2024-11-15T19:53:16,594 Created temporary directory: /tmp/pip-build-tracker-csisdfpt
2024-11-15T19:53:16,596 Initialized build tracking at /tmp/pip-build-tracker-csisdfpt
2024-11-15T19:53:16,596 Created build tracker: /tmp/pip-build-tracker-csisdfpt
2024-11-15T19:53:16,597 Entered build tracker: /tmp/pip-build-tracker-csisdfpt
2024-11-15T19:53:16,597 Created temporary directory: /tmp/pip-wheel-0dyq_477
2024-11-15T19:53:16,601 Created temporary directory: /tmp/pip-ephem-wheel-cache-6vda3pj0
2024-11-15T19:53:16,647 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-15T19:53:16,650 2 location(s) to search for versions of topaz-em:
2024-11-15T19:53:16,650 * https://pypi.org/simple/topaz-em/
2024-11-15T19:53:16,650 * https://www.piwheels.org/simple/topaz-em/
2024-11-15T19:53:16,650 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/
2024-11-15T19:53:16,651 Getting page https://pypi.org/simple/topaz-em/
2024-11-15T19:53:16,653 Found index url https://pypi.org/simple/
2024-11-15T19:53:16,874 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json
2024-11-15T19:53:16,879   Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0
2024-11-15T19:53:16,880   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,880   Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1
2024-11-15T19:53:16,881   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,881   Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2
2024-11-15T19:53:16,882   Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3
2024-11-15T19:53:16,883   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,883   Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4
2024-11-15T19:53:16,884   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,885   Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0
2024-11-15T19:53:16,885   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,886   Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5
2024-11-15T19:53:16,887   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,887   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,888   Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0
2024-11-15T19:53:16,889   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/9c/8d/7720e829913c8b02aa880a0cf34bec0b5c9e7d1af2812a6d237c7539b6d6/topaz_em-0.3.1-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-11-15T19:53:16,889   Found link https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.1
2024-11-15T19:53:16,890 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/
2024-11-15T19:53:16,891 Getting page https://www.piwheels.org/simple/topaz-em/
2024-11-15T19:53:16,892 Found index url https://www.piwheels.org/simple/
2024-11-15T19:53:17,067 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html
2024-11-15T19:53:17,070   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,071   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,071   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,072   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,073   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,073   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,074   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,075   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/)
2024-11-15T19:53:17,076 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/
2024-11-15T19:53:17,076 Skipping link: not a file: https://pypi.org/simple/topaz-em/
2024-11-15T19:53:17,097 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates
2024-11-15T19:53:17,099 Collecting topaz-em==0.3.1
2024-11-15T19:53:17,101   Created temporary directory: /tmp/pip-unpack-jerj7l18
2024-11-15T19:53:17,330   Downloading topaz_em-0.3.1.tar.gz (48.2 MB)
2024-11-15T19:53:27,745   Added topaz-em==0.3.1 from https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-csisdfpt'
2024-11-15T19:53:27,748   Running setup.py (path:/tmp/pip-wheel-0dyq_477/topaz-em_ddb1ffbb1c9647b6889409babb85b906/setup.py) egg_info for package topaz-em
2024-11-15T19:53:27,749   Created temporary directory: /tmp/pip-pip-egg-info-_woerk5x
2024-11-15T19:53:27,749   Preparing metadata (setup.py): started
2024-11-15T19:53:27,750   Running command python setup.py egg_info
2024-11-15T19:53:28,863   running egg_info
2024-11-15T19:53:28,890   creating /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info
2024-11-15T19:53:28,892   writing /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/PKG-INFO
