2024-11-15T05:50:50,450 Created temporary directory: /tmp/pip-build-tracker-ckxp4zq8 2024-11-15T05:50:50,451 Initialized build tracking at /tmp/pip-build-tracker-ckxp4zq8 2024-11-15T05:50:50,451 Created build tracker: /tmp/pip-build-tracker-ckxp4zq8 2024-11-15T05:50:50,452 Entered build tracker: /tmp/pip-build-tracker-ckxp4zq8 2024-11-15T05:50:50,453 Created temporary directory: /tmp/pip-wheel-thpsrux3 2024-11-15T05:50:50,457 Created temporary directory: /tmp/pip-ephem-wheel-cache-eggpthj3 2024-11-15T05:50:50,501 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-15T05:50:50,504 2 location(s) to search for versions of homi-pipeline: 2024-11-15T05:50:50,504 * https://pypi.org/simple/homi-pipeline/ 2024-11-15T05:50:50,504 * https://www.piwheels.org/simple/homi-pipeline/ 2024-11-15T05:50:50,505 Fetching project page and analyzing links: https://pypi.org/simple/homi-pipeline/ 2024-11-15T05:50:50,505 Getting page https://pypi.org/simple/homi-pipeline/ 2024-11-15T05:50:50,507 Found index url https://pypi.org/simple/ 2024-11-15T05:50:50,727 Fetched page https://pypi.org/simple/homi-pipeline/ as application/vnd.pypi.simple.v1+json 2024-11-15T05:50:50,731 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/2b/2f/d7f737bbbcf5acdb21caad36381ddf833f3ae20a98eb9f38a60d630f8b19/HoMi_pipeline-1.0.4-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,732 Found link https://files.pythonhosted.org/packages/56/81/2de14d31804045b5b7a0c582de19188c01a8de5ad3f953841f01aef86419/homi_pipeline-1.0.4.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.4 2024-11-15T05:50:50,733 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/14/73/530144aadf2b945ecb5d635e333dfc6038a5ce1a1ea03a1d54f1cf4a40a5/HoMi_pipeline-1.0.5-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,734 Found link https://files.pythonhosted.org/packages/81/4c/0bfa30002f2c33ff1bb90392ccdf509e1f38a472e5807bc4238fb1842d7c/homi_pipeline-1.0.5.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.5 2024-11-15T05:50:50,734 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/1e/5f/eaa4752e3474d13c00c1e7a1e6e797c898bb925f2b3bcb39fd57474bbf72/HoMi_pipeline-1.0.6-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,735 Found link https://files.pythonhosted.org/packages/96/1c/d8cf18b86b78600bbd4b771fd8c2c1965c2397e162575c65e4e1d081a12e/homi_pipeline-1.0.6.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.6 2024-11-15T05:50:50,736 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/e7/82/b5cf93b605bb58cf43d5086e05573f7b960410768cfd10c9212c884356fe/HoMi_pipeline-1.0.7-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,737 Found link https://files.pythonhosted.org/packages/8c/ce/d1098487cb2f77ab95dab26bd6fdb548572494e84034a9ce6deb2f986b0b/homi_pipeline-1.0.7.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.7 2024-11-15T05:50:50,738 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/67/28/51f5cc23bbf4b5db0b1afb91dc058649b690bf64beaea710305f5014b2c1/HoMi_pipeline-1.0.8-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,739 Found link https://files.pythonhosted.org/packages/58/bf/fa627d33c0c8a77ef1f2bf3ad69560a790a8b2c8cce78041b3723fa24a8d/homi_pipeline-1.0.8.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.8 2024-11-15T05:50:50,739 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/b3/f4/88f0f43ae830bcde620a8013bf0385035eb78e6ae8dd5ef66e9499e417cd/homi_pipeline-1.0.9-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,740 Found link https://files.pythonhosted.org/packages/5e/66/35b815aa9f646b0adaa5a6b98ead6067515c76903ca272eb913d78f2c379/homi_pipeline-1.0.9.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.9 2024-11-15T05:50:50,741 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/31/eb/3763821c57a80520685fcc7c95c3665d5b1060a84b505f7ebadad54a3b7c/homi_pipeline-1.0.10-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,742 Found link https://files.pythonhosted.org/packages/d1/5f/828957918f33fbed6588f625aaf9384a9d7569e21606e2f7560f1249b70e/homi_pipeline-1.0.10.