test 2024-11-14T20:11:10,863 copying starfish/core/morphology/Filter/test/test_areafilter.py -> build/lib/starfish/core/morphology/Filter/test 2024-11-14T20:11:10,865 copying starfish/core/morphology/Filter/test/test_reduce.py -> build/lib/starfish/core/morphology/Filter/test 2024-11-14T20:11:10,867 copying starfish/core/morphology/Filter/test/__init__.py -> build/lib/starfish/core/morphology/Filter/test 2024-11-14T20:11:10,869 creating build/lib/starfish/core/morphology/label_image/test 2024-11-14T20:11:10,870 copying starfish/core/morphology/label_image/test/test_label_image.py -> build/lib/starfish/core/morphology/label_image/test 2024-11-14T20:11:10,872 copying starfish/core/morphology/label_image/test/__init__.py -> build/lib/starfish/core/morphology/label_image/test 2024-11-14T20:11:10,875 creating build/lib/starfish/core/morphology/Merge/test 2024-11-14T20:11:10,876 copying starfish/core/morphology/Merge/test/test_simple.py -> build/lib/starfish/core/morphology/Merge/test 2024-11-14T20:11:10,878 copying starfish/core/morphology/Merge/test/__init__.py -> build/lib/starfish/core/morphology/Merge/test 2024-11-14T20:11:10,880 creating build/lib/starfish/core/morphology/Binarize/test 2024-11-14T20:11:10,881 copying starfish/core/morphology/Binarize/test/__init__.py -> build/lib/starfish/core/morphology/Binarize/test 2024-11-14T20:11:10,883 copying starfish/core/morphology/Binarize/test/test_threshold.py -> build/lib/starfish/core/morphology/Binarize/test 2024-11-14T20:11:10,885 creating build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,886 copying starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,888 copying starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,891 copying starfish/core/morphology/binary_mask/test/test_expand.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,892 copying starfish/core/morphology/binary_mask/test/factories.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,894 copying starfish/core/morphology/binary_mask/test/__init__.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,896 copying starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:10,899 creating build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,900 copying starfish/core/image/Filter/call_bases.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,903 copying starfish/core/image/Filter/clip_percentile_to_zero.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,905 copying starfish/core/image/Filter/laplace.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,907 copying starfish/core/image/Filter/gaussian_low_pass.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,909 copying starfish/core/image/Filter/white_tophat.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,912 copying starfish/core/image/Filter/reduce.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,914 copying starfish/core/image/Filter/clip_value_to_zero.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,916 copying starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,919 copying starfish/core/image/Filter/match_histograms.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,920 copying starfish/core/image/Filter/bandpass.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,923 copying starfish/core/image/Filter/mean_high_pass.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,925 copying starfish/core/image/Filter/gaussian_high_pass.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,927 copying starfish/core/image/Filter/linear_unmixing.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,929 copying starfish/core/image/Filter/map.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,932 copying starfish/core/image/Filter/_base.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,933 copying starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,935 copying starfish/core/image/Filter/util.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,937 copying starfish/core/image/Filter/element_wise_mult.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,939 copying starfish/core/image/Filter/__init__.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,941 copying starfish/core/image/Filter/clip.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,943 copying starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/lib/starfish/core/image/Filter 2024-11-14T20:11:10,946 creating build/lib/starfish/core/image/_registration 2024-11-14T20:11:10,947 copying starfish/core/image/_registration/_format.py -> build/lib/starfish/core/image/_registration 2024-11-14T20:11:10,949 copying starfish/core/image/_registration/__init__.py -> build/lib/starfish/core/image/_registration 2024-11-14T20:11:10,951 copying starfish/core/image/_registration/transforms_list.py -> build/lib/starfish/core/image/_registration 2024-11-14T20:11:10,953 creating build/lib/starfish/core/image/Segment 2024-11-14T20:11:10,954 copying starfish/core/image/Segment/watershed.py -> build/lib/starfish/core/image/Segment 2024-11-14T20:11:10,957 copying starfish/core/image/Segment/_base.py -> build/lib/starfish/core/image/Segment 2024-11-14T20:11:10,959 copying starfish/core/image/Segment/__init__.py -> build/lib/starfish/core/image/Segment 2024-11-14T20:11:10,961 creating build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,962 copying starfish/core/image/Filter/test/test_filter.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,964 copying starfish/core/image/Filter/test/test_map.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,966 copying starfish/core/image/Filter/test/test_api_contract.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,968 copying starfish/core/image/Filter/test/test_histogram_matching.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,970 copying starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,971 copying starfish/core/image/Filter/test/test_reduce.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,974 copying starfish/core/image/Filter/test/test_call_bases.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,976 copying starfish/core/image/Filter/test/test_linear_unmixing.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,978 copying starfish/core/image/Filter/test/__init__.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,980 copying starfish/core/image/Filter/test/test_white_tophat.py -> build/lib/starfish/core/image/Filter/test 2024-11-14T20:11:10,983 creating build/lib/starfish/core/image/_registration/test 2024-11-14T20:11:10,984 copying starfish/core/image/_registration/test/test_transforms_list.py -> build/lib/starfish/core/image/_registration/test 2024-11-14T20:11:10,986 copying starfish/core/image/_registration/test/__init__.py -> build/lib/starfish/core/image/_registration/test 2024-11-14T20:11:10,988 creating build/lib/starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:10,989 copying starfish/core/image/_registration/ApplyTransform/_base.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:10,992 copying starfish/core/image/_registration/ApplyTransform/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:10,994 copying starfish/core/image/_registration/ApplyTransform/warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:10,999 creating build/lib/starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:11,002 copying starfish/core/image/_registration/LearnTransform/_base.py -> build/lib/starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:11,007 copying starfish/core/image/_registration/LearnTransform/translation.py -> build/lib/starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:11,013 copying starfish/core/image/_registration/LearnTransform/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:11,028 creating build/lib/starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:11,033 copying starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:11,042 copying starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:11,050 creating build/lib/starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:11,054 copying starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:11,063 copying starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:11,071 creating build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,074 copying starfish/core/intensity_table/test/test_from_imagestack.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,076 copying starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,077 copying starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,079 copying starfish/core/intensity_table/test/test_concatenate.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,081 copying starfish/core/intensity_table/test/test_from_spot_data.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,083 copying starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,085 copying starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,087 copying starfish/core/intensity_table/test/test_overlap.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,089 copying starfish/core/intensity_table/test/factories.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,091 copying starfish/core/intensity_table/test/__init__.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,093 copying starfish/core/intensity_table/test/test_to_mermaid.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,095 copying starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/lib/starfish/core/intensity_table/test 2024-11-14T20:11:11,097 creating build/lib/starfish/core/config/test 2024-11-14T20:11:11,098 copying starfish/core/config/test/test_config.py -> build/lib/starfish/core/config/test 2024-11-14T20:11:11,100 copying starfish/core/config/test/__init__.py -> build/lib/starfish/core/config/test 2024-11-14T20:11:11,102 creating build/lib/starfish/core/experiment/test 2024-11-14T20:11:11,104 copying starfish/core/experiment/test/test_version.py -> build/lib/starfish/core/experiment/test 2024-11-14T20:11:11,105 copying starfish/core/experiment/test/test_experiment.py -> build/lib/starfish/core/experiment/test 2024-11-14T20:11:11,108 copying starfish/core/experiment/test/__init__.py -> build/lib/starfish/core/experiment/test 2024-11-14T20:11:11,110 creating build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,111 copying starfish/core/experiment/builder/structured_formatter.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,114 copying starfish/core/experiment/builder/orderediterator.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,115 copying starfish/core/experiment/builder/providers.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,117 copying starfish/core/experiment/builder/defaultproviders.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,119 copying starfish/core/experiment/builder/builder.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,122 copying starfish/core/experiment/builder/__init__.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,123 copying starfish/core/experiment/builder/inplace.py -> build/lib/starfish/core/experiment/builder 2024-11-14T20:11:11,126 creating build/lib/starfish/core/experiment/builder/test 2024-11-14T20:11:11,127 copying starfish/core/experiment/builder/test/test_orderediterator.py -> build/lib/starfish/core/experiment/builder/test 2024-11-14T20:11:11,129 copying starfish/core/experiment/builder/test/test_inplace.py -> build/lib/starfish/core/experiment/builder/test 2024-11-14T20:11:11,131 copying starfish/core/experiment/builder/test/test_small_axis.py -> build/lib/starfish/core/experiment/builder/test 2024-11-14T20:11:11,133 copying starfish/core/experiment/builder/test/__init__.py -> build/lib/starfish/core/experiment/builder/test 2024-11-14T20:11:11,135 creating build/lib/starfish/core/experiment/builder/test/factories 2024-11-14T20:11:11,136 copying starfish/core/experiment/builder/test/factories/all_purpose.py -> build/lib/starfish/core/experiment/builder/test/factories 2024-11-14T20:11:11,138 copying starfish/core/experiment/builder/test/factories/__init__.py -> build/lib/starfish/core/experiment/builder/test/factories 2024-11-14T20:11:11,140 copying starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/lib/starfish/core/experiment/builder/test/factories 2024-11-14T20:11:11,143 creating build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,144 copying starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,146 copying starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,149 copying starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,151 copying starfish/core/experiment/builder/test/structured_formatter/util.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,154 copying starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:11,156 creating build/lib/starfish/core/expression_matrix/test 2024-11-14T20:11:11,157 copying starfish/core/expression_matrix/test/test_concatenate.py -> build/lib/starfish/core/expression_matrix/test 2024-11-14T20:11:11,159 copying starfish/core/expression_matrix/test/test_serialization.py -> build/lib/starfish/core/expression_matrix/test 2024-11-14T20:11:11,161 copying starfish/core/expression_matrix/test/__init__.py -> build/lib/starfish/core/expression_matrix/test 2024-11-14T20:11:11,163 creating build/lib/starfish/core/util/test 2024-11-14T20:11:11,164 copying starfish/core/util/test/test_levels.py -> build/lib/starfish/core/util/test 2024-11-14T20:11:11,167 copying starfish/core/util/test/__init__.py -> build/lib/starfish/core/util/test 2024-11-14T20:11:11,169 copying starfish/core/util/test/test_preserve_float_range.py -> build/lib/starfish/core/util/test 2024-11-14T20:11:11,172 creating build/lib/starfish/core/util/click 2024-11-14T20:11:11,173 copying starfish/core/util/click/__init__.py -> build/lib/starfish/core/util/click 2024-11-14T20:11:11,176 creating build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,177 copying starfish/core/spots/DecodeSpots/check_all_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,180 copying starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,182 copying starfish/core/spots/DecodeSpots/metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,184 copying starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,186 copying starfish/core/spots/DecodeSpots/_base.