2024-11-15T19:53:28,899   writing dependency_links to /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/dependency_links.txt
2024-11-15T19:53:28,901   writing entry points to /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/entry_points.txt
2024-11-15T19:53:28,903   writing requirements to /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/requires.txt
2024-11-15T19:53:28,904   writing top-level names to /tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/top_level.txt
2024-11-15T19:53:28,905   writing manifest file '/tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/SOURCES.txt'
2024-11-15T19:53:29,003   reading manifest file '/tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/SOURCES.txt'
2024-11-15T19:53:29,005   reading manifest template 'MANIFEST.in'
2024-11-15T19:53:29,008   adding license file 'LICENSE'
2024-11-15T19:53:29,013   writing manifest file '/tmp/pip-pip-egg-info-_woerk5x/topaz_em.egg-info/SOURCES.txt'
2024-11-15T19:53:29,121   Preparing metadata (setup.py): finished with status 'done'
2024-11-15T19:53:29,125   Source in /tmp/pip-wheel-0dyq_477/topaz-em_ddb1ffbb1c9647b6889409babb85b906 has version 0.3.1, which satisfies requirement topaz-em==0.3.1 from https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz
2024-11-15T19:53:29,126   Removed topaz-em==0.3.1 from https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-csisdfpt'
2024-11-15T19:53:29,132 Created temporary directory: /tmp/pip-unpack-btz0z_yr
2024-11-15T19:53:29,133 Created temporary directory: /tmp/pip-unpack-iw8_fzy0
2024-11-15T19:53:29,133 Building wheels for collected packages: topaz-em
2024-11-15T19:53:29,138   Created temporary directory: /tmp/pip-wheel-w5nwdj_z
2024-11-15T19:53:29,139   Building wheel for topaz-em (setup.py): started
2024-11-15T19:53:29,140   Destination directory: /tmp/pip-wheel-w5nwdj_z
2024-11-15T19:53:29,141   Running command python setup.py bdist_wheel
2024-11-15T19:53:30,164   running bdist_wheel
2024-11-15T19:53:30,301   running build
2024-11-15T19:53:30,302   running build_py
2024-11-15T19:53:30,333   creating build/lib/topaz
2024-11-15T19:53:30,335   copying topaz/torch.py -> build/lib/topaz
2024-11-15T19:53:30,337   copying topaz/metrics.py -> build/lib/topaz
2024-11-15T19:53:30,340   copying topaz/extract.py -> build/lib/topaz
2024-11-15T19:53:30,342   copying topaz/cuda.py -> build/lib/topaz
2024-11-15T19:53:30,345   copying topaz/training.py -> build/lib/topaz
2024-11-15T19:53:30,348   copying topaz/stats.py -> build/lib/topaz
2024-11-15T19:53:30,350   copying topaz/predict.py -> build/lib/topaz
2024-11-15T19:53:30,352   copying topaz/mrc.py -> build/lib/topaz
2024-11-15T19:53:30,354   copying topaz/filters.py -> build/lib/topaz
2024-11-15T19:53:30,357   copying topaz/main.py -> build/lib/topaz
2024-11-15T19:53:30,359   copying topaz/algorithms.py -> build/lib/topaz
2024-11-15T19:53:30,361   copying topaz/__init__.py -> build/lib/topaz
2024-11-15T19:53:30,363   copying topaz/_version.py -> build/lib/topaz
2024-11-15T19:53:30,365   copying topaz/methods.py -> build/lib/topaz
2024-11-15T19:53:30,367   copying topaz/denoise.py -> build/lib/topaz
2024-11-15T19:53:30,370   creating build/lib/topaz/denoising
2024-11-15T19:53:30,372   copying topaz/denoising/utils.py -> build/lib/topaz/denoising
2024-11-15T19:53:30,374   copying topaz/denoising/datasets.py -> build/lib/topaz/denoising
2024-11-15T19:53:30,376   copying topaz/denoising/models.py -> build/lib/topaz/denoising
2024-11-15T19:53:30,379   copying topaz/denoising/__init__.py -> build/lib/topaz/denoising
2024-11-15T19:53:30,381   creating build/lib/topaz/model
2024-11-15T19:53:30,382   copying topaz/model/utils.py -> build/lib/topaz/model
2024-11-15T19:53:30,384   copying topaz/model/generative.py -> build/lib/topaz/model
2024-11-15T19:53:30,386   copying topaz/model/classifier.py -> build/lib/topaz/model
2024-11-15T19:53:30,388   copying topaz/model/factory.py -> build/lib/topaz/model
2024-11-15T19:53:30,390   copying topaz/model/__init__.py -> build/lib/topaz/model
2024-11-15T19:53:30,392   creating build/lib/topaz/utils
2024-11-15T19:53:30,393   copying topaz/utils/files.py -> build/lib/topaz/utils
2024-11-15T19:53:30,396   copying topaz/utils/conversions.py -> build/lib/topaz/utils
2024-11-15T19:53:30,398   copying topaz/utils/picks.py -> build/lib/topaz/utils