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.10 2024-11-15T05:50:50,743 Skipping link: No binaries permitted for homi-pipeline: https://files.pythonhosted.org/packages/ee/b7/5c8fd935b67baff8e1c27b43911a490ffe7310e210e95e541acb66663f2d/homi_pipeline-1.0.11-py3-none-any.whl (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,743 Found link https://files.pythonhosted.org/packages/77/41/ca735a610bd9f7998c347c3d498e65bef1dabc02f42a217adad1d4cd19dd/homi_pipeline-1.0.11.tar.gz (from https://pypi.org/simple/homi-pipeline/) (requires-python:<3.12.0), version: 1.0.11 2024-11-15T05:50:50,744 Fetching project page and analyzing links: https://www.piwheels.org/simple/homi-pipeline/ 2024-11-15T05:50:50,745 Getting page https://www.piwheels.org/simple/homi-pipeline/ 2024-11-15T05:50:50,746 Found index url https://www.piwheels.org/simple/ 2024-11-15T05:50:50,912 Fetched page https://www.piwheels.org/simple/homi-pipeline/ as text/html 2024-11-15T05:50:50,915 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/homi_pipeline-1.0.10-py3-none-any.whl#sha256=47782d893da5b163f47b447ce6624f07704ace41e7e743841962d5c074b4e366 (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,916 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/homi_pipeline-1.0.9-py3-none-any.whl#sha256=7e6216111167f6a7190da3e0cde77f73360b79a8177fb09035bd1ae650c1e507 (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,917 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/HoMi_pipeline-1.0.8-py3-none-any.whl#sha256=51b4b72a1a7278e9e56e84f3c6747b186a3e4745ad6ab68800b30a50bc914f86 (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,917 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/HoMi_pipeline-1.0.7-py3-none-any.whl#sha256=f0dc342ef3431deb1fe0119908dfaf6639c2172a72f2e024cd0ed49f2835183a (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,918 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/HoMi_pipeline-1.0.6-py3-none-any.whl#sha256=db11d135158a25a6e0c26125df20efe6c4215670508e11b243dc26bde8fa475d (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,919 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/HoMi_pipeline-1.0.5-py3-none-any.whl#sha256=e3d12dbe9433bef87e816014c345a09af2f99a91d543497606b0105bf3c73421 (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,919 Skipping link: No binaries permitted for homi-pipeline: https://www.piwheels.org/simple/homi-pipeline/HoMi_pipeline-1.0.4-py3-none-any.whl#sha256=a28da3efa0ab27e400f13a9e67038b54c72121a15fcebb90b87e2520fb85756f (from https://www.piwheels.org/simple/homi-pipeline/) (requires-python:<3.12.0) 2024-11-15T05:50:50,920 Skipping link: not a file: https://www.piwheels.org/simple/homi-pipeline/ 2024-11-15T05:50:50,921 Skipping link: not a file: https://pypi.org/simple/homi-pipeline/ 2024-11-15T05:50:50,940 Given no hashes to check 1 links for project 'homi-pipeline': discarding no candidates 2024-11-15T05:50:50,942 Collecting homi-pipeline==1.0.11 2024-11-15T05:50:50,944 Created temporary directory: /tmp/pip-unpack-8cj32vmw 2024-11-15T05:50:51,164 Downloading homi_pipeline-1.0.11.tar.gz (50 kB) 2024-11-15T05:50:51,307 Added homi-pipeline==1.0.11 from https://files.pythonhosted.org/packages/77/41/ca735a610bd9f7998c347c3d498e65bef1dabc02f42a217adad1d4cd19dd/homi_pipeline-1.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-ckxp4zq8' 2024-11-15T05:50:51,309 Running setup.py (path:/tmp/pip-wheel-thpsrux3/homi-pipeline_38920324d7cd4d1e9891943d916c5c93/setup.py) egg_info for package homi-pipeline 2024-11-15T05:50:51,310 Created temporary directory: /tmp/pip-pip-egg-info-mi358nfl 2024-11-15T05:50:51,310 Preparing metadata (setup.py): started 2024-11-15T05:50:51,311 Running command python setup.py egg_info 2024-11-15T05:50:52,042 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-11-15T05:50:52,043 !! 2024-11-15T05:50:52,044 ******************************************************************************** 2024-11-15T05:50:52,044 Requirements should be satisfied by a PEP 517 installer. 2024-11-15T05:50:52,045 If you are using pip, you can try `pip install --use-pep517`. 2024-11-15T05:50:52,045 ******************************************************************************** 2024-11-15T05:50:52,046 !! 2024-11-15T05:50:52,047 dist.fetch_build_eggs(dist.setup_requires) 2024-11-15T05:50:55,040 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' 2024-11-15T05:50:55,041 warnings.warn(msg) 2024-11-15T05:50:55,136 running egg_info 2024-11-15T05:50:55,165 creating /tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info 2024-11-15T05:50:55,166 writing /tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/PKG-INFO 2024-11-15T05:50:55,170 writing dependency_links to /tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/dependency_links.txt 2024-11-15T05:50:55,172 writing requirements to /tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/requires.txt 2024-11-15T05:50:55,173 writing top-level names to /tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/top_level.txt 2024-11-15T05:50:55,174 writing manifest file '/tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/SOURCES.txt' 2024-11-15T05:50:55,303 reading manifest file '/tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/SOURCES.txt' 2024-11-15T05:50:55,304 