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,188 copying starfish/core/spots/DecodeSpots/trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,191 copying starfish/core/spots/DecodeSpots/check_all_funcs.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,194 copying starfish/core/spots/DecodeSpots/util.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,197 copying starfish/core/spots/DecodeSpots/__init__.py -> build/lib/starfish/core/spots/DecodeSpots 2024-11-14T20:11:11,199 creating build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,201 copying starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,203 copying starfish/core/spots/FindSpots/blob.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,205 copying starfish/core/spots/FindSpots/_base.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,207 copying starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,211 copying starfish/core/spots/FindSpots/spot_finding_utils.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,215 copying starfish/core/spots/FindSpots/__init__.py -> build/lib/starfish/core/spots/FindSpots 2024-11-14T20:11:11,219 creating build/lib/starfish/core/spots/AssignTargets 2024-11-14T20:11:11,222 copying starfish/core/spots/AssignTargets/_base.py -> build/lib/starfish/core/spots/AssignTargets 2024-11-14T20:11:11,226 copying starfish/core/spots/AssignTargets/__init__.py -> build/lib/starfish/core/spots/AssignTargets 2024-11-14T20:11:11,231 copying starfish/core/spots/AssignTargets/label.py -> build/lib/starfish/core/spots/AssignTargets 2024-11-14T20:11:11,237 creating build/lib/starfish/core/spots/DetectPixels 2024-11-14T20:11:11,240 copying starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/lib/starfish/core/spots/DetectPixels 2024-11-14T20:11:11,247 copying starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/lib/starfish/core/spots/DetectPixels 2024-11-14T20:11:11,251 copying starfish/core/spots/DetectPixels/_base.py -> build/lib/starfish/core/spots/DetectPixels 2024-11-14T20:11:11,253 copying starfish/core/spots/DetectPixels/__init__.py -> build/lib/starfish/core/spots/DetectPixels 2024-11-14T20:11:11,255 creating build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,257 copying starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,260 copying starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,262 copying starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,264 copying starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,266 copying starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,268 copying starfish/core/spots/DecodeSpots/test/__init__.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,270 copying starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,272 copying starfish/core/spots/DecodeSpots/test/test_check_all.py -> build/lib/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:11,275 creating build/lib/starfish/core/spots/FindSpots/test 2024-11-14T20:11:11,276 copying starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/lib/starfish/core/spots/FindSpots/test 2024-11-14T20:11:11,279 copying starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/lib/starfish/core/spots/FindSpots/test 2024-11-14T20:11:11,281 copying starfish/core/spots/FindSpots/test/__init__.py -> build/lib/starfish/core/spots/FindSpots/test 2024-11-14T20:11:11,283 copying starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots/test 2024-11-14T20:11:11,286 creating build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,287 copying starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,289 copying starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,291 copying starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,293 copying starfish/core/spots/DetectPixels/test/__init__.py -> build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,295 copying starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/lib/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:11,297 creating build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,298 copying starfish/core/codebook/test/test_metric_decode.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,300 copying starfish/core/codebook/test/test_to_json.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,302 copying starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,304 copying starfish/core/codebook/test/test_normalize_code_traces.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,307 copying starfish/core/codebook/test/test_code_length.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,308 copying starfish/core/codebook/test/test_from_code_array.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,311 copying starfish/core/codebook/test/test_per_round_max_decode.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,313 copying starfish/core/codebook/test/test_approximate_nearest_code.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,315 copying starfish/core/codebook/test/factories.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,318 copying starfish/core/codebook/test/__init__.py -> build/lib/starfish/core/codebook/test 2024-11-14T20:11:11,320 creating build/lib/starfish/core/types/test 2024-11-14T20:11:11,321 copying starfish/core/types/test/test_saving_spots.py -> build/lib/starfish/core/types/test 2024-11-14T20:11:11,323 copying starfish/core/types/test/test_decoded_spots.py -> build/lib/starfish/core/types/test 2024-11-14T20:11:11,325 copying starfish/core/types/test/__init__.py -> build/lib/starfish/core/types/test 2024-11-14T20:11:11,328 creating build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,329 copying starfish/core/imagestack/test/test_from_numpy_array.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,331 copying starfish/core/imagestack/test/test_cropped_load.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,334 copying starfish/core/imagestack/test/test_slice_ops.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,336 copying starfish/core/imagestack/test/test_index.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,339 copying starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,341 copying starfish/core/imagestack/test/imagestack_test_utils.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,343 copying starfish/core/imagestack/test/test_export.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,345 copying starfish/core/imagestack/test/test_apply.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,347 copying starfish/core/imagestack/test/test_labeled_indices.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,350 copying starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,352 copying starfish/core/imagestack/test/test_metadata.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,354 copying starfish/core/imagestack/test/__init__.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,355 copying starfish/core/imagestack/test/test_coordinates.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,358 copying starfish/core/imagestack/test/test_from_tilefetcher.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,360 copying starfish/core/imagestack/test/test_max_proj.py -> build/lib/starfish/core/imagestack/test 2024-11-14T20:11:11,362 creating build/lib/starfish/core/imagestack/parser 2024-11-14T20:11:11,363 copying starfish/core/imagestack/parser/crop.py -> build/lib/starfish/core/imagestack/parser 2024-11-14T20:11:11,366 copying starfish/core/imagestack/parser/_tiledata.py -> build/lib/starfish/core/imagestack/parser 2024-11-14T20:11:11,368 copying starfish/core/imagestack/parser/_key.py -> build/lib/starfish/core/imagestack/parser 2024-11-14T20:11:11,369 copying starfish/core/imagestack/parser/__init__.py -> build/lib/starfish/core/imagestack/parser 2024-11-14T20:11:11,372 creating build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,373 copying starfish/core/imagestack/test/factories/with_coords.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,375 copying starfish/core/imagestack/test/factories/all_purpose.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,378 copying starfish/core/imagestack/test/factories/from_codebook.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,379 copying starfish/core/imagestack/test/factories/synthetic_stack.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,381 copying starfish/core/imagestack/test/factories/__init__.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,383 copying starfish/core/imagestack/test/factories/unique_tiles.py -> build/lib/starfish/core/imagestack/test/factories 2024-11-14T20:11:11,385 creating build/lib/starfish/core/imagestack/parser/numpy 2024-11-14T20:11:11,387 copying starfish/core/imagestack/parser/numpy/__init__.py -> build/lib/starfish/core/imagestack/parser/numpy 2024-11-14T20:11:11,390 creating build/lib/starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:11,392 copying starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:11,395 copying starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:11,399 creating build/lib/starfish/core/imagestack/parser/tileset 2024-11-14T20:11:11,401 copying starfish/core/imagestack/parser/tileset/_parser.py -> build/lib/starfish/core/imagestack/parser/tileset 2024-11-14T20:11:11,406 copying starfish/core/imagestack/parser/tileset/__init__.py -> build/lib/starfish/core/imagestack/parser/tileset 2024-11-14T20:11:11,409 running egg_info 2024-11-14T20:11:11,437 writing starfish.egg-info/PKG-INFO 2024-11-14T20:11:11,440 writing dependency_links to starfish.egg-info/dependency_links.txt 2024-11-14T20:11:11,442 writing entry points to starfish.egg-info/entry_points.txt 2024-11-14T20:11:11,444 writing requirements to starfish.egg-info/requires.txt 2024-11-14T20:11:11,446 writing top-level names to starfish.egg-info/top_level.txt 2024-11-14T20:11:11,568 reading manifest file 'starfish.egg-info/SOURCES.txt' 2024-11-14T20:11:11,590 reading manifest template 'MANIFEST.in' 2024-11-14T20:11:11,607 adding license file 'LICENSE' 2024-11-14T20:11:11,624 writing manifest file 'starfish.egg-info/SOURCES.txt' 2024-11-14T20:11:11,636 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'starfish.spacetx_format.examples.codebook' is absent from the `packages` configuration. 2024-11-14T20:11:11,637 !! 2024-11-14T20:11:11,638 ******************************************************************************** 2024-11-14T20:11:11,639 ############################ 2024-11-14T20:11:11,639 # Package would be ignored # 2024-11-14T20:11:11,640 ############################ 2024-11-14T20:11:11,640 Python recognizes 'starfish.spacetx_format.examples.codebook' as an importable package[^1], 2024-11-14T20:11:11,640 but it is absent from setuptools' `packages` configuration. 2024-11-14T20:11:11,642 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-14T20:11:11,642 package, please make sure that 'starfish.spacetx_format.examples.codebook' is explicitly added 2024-11-14T20:11:11,643 to the `packages` configuration field. 2024-11-14T20:11:11,643 Alternatively, you can also rely on setuptools' discovery methods 2024-11-14T20:11:11,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-14T20:11:11,644 instead of `find_packages(...)`/`find:`). 2024-11-14T20:11:11,645 You can read more about "package discovery" on setuptools documentation page: 2024-11-14T20:11:11,646 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-14T20:11:11,647 If you don't want 'starfish.spacetx_format.examples.codebook' to be distributed and are 2024-11-14T20:11:11,648 already explicitly excluding 'starfish.spacetx_format.examples.codebook' via 2024-11-14T20:11:11,648 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-14T20:11:11,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-14T20:11:11,649 combination with a more fine grained `package-data` configuration. 2024-11-14T20:11:11,650 You can read more about "package data files" on setuptools documentation page: 2024-11-14T20:11:11,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-14T20:11:11,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-14T20:11:11,653 even if it does not contain any `.py` files. 2024-11-14T20:11:11,654 On the other hand, currently there is no concept of package data 2024-11-14T20:11:11,655 directory, all directories are treated like packages. 2024-11-14T20:11:11,655 ******************************************************************************** 2024-11-14T20:11:11,656 !! 2024-11-14T20:11:11,657 check.warn(importable) 2024-11-14T20:11:11,658 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'starfish.spacetx_format.examples.experiment' is absent from the `packages` configuration. 2024-11-14T20:11:11,658 !! 2024-11-14T20:11:11,659 ******************************************************************************** 2024-11-14T20:11:11,660 ############################ 2024-11-14T20:11:11,660 # Package would be ignored # 2024-11-14T20:11:11,661 ############################ 2024-11-14T20:11:11,662 Python recognizes 'starfish.spacetx_format.examples.experiment' as an importable package[^1], 2024-11-14T20:11:11,662 but it is absent from setuptools' `packages` configuration. 2024-11-14T20:11:11,663 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-14T20:11:11,664 package, please make sure that 'starfish.spacetx_format.examples.experiment' is explicitly added 2024-11-14T20:11:11,664 to the `packages` configuration field. 2024-11-14T20:11:11,666 Alternatively, you can also rely on setuptools' discovery methods 2024-11-14T20:11:11,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-14T20:11:11,667 instead of `find_packages(...)`/`find:`). 2024-11-14T20:11:11,668 You can read more about "package discovery" on setuptools documentation page: 2024-11-14T20:11:11,669 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-14T20:11:11,670 If you don't want 'starfish.spacetx_format.examples.experiment' to be distributed and are 2024-11-14T20:11:11,671 already explicitly excluding 'starfish.spacetx_format.examples.experiment' via 2024-11-14T20:11:11,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-14T20:11:11,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-14T20:11:11,672 combination with a more fine grained `package-data` configuration. 