2024-11-15T19:53:30,400   copying topaz/utils/image.py -> build/lib/topaz/utils
2024-11-15T19:53:30,403   copying topaz/utils/printing.py -> build/lib/topaz/utils
2024-11-15T19:53:30,404   copying topaz/utils/__init__.py -> build/lib/topaz/utils
2024-11-15T19:53:30,406   copying topaz/utils/star.py -> build/lib/topaz/utils
2024-11-15T19:53:30,409   creating build/lib/topaz/commands
2024-11-15T19:53:30,410   copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
2024-11-15T19:53:30,412   copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
2024-11-15T19:53:30,413   copying topaz/commands/segment.py -> build/lib/topaz/commands
2024-11-15T19:53:30,415   copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
2024-11-15T19:53:30,417   copying topaz/commands/gui.py -> build/lib/topaz/commands
2024-11-15T19:53:30,419   copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
2024-11-15T19:53:30,421   copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
2024-11-15T19:53:30,423   copying topaz/commands/preprocess.py -> build/lib/topaz/commands
2024-11-15T19:53:30,425   copying topaz/commands/extract.py -> build/lib/topaz/commands
2024-11-15T19:53:30,427   copying topaz/commands/normalize.py -> build/lib/topaz/commands
2024-11-15T19:53:30,429   copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
2024-11-15T19:53:30,431   copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
2024-11-15T19:53:30,433   copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
2024-11-15T19:53:30,435   copying topaz/commands/split.py -> build/lib/topaz/commands
2024-11-15T19:53:30,437   copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
2024-11-15T19:53:30,438   copying topaz/commands/denoise3d.py -> build/lib/topaz/commands
2024-11-15T19:53:30,441   copying topaz/commands/convert.py -> build/lib/topaz/commands
2024-11-15T19:53:30,443   copying topaz/commands/train.py -> build/lib/topaz/commands
2024-11-15T19:53:30,445   copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
2024-11-15T19:53:30,447   copying topaz/commands/__init__.py -> build/lib/topaz/commands
2024-11-15T19:53:30,449   copying topaz/commands/downsample.py -> build/lib/topaz/commands
2024-11-15T19:53:30,451   copying topaz/commands/denoise.py -> build/lib/topaz/commands
2024-11-15T19:53:30,454   creating build/lib/topaz/transform
2024-11-15T19:53:30,455   copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
2024-11-15T19:53:30,457   copying topaz/transform/__init__.py -> build/lib/topaz/transform
2024-11-15T19:53:30,460   creating build/lib/topaz/model/features
2024-11-15T19:53:30,461   copying topaz/model/features/basic.py -> build/lib/topaz/model/features
2024-11-15T19:53:30,463   copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
2024-11-15T19:53:30,466   copying topaz/model/features/msnet.py -> build/lib/topaz/model/features
2024-11-15T19:53:30,468   copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
2024-11-15T19:53:30,470   copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
2024-11-15T19:53:30,472   creating build/lib/topaz/utils/data
2024-11-15T19:53:30,473   copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,475   copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,478   copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,479   copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,482   copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,484   copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,486   copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
2024-11-15T19:53:30,487   running egg_info
2024-11-15T19:53:30,515   writing topaz_em.egg-info/PKG-INFO
2024-11-15T19:53:30,518   writing dependency_links to topaz_em.egg-info/dependency_links.txt
2024-11-15T19:53:30,520   writing entry points to topaz_em.egg-info/entry_points.txt
2024-11-15T19:53:30,521   writing requirements to topaz_em.egg-info/requires.txt
2024-11-15T19:53:30,522   writing top-level names to topaz_em.egg-info/top_level.txt
2024-11-15T19:53:30,562   reading manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-11-15T19:53:30,568   reading manifest template 'MANIFEST.in'
2024-11-15T19:53:30,571   adding license file 'LICENSE'
2024-11-15T19:53:30,576   writing manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-11-15T19:53:30,579   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration.
2024-11-15T19:53:30,580   !!