adding license file 'LICENSE' 2024-11-15T05:50:55,308 writing manifest file '/tmp/pip-pip-egg-info-mi358nfl/homi_pipeline.egg-info/SOURCES.txt' 2024-11-15T05:50:55,419 Preparing metadata (setup.py): finished with status 'done' 2024-11-15T05:50:55,423 Source in /tmp/pip-wheel-thpsrux3/homi-pipeline_38920324d7cd4d1e9891943d916c5c93 has version 1.0.11, which satisfies requirement homi-pipeline==1.0.11 from https://files.pythonhosted.org/packages/77/41/ca735a610bd9f7998c347c3d498e65bef1dabc02f42a217adad1d4cd19dd/homi_pipeline-1.0.11.tar.gz 2024-11-15T05:50:55,424 Removed homi-pipeline==1.0.11 from https://files.pythonhosted.org/packages/77/41/ca735a610bd9f7998c347c3d498e65bef1dabc02f42a217adad1d4cd19dd/homi_pipeline-1.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-ckxp4zq8' 2024-11-15T05:50:55,431 Created temporary directory: /tmp/pip-unpack-l03oig1x 2024-11-15T05:50:55,432 Created temporary directory: /tmp/pip-unpack-cy882w6a 2024-11-15T05:50:55,433 Building wheels for collected packages: homi-pipeline 2024-11-15T05:50:55,437 Created temporary directory: /tmp/pip-wheel-c5kd1e2i 2024-11-15T05:50:55,438 Building wheel for homi-pipeline (setup.py): started 2024-11-15T05:50:55,439 Destination directory: /tmp/pip-wheel-c5kd1e2i 2024-11-15T05:50:55,440 Running command python setup.py bdist_wheel 2024-11-15T05:50:56,156 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-11-15T05:50:56,156 !! 2024-11-15T05:50:56,157 ******************************************************************************** 2024-11-15T05:50:56,157 Requirements should be satisfied by a PEP 517 installer. 2024-11-15T05:50:56,158 If you are using pip, you can try `pip install --use-pep517`. 2024-11-15T05:50:56,158 ******************************************************************************** 2024-11-15T05:50:56,159 !! 2024-11-15T05:50:56,160 dist.fetch_build_eggs(dist.setup_requires) 2024-11-15T05:50:56,368 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' 2024-11-15T05:50:56,368 warnings.warn(msg) 2024-11-15T05:50:56,655 running bdist_wheel 2024-11-15T05:50:56,796 running build 2024-11-15T05:50:56,796 running build_py 2024-11-15T05:50:56,828 creating build/lib/homi_pipeline 2024-11-15T05:50:56,830 copying src/homi_pipeline/snake_utils.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,840 copying src/homi_pipeline/__init__.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,842 copying src/homi_pipeline/HoMi.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,845 copying src/homi_pipeline/HoMi_cleanup.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,847 copying src/homi_pipeline/profile_setup.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,849 copying src/homi_pipeline/check_config.py -> build/lib/homi_pipeline 2024-11-15T05:50:56,851 running egg_info 2024-11-15T05:50:56,879 writing src/homi_pipeline.egg-info/PKG-INFO 2024-11-15T05:50:56,883 writing dependency_links to src/homi_pipeline.egg-info/dependency_links.txt 2024-11-15T05:50:56,885 writing requirements to src/homi_pipeline.egg-info/requires.txt 2024-11-15T05:50:56,886 writing top-level names to src/homi_pipeline.egg-info/top_level.txt 2024-11-15T05:50:56,922 reading manifest file 'src/homi_pipeline.egg-info/SOURCES.txt' 2024-11-15T05:50:56,926 adding license file 'LICENSE' 2024-11-15T05:50:56,930 writing manifest file 'src/homi_pipeline.egg-info/SOURCES.txt' 2024-11-15T05:50:56,933 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'homi_pipeline.conda_envs' is absent from the `packages` configuration. 2024-11-15T05:50:56,933 !! 2024-11-15T05:50:56,934 ******************************************************************************** 2024-11-15T05:50:56,935 ############################ 2024-11-15T05:50:56,936 # Package would be ignored # 2024-11-15T05:50:56,937 ############################ 2024-11-15T05:50:56,937 Python recognizes 'homi_pipeline.conda_envs' as an importable package[^1], 2024-11-15T05:50:56,938 but it is absent from setuptools' `packages` configuration. 2024-11-15T05:50:56,939 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-15T05:50:56,939 package, please make sure that 'homi_pipeline.conda_envs' is explicitly added 2024-11-15T05:50:56,940 to the `packages` configuration field. 2024-11-15T05:50:56,941 Alternatively, you can also rely on setuptools' discovery methods 2024-11-15T05:50:56,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-15T05:50:56,942 instead of `find_packages(...)`/`find:`). 