2024-11-14T20:11:11,673 You can read more about "package data files" on setuptools documentation page: 2024-11-14T20:11:11,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-14T20:11:11,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-14T20:11:11,676 even if it does not contain any `.py` files. 2024-11-14T20:11:11,676 On the other hand, currently there is no concept of package data 2024-11-14T20:11:11,677 directory, all directories are treated like packages. 2024-11-14T20:11:11,677 ******************************************************************************** 2024-11-14T20:11:11,678 !! 2024-11-14T20:11:11,679 check.warn(importable) 2024-11-14T20:11:11,679 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'starfish.spacetx_format.examples.field_of_view' is absent from the `packages` configuration. 2024-11-14T20:11:11,680 !! 2024-11-14T20:11:11,681 ******************************************************************************** 2024-11-14T20:11:11,681 ############################ 2024-11-14T20:11:11,682 # Package would be ignored # 2024-11-14T20:11:11,683 ############################ 2024-11-14T20:11:11,683 Python recognizes 'starfish.spacetx_format.examples.field_of_view' as an importable package[^1], 2024-11-14T20:11:11,684 but it is absent from setuptools' `packages` configuration. 2024-11-14T20:11:11,685 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-14T20:11:11,685 package, please make sure that 'starfish.spacetx_format.examples.field_of_view' is explicitly added 2024-11-14T20:11:11,686 to the `packages` configuration field. 2024-11-14T20:11:11,687 Alternatively, you can also rely on setuptools' discovery methods 2024-11-14T20:11:11,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-14T20:11:11,688 instead of `find_packages(...)`/`find:`). 2024-11-14T20:11:11,689 You can read more about "package discovery" on setuptools documentation page: 2024-11-14T20:11:11,690 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-14T20:11:11,691 If you don't want 'starfish.spacetx_format.examples.field_of_view' to be distributed and are 2024-11-14T20:11:11,692 already explicitly excluding 'starfish.spacetx_format.examples.field_of_view' via 2024-11-14T20:11:11,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-14T20:11:11,693 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-14T20:11:11,693 combination with a more fine grained `package-data` configuration. 2024-11-14T20:11:11,695 You can read more about "package data files" on setuptools documentation page: 2024-11-14T20:11:11,696 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-14T20:11:11,697 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-14T20:11:11,698 even if it does not contain any `.py` files. 2024-11-14T20:11:11,699 On the other hand, currently there is no concept of package data 2024-11-14T20:11:11,699 directory, all directories are treated like packages. 2024-11-14T20:11:11,699 ******************************************************************************** 2024-11-14T20:11:11,700 !! 2024-11-14T20:11:11,701 check.warn(importable) 2024-11-14T20:11:11,701 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'starfish.spacetx_format.examples.fov_manifest' is absent from the `packages` configuration. 2024-11-14T20:11:11,702 !! 2024-11-14T20:11:11,702 ******************************************************************************** 2024-11-14T20:11:11,703 ############################ 2024-11-14T20:11:11,703 # Package would be ignored # 2024-11-14T20:11:11,704 ############################ 2024-11-14T20:11:11,704 Python recognizes 'starfish.spacetx_format.examples.fov_manifest' as an importable package[^1], 2024-11-14T20:11:11,704 but it is absent from setuptools' `packages` configuration. 2024-11-14T20:11:11,705 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-14T20:11:11,706 package, please make sure that 'starfish.spacetx_format.examples.fov_manifest' is explicitly added 2024-11-14T20:11:11,706 to the `packages` configuration field. 2024-11-14T20:11:11,707 Alternatively, you can also rely on setuptools' discovery methods 2024-11-14T20:11:11,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-14T20:11:11,708 instead of `find_packages(...)`/`find:`). 2024-11-14T20:11:11,709 You can read more about "package discovery" on setuptools documentation page: 2024-11-14T20:11:11,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-14T20:11:11,711 If you don't want 'starfish.spacetx_format.examples.fov_manifest' to be distributed and are 2024-11-14T20:11:11,711 already explicitly excluding 'starfish.spacetx_format.examples.fov_manifest' via 2024-11-14T20:11:11,712 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-14T20:11:11,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-14T20:11:11,713 combination with a more fine grained `package-data` configuration. 2024-11-14T20:11:11,714 You can read more about "package data files" on setuptools documentation page: 2024-11-14T20:11:11,715 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-14T20:11:11,717 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-14T20:11:11,717 even if it does not contain any `.py` files. 2024-11-14T20:11:11,718 On the other hand, currently there is no concept of package data 2024-11-14T20:11:11,719 directory, all directories are treated like packages. 2024-11-14T20:11:11,719 ******************************************************************************** 2024-11-14T20:11:11,720 !! 2024-11-14T20:11:11,721 check.warn(importable) 2024-11-14T20:11:11,721 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'starfish.spacetx_format.schema' is absent from the `packages` configuration. 2024-11-14T20:11:11,722 !! 2024-11-14T20:11:11,723 ******************************************************************************** 2024-11-14T20:11:11,724 ############################ 2024-11-14T20:11:11,724 # Package would be ignored # 2024-11-14T20:11:11,725 ############################ 2024-11-14T20:11:11,726 Python recognizes 'starfish.spacetx_format.schema' as an importable package[^1], 2024-11-14T20:11:11,726 but it is absent from setuptools' `packages` configuration. 2024-11-14T20:11:11,727 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-14T20:11:11,728 package, please make sure that 'starfish.spacetx_format.schema' is explicitly added 2024-11-14T20:11:11,728 to the `packages` configuration field. 2024-11-14T20:11:11,729 Alternatively, you can also rely on setuptools' discovery methods 2024-11-14T20:11:11,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-14T20:11:11,730 instead of `find_packages(...)`/`find:`). 2024-11-14T20:11:11,731 You can read more about "package discovery" on setuptools documentation page: 2024-11-14T20:11:11,732 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-14T20:11:11,733 If you don't want 'starfish.spacetx_format.schema' to be distributed and are 2024-11-14T20:11:11,733 already explicitly excluding 'starfish.spacetx_format.schema' via 2024-11-14T20:11:11,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-14T20:11:11,734 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-14T20:11:11,735 combination with a more fine grained `package-data` configuration. 2024-11-14T20:11:11,735 You can read more about "package data files" on setuptools documentation page: 2024-11-14T20:11:11,736 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-14T20:11:11,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-14T20:11:11,738 even if it does not contain any `.py` files. 2024-11-14T20:11:11,739 On the other hand, currently there is no concept of package data 2024-11-14T20:11:11,739 directory, all directories are treated like packages. 2024-11-14T20:11:11,740 ******************************************************************************** 2024-11-14T20:11:11,741 !! 2024-11-14T20:11:11,741 check.warn(importable) 2024-11-14T20:11:11,742 copying starfish/REQUIREMENTS-STRICT.txt -> build/lib/starfish 2024-11-14T20:11:11,742 creating build/lib/starfish/spacetx_format/examples/codebook 2024-11-14T20:11:11,743 copying starfish/spacetx_format/examples/codebook/codebook.json -> build/lib/starfish/spacetx_format/examples/codebook 2024-11-14T20:11:11,743 copying starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/lib/starfish/spacetx_format/examples/codebook 2024-11-14T20:11:11,744 copying starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/lib/starfish/spacetx_format/examples/codebook 2024-11-14T20:11:11,744 creating build/lib/starfish/spacetx_format/examples/experiment 2024-11-14T20:11:11,745 copying starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2024-11-14T20:11:11,745 copying starfish/spacetx_format/examples/experiment/experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2024-11-14T20:11:11,746 copying starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/lib/starfish/spacetx_format/examples/experiment 2024-11-14T20:11:11,746 creating build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,747 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,747 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,748 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,748 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,749 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,750 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,750 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,751 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,751 copying starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,751 copying starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,752 copying starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,752 copying starfish/spacetx_format/examples/field_of_view/too_large.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,753 creating build/lib/starfish/spacetx_format/examples/fov_manifest 2024-11-14T20:11:11,753 copying starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/lib/starfish/spacetx_format/examples/fov_manifest 2024-11-14T20:11:11,754 creating build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,754 copying starfish/spacetx_format/schema/experiment_4.0.0.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,755 copying starfish/spacetx_format/schema/experiment_5.0.0.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,755 copying starfish/spacetx_format/schema/extras.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,756 copying starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,757 copying starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,759 copying starfish/spacetx_format/schema/version.json -> build/lib/starfish/spacetx_format/schema 2024-11-14T20:11:11,762 creating build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:11,763 copying starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:11,765 copying starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:11,767 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2024-11-14T20:11:11,768 copying starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2024-11-14T20:11:11,771 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:11,772 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:11,774 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:11,777 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:11,779 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2024-11-14T20:11:11,780 copying starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2024-11-14T20:11:11,783 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:11,784 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:11,786 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:11,788 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:11,818 UPDATING build/lib/starfish/core/_version.py 2024-11-14T20:11:11,819 set build/lib/starfish/core/_version.py to '0.3.1' 2024-11-14T20:11:11,848 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-14T20:11:11,849 !! 2024-11-14T20:11:11,851 ******************************************************************************** 2024-11-14T20:11:11,852 Please avoid running ``setup.py`` directly. 2024-11-14T20:11:11,853 Instead, use pypa/build, pypa/installer or other 2024-11-14T20:11:11,855 standards-based tools. 2024-11-14T20:11:11,858 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-14T20:11:11,860 ******************************************************************************** 2024-11-14T20:11:11,864 !! 2024-11-14T20:11:11,865 self.initialize_options() 2024-11-14T20:11:11,887 installing to build/bdist.linux-armv7l/wheel 2024-11-14T20:11:11,888 running install 2024-11-14T20:11:11,913 running install_lib 2024-11-14T20:11:11,940 creating build/bdist.linux-armv7l/wheel 2024-11-14T20:11:11,942 creating build/bdist.linux-armv7l/wheel/starfish 2024-11-14T20:11:11,944 copying build/lib/starfish/REQUIREMENTS-STRICT.txt -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:11,946 copying build/lib/starfish/test.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:11,948 creating build/bdist.linux-armv7l/wheel/starfish/test 2024-11-14T20:11:11,950 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2024-11-14T20:11:11,951 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2024-11-14T20:11:11,953 copying build/lib/starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,955 copying build/lib/starfish/test/full_pipelines/api/test_iss_api.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,957 copying build/lib/starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,959 copying build/lib/starfish/test/full_pipelines/api/test_merfish.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,962 copying build/lib/starfish/test/full_pipelines/api/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,964 copying build/lib/starfish/test/full_pipelines/api/test_dartfish.