2024-11-15T19:53:30,581           ********************************************************************************
2024-11-15T19:53:30,581           ############################
2024-11-15T19:53:30,582           # Package would be ignored #
2024-11-15T19:53:30,583           ############################
2024-11-15T19:53:30,583           Python recognizes 'topaz.gui' as an importable package[^1],
2024-11-15T19:53:30,584           but it is absent from setuptools' `packages` configuration.

2024-11-15T19:53:30,585           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-15T19:53:30,585           package, please make sure that 'topaz.gui' is explicitly added
2024-11-15T19:53:30,586           to the `packages` configuration field.

2024-11-15T19:53:30,587           Alternatively, you can also rely on setuptools' discovery methods
2024-11-15T19:53:30,587           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-15T19:53:30,588           instead of `find_packages(...)`/`find:`).

2024-11-15T19:53:30,589           You can read more about "package discovery" on setuptools documentation page:

2024-11-15T19:53:30,590           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-15T19:53:30,591           If you don't want 'topaz.gui' to be distributed and are
2024-11-15T19:53:30,591           already explicitly excluding 'topaz.gui' via
2024-11-15T19:53:30,593           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-15T19:53:30,598           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-15T19:53:30,598           combination with a more fine grained `package-data` configuration.

2024-11-15T19:53:30,599           You can read more about "package data files" on setuptools documentation page:

2024-11-15T19:53:30,601           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-15T19:53:30,603           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-15T19:53:30,603                 even if it does not contain any `.py` files.
2024-11-15T19:53:30,604                 On the other hand, currently there is no concept of package data
2024-11-15T19:53:30,604                 directory, all directories are treated like packages.
2024-11-15T19:53:30,605           ********************************************************************************

2024-11-15T19:53:30,606   !!
2024-11-15T19:53:30,606     check.warn(importable)
2024-11-15T19:53:30,606   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration.
2024-11-15T19:53:30,607   !!

2024-11-15T19:53:30,608           ********************************************************************************
2024-11-15T19:53:30,608           ############################
2024-11-15T19:53:30,609           # Package would be ignored #
2024-11-15T19:53:30,610           ############################
2024-11-15T19:53:30,610           Python recognizes 'topaz.pretrained.denoise' as an importable package[^1],
2024-11-15T19:53:30,610           but it is absent from setuptools' `packages` configuration.

2024-11-15T19:53:30,611           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-15T19:53:30,612           package, please make sure that 'topaz.pretrained.denoise' is explicitly added
2024-11-15T19:53:30,613           to the `packages` configuration field.

2024-11-15T19:53:30,614           Alternatively, you can also rely on setuptools' discovery methods
2024-11-15T19:53:30,614           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-15T19:53:30,615           instead of `find_packages(...)`/`find:`).

2024-11-15T19:53:30,617           You can read more about "package discovery" on setuptools documentation page:

2024-11-15T19:53:30,642           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-15T19:53:30,648           If you don't want 'topaz.pretrained.denoise' to be distributed and are
2024-11-15T19:53:30,648           already explicitly excluding 'topaz.pretrained.denoise' via
2024-11-15T19:53:30,649           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-15T19:53:30,649           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-15T19:53:30,650           combination with a more fine grained `package-data` configuration.

2024-11-15T19:53:30,651           You can read more about "package data files" on setuptools documentation page:

2024-11-15T19:53:30,652           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-15T19:53:30,654           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-15T19:53:30,655                 even if it does not contain any `.py` files.
2024-11-15T19:53:30,655                 On the other hand, currently there is no concept of package data
2024-11-15T19:53:30,656                 directory, all directories are treated like packages.
2024-11-15T19:53:30,657           ********************************************************************************

2024-11-15T19:53:30,658   !!
2024-11-15T19:53:30,658     check.warn(importable)
2024-11-15T19:53:30,659   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration.
2024-11-15T19:53:30,659   !!

2024-11-15T19:53:30,661           ********************************************************************************
2024-11-15T19:53:30,661           ############################
2024-11-15T19:53:30,662           # Package would be ignored #
2024-11-15T19:53:30,663           ############################
2024-11-15T19:53:30,663           Python recognizes 'topaz.pretrained.detector' as an importable package[^1],
2024-11-15T19:53:30,664           but it is absent from setuptools' `packages` configuration.

2024-11-15T19:53:30,666           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-15T19:53:30,666           package, please make sure that 'topaz.pretrained.detector' is explicitly added
2024-11-15T19:53:30,667           to the `packages` configuration field.

2024-11-15T19:53:30,667           Alternatively, you can also rely on setuptools' discovery methods
2024-11-15T19:53:30,668           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-15T19:53:30,668           instead of `find_packages(...)`/`find:`).

2024-11-15T19:53:30,669           You can read more about "package discovery" on setuptools documentation page:

2024-11-15T19:53:30,670           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-15T19:53:30,671           If you don't want 'topaz.pretrained.detector' to be distributed and are
2024-11-15T19:53:30,672           already explicitly excluding 'topaz.pretrained.detector' via
2024-11-15T19:53:30,672           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-15T19:53:30,672           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-15T19:53:30,673           combination with a more fine grained `package-data` configuration.