2024-11-15T05:50:56,943 You can read more about "package discovery" on setuptools documentation page: 2024-11-15T05:50:56,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-15T05:50:56,945 If you don't want 'homi_pipeline.conda_envs' to be distributed and are 2024-11-15T05:50:56,946 already explicitly excluding 'homi_pipeline.conda_envs' via 2024-11-15T05:50:56,947 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-15T05:50:56,947 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-15T05:50:56,947 combination with a more fine grained `package-data` configuration. 2024-11-15T05:50:56,948 You can read more about "package data files" on setuptools documentation page: 2024-11-15T05:50:56,949 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-15T05:50:56,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-15T05:50:56,951 even if it does not contain any `.py` files. 2024-11-15T05:50:56,951 On the other hand, currently there is no concept of package data 2024-11-15T05:50:56,952 directory, all directories are treated like packages. 2024-11-15T05:50:56,952 ******************************************************************************** 2024-11-15T05:50:56,953 !! 2024-11-15T05:50:56,953 check.warn(importable) 2024-11-15T05:50:56,954 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'homi_pipeline.data' is absent from the `packages` configuration. 2024-11-15T05:50:56,955 !! 2024-11-15T05:50:56,955 ******************************************************************************** 2024-11-15T05:50:56,956 ############################ 2024-11-15T05:50:56,957 # Package would be ignored # 2024-11-15T05:50:56,957 ############################ 2024-11-15T05:50:56,957 Python recognizes 'homi_pipeline.data' as an importable package[^1], 2024-11-15T05:50:56,958 but it is absent from setuptools' `packages` configuration. 2024-11-15T05:50:56,959 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-15T05:50:56,960 package, please make sure that 'homi_pipeline.data' is explicitly added 2024-11-15T05:50:56,960 to the `packages` configuration field. 2024-11-15T05:50:56,961 Alternatively, you can also rely on setuptools' discovery methods 2024-11-15T05:50:56,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-15T05:50:56,962 instead of `find_packages(...)`/`find:`). 2024-11-15T05:50:56,963 You can read more about "package discovery" on setuptools documentation page: 2024-11-15T05:50:56,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-15T05:50:56,965 If you don't want 'homi_pipeline.data' to be distributed and are 2024-11-15T05:50:56,965 already explicitly excluding 'homi_pipeline.data' via 2024-11-15T05:50:56,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-15T05:50:56,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-15T05:50:56,967 combination with a more fine grained `package-data` configuration. 2024-11-15T05:50:56,968 You can read more about "package data files" on setuptools documentation page: 2024-11-15T05:50:56,969 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-15T05:50:56,971 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-15T05:50:56,971 even if it does not contain any `.py` files. 2024-11-15T05:50:56,972 On the other hand, currently there is no concept of package data 2024-11-15T05:50:56,972 directory, all directories are treated like packages. 2024-11-15T05:50:56,973 ******************************************************************************** 2024-11-15T05:50:56,974 !! 2024-11-15T05:50:56,974 check.warn(importable) 2024-11-15T05:50:56,975 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'homi_pipeline.rule_utils' is absent from the `packages` configuration. 2024-11-15T05:50:56,975 !! 2024-11-15T05:50:56,977 ******************************************************************************** 2024-11-15T05:50:56,977 ############################ 2024-11-15T05:50:56,978 # Package would be ignored # 2024-11-15T05:50:56,978 ############################ 2024-11-15T05:50:56,979 Python recognizes 'homi_pipeline.rule_utils' as an importable package[^1], 2024-11-15T05:50:56,979 but it is absent from setuptools' `packages` configuration. 2024-11-15T05:50:56,980 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-15T05:50:56,981 package, please make sure that 'homi_pipeline.rule_utils' is explicitly added 2024-11-15T05:50:56,981 to the `packages` configuration field. 2024-11-15T05:50:56,982 Alternatively, you can also rely on setuptools' discovery methods 2024-11-15T05:50:56,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-15T05:50:56,983 instead of `find_packages(...)`/`find:`). 