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2024-11-14T20:11:11,966 copying build/lib/starfish/test/full_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines 2024-11-14T20:11:11,968 copying build/lib/starfish/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test 2024-11-14T20:11:11,970 copying build/lib/starfish/morphology.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:11,972 creating build/bdist.linux-armv7l/wheel/starfish/experiment 2024-11-14T20:11:11,973 copying build/lib/starfish/experiment/builder.py -> build/bdist.linux-armv7l/wheel/./starfish/experiment 2024-11-14T20:11:11,976 copying build/lib/starfish/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/experiment 2024-11-14T20:11:11,978 copying build/lib/starfish/image.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:11,980 copying build/lib/starfish/config.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:11,983 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format 2024-11-14T20:11:11,986 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples 2024-11-14T20:11:11,988 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,990 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,992 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,994 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:11,997 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,002 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,006 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,009 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,010 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,012 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,014 copying build/lib/starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,016 copying build/lib/starfish/spacetx_format/examples/field_of_view/too_large.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,017 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2024-11-14T20:11:12,020 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2024-11-14T20:11:12,021 copying build/lib/starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2024-11-14T20:11:12,023 copying build/lib/starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2024-11-14T20:11:12,024 copying build/lib/starfish/spacetx_format/examples/experiment/experiment.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2024-11-14T20:11:12,027 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2024-11-14T20:11:12,028 copying build/lib/starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/fov_manifest 2024-11-14T20:11:12,030 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2024-11-14T20:11:12,032 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2024-11-14T20:11:12,033 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2024-11-14T20:11:12,035 copying build/lib/starfish/spacetx_format/examples/codebook/codebook.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2024-11-14T20:11:12,038 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2024-11-14T20:11:12,039 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,040 copying build/lib/starfish/spacetx_format/schema/version.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,042 copying build/lib/starfish/spacetx_format/schema/extras.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,044 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2024-11-14T20:11:12,046 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:12,047 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:12,050 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:12,051 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2024-11-14T20:11:12,053 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0 2024-11-14T20:11:12,055 copying build/lib/starfish/spacetx_format/schema/experiment_5.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,058 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2024-11-14T20:11:12,059 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:12,061 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:12,063 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:12,065 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2024-11-14T20:11:12,067 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0 2024-11-14T20:11:12,069 copying build/lib/starfish/spacetx_format/schema/experiment_4.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,071 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:12,072 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:12,074 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/codebook_0.0.0 2024-11-14T20:11:12,076 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2024-11-14T20:11:12,078 copying build/lib/starfish/__main__.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:12,080 copying build/lib/starfish/types.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:12,082 creating build/bdist.linux-armv7l/wheel/starfish/util 2024-11-14T20:11:12,083 copying build/lib/starfish/util/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/util 2024-11-14T20:11:12,085 copying build/lib/starfish/util/plot.py -> build/bdist.linux-armv7l/wheel/./starfish/util 2024-11-14T20:11:12,087 copying build/lib/starfish/spots.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:12,089 copying build/lib/starfish/data.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:12,091 copying build/lib/starfish/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish 2024-11-14T20:11:12,094 creating build/bdist.linux-armv7l/wheel/starfish/core 2024-11-14T20:11:12,095 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology 2024-11-14T20:11:12,097 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2024-11-14T20:11:12,098 copying build/lib/starfish/core/morphology/Filter/structural_label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,101 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2024-11-14T20:11:12,102 copying build/lib/starfish/core/morphology/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2024-11-14T20:11:12,104 copying build/lib/starfish/core/morphology/Filter/test/test_areafilter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2024-11-14T20:11:12,106 copying build/lib/starfish/core/morphology/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2024-11-14T20:11:12,108 copying build/lib/starfish/core/morphology/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2024-11-14T20:11:12,109 copying build/lib/starfish/core/morphology/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,111 copying build/lib/starfish/core/morphology/Filter/map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,113 copying build/lib/starfish/core/morphology/Filter/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,115 copying build/lib/starfish/core/morphology/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,117 copying build/lib/starfish/core/morphology/Filter/areafilter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,119 copying build/lib/starfish/core/morphology/Filter/min_distance_label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2024-11-14T20:11:12,121 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2024-11-14T20:11:12,123 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2024-11-14T20:11:12,125 copying build/lib/starfish/core/morphology/label_image/test/test_label_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image/test 2024-11-14T20:11:12,127 copying build/lib/starfish/core/morphology/label_image/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image/test 2024-11-14T20:11:12,129 copying build/lib/starfish/core/morphology/label_image/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image 2024-11-14T20:11:12,131 copying build/lib/starfish/core/morphology/label_image/label_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image 2024-11-14T20:11:12,134 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2024-11-14T20:11:12,135 copying build/lib/starfish/core/morphology/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2024-11-14T20:11:12,138 copying build/lib/starfish/core/morphology/Segment/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2024-11-14T20:11:12,139 copying build/lib/starfish/core/morphology/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2024-11-14T20:11:12,141 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2024-11-14T20:11:12,143 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2024-11-14T20:11:12,144 copying build/lib/starfish/core/morphology/Merge/test/test_simple.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge/test 2024-11-14T20:11:12,147 copying build/lib/starfish/core/morphology/Merge/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge/test 2024-11-14T20:11:12,148 copying build/lib/starfish/core/morphology/Merge/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2024-11-14T20:11:12,150 copying build/lib/starfish/core/morphology/Merge/simple.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2024-11-14T20:11:12,151 copying build/lib/starfish/core/morphology/Merge/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2024-11-14T20:11:12,154 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2024-11-14T20:11:12,155 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2024-11-14T20:11:12,157 copying build/lib/starfish/core/morphology/Binarize/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize/test 2024-11-14T20:11:12,159 copying build/lib/starfish/core/morphology/Binarize/test/test_threshold.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize/test 2024-11-14T20:11:12,160 copying build/lib/starfish/core/morphology/Binarize/threshold.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2024-11-14T20:11:12,162 copying build/lib/starfish/core/morphology/Binarize/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2024-11-14T20:11:12,164 copying build/lib/starfish/core/morphology/Binarize/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2024-11-14T20:11:12,166 copying build/lib/starfish/core/morphology/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology 2024-11-14T20:11:12,168 copying build/lib/starfish/core/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology 2024-11-14T20:11:12,170 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2024-11-14T20:11:12,172 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,174 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,176 copying build/lib/starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,179 copying build/lib/starfish/core/morphology/binary_mask/test/test_expand.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,180 copying build/lib/starfish/core/morphology/binary_mask/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,182 copying build/lib/starfish/core/morphology/binary_mask/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,184 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2024-11-14T20:11:12,186 copying build/lib/starfish/core/morphology/binary_mask/_io.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2024-11-14T20:11:12,189 copying build/lib/starfish/core/morphology/binary_mask/binary_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2024-11-14T20:11:12,191 copying build/lib/starfish/core/morphology/binary_mask/expand.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2024-11-14T20:11:12,193 copying build/lib/starfish/core/morphology/binary_mask/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2024-11-14T20:11:12,195 creating build/bdist.linux-armv7l/wheel/starfish/core/image 2024-11-14T20:11:12,197 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2024-11-14T20:11:12,198 copying build/lib/starfish/core/image/Filter/call_bases.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,201 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2024-11-14T20:11:12,203 copying build/lib/starfish/core/image/Filter/test/test_filter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,204 copying build/lib/starfish/core/image/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,206 copying build/lib/starfish/core/image/Filter/test/test_api_contract.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,208 copying build/lib/starfish/core/image/Filter/test/test_histogram_matching.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,210 copying build/lib/starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,212 copying build/lib/starfish/core/image/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,214 copying build/lib/starfish/core/image/Filter/test/test_call_bases.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,217 copying build/lib/starfish/core/image/Filter/test/test_linear_unmixing.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,219 copying build/lib/starfish/core/image/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,221 copying build/lib/starfish/core/image/Filter/test/test_white_tophat.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2024-11-14T20:11:12,223 copying build/lib/starfish/core/image/Filter/clip_percentile_to_zero.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,225 copying build/lib/starfish/core/image/Filter/laplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,227 copying build/lib/starfish/core/image/Filter/gaussian_low_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,230 copying build/lib/starfish/core/image/Filter/white_tophat.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,232 copying build/lib/starfish/core/image/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,234 copying build/lib/starfish/core/image/Filter/clip_value_to_zero.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,236 copying build/lib/starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,238 copying build/lib/starfish/core/image/Filter/match_histograms.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,240 copying build/lib/starfish/core/image/Filter/bandpass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,242 copying build/lib/starfish/core/image/Filter/mean_high_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,245 copying build/lib/starfish/core/image/Filter/gaussian_high_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,247 copying build/lib/starfish/core/image/Filter/linear_unmixing.