2024-11-15T19:53:30,674           You can read more about "package data files" on setuptools documentation page:

2024-11-15T19:53:30,675           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-15T19:53:30,677           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-15T19:53:30,677                 even if it does not contain any `.py` files.
2024-11-15T19:53:30,678                 On the other hand, currently there is no concept of package data
2024-11-15T19:53:30,678                 directory, all directories are treated like packages.
2024-11-15T19:53:30,679           ********************************************************************************

2024-11-15T19:53:30,680   !!
2024-11-15T19:53:30,681     check.warn(importable)
2024-11-15T19:53:30,682   creating build/lib/topaz/gui
2024-11-15T19:53:30,682   copying topaz/gui/topaz.html -> build/lib/topaz/gui
2024-11-15T19:53:30,683   creating build/lib/topaz/pretrained/denoise
2024-11-15T19:53:30,684   copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:30,684   copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:30,685   copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:30,923   copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:31,102   copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:31,164   copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:31,229   copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-11-15T19:53:31,271   creating build/lib/topaz/pretrained/detector
2024-11-15T19:53:31,272   copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector
2024-11-15T19:53:31,305   copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector
2024-11-15T19:53:32,576   copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector
2024-11-15T19:53:32,659   copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector
2024-11-15T19:53:32,893   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-15T19:53:32,894   !!

2024-11-15T19:53:32,895           ********************************************************************************
2024-11-15T19:53:32,896           Please avoid running ``setup.py`` directly.
2024-11-15T19:53:32,897           Instead, use pypa/build, pypa/installer or other
2024-11-15T19:53:32,897           standards-based tools.

2024-11-15T19:53:32,899           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-15T19:53:32,899           ********************************************************************************