2024-11-15T05:50:56,984 You can read more about "package discovery" on setuptools documentation page: 2024-11-15T05:50:56,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-15T05:50:56,986 If you don't want 'homi_pipeline.rule_utils' to be distributed and are 2024-11-15T05:50:56,987 already explicitly excluding 'homi_pipeline.rule_utils' via 2024-11-15T05:50:56,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-15T05:50:56,988 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-15T05:50:56,988 combination with a more fine grained `package-data` configuration. 2024-11-15T05:50:56,989 You can read more about "package data files" on setuptools documentation page: 2024-11-15T05:50:56,991 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-15T05:50:56,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-15T05:50:56,993 even if it does not contain any `.py` files. 2024-11-15T05:50:56,994 On the other hand, currently there is no concept of package data 2024-11-15T05:50:56,994 directory, all directories are treated like packages. 2024-11-15T05:50:56,995 ******************************************************************************** 2024-11-15T05:50:56,996 !! 2024-11-15T05:50:56,996 check.warn(importable) 2024-11-15T05:50:56,997 copying src/homi_pipeline/snakefile -> build/lib/homi_pipeline 2024-11-15T05:50:56,997 creating build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:56,998 copying src/homi_pipeline/conda_envs/bbmap.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:56,998 copying src/homi_pipeline/conda_envs/fastqc.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:56,999 copying src/homi_pipeline/conda_envs/featureCounts.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,000 copying src/homi_pipeline/conda_envs/hisat2.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,000 copying src/homi_pipeline/conda_envs/hostile.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,001 copying src/homi_pipeline/conda_envs/humann.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,001 copying src/homi_pipeline/conda_envs/kraken.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,002 copying src/homi_pipeline/conda_envs/nonpareil.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,002 copying src/homi_pipeline/conda_envs/r_env.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,003 copying src/homi_pipeline/conda_envs/seqtk.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,003 copying src/homi_pipeline/conda_envs/trimmomatic.yaml -> build/lib/homi_pipeline/conda_envs 2024-11-15T05:50:57,005 creating build/lib/homi_pipeline/data 2024-11-15T05:50:57,005 copying src/homi_pipeline/data/adapters.fa -> build/lib/homi_pipeline/data 2024-11-15T05:50:57,005 creating build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,006 copying src/homi_pipeline/rule_utils/Gut_metabolic_modules.Rmd -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,006 copying src/homi_pipeline/rule_utils/HUMAnN_microshades.Rmd -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,006 copying src/homi_pipeline/rule_utils/HUMAnN_to_phyloseq_helper.R -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,007 copying src/homi_pipeline/rule_utils/Kraken_microshades.Rmd -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,007 copying src/homi_pipeline/rule_utils/Metaphlan_microshades.Rmd -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,008 copying src/homi_pipeline/rule_utils/R_packages.R -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,008 copying src/homi_pipeline/rule_utils/aggregate_metaphlan_bugslists.py -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,009 copying src/homi_pipeline/rule_utils/bracken_to_phyloseq_helper.R -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,009 copying src/homi_pipeline/rule_utils/combine_kreports.py -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,010 copying src/homi_pipeline/rule_utils/convert_mphlan_v4_to_v3.py -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,011 copying src/homi_pipeline/rule_utils/counts_to_tpm.py -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,014 copying src/homi_pipeline/rule_utils/metaphlan_to_phyloseq_helper.R -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,016 copying src/homi_pipeline/rule_utils/nonpareil_curves.Rmd -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,018 copying src/homi_pipeline/rule_utils/read_reports.py -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,021 copying src/homi_pipeline/rule_utils/sam2bam.sh -> build/lib/homi_pipeline/rule_utils 2024-11-15T05:50:57,023 running build_scripts 2024-11-15T05:50:57,024 creating build/scripts-3.11 2024-11-15T05:50:57,025 copying and adjusting src/homi_pipeline/HoMi.py -> build/scripts-3.11 2024-11-15T05:50:57,028 copying src/homi_pipeline/snake_utils.py -> build/scripts-3.11 2024-11-15T05:50:57,031 copying