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,249 copying build/lib/starfish/core/image/Filter/map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,254 copying build/lib/starfish/core/image/Filter/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,256 copying build/lib/starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,258 copying build/lib/starfish/core/image/Filter/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,260 copying build/lib/starfish/core/image/Filter/element_wise_mult.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,262 copying build/lib/starfish/core/image/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,264 copying build/lib/starfish/core/image/Filter/clip.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,267 copying build/lib/starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2024-11-14T20:11:12,270 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2024-11-14T20:11:12,272 copying build/lib/starfish/core/image/_registration/_format.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2024-11-14T20:11:12,276 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2024-11-14T20:11:12,278 copying build/lib/starfish/core/image/_registration/test/test_transforms_list.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/test 2024-11-14T20:11:12,280 copying build/lib/starfish/core/image/_registration/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/test 2024-11-14T20:11:12,283 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:12,286 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:12,288 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:12,290 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform/test 2024-11-14T20:11:12,292 copying build/lib/starfish/core/image/_registration/ApplyTransform/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:12,295 copying build/lib/starfish/core/image/_registration/ApplyTransform/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:12,297 copying build/lib/starfish/core/image/_registration/ApplyTransform/warp.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2024-11-14T20:11:12,300 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:12,303 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:12,304 copying build/lib/starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:12,307 copying build/lib/starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform/test 2024-11-14T20:11:12,309 copying build/lib/starfish/core/image/_registration/LearnTransform/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:12,311 copying build/lib/starfish/core/image/_registration/LearnTransform/translation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:12,314 copying build/lib/starfish/core/image/_registration/LearnTransform/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2024-11-14T20:11:12,316 copying build/lib/starfish/core/image/_registration/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2024-11-14T20:11:12,319 copying build/lib/starfish/core/image/_registration/transforms_list.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2024-11-14T20:11:12,322 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2024-11-14T20:11:12,324 copying build/lib/starfish/core/image/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2024-11-14T20:11:12,328 copying build/lib/starfish/core/image/Segment/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2024-11-14T20:11:12,330 copying build/lib/starfish/core/image/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2024-11-14T20:11:12,332 copying build/lib/starfish/core/image/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image 2024-11-14T20:11:12,336 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2024-11-14T20:11:12,338 copying build/lib/starfish/core/intensity_table/concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,341 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2024-11-14T20:11:12,343 copying build/lib/starfish/core/intensity_table/test/test_from_imagestack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,346 copying build/lib/starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,350 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,353 copying build/lib/starfish/core/intensity_table/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,355 copying build/lib/starfish/core/intensity_table/test/test_from_spot_data.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,358 copying build/lib/starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,360 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,363 copying build/lib/starfish/core/intensity_table/test/test_overlap.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,365 copying build/lib/starfish/core/intensity_table/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,367 copying build/lib/starfish/core/intensity_table/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,369 copying build/lib/starfish/core/intensity_table/test/test_to_mermaid.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,371 copying build/lib/starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2024-11-14T20:11:12,373 copying build/lib/starfish/core/intensity_table/intensity_table_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,374 copying build/lib/starfish/core/intensity_table/overlap.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,377 copying build/lib/starfish/core/intensity_table/intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,379 copying build/lib/starfish/core/intensity_table/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,380 copying build/lib/starfish/core/intensity_table/decoded_intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2024-11-14T20:11:12,383 creating build/bdist.linux-armv7l/wheel/starfish/core/test 2024-11-14T20:11:12,384 copying build/lib/starfish/core/test/test_multiprocessing_workflow.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2024-11-14T20:11:12,387 copying build/lib/starfish/core/test/test_display.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2024-11-14T20:11:12,388 copying build/lib/starfish/core/test/test_synthetic_spot_creation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2024-11-14T20:11:12,390 copying build/lib/starfish/core/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2024-11-14T20:11:12,392 copying build/lib/starfish/core/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2024-11-14T20:11:12,395 creating build/bdist.linux-armv7l/wheel/starfish/core/config 2024-11-14T20:11:12,396 creating build/bdist.linux-armv7l/wheel/starfish/core/config/test 2024-11-14T20:11:12,398 copying build/lib/starfish/core/config/test/test_config.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config/test 2024-11-14T20:11:12,400 copying build/lib/starfish/core/config/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config/test 2024-11-14T20:11:12,402 copying build/lib/starfish/core/config/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config 2024-11-14T20:11:12,405 creating build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2024-11-14T20:11:12,406 copying build/lib/starfish/core/segmentation_mask/segmentation_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/segmentation_mask 2024-11-14T20:11:12,408 copying build/lib/starfish/core/segmentation_mask/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/segmentation_mask 2024-11-14T20:11:12,410 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment 2024-11-14T20:11:12,411 copying build/lib/starfish/core/experiment/experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2024-11-14T20:11:12,414 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2024-11-14T20:11:12,416 copying build/lib/starfish/core/experiment/test/test_version.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2024-11-14T20:11:12,418 copying build/lib/starfish/core/experiment/test/test_experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2024-11-14T20:11:12,420 copying build/lib/starfish/core/experiment/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2024-11-14T20:11:12,423 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2024-11-14T20:11:12,425 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2024-11-14T20:11:12,428 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2024-11-14T20:11:12,430 copying build/lib/starfish/core/experiment/builder/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2024-11-14T20:11:12,433 copying build/lib/starfish/core/experiment/builder/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2024-11-14T20:11:12,435 copying build/lib/starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2024-11-14T20:11:12,437 copying build/lib/starfish/core/experiment/builder/test/test_orderediterator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2024-11-14T20:11:12,438 copying build/lib/starfish/core/experiment/builder/test/test_inplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2024-11-14T20:11:12,440 copying build/lib/starfish/core/experiment/builder/test/test_small_axis.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2024-11-14T20:11:12,443 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,444 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,446 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,449 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,451 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,453 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2024-11-14T20:11:12,455 copying build/lib/starfish/core/experiment/builder/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2024-11-14T20:11:12,457 copying build/lib/starfish/core/experiment/builder/structured_formatter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,460 copying build/lib/starfish/core/experiment/builder/orderediterator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,464 copying build/lib/starfish/core/experiment/builder/providers.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,466 copying build/lib/starfish/core/experiment/builder/defaultproviders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,468 copying build/lib/starfish/core/experiment/builder/builder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,471 copying build/lib/starfish/core/experiment/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,472 copying build/lib/starfish/core/experiment/builder/inplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2024-11-14T20:11:12,474 copying build/lib/starfish/core/experiment/version.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2024-11-14T20:11:12,476 copying build/lib/starfish/core/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2024-11-14T20:11:12,478 copying build/lib/starfish/core/compat.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,480 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2024-11-14T20:11:12,482 copying build/lib/starfish/core/expression_matrix/concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2024-11-14T20:11:12,484 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2024-11-14T20:11:12,485 copying build/lib/starfish/core/expression_matrix/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2024-11-14T20:11:12,487 copying build/lib/starfish/core/expression_matrix/test/test_serialization.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2024-11-14T20:11:12,489 copying build/lib/starfish/core/expression_matrix/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2024-11-14T20:11:12,490 copying build/lib/starfish/core/expression_matrix/expression_matrix.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2024-11-14T20:11:12,492 copying build/lib/starfish/core/expression_matrix/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2024-11-14T20:11:12,494 creating build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2024-11-14T20:11:12,495 copying build/lib/starfish/core/spacetx_format/test_fov_manifest.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,497 copying build/lib/starfish/core/spacetx_format/test_fuzz.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,499 copying build/lib/starfish/core/spacetx_format/cli.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,500 copying build/lib/starfish/core/spacetx_format/validate_sptx.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,503 copying build/lib/starfish/core/spacetx_format/test_field_of_view.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,504 copying build/lib/starfish/core/spacetx_format/test_experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,506 copying build/lib/starfish/core/spacetx_format/test_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,508 copying build/lib/starfish/core/spacetx_format/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,511 copying build/lib/starfish/core/spacetx_format/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,512 copying build/lib/starfish/core/spacetx_format/test_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2024-11-14T20:11:12,514 copying build/lib/starfish/core/errors.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,516 creating build/bdist.linux-armv7l/wheel/starfish/core/util 2024-11-14T20:11:12,518 copying build/lib/starfish/core/util/logging.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,520 creating build/bdist.linux-armv7l/wheel/starfish/core/util/test 2024-11-14T20:11:12,522 copying build/lib/starfish/core/util/test/test_levels.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2024-11-14T20:11:12,525 copying build/lib/starfish/core/util/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2024-11-14T20:11:12,527 copying build/lib/starfish/core/util/test/test_preserve_float_range.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2024-11-14T20:11:12,530 copying build/lib/starfish/core/util/levels.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,532 copying build/lib/starfish/core/util/clock.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,534 copying build/lib/starfish/core/util/config.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,536 copying build/lib/starfish/core/util/try_import.