2024-11-15T19:53:32,900   !!
2024-11-15T19:53:32,901     self.initialize_options()
2024-11-15T19:53:32,927   installing to build/bdist.linux-armv7l/wheel
2024-11-15T19:53:32,927   running install
2024-11-15T19:53:32,952   running install_lib
2024-11-15T19:53:32,983   creating build/bdist.linux-armv7l/wheel
2024-11-15T19:53:32,987   creating build/bdist.linux-armv7l/wheel/topaz
2024-11-15T19:53:32,989   copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:32,993   creating build/bdist.linux-armv7l/wheel/topaz/denoising
2024-11-15T19:53:32,994   copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-15T19:53:32,998   copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-15T19:53:33,002   copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-15T19:53:33,006   copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-11-15T19:53:33,009   creating build/bdist.linux-armv7l/wheel/topaz/model
2024-11-15T19:53:33,011   copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-15T19:53:33,014   copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-15T19:53:33,017   copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-15T19:53:33,021   creating build/bdist.linux-armv7l/wheel/topaz/model/features
2024-11-15T19:53:33,023   copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-15T19:53:33,029   copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-15T19:53:33,032   copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-15T19:53:33,036   copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-15T19:53:33,038   copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-11-15T19:53:33,042   copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-15T19:53:33,045   copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-11-15T19:53:33,047   creating build/bdist.linux-armv7l/wheel/topaz/gui
2024-11-15T19:53:33,059   copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui
2024-11-15T19:53:33,076   copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:33,079   creating build/bdist.linux-armv7l/wheel/topaz/pretrained
2024-11-15T19:53:33,082   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector
2024-11-15T19:53:33,084   copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-15T19:53:33,144   copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-15T19:53:33,322   copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-15T19:53:33,440   copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-11-15T19:53:33,463   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
2024-11-15T19:53:33,465   copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:33,666   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:33,793   copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:33,959   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:34,023   copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:34,066   copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:34,068   copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-11-15T19:53:34,107   creating build/bdist.linux-armv7l/wheel/topaz/utils
2024-11-15T19:53:34,108   creating build/bdist.linux-armv7l/wheel/topaz/utils/data
2024-11-15T19:53:34,110   copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,112   copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,114   copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,116   copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,118   copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,120   copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,122   copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-11-15T19:53:34,124   copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,126   copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,129   copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,132   copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,134   copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,136   copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,137   copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-11-15T19:53:34,139   copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,142   copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,145   creating build/bdist.linux-armv7l/wheel/topaz/commands
2024-11-15T19:53:34,146   copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,148   copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,150   copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,153   copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,155   copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,157   copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,159   copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,161   copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,163   copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,166   copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,168   copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,170   copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,173   copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,174   copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,176   copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,178   copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,180   copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,183   copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,185   copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,187   copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,188   copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,190   copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-11-15T19:53:34,193   copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,195   copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,198   copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,200   copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,202   copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,204   copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,206   copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:34,220   creating build/bdist.linux-armv7l/wheel/topaz/transform
2024-11-15T19:53:34,274   copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-11-15T19:53:34,918   copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-11-15T19:53:35,399   copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:35,403   copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:35,407   copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:35,413   copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-11-15T19:53:35,419   running install_egg_info