and adjusting src/homi_pipeline/HoMi_cleanup.py -> build/scripts-3.11 2024-11-15T05:50:57,032 copying and adjusting src/homi_pipeline/profile_setup.py -> build/scripts-3.11 2024-11-15T05:50:57,034 copying and adjusting src/homi_pipeline/check_config.py -> build/scripts-3.11 2024-11-15T05:50:57,036 copying and adjusting src/homi_pipeline/rule_utils/combine_kreports.py -> build/scripts-3.11 2024-11-15T05:50:57,038 copying and adjusting src/homi_pipeline/rule_utils/aggregate_metaphlan_bugslists.py -> build/scripts-3.11 2024-11-15T05:50:57,040 copying and adjusting src/homi_pipeline/rule_utils/convert_mphlan_v4_to_v3.py -> build/scripts-3.11 2024-11-15T05:50:57,042 copying and adjusting src/homi_pipeline/rule_utils/counts_to_tpm.py -> build/scripts-3.11 2024-11-15T05:50:57,043 copying and adjusting src/homi_pipeline/rule_utils/read_reports.py -> build/scripts-3.11 2024-11-15T05:50:57,045 changing mode of build/scripts-3.11/HoMi.py from 644 to 755 2024-11-15T05:50:57,045 changing mode of build/scripts-3.11/snake_utils.py from 644 to 755 2024-11-15T05:50:57,046 changing mode of build/scripts-3.11/HoMi_cleanup.py from 644 to 755 2024-11-15T05:50:57,047 changing mode of build/scripts-3.11/profile_setup.py from 644 to 755 2024-11-15T05:50:57,047 changing mode of build/scripts-3.11/check_config.py from 644 to 755 2024-11-15T05:50:57,048 changing mode of build/scripts-3.11/combine_kreports.py from 644 to 755 2024-11-15T05:50:57,048 changing mode of build/scripts-3.11/aggregate_metaphlan_bugslists.py from 644 to 755 2024-11-15T05:50:57,049 changing mode of build/scripts-3.11/convert_mphlan_v4_to_v3.py from 644 to 755 2024-11-15T05:50:57,050 changing mode of build/scripts-3.11/counts_to_tpm.py from 644 to 755 2024-11-15T05:50:57,050 changing mode of build/scripts-3.11/read_reports.py from 644 to 755 2024-11-15T05:50:57,080 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-15T05:50:57,081 !! 2024-11-15T05:50:57,081 ******************************************************************************** 2024-11-15T05:50:57,082 Please avoid running ``setup.py`` directly. 2024-11-15T05:50:57,082 Instead, use pypa/build, pypa/installer or other 2024-11-15T05:50:57,083 standards-based tools. 2024-11-15T05:50:57,084 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-15T05:50:57,085 ******************************************************************************** 2024-11-15T05:50:57,086 !! 2024-11-15T05:50:57,086 self.initialize_options() 2024-11-15T05:50:57,109 installing to build/bdist.linux-armv7l/wheel 2024-11-15T05:50:57,110 running install 2024-11-15T05:50:57,134 running install_lib 2024-11-15T05:50:57,163 creating build/bdist.linux-armv7l/wheel 2024-11-15T05:50:57,165 creating build/bdist.linux-armv7l/wheel/homi_pipeline 2024-11-15T05:50:57,167 creating build/bdist.linux-armv7l/wheel/homi_pipeline/conda_envs 2024-11-15T05:50:57,169 copying build/lib/homi_pipeline/conda_envs/kraken.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,170 copying build/lib/homi_pipeline/conda_envs/hisat2.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,172 copying build/lib/homi_pipeline/conda_envs/featureCounts.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,174 copying build/lib/homi_pipeline/conda_envs/r_env.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,176 copying build/lib/homi_pipeline/conda_envs/fastqc.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,177 copying build/lib/homi_pipeline/conda_envs/trimmomatic.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,179 copying build/lib/homi_pipeline/conda_envs/nonpareil.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,181 copying build/lib/homi_pipeline/conda_envs/bbmap.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,183 copying build/lib/homi_pipeline/conda_envs/humann.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,185 copying build/lib/homi_pipeline/conda_envs/seqtk.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,186 copying build/lib/homi_pipeline/conda_envs/hostile.yaml -> build/bdist.linux-armv7l/wheel/./homi_pipeline/conda_envs 2024-11-15T05:50:57,188 copying build/lib/homi_pipeline/snake_utils.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,191 copying build/lib/homi_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,192 copying build/lib/homi_pipeline/HoMi.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,195 copying build/lib/homi_pipeline/snakefile -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,198 copying build/lib/homi_pipeline/HoMi_cleanup.