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,538 copying build/lib/starfish/core/util/argparse.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,540 creating build/bdist.linux-armv7l/wheel/starfish/core/util/click 2024-11-14T20:11:12,542 copying build/lib/starfish/core/util/click/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/click 2024-11-14T20:11:12,544 copying build/lib/starfish/core/util/enum.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,546 copying build/lib/starfish/core/util/exec.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,548 copying build/lib/starfish/core/util/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2024-11-14T20:11:12,549 copying build/lib/starfish/core/_display.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,552 creating build/bdist.linux-armv7l/wheel/starfish/core/spots 2024-11-14T20:11:12,554 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,556 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,557 copying build/lib/starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,568 copying build/lib/starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,576 copying build/lib/starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,581 copying build/lib/starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,583 copying build/lib/starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,585 copying build/lib/starfish/core/spots/DecodeSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,586 copying build/lib/starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,589 copying build/lib/starfish/core/spots/DecodeSpots/test/test_check_all.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2024-11-14T20:11:12,591 copying build/lib/starfish/core/spots/DecodeSpots/check_all_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,593 copying build/lib/starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,595 copying build/lib/starfish/core/spots/DecodeSpots/metric_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,597 copying build/lib/starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,599 copying build/lib/starfish/core/spots/DecodeSpots/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,601 copying build/lib/starfish/core/spots/DecodeSpots/trace_builders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,603 copying build/lib/starfish/core/spots/DecodeSpots/check_all_funcs.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,605 copying build/lib/starfish/core/spots/DecodeSpots/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,608 copying build/lib/starfish/core/spots/DecodeSpots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2024-11-14T20:11:12,610 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2024-11-14T20:11:12,611 copying build/lib/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,615 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2024-11-14T20:11:12,617 copying build/lib/starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2024-11-14T20:11:12,620 copying build/lib/starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2024-11-14T20:11:12,622 copying build/lib/starfish/core/spots/FindSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2024-11-14T20:11:12,624 copying build/lib/starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2024-11-14T20:11:12,627 copying build/lib/starfish/core/spots/FindSpots/blob.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,630 copying build/lib/starfish/core/spots/FindSpots/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,632 copying build/lib/starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,635 copying build/lib/starfish/core/spots/FindSpots/spot_finding_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,637 copying build/lib/starfish/core/spots/FindSpots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2024-11-14T20:11:12,639 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2024-11-14T20:11:12,640 copying build/lib/starfish/core/spots/AssignTargets/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2024-11-14T20:11:12,642 copying build/lib/starfish/core/spots/AssignTargets/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2024-11-14T20:11:12,644 copying build/lib/starfish/core/spots/AssignTargets/label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2024-11-14T20:11:12,646 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2024-11-14T20:11:12,648 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,649 copying build/lib/starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,651 copying build/lib/starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,653 copying build/lib/starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,655 copying build/lib/starfish/core/spots/DetectPixels/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,656 copying build/lib/starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2024-11-14T20:11:12,658 copying build/lib/starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2024-11-14T20:11:12,660 copying build/lib/starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2024-11-14T20:11:12,663 copying build/lib/starfish/core/spots/DetectPixels/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2024-11-14T20:11:12,665 copying build/lib/starfish/core/spots/DetectPixels/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2024-11-14T20:11:12,667 copying build/lib/starfish/core/spots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots 2024-11-14T20:11:12,669 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook 2024-11-14T20:11:12,670 copying build/lib/starfish/core/codebook/_format.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2024-11-14T20:11:12,673 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2024-11-14T20:11:12,674 copying build/lib/starfish/core/codebook/test/test_metric_decode.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,676 copying build/lib/starfish/core/codebook/test/test_to_json.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,677 copying build/lib/starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,679 copying build/lib/starfish/core/codebook/test/test_normalize_code_traces.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,681 copying build/lib/starfish/core/codebook/test/test_code_length.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,683 copying build/lib/starfish/core/codebook/test/test_from_code_array.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,685 copying build/lib/starfish/core/codebook/test/test_per_round_max_decode.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,687 copying build/lib/starfish/core/codebook/test/test_approximate_nearest_code.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,689 copying build/lib/starfish/core/codebook/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,690 copying build/lib/starfish/core/codebook/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2024-11-14T20:11:12,692 copying build/lib/starfish/core/codebook/codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2024-11-14T20:11:12,695 copying build/lib/starfish/core/codebook/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2024-11-14T20:11:12,697 creating build/bdist.linux-armv7l/wheel/starfish/core/types 2024-11-14T20:11:12,698 copying build/lib/starfish/core/types/_spot_finding_results.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,701 creating build/bdist.linux-armv7l/wheel/starfish/core/types/test 2024-11-14T20:11:12,702 copying build/lib/starfish/core/types/test/test_saving_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2024-11-14T20:11:12,704 copying build/lib/starfish/core/types/test/test_decoded_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2024-11-14T20:11:12,706 copying build/lib/starfish/core/types/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2024-11-14T20:11:12,708 copying build/lib/starfish/core/types/_decoded_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,710 copying build/lib/starfish/core/types/_constants.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,712 copying build/lib/starfish/core/types/_spot_attributes.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,713 copying build/lib/starfish/core/types/_functionsource.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,715 copying build/lib/starfish/core/types/_validated_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,717 copying build/lib/starfish/core/types/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2024-11-14T20:11:12,719 copying build/lib/starfish/core/_version.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,721 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2024-11-14T20:11:12,723 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2024-11-14T20:11:12,725 copying build/lib/starfish/core/imagestack/test/test_from_numpy_array.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,727 copying build/lib/starfish/core/imagestack/test/test_cropped_load.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,729 copying build/lib/starfish/core/imagestack/test/test_slice_ops.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,731 copying build/lib/starfish/core/imagestack/test/test_index.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,733 copying build/lib/starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,736 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2024-11-14T20:11:12,737 copying build/lib/starfish/core/imagestack/test/factories/with_coords.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,739 copying build/lib/starfish/core/imagestack/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,741 copying build/lib/starfish/core/imagestack/test/factories/from_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,742 copying build/lib/starfish/core/imagestack/test/factories/synthetic_stack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,744 copying build/lib/starfish/core/imagestack/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,746 copying build/lib/starfish/core/imagestack/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2024-11-14T20:11:12,747 copying build/lib/starfish/core/imagestack/test/imagestack_test_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,750 copying build/lib/starfish/core/imagestack/test/test_export.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,752 copying build/lib/starfish/core/imagestack/test/test_apply.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,753 copying build/lib/starfish/core/imagestack/test/test_labeled_indices.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,756 copying build/lib/starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,758 copying build/lib/starfish/core/imagestack/test/test_metadata.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,760 copying build/lib/starfish/core/imagestack/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,762 copying build/lib/starfish/core/imagestack/test/test_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,764 copying build/lib/starfish/core/imagestack/test/test_from_tilefetcher.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,766 copying build/lib/starfish/core/imagestack/test/test_max_proj.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2024-11-14T20:11:12,768 copying build/lib/starfish/core/imagestack/indexing_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2024-11-14T20:11:12,770 copying build/lib/starfish/core/imagestack/imagestack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2024-11-14T20:11:12,774 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2024-11-14T20:11:12,775 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2024-11-14T20:11:12,777 copying build/lib/starfish/core/imagestack/parser/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/numpy 2024-11-14T20:11:12,780 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:12,781 copying build/lib/starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:12,784 copying build/lib/starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tilefetcher 2024-11-14T20:11:12,786 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2024-11-14T20:11:12,787 copying build/lib/starfish/core/imagestack/parser/tileset/_parser.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tileset 2024-11-14T20:11:12,790 copying build/lib/starfish/core/imagestack/parser/tileset/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tileset 2024-11-14T20:11:12,792 copying build/lib/starfish/core/imagestack/parser/crop.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2024-11-14T20:11:12,795 copying build/lib/starfish/core/imagestack/parser/_tiledata.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2024-11-14T20:11:12,797 copying build/lib/starfish/core/imagestack/parser/_key.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2024-11-14T20:11:12,799 copying build/lib/starfish/core/imagestack/parser/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2024-11-14T20:11:12,800 copying build/lib/starfish/core/imagestack/physical_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2024-11-14T20:11:12,802 copying build/lib/starfish/core/imagestack/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2024-11-14T20:11:12,804 copying build/lib/starfish/core/imagestack/dataorder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2024-11-14T20:11:12,806 copying build/lib/starfish/core/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,808 copying build/lib/starfish/core/starfish.