2024-11-15T19:53:35,505   Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.1-py3.11.egg-info
2024-11-15T19:53:35,521   running install_scripts
2024-11-15T19:53:35,542   creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.1.dist-info/WHEEL
2024-11-15T19:53:35,544   creating '/tmp/pip-wheel-w5nwdj_z/topaz_em-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-15T19:53:35,547   adding 'topaz/__init__.py'
2024-11-15T19:53:35,548   adding 'topaz/_version.py'
2024-11-15T19:53:35,550   adding 'topaz/algorithms.py'
2024-11-15T19:53:35,551   adding 'topaz/cuda.py'
2024-11-15T19:53:35,554   adding 'topaz/denoise.py'
2024-11-15T19:53:35,557   adding 'topaz/extract.py'
2024-11-15T19:53:35,559   adding 'topaz/filters.py'
2024-11-15T19:53:35,560   adding 'topaz/main.py'
2024-11-15T19:53:35,562   adding 'topaz/methods.py'
2024-11-15T19:53:35,563   adding 'topaz/metrics.py'
2024-11-15T19:53:35,565   adding 'topaz/mrc.py'
2024-11-15T19:53:35,566   adding 'topaz/predict.py'
2024-11-15T19:53:35,568   adding 'topaz/stats.py'
2024-11-15T19:53:35,570   adding 'topaz/torch.py'
2024-11-15T19:53:35,574   adding 'topaz/training.py'
2024-11-15T19:53:35,575   adding 'topaz/commands/__init__.py'
2024-11-15T19:53:35,577   adding 'topaz/commands/boxes_to_coordinates.py'
2024-11-15T19:53:35,579   adding 'topaz/commands/convert.py'
2024-11-15T19:53:35,580   adding 'topaz/commands/coordinates_to_boxes.py'
2024-11-15T19:53:35,581   adding 'topaz/commands/coordinates_to_eman2_json.py'
2024-11-15T19:53:35,582   adding 'topaz/commands/coordinates_to_star.py'
2024-11-15T19:53:35,584   adding 'topaz/commands/denoise.py'
2024-11-15T19:53:35,586   adding 'topaz/commands/denoise3d.py'
2024-11-15T19:53:35,587   adding 'topaz/commands/downsample.py'
2024-11-15T19:53:35,588   adding 'topaz/commands/extract.py'
2024-11-15T19:53:35,589   adding 'topaz/commands/gui.py'
2024-11-15T19:53:35,591   adding 'topaz/commands/normalize.py'
2024-11-15T19:53:35,592   adding 'topaz/commands/particle_stack.py'
2024-11-15T19:53:35,593   adding 'topaz/commands/precision_recall_curve.py'
2024-11-15T19:53:35,594   adding 'topaz/commands/preprocess.py'
2024-11-15T19:53:35,596   adding 'topaz/commands/scale_coordinates.py'
2024-11-15T19:53:35,597   adding 'topaz/commands/segment.py'
2024-11-15T19:53:35,598   adding 'topaz/commands/split.py'
2024-11-15T19:53:35,599   adding 'topaz/commands/star_particles_threshold.py'
2024-11-15T19:53:35,601   adding 'topaz/commands/star_to_coordinates.py'
2024-11-15T19:53:35,603   adding 'topaz/commands/train.py'
2024-11-15T19:53:35,604   adding 'topaz/commands/train_test_split.py'
2024-11-15T19:53:35,606   adding 'topaz/denoising/__init__.py'
2024-11-15T19:53:35,608   adding 'topaz/denoising/datasets.py'
2024-11-15T19:53:35,611   adding 'topaz/denoising/models.py'
2024-11-15T19:53:35,612   adding 'topaz/denoising/utils.py'
2024-11-15T19:53:35,666   adding 'topaz/gui/topaz.html'
2024-11-15T19:53:35,671   adding 'topaz/model/__init__.py'
2024-11-15T19:53:35,673   adding 'topaz/model/classifier.py'
2024-11-15T19:53:35,674   adding 'topaz/model/factory.py'
2024-11-15T19:53:35,676   adding 'topaz/model/generative.py'
2024-11-15T19:53:35,678   adding 'topaz/model/utils.py'
2024-11-15T19:53:35,681   adding 'topaz/model/features/__init__.py'
2024-11-15T19:53:35,683   adding 'topaz/model/features/basic.py'
2024-11-15T19:53:35,686   adding 'topaz/model/features/densenet.py'
2024-11-15T19:53:35,689   adding 'topaz/model/features/msnet.py'
2024-11-15T19:53:35,691   adding 'topaz/model/features/resnet.py'
2024-11-15T19:53:35,694   adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav'
2024-11-15T19:53:36,002   adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav'
2024-11-15T19:53:37,804   adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav'
2024-11-15T19:53:39,669   adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav'
2024-11-15T19:53:40,336   adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav'
2024-11-15T19:53:41,049   adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav'
2024-11-15T19:53:41,479   adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav'
2024-11-15T19:53:41,782   adding 'topaz/pretrained/detector/resnet16_u32.sav'
2024-11-15T19:53:42,914   adding 'topaz/pretrained/detector/resnet16_u64.sav'
2024-11-15T19:53:43,162   adding 'topaz/pretrained/detector/resnet8_u32.sav'
2024-11-15T19:53:43,967   adding 'topaz/pretrained/detector/resnet8_u64.sav'
2024-11-15T19:53:44,002   adding 'topaz/transform/__init__.py'
2024-11-15T19:53:44,004   adding 'topaz/transform/scaled_gaussian_mixture.py'
2024-11-15T19:53:44,006   adding 'topaz/utils/__init__.py'
2024-11-15T19:53:44,008   adding 'topaz/utils/conversions.py'
2024-11-15T19:53:44,010   adding 'topaz/utils/files.py'
2024-11-15T19:53:44,012   adding 'topaz/utils/image.py'
2024-11-15T19:53:44,014   adding 'topaz/utils/picks.py'
2024-11-15T19:53:44,015   adding 'topaz/utils/printing.py'
2024-11-15T19:53:44,017   adding 'topaz/utils/star.py'
2024-11-15T19:53:44,019   adding 'topaz/utils/data/__init__.py'
2024-11-15T19:53:44,020   adding 'topaz/utils/data/coordinates.py'
2024-11-15T19:53:44,023   adding 'topaz/utils/data/loader.py'
2024-11-15T19:53:44,025   adding 'topaz/utils/data/memory_mapped_data.py'
2024-11-15T19:53:44,026   adding 'topaz/utils/data/partition.py'
2024-11-15T19:53:44,028   adding 'topaz/utils/data/sampler.py'
2024-11-15T19:53:44,030   adding 'topaz/utils/data/train_test_split_micrographs.py'
2024-11-15T19:53:44,038   adding 'topaz_em-0.3.1.dist-info/LICENSE'
2024-11-15T19:53:44,040   adding 'topaz_em-0.3.1.dist-info/METADATA'
2024-11-15T19:53:44,041   adding 'topaz_em-0.3.1.dist-info/WHEEL'
2024-11-15T19:53:44,042   adding 'topaz_em-0.3.1.dist-info/entry_points.txt'
2024-11-15T19:53:44,044   adding 'topaz_em-0.3.1.dist-info/top_level.txt'
2024-11-15T19:53:44,046   adding 'topaz_em-0.3.1.dist-info/RECORD'
2024-11-15T19:53:44,532   removing build/bdist.linux-armv7l/wheel
2024-11-15T19:53:44,684   Building wheel for topaz-em (setup.py): finished with status 'done'
2024-11-15T19:53:45,161   Created wheel for topaz-em: filename=topaz_em-0.3.1-py3-none-any.whl size=48203275 sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c
2024-11-15T19:53:45,162   Stored in directory: /tmp/pip-ephem-wheel-cache-6vda3pj0/wheels/bc/9b/c8/46224566b10862acc4594ae4e94164a664e75e9d32bb4983e7
2024-11-15T19:53:45,190 Successfully built topaz-em
2024-11-15T19:53:46,461 Removed build tracker: '/tmp/pip-build-tracker-csisdfpt'