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,201 creating build/bdist.linux-armv7l/wheel/homi_pipeline/rule_utils 2024-11-15T05:50:57,202 copying build/lib/homi_pipeline/rule_utils/R_packages.R -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,204 copying build/lib/homi_pipeline/rule_utils/HUMAnN_to_phyloseq_helper.R -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,206 copying build/lib/homi_pipeline/rule_utils/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,207 copying build/lib/homi_pipeline/rule_utils/sam2bam.sh -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,209 copying build/lib/homi_pipeline/rule_utils/aggregate_metaphlan_bugslists.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,211 copying build/lib/homi_pipeline/rule_utils/metaphlan_to_phyloseq_helper.R -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,213 copying build/lib/homi_pipeline/rule_utils/Gut_metabolic_modules.Rmd -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,215 copying build/lib/homi_pipeline/rule_utils/read_reports.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,217 copying build/lib/homi_pipeline/rule_utils/convert_mphlan_v4_to_v3.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,219 copying build/lib/homi_pipeline/rule_utils/combine_kreports.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,221 copying build/lib/homi_pipeline/rule_utils/Kraken_microshades.Rmd -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,224 copying build/lib/homi_pipeline/rule_utils/nonpareil_curves.Rmd -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,225 copying build/lib/homi_pipeline/rule_utils/bracken_to_phyloseq_helper.R -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,227 copying build/lib/homi_pipeline/rule_utils/Metaphlan_microshades.Rmd -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,229 copying build/lib/homi_pipeline/rule_utils/HUMAnN_microshades.Rmd -> build/bdist.linux-armv7l/wheel/./homi_pipeline/rule_utils 2024-11-15T05:50:57,232 copying build/lib/homi_pipeline/profile_setup.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,234 creating build/bdist.linux-armv7l/wheel/homi_pipeline/data 2024-11-15T05:50:57,235 copying build/lib/homi_pipeline/data/adapters.fa -> build/bdist.linux-armv7l/wheel/./homi_pipeline/data 2024-11-15T05:50:57,238 copying build/lib/homi_pipeline/check_config.py -> build/bdist.linux-armv7l/wheel/./homi_pipeline 2024-11-15T05:50:57,241 running install_egg_info 2024-11-15T05:50:57,271 Copying src/homi_pipeline.egg-info to build/bdist.linux-armv7l/wheel/./homi_pipeline-1.0.11-py3.11.egg-info 2024-11-15T05:50:57,282 running install_scripts 2024-11-15T05:50:57,283 creating build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,285 copying build/scripts-3.11/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,287 copying build/scripts-3.11/snake_utils.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,289 copying build/scripts-3.11/aggregate_metaphlan_bugslists.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,291 copying build/scripts-3.11/HoMi.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,293 copying build/scripts-3.11/HoMi_cleanup.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,295 copying build/scripts-3.11/read_reports.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,297 copying build/scripts-3.11/convert_mphlan_v4_to_v3.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,299 copying build/scripts-3.11/combine_kreports.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,302 copying build/scripts-3.11/profile_setup.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,304 copying build/scripts-3.11/check_config.py -> build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts 2024-11-15T05:50:57,306 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/counts_to_tpm.py to 755 2024-11-15T05:50:57,307 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/snake_utils.py to 755 2024-11-15T05:50:57,307 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/aggregate_metaphlan_bugslists.py to 755 2024-11-15T05:50:57,308 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/HoMi.py to 755 2024-11-15T05:50:57,308 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/HoMi_cleanup.py to 755 2024-11-15T05:50:57,309 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/read_reports.py to 755 2024-11-15T05:50:57,309 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/convert_mphlan_v4_to_v3.py to 755 2024-11-15T05:50:57,310 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/combine_kreports.py to 755 2024-11-15T05:50:57,310 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/profile_setup.py to 755 2024-11-15T05:50:57,310 changing mode of build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.data/scripts/check_config.py to 755 2024-11-15T05:50:57,325 creating build/bdist.linux-armv7l/wheel/homi_pipeline-1.0.11.dist-info/WHEEL 2024-11-15T05:50:57,328 creating '/tmp/pip-wheel-c5kd1e2i/homi_pipeline-1.0.