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2024-11-14T20:11:12,810 creating build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2024-11-14T20:11:12,811 copying build/lib/starfish/core/pipeline/algorithmbase.py -> build/bdist.linux-armv7l/wheel/./starfish/core/pipeline 2024-11-14T20:11:12,814 copying build/lib/starfish/core/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/pipeline 2024-11-14T20:11:12,815 running install_egg_info 2024-11-14T20:11:12,849 Copying starfish.egg-info to build/bdist.linux-armv7l/wheel/./starfish-0.3.1-py3.11.egg-info 2024-11-14T20:11:12,861 running install_scripts 2024-11-14T20:11:12,881 creating build/bdist.linux-armv7l/wheel/starfish-0.3.1.dist-info/WHEEL 2024-11-14T20:11:12,883 creating '/tmp/pip-wheel-ckeh21yh/starfish-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-14T20:11:12,886 adding 'starfish/REQUIREMENTS-STRICT.txt' 2024-11-14T20:11:12,887 adding 'starfish/__init__.py' 2024-11-14T20:11:12,888 adding 'starfish/__main__.py' 2024-11-14T20:11:12,889 adding 'starfish/config.py' 2024-11-14T20:11:12,891 adding 'starfish/data.py' 2024-11-14T20:11:12,892 adding 'starfish/image.py' 2024-11-14T20:11:12,893 adding 'starfish/morphology.py' 2024-11-14T20:11:12,895 adding 'starfish/spots.py' 2024-11-14T20:11:12,896 adding 'starfish/test.py' 2024-11-14T20:11:12,897 adding 'starfish/types.py' 2024-11-14T20:11:12,899 adding 'starfish/core/__init__.py' 2024-11-14T20:11:12,901 adding 'starfish/core/_display.py' 2024-11-14T20:11:12,902 adding 'starfish/core/_version.py' 2024-11-14T20:11:12,904 adding 'starfish/core/compat.py' 2024-11-14T20:11:12,905 adding 'starfish/core/errors.py' 2024-11-14T20:11:12,907 adding 'starfish/core/starfish.py' 2024-11-14T20:11:12,908 adding 'starfish/core/codebook/__init__.py' 2024-11-14T20:11:12,909 adding 'starfish/core/codebook/_format.py' 2024-11-14T20:11:12,913 adding 'starfish/core/codebook/codebook.py' 2024-11-14T20:11:12,915 adding 'starfish/core/codebook/test/__init__.py' 2024-11-14T20:11:12,917 adding 'starfish/core/codebook/test/factories.py' 2024-11-14T20:11:12,918 adding 'starfish/core/codebook/test/test_approximate_nearest_code.py' 2024-11-14T20:11:12,919 adding 'starfish/core/codebook/test/test_code_length.py' 2024-11-14T20:11:12,920 adding 'starfish/core/codebook/test/test_from_code_array.py' 2024-11-14T20:11:12,922 adding 'starfish/core/codebook/test/test_metric_decode.py' 2024-11-14T20:11:12,923 adding 'starfish/core/codebook/test/test_normalize_code_traces.py' 2024-11-14T20:11:12,925 adding 'starfish/core/codebook/test/test_per_round_max_decode.py' 2024-11-14T20:11:12,926 adding 'starfish/core/codebook/test/test_synthetic_one_hot_codebook.py' 2024-11-14T20:11:12,927 adding 'starfish/core/codebook/test/test_to_json.py' 2024-11-14T20:11:12,929 adding 'starfish/core/config/__init__.py' 2024-11-14T20:11:12,931 adding 'starfish/core/config/test/__init__.py' 2024-11-14T20:11:12,932 adding 'starfish/core/config/test/test_config.py' 2024-11-14T20:11:12,934 adding 'starfish/core/experiment/__init__.py' 2024-11-14T20:11:12,936 adding 'starfish/core/experiment/experiment.py' 2024-11-14T20:11:12,937 adding 'starfish/core/experiment/version.py' 2024-11-14T20:11:12,939 adding 'starfish/core/experiment/builder/__init__.py' 2024-11-14T20:11:12,941 adding 'starfish/core/experiment/builder/builder.py' 2024-11-14T20:11:12,942 adding 'starfish/core/experiment/builder/defaultproviders.py' 2024-11-14T20:11:12,944 adding 'starfish/core/experiment/builder/inplace.py' 2024-11-14T20:11:12,945 adding 'starfish/core/experiment/builder/orderediterator.py' 2024-11-14T20:11:12,946 adding 'starfish/core/experiment/builder/providers.py' 2024-11-14T20:11:12,948 adding 'starfish/core/experiment/builder/structured_formatter.py' 2024-11-14T20:11:12,950 adding 'starfish/core/experiment/builder/test/__init__.py' 2024-11-14T20:11:12,951 adding 'starfish/core/experiment/builder/test/test_inplace.py' 2024-11-14T20:11:12,952 adding 'starfish/core/experiment/builder/test/test_orderediterator.py' 2024-11-14T20:11:12,954 adding 'starfish/core/experiment/builder/test/test_small_axis.py' 2024-11-14T20:11:12,955 adding 'starfish/core/experiment/builder/test/factories/__init__.py' 2024-11-14T20:11:12,957 adding 'starfish/core/experiment/builder/test/factories/all_purpose.py' 2024-11-14T20:11:12,958 adding 'starfish/core/experiment/builder/test/factories/unique_tiles.py' 2024-11-14T20:11:12,960 adding 'starfish/core/experiment/builder/test/structured_formatter/__init__.py' 2024-11-14T20:11:12,961 adding 'starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py' 2024-11-14T20:11:12,963 adding 'starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py' 2024-11-14T20:11:12,964 adding 'starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py' 2024-11-14T20:11:12,966 adding 'starfish/core/experiment/builder/test/structured_formatter/util.py' 2024-11-14T20:11:12,967 adding 'starfish/core/experiment/test/__init__.py' 2024-11-14T20:11:12,969 adding 'starfish/core/experiment/test/test_experiment.py' 2024-11-14T20:11:12,970 adding 'starfish/core/experiment/test/test_version.py' 2024-11-14T20:11:12,972 adding 'starfish/core/expression_matrix/__init__.py' 2024-11-14T20:11:12,973 adding 'starfish/core/expression_matrix/concatenate.py' 2024-11-14T20:11:12,974 adding 'starfish/core/expression_matrix/expression_matrix.py' 2024-11-14T20:11:12,976 adding 'starfish/core/expression_matrix/test/__init__.py' 2024-11-14T20:11:12,977 adding 'starfish/core/expression_matrix/test/test_concatenate.py' 2024-11-14T20:11:12,978 adding 'starfish/core/expression_matrix/test/test_serialization.py' 2024-11-14T20:11:12,980 adding 'starfish/core/image/__init__.py' 2024-11-14T20:11:12,982 adding 'starfish/core/image/Filter/__init__.py' 2024-11-14T20:11:12,983 adding 'starfish/core/image/Filter/_base.py' 2024-11-14T20:11:12,985 adding 'starfish/core/image/Filter/bandpass.py' 2024-11-14T20:11:12,987 adding 'starfish/core/image/Filter/call_bases.py' 2024-11-14T20:11:12,988 adding 'starfish/core/image/Filter/clip.py' 2024-11-14T20:11:12,989 adding 'starfish/core/image/Filter/clip_percentile_to_zero.py' 2024-11-14T20:11:12,991 adding 'starfish/core/image/Filter/clip_value_to_zero.py' 2024-11-14T20:11:12,992 adding 'starfish/core/image/Filter/element_wise_mult.py' 2024-11-14T20:11:12,994 adding 'starfish/core/image/Filter/gaussian_high_pass.py' 2024-11-14T20:11:12,995 adding 'starfish/core/image/Filter/gaussian_low_pass.py' 2024-11-14T20:11:12,997 adding 'starfish/core/image/Filter/ilastik_pre_trained_probability.py' 2024-11-14T20:11:12,998 adding 'starfish/core/image/Filter/laplace.py' 2024-11-14T20:11:12,999 adding 'starfish/core/image/Filter/linear_unmixing.py' 2024-11-14T20:11:13,001 adding 'starfish/core/image/Filter/map.py' 2024-11-14T20:11:13,002 adding 'starfish/core/image/Filter/match_histograms.py' 2024-11-14T20:11:13,004 adding 'starfish/core/image/Filter/mean_high_pass.py' 2024-11-14T20:11:13,006 adding 'starfish/core/image/Filter/reduce.py' 2024-11-14T20:11:13,007 adding 'starfish/core/image/Filter/richardson_lucy_deconvolution.py' 2024-11-14T20:11:13,009 adding 'starfish/core/image/Filter/util.py' 2024-11-14T20:11:13,010 adding 'starfish/core/image/Filter/white_tophat.py' 2024-11-14T20:11:13,012 adding 'starfish/core/image/Filter/zero_by_channel_magnitude.py' 2024-11-14T20:11:13,014 adding 'starfish/core/image/Filter/test/__init__.py' 2024-11-14T20:11:13,015 adding 'starfish/core/image/Filter/test/test_api_contract.py' 2024-11-14T20:11:13,017 adding 'starfish/core/image/Filter/test/test_call_bases.py' 2024-11-14T20:11:13,018 adding 'starfish/core/image/Filter/test/test_filter.py' 2024-11-14T20:11:13,019 adding 'starfish/core/image/Filter/test/test_histogram_matching.py' 2024-11-14T20:11:13,020 adding 'starfish/core/image/Filter/test/test_linear_unmixing.py' 2024-11-14T20:11:13,021 adding 'starfish/core/image/Filter/test/test_map.py' 2024-11-14T20:11:13,023 adding 'starfish/core/image/Filter/test/test_reduce.py' 2024-11-14T20:11:13,024 adding 'starfish/core/image/Filter/test/test_white_tophat.py' 2024-11-14T20:11:13,025 adding 'starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py' 2024-11-14T20:11:13,027 adding 'starfish/core/image/Segment/__init__.py' 2024-11-14T20:11:13,028 adding 'starfish/core/image/Segment/_base.py' 2024-11-14T20:11:13,030 adding 'starfish/core/image/Segment/watershed.py' 2024-11-14T20:11:13,032 adding 'starfish/core/image/_registration/__init__.py' 2024-11-14T20:11:13,033 adding 'starfish/core/image/_registration/_format.py' 2024-11-14T20:11:13,034 adding 'starfish/core/image/_registration/transforms_list.py' 2024-11-14T20:11:13,036 adding 'starfish/core/image/_registration/ApplyTransform/__init__.py' 2024-11-14T20:11:13,037 adding 'starfish/core/image/_registration/ApplyTransform/_base.py' 2024-11-14T20:11:13,039 adding 'starfish/core/image/_registration/ApplyTransform/warp.py' 2024-11-14T20:11:13,040 adding 'starfish/core/image/_registration/ApplyTransform/test/__init__.py' 2024-11-14T20:11:13,042 adding 'starfish/core/image/_registration/ApplyTransform/test/test_warp.py' 2024-11-14T20:11:13,043 adding 'starfish/core/image/_registration/LearnTransform/__init__.py' 2024-11-14T20:11:13,045 adding 'starfish/core/image/_registration/LearnTransform/_base.py' 2024-11-14T20:11:13,046 adding 'starfish/core/image/_registration/LearnTransform/translation.py' 2024-11-14T20:11:13,048 adding 'starfish/core/image/_registration/LearnTransform/test/__init__.py' 2024-11-14T20:11:13,049 adding 'starfish/core/image/_registration/LearnTransform/test/test_translation.py' 2024-11-14T20:11:13,050 adding 'starfish/core/image/_registration/test/__init__.py' 2024-11-14T20:11:13,052 adding 'starfish/core/image/_registration/test/test_transforms_list.py' 2024-11-14T20:11:13,053 adding 'starfish/core/imagestack/__init__.py' 2024-11-14T20:11:13,055 adding 'starfish/core/imagestack/dataorder.py' 2024-11-14T20:11:13,060 adding 'starfish/core/imagestack/imagestack.py' 2024-11-14T20:11:13,062 adding 'starfish/core/imagestack/indexing_utils.py' 2024-11-14T20:11:13,063 adding 'starfish/core/imagestack/physical_coordinates.py' 2024-11-14T20:11:13,064 adding 'starfish/core/imagestack/parser/__init__.py' 2024-11-14T20:11:13,066 adding 'starfish/core/imagestack/parser/_key.py' 2024-11-14T20:11:13,067 adding 'starfish/core/imagestack/parser/_tiledata.py' 2024-11-14T20:11:13,069 adding 'starfish/core/imagestack/parser/crop.py' 2024-11-14T20:11:13,071 adding 'starfish/core/imagestack/parser/numpy/__init__.py' 2024-11-14T20:11:13,073 adding 'starfish/core/imagestack/parser/tilefetcher/__init__.py' 2024-11-14T20:11:13,074 adding 'starfish/core/imagestack/parser/tilefetcher/_parser.py' 2024-11-14T20:11:13,076 adding 'starfish/core/imagestack/parser/tileset/__init__.py' 2024-11-14T20:11:13,078 adding 'starfish/core/imagestack/parser/tileset/_parser.py' 2024-11-14T20:11:13,080 adding 'starfish/core/imagestack/test/__init__.py' 2024-11-14T20:11:13,082 adding 'starfish/core/imagestack/test/imagestack_test_utils.py' 2024-11-14T20:11:13,084 adding 'starfish/core/imagestack/test/test_apply.py' 2024-11-14T20:11:13,086 adding 'starfish/core/imagestack/test/test_coordinates.py' 2024-11-14T20:11:13,088 adding 'starfish/core/imagestack/test/test_cropped_load.py' 2024-11-14T20:11:13,090 adding 'starfish/core/imagestack/test/test_export.py' 2024-11-14T20:11:13,091 adding 'starfish/core/imagestack/test/test_from_numpy_array.py' 2024-11-14T20:11:13,093 adding 'starfish/core/imagestack/test/test_from_tilefetcher.py' 2024-11-14T20:11:13,095 adding 'starfish/core/imagestack/test/test_index.py' 2024-11-14T20:11:13,097 adding 'starfish/core/imagestack/test/test_labeled_indices.py' 2024-11-14T20:11:13,098 adding 'starfish/core/imagestack/test/test_max_proj.py' 2024-11-14T20:11:13,100 adding 'starfish/core/imagestack/test/test_metadata.py' 2024-11-14T20:11:13,102 adding 'starfish/core/imagestack/test/test_physical_coordinate_calculator.py' 2024-11-14T20:11:13,104 adding 'starfish/core/imagestack/test/test_slice_ops.py' 2024-11-14T20:11:13,105 adding 'starfish/core/imagestack/test/test_slicedimage_dtype.py' 2024-11-14T20:11:13,108 adding 'starfish/core/imagestack/test/factories/__init__.py' 2024-11-14T20:11:13,109 adding 'starfish/core/imagestack/test/factories/all_purpose.py' 2024-11-14T20:11:13,111 adding 'starfish/core/imagestack/test/factories/from_codebook.py' 2024-11-14T20:11:13,113 adding 'starfish/core/imagestack/test/factories/synthetic_stack.py' 2024-11-14T20:11:13,114 adding 'starfish/core/imagestack/test/factories/unique_tiles.py' 2024-11-14T20:11:13,116 adding 'starfish/core/imagestack/test/factories/with_coords.py' 2024-11-14T20:11:13,118 adding 'starfish/core/intensity_table/__init__.py' 2024-11-14T20:11:13,120 adding 'starfish/core/intensity_table/concatenate.py' 2024-11-14T20:11:13,122 adding 'starfish/core/intensity_table/decoded_intensity_table.py' 2024-11-14T20:11:13,125 adding 'starfish/core/intensity_table/intensity_table.py' 2024-11-14T20:11:13,127 adding 'starfish/core/intensity_table/intensity_table_coordinates.py' 2024-11-14T20:11:13,129 adding 'starfish/core/intensity_table/overlap.py' 2024-11-14T20:11:13,131 adding 'starfish/core/intensity_table/test/__init__.py' 2024-11-14T20:11:13,133 adding 'starfish/core/intensity_table/test/factories.py' 2024-11-14T20:11:13,135 adding 'starfish/core/intensity_table/test/test_concatenate.py' 2024-11-14T20:11:13,136 adding 'starfish/core/intensity_table/test/test_empty_intensity_table.py' 2024-11-14T20:11:13,138 adding 'starfish/core/intensity_table/test/test_from_imagestack.py' 2024-11-14T20:11:13,140 adding 'starfish/core/intensity_table/test/test_from_spot_data.py' 2024-11-14T20:11:13,142 adding 'starfish/core/intensity_table/test/test_intensity_table_coords.py' 2024-11-14T20:11:13,143 adding 'starfish/core/intensity_table/test/test_intensity_table_serialization.py' 2024-11-14T20:11:13,145 adding 'starfish/core/intensity_table/test/test_overlap.py' 2024-11-14T20:11:13,147 adding 'starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py' 2024-11-14T20:11:13,149 adding 'starfish/core/intensity_table/test/test_synthetic_intensities.py' 2024-11-14T20:11:13,150 adding 'starfish/core/intensity_table/test/test_to_mermaid.py' 2024-11-14T20:11:13,152 adding 'starfish/core/morphology/__init__.py' 2024-11-14T20:11:13,154 adding 'starfish/core/morphology/util.py' 2024-11-14T20:11:13,156 adding 'starfish/core/morphology/Binarize/__init__.py' 2024-11-14T20:11:13,158 adding 'starfish/core/morphology/Binarize/_base.py' 2024-11-14T20:11:13,159 adding 'starfish/core/morphology/Binarize/threshold.py' 2024-11-14T20:11:13,161 adding 'starfish/core/morphology/Binarize/test/__init__.py' 2024-11-14T20:11:13,163 adding 'starfish/core/morphology/Binarize/test/test_threshold.py' 2024-11-14T20:11:13,165 adding 'starfish/core/morphology/Filter/__init__.py' 2024-11-14T20:11:13,167 adding 'starfish/core/morphology/Filter/_base.py' 2024-11-14T20:11:13,168 adding 'starfish/core/morphology/Filter/areafilter.py' 2024-11-14T20:11:13,170 adding 'starfish/core/morphology/Filter/map.py' 2024-11-14T20:11:13,172 adding 'starfish/core/morphology/Filter/min_distance_label.py' 2024-11-14T20:11:13,173 adding 'starfish/core/morphology/Filter/reduce.py' 2024-11-14T20:11:13,174 adding 'starfish/core/morphology/Filter/structural_label.py' 2024-11-14T20:11:13,176 adding 'starfish/core/morphology/Filter/test/__init__.py' 2024-11-14T20:11:13,177 adding 'starfish/core/morphology/Filter/test/test_areafilter.py' 2024-11-14T20:11:13,178 adding 'starfish/core/morphology/Filter/test/test_map.py' 2024-11-14T20:11:13,179 adding 'starfish/core/morphology/Filter/test/test_reduce.py' 2024-11-14T20:11:13,181 adding 'starfish/core/morphology/Merge/__init__.py' 2024-11-14T20:11:13,182 adding 'starfish/core/morphology/Merge/_base.py' 2024-11-14T20:11:13,184 adding 'starfish/core/morphology/Merge/simple.py' 2024-11-14T20:11:13,185 adding 'starfish/core/morphology/Merge/test/__init__.py' 2024-11-14T20:11:13,187 adding 'starfish/core/morphology/Merge/test/test_simple.py' 2024-11-14T20:11:13,188 adding 'starfish/core/morphology/Segment/__init__.py' 2024-11-14T20:11:13,190 adding 'starfish/core/morphology/Segment/_base.py' 2024-11-14T20:11:13,191 adding 'starfish/core/morphology/Segment/watershed.py' 2024-11-14T20:11:13,193 adding 'starfish/core/morphology/binary_mask/__init__.py' 2024-11-14T20:11:13,194 adding 'starfish/core/morphology/binary_mask/_io.py' 2024-11-14T20:11:13,198 adding 'starfish/core/morphology/binary_mask/binary_mask.py' 2024-11-14T20:11:13,199 adding 'starfish/core/morphology/binary_mask/expand.py' 2024-11-14T20:11:13,201 adding 'starfish/core/morphology/binary_mask/test/__init__.py' 2024-11-14T20:11:13,202 adding 'starfish/core/morphology/binary_mask/test/factories.py' 2024-11-14T20:11:13,203 adding 'starfish/core/morphology/binary_mask/test/test_binary_mask.py' 2024-11-14T20:11:13,205 adding 'starfish/core/morphology/binary_mask/test/test_expand.py' 2024-11-14T20:11:13,206 adding 'starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py' 2024-11-14T20:11:13,208 adding 'starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py' 2024-11-14T20:11:13,209 adding 'starfish/core/morphology/label_image/__init__.py' 2024-11-14T20:11:13,211 adding 'starfish/core/morphology/label_image/label_image.py' 2024-11-14T20:11:13,213 adding 'starfish/core/morphology/label_image/test/__init__.py' 2024-11-14T20:11:13,214 adding 'starfish/core/morphology/label_image/test/test_label_image.py' 2024-11-14T20:11:13,216 adding 'starfish/core/pipeline/__init__.py' 2024-11-14T20:11:13,217 adding 'starfish/core/pipeline/algorithmbase.py' 2024-11-14T20:11:13,219 adding 'starfish/core/segmentation_mask/__init__.py' 2024-11-14T20:11:13,220 adding 'starfish/core/segmentation_mask/segmentation_mask.py' 2024-11-14T20:11:13,222 adding 'starfish/core/spacetx_format/__init__.py' 2024-11-14T20:11:13,223 adding 'starfish/core/spacetx_format/cli.py' 2024-11-14T20:11:13,224 adding 'starfish/core/spacetx_format/test_codebook.py' 2024-11-14T20:11:13,226 adding 'starfish/core/spacetx_format/test_coordinates.py' 2024-11-14T20:11:13,227 adding 'starfish/core/spacetx_format/test_experiment.py' 2024-11-14T20:11:13,228 adding 'starfish/core/spacetx_format/test_field_of_view.py' 2024-11-14T20:11:13,229 adding 'starfish/core/spacetx_format/test_fov_manifest.py' 2024-11-14T20:11:13,230 adding 'starfish/core/spacetx_format/test_fuzz.py' 2024-11-14T20:11:13,232 adding 'starfish/core/spacetx_format/util.py' 2024-11-14T20:11:13,234 adding 'starfish/core/spacetx_format/validate_sptx.py' 2024-11-14T20:11:13,235 adding 'starfish/core/spots/__init__.py' 2024-11-14T20:11:13,237 adding 'starfish/core/spots/AssignTargets/__init__.py' 2024-11-14T20:11:13,238 adding 'starfish/core/spots/AssignTargets/_base.py' 2024-11-14T20:11:13,239 adding 'starfish/core/spots/AssignTargets/label.py' 2024-11-14T20:11:13,241 adding 'starfish/core/spots/DecodeSpots/__init__.py' 2024-11-14T20:11:13,242 adding 'starfish/core/spots/DecodeSpots/_base.py' 2024-11-14T20:11:13,246 adding 'starfish/core/spots/DecodeSpots/check_all_decoder.py' 2024-11-14T20:11:13,251 adding 'starfish/core/spots/DecodeSpots/check_all_funcs.py' 2024-11-14T20:11:13,252 adding 'starfish/core/spots/DecodeSpots/metric_decoder.py' 2024-11-14T20:11:13,254 adding 'starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py' 2024-11-14T20:11:13,255 adding 'starfish/core/spots/DecodeSpots/simple_lookup_decoder.py' 2024-11-14T20:11:13,256 adding 'starfish/core/spots/DecodeSpots/trace_builders.py' 2024-11-14T20:11:13,258 adding 'starfish/core/spots/DecodeSpots/util.py' 2024-11-14T20:11:13,260 adding 'starfish/core/spots/DecodeSpots/test/__init__.py' 2024-11-14T20:11:13,261 adding 'starfish/core/spots/DecodeSpots/test/test_check_all.py' 2024-11-14T20:11:13,263 adding 'starfish/core/spots/DecodeSpots/test/test_composite_codebook.py' 2024-11-14T20:11:13,264 adding 'starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py' 2024-11-14T20:11:13,266 adding 'starfish/core/spots/DecodeSpots/test/test_metric_decoder.py' 2024-11-14T20:11:13,267 adding 'starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py' 2024-11-14T20:11:13,268 adding 'starfish/core/spots/DecodeSpots/test/test_spot_finders.py' 2024-11-14T20:11:13,270 adding 'starfish/core/spots/DecodeSpots/test/test_trace_builders.py' 2024-11-14T20:11:13,271 adding 'starfish/core/spots/DetectPixels/__init__.py' 2024-11-14T20:11:13,273 adding 'starfish/core/spots/DetectPixels/_base.py' 2024-11-14T20:11:13,275 adding 'starfish/core/spots/DetectPixels/combine_adjacent_features.py' 2024-11-14T20:11:13,277 adding 'starfish/core/spots/DetectPixels/pixel_spot_decoder.py' 2024-11-14T20:11:13,278 adding 'starfish/core/spots/DetectPixels/test/__init__.py' 2024-11-14T20:11:13,280 adding 'starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py' 2024-11-14T20:11:13,281 adding 'starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py' 2024-11-14T20:11:13,282 adding 'starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py' 2024-11-14T20:11:13,284 adding 'starfish/core/spots/DetectPixels/test/test_targets_map.py' 2024-11-14T20:11:13,286 adding 'starfish/core/spots/FindSpots/__init__.py' 2024-11-14T20:11:13,287 adding 'starfish/core/spots/FindSpots/_base.py' 2024-11-14T20:11:13,289 adding 'starfish/core/spots/FindSpots/blob.py' 2024-11-14T20:11:13,291 adding 'starfish/core/spots/FindSpots/local_max_peak_finder.py' 2024-11-14T20:11:13,293 adding 'starfish/core/spots/FindSpots/spot_finding_utils.py' 2024-11-14T20:11:13,294 adding 'starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py' 2024-11-14T20:11:13,296 adding 'starfish/core/spots/FindSpots/test/__init__.py' 2024-11-14T20:11:13,297 adding 'starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py' 2024-11-14T20:11:13,299 adding 'starfish/core/spots/FindSpots/test/test_spot_detection.py' 2024-11-14T20:11:13,300 adding 'starfish/core/spots/FindSpots/test/test_synthetic_data.py' 2024-11-14T20:11:13,302 adding 'starfish/core/test/__init__.py' 2024-11-14T20:11:13,304 adding 'starfish/core/test/factories.py' 2024-11-14T20:11:13,305 adding 'starfish/core/test/test_display.py' 2024-11-14T20:11:13,307 adding 'starfish/core/test/test_multiprocessing_workflow.py' 2024-11-14T20:11:13,308 adding 'starfish/core/test/test_synthetic_spot_creation.py' 2024-11-14T20:11:13,310 adding 'starfish/core/types/__init__.py' 2024-11-14T20:11:13,311 adding 'starfish/core/types/_constants.py' 2024-11-14T20:11:13,313 adding 'starfish/core/types/_decoded_spots.py' 2024-11-14T20:11:13,314 adding 'starfish/core/types/_functionsource.py' 2024-11-14T20:11:13,315 adding 'starfish/core/types/_spot_attributes.py' 2024-11-14T20:11:13,317 adding 'starfish/core/types/_spot_finding_results.py' 2024-11-14T20:11:13,318 adding 'starfish/core/types/_validated_table.py' 2024-11-14T20:11:13,320 adding 'starfish/core/types/test/__init__.py' 2024-11-14T20:11:13,321 adding 'starfish/core/types/test/test_decoded_spots.py' 2024-11-14T20:11:13,323 adding 'starfish/core/types/test/test_saving_spots.py' 2024-11-14T20:11:13,325 adding 'starfish/core/util/__init__.py' 2024-11-14T20:11:13,326 adding 'starfish/core/util/argparse.py' 2024-11-14T20:11:13,327 adding 'starfish/core/util/clock.py' 2024-11-14T20:11:13,328 adding 'starfish/core/util/config.py' 2024-11-14T20:11:13,329 adding 'starfish/core/util/enum.py' 2024-11-14T20:11:13,331 adding 'starfish/core/util/exec.py' 2024-11-14T20:11:13,332 adding 'starfish/core/util/levels.py' 2024-11-14T20:11:13,333 adding 'starfish/core/util/logging.py' 2024-11-14T20:11:13,335 adding 'starfish/core/util/try_import.py' 2024-11-14T20:11:13,337 adding 'starfish/core/util/click/__init__.py' 2024-11-14T20:11:13,338 adding 'starfish/core/util/test/__init__.py' 2024-11-14T20:11:13,340 adding 'starfish/core/util/test/test_levels.py' 2024-11-14T20:11:13,341 adding 'starfish/core/util/test/test_preserve_float_range.py' 2024-11-14T20:11:13,343 adding 'starfish/experiment/__init__.py' 2024-11-14T20:11:13,344 adding 'starfish/experiment/builder.py' 2024-11-14T20:11:13,347 adding 'starfish/spacetx_format/examples/codebook/codebook.json' 2024-11-14T20:11:13,348 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal.json' 2024-11-14T20:11:13,349 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json' 2024-11-14T20:11:13,350 adding 'starfish/spacetx_format/examples/experiment/dartfish_experiment.json' 2024-11-14T20:11:13,352 adding 'starfish/spacetx_format/examples/experiment/experiment.json' 2024-11-14T20:11:13,353 adding 'starfish/spacetx_format/examples/experiment/no_fov_manifest.json' 2024-11-14T20:11:13,354 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json' 2024-11-14T20:11:13,356 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json' 2024-11-14T20:11:13,357 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json' 2024-11-14T20:11:13,358 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json' 2024-11-14T20:11:13,359 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json' 2024-11-14T20:11:13,360 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json' 2024-11-14T20:11:13,361 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json' 2024-11-14T20:11:13,362 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json' 2024-11-14T20:11:13,364 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json' 2024-11-14T20:11:13,366 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json' 2024-11-14T20:11:13,367 adding 'starfish/spacetx_format/examples/field_of_view/field_of_view.json' 2024-11-14T20:11:13,368 adding 'starfish/spacetx_format/examples/field_of_view/too_large.json' 2024-11-14T20:11:13,370 adding 'starfish/spacetx_format/examples/fov_manifest/fov_manifest.json' 2024-11-14T20:11:13,372 adding 'starfish/spacetx_format/schema/experiment_4.0.0.json' 2024-11-14T20:11:13,373 adding 'starfish/spacetx_format/schema/experiment_5.0.0.json' 2024-11-14T20:11:13,374 adding 'starfish/spacetx_format/schema/extras.json' 2024-11-14T20:11:13,375 adding 'starfish/spacetx_format/schema/fov_manifest_0.0.0.json' 2024-11-14T20:11:13,376 adding 'starfish/spacetx_format/schema/fov_manifest_0.1.0.json' 2024-11-14T20:11:13,378 adding 'starfish/spacetx_format/schema/version.json' 2024-11-14T20:11:13,379 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codebook.json' 2024-11-14T20:11:13,381 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codeword.json' 2024-11-14T20:11:13,382 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json' 2024-11-14T20:11:13,384 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json' 2024-11-14T20:11:13,385 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json' 2024-11-14T20:11:13,387 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json' 2024-11-14T20:11:13,388 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json' 2024-11-14T20:11:13,390 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json' 2024-11-14T20:11:13,391 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json' 2024-11-14T20:11:13,393 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json' 2024-11-14T20:11:13,394 adding 'starfish/test/__init__.py' 2024-11-14T20:11:13,396 adding 'starfish/test/full_pipelines/__init__.py' 2024-11-14T20:11:13,397 adding 'starfish/test/full_pipelines/api/__init__.py' 2024-11-14T20:11:13,398 adding 'starfish/test/full_pipelines/api/test_allen_smFISH.py' 2024-11-14T20:11:13,400 adding 'starfish/test/full_pipelines/api/test_dartfish.py' 2024-11-14T20:11:13,402 adding 'starfish/test/full_pipelines/api/test_iss_api.py' 2024-11-14T20:11:13,403 adding 'starfish/test/full_pipelines/api/test_iss_doc_pipeline.py' 2024-11-14T20:11:13,405 adding 'starfish/test/full_pipelines/api/test_merfish.py' 2024-11-14T20:11:13,407 adding 'starfish/util/__init__.py' 2024-11-14T20:11:13,408 adding 'starfish/util/plot.py' 2024-11-14T20:11:13,411 adding 'starfish-0.3.1.dist-info/LICENSE' 2024-11-14T20:11:13,412 adding 'starfish-0.3.1.dist-info/METADATA' 2024-11-14T20:11:13,413 adding 'starfish-0.3.1.dist-info/WHEEL' 2024-11-14T20:11:13,414 adding 'starfish-0.3.1.dist-info/entry_points.txt' 2024-11-14T20:11:13,415 adding 'starfish-0.3.1.dist-info/top_level.txt' 2024-11-14T20:11:13,420 adding 'starfish-0.3.1.dist-info/RECORD' 2024-11-14T20:11:13,430 removing build/bdist.linux-armv7l/wheel 2024-11-14T20:11:13,639 Building wheel for starfish (setup.py): finished with status 'done' 2024-11-14T20:11:13,646 Created wheel for starfish: filename=starfish-0.3.1-py3-none-any.whl size=390229 sha256=b2383a8e6b39ba52ccd100522459c0a566869586da2bdb063080ffdfe9058554 2024-11-14T20:11:13,647 Stored in directory: /tmp/pip-ephem-wheel-cache-1pmpk3vf/wheels/9e/77/9f/b76b0cb455d23b698b55b668bc2ef7434eca6dee655843eb56 2024-11-14T20:11:13,668 Successfully built starfish 2024-11-14T20:11:13,685 Removed build tracker: '/tmp/pip-build-tracker-ah3ee_ic'