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-15T05:50:57,330 adding 'homi_pipeline/HoMi.py' 2024-11-15T05:50:57,332 adding 'homi_pipeline/HoMi_cleanup.py' 2024-11-15T05:50:57,333 adding 'homi_pipeline/__init__.py' 2024-11-15T05:50:57,334 adding 'homi_pipeline/check_config.py' 2024-11-15T05:50:57,336 adding 'homi_pipeline/profile_setup.py' 2024-11-15T05:50:57,338 adding 'homi_pipeline/snake_utils.py' 2024-11-15T05:50:57,343 adding 'homi_pipeline/snakefile' 2024-11-15T05:50:57,345 adding 'homi_pipeline/conda_envs/bbmap.yaml' 2024-11-15T05:50:57,346 adding 'homi_pipeline/conda_envs/fastqc.yaml' 2024-11-15T05:50:57,348 adding 'homi_pipeline/conda_envs/featureCounts.yaml' 2024-11-15T05:50:57,349 adding 'homi_pipeline/conda_envs/hisat2.yaml' 2024-11-15T05:50:57,350 adding 'homi_pipeline/conda_envs/hostile.yaml' 2024-11-15T05:50:57,351 adding 'homi_pipeline/conda_envs/humann.yaml' 2024-11-15T05:50:57,353 adding 'homi_pipeline/conda_envs/kraken.yaml' 2024-11-15T05:50:57,354 adding 'homi_pipeline/conda_envs/nonpareil.yaml' 2024-11-15T05:50:57,355 adding 'homi_pipeline/conda_envs/r_env.yaml' 2024-11-15T05:50:57,356 adding 'homi_pipeline/conda_envs/seqtk.yaml' 2024-11-15T05:50:57,357 adding 'homi_pipeline/conda_envs/trimmomatic.yaml' 2024-11-15T05:50:57,359 adding 'homi_pipeline/data/adapters.fa' 2024-11-15T05:50:57,362 adding 'homi_pipeline/rule_utils/Gut_metabolic_modules.Rmd' 2024-11-15T05:50:57,363 adding 'homi_pipeline/rule_utils/HUMAnN_microshades.Rmd' 2024-11-15T05:50:57,365 adding 'homi_pipeline/rule_utils/HUMAnN_to_phyloseq_helper.R' 2024-11-15T05:50:57,367 adding 'homi_pipeline/rule_utils/Kraken_microshades.Rmd' 2024-11-15T05:50:57,368 adding 'homi_pipeline/rule_utils/Metaphlan_microshades.Rmd' 2024-11-15T05:50:57,370 adding 'homi_pipeline/rule_utils/R_packages.R' 2024-11-15T05:50:57,371 adding 'homi_pipeline/rule_utils/aggregate_metaphlan_bugslists.py' 2024-11-15T05:50:57,372 adding 'homi_pipeline/rule_utils/bracken_to_phyloseq_helper.R' 2024-11-15T05:50:57,375 adding 'homi_pipeline/rule_utils/combine_kreports.py' 2024-11-15T05:50:57,376 adding 'homi_pipeline/rule_utils/convert_mphlan_v4_to_v3.py' 2024-11-15T05:50:57,377 adding 'homi_pipeline/rule_utils/counts_to_tpm.py' 2024-11-15T05:50:57,379 adding 'homi_pipeline/rule_utils/metaphlan_to_phyloseq_helper.R' 2024-11-15T05:50:57,380 adding 'homi_pipeline/rule_utils/nonpareil_curves.Rmd' 2024-11-15T05:50:57,382 adding 'homi_pipeline/rule_utils/read_reports.py' 2024-11-15T05:50:57,383 adding 'homi_pipeline/rule_utils/sam2bam.sh' 2024-11-15T05:50:57,385 adding 'homi_pipeline-1.0.11.data/scripts/HoMi.py' 2024-11-15T05:50:57,386 adding 'homi_pipeline-1.0.11.data/scripts/HoMi_cleanup.py' 2024-11-15T05:50:57,388 adding 'homi_pipeline-1.0.11.data/scripts/aggregate_metaphlan_bugslists.py' 2024-11-15T05:50:57,389 adding 'homi_pipeline-1.0.11.data/scripts/check_config.py' 2024-11-15T05:50:57,391 adding 'homi_pipeline-1.0.11.data/scripts/combine_kreports.py' 2024-11-15T05:50:57,392 adding 'homi_pipeline-1.0.11.data/scripts/convert_mphlan_v4_to_v3.py' 2024-11-15T05:50:57,394 adding 'homi_pipeline-1.0.11.data/scripts/counts_to_tpm.py' 2024-11-15T05:50:57,395 adding 'homi_pipeline-1.0.11.data/scripts/profile_setup.py' 2024-11-15T05:50:57,397 adding 'homi_pipeline-1.0.11.data/scripts/read_reports.py' 2024-11-15T05:50:57,398 adding 'homi_pipeline-1.0.11.data/scripts/snake_utils.py' 2024-11-15T05:50:57,402 adding 'homi_pipeline-1.0.11.dist-info/LICENSE' 2024-11-15T05:50:57,403 adding 'homi_pipeline-1.0.11.dist-info/METADATA' 2024-11-15T05:50:57,404 adding 'homi_pipeline-1.0.11.dist-info/WHEEL' 2024-11-15T05:50:57,405 adding 'homi_pipeline-1.0.11.dist-info/top_level.txt' 2024-11-15T05:50:57,406 adding 'homi_pipeline-1.0.11.dist-info/RECORD' 2024-11-15T05:50:57,409 removing build/bdist.linux-armv7l/wheel 2024-11-15T05:50:57,531 Building wheel for homi-pipeline (setup.py): finished with status 'done' 2024-11-15T05:50:57,534 Created wheel for homi-pipeline: filename=homi_pipeline-1.0.11-py3-none-any.whl size=72923 sha256=f38d6f322e26b94c4b6d87ace732c953b2d93a6a5f5004b6cd68d53aeff65eb6 2024-11-15T05:50:57,536 Stored in directory: /tmp/pip-ephem-wheel-cache-eggpthj3/wheels/0b/93/3a/899139b67a141398817af7c1e190707081abb50a4d7a7f8f5c 2024-11-15T05:50:57,547 Successfully built homi-pipeline 2024-11-15T05:50:57,552 Removed build tracker: '/tmp/pip-build-tracker-ckxp4zq8'