2024-11-18T20:30:11,507 Created temporary directory: /tmp/pip-build-tracker-4dol7i9v 2024-11-18T20:30:11,508 Initialized build tracking at /tmp/pip-build-tracker-4dol7i9v 2024-11-18T20:30:11,509 Created build tracker: /tmp/pip-build-tracker-4dol7i9v 2024-11-18T20:30:11,509 Entered build tracker: /tmp/pip-build-tracker-4dol7i9v 2024-11-18T20:30:11,510 Created temporary directory: /tmp/pip-wheel-gsh5v31o 2024-11-18T20:30:11,514 Created temporary directory: /tmp/pip-ephem-wheel-cache-rwm96zv8 2024-11-18T20:30:11,559 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-18T20:30:11,562 2 location(s) to search for versions of biofit: 2024-11-18T20:30:11,562 * https://pypi.org/simple/biofit/ 2024-11-18T20:30:11,562 * https://www.piwheels.org/simple/biofit/ 2024-11-18T20:30:11,563 Fetching project page and analyzing links: https://pypi.org/simple/biofit/ 2024-11-18T20:30:11,563 Getting page https://pypi.org/simple/biofit/ 2024-11-18T20:30:11,565 Found index url https://pypi.org/simple/ 2024-11-18T20:30:11,785 Fetched page https://pypi.org/simple/biofit/ as application/vnd.pypi.simple.v1+json 2024-11-18T20:30:11,787 Skipping link: No binaries permitted for biofit: https://files.pythonhosted.org/packages/60/9d/2b81cc24c6c2cc814ba11de571c27dd084e662ceab828d51eed1956f5495/biofit-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biofit/) (requires-python:<3.12.0,>=3.8.0) 2024-11-18T20:30:11,788 Found link https://files.pythonhosted.org/packages/f4/d2/0077210f703999578e2a5827e69a8db4f197bfdebfa5c2d0523d87d04d29/biofit-0.0.1.tar.gz (from https://pypi.org/simple/biofit/) (requires-python:<3.12.0,>=3.8.0), version: 0.0.1 2024-11-18T20:30:11,789 Fetching project page and analyzing links: https://www.piwheels.org/simple/biofit/ 2024-11-18T20:30:11,790 Getting page https://www.piwheels.org/simple/biofit/ 2024-11-18T20:30:11,791 Found index url https://www.piwheels.org/simple/ 2024-11-18T20:30:11,960 Fetched page https://www.piwheels.org/simple/biofit/ as text/html 2024-11-18T20:30:11,962 Skipping link: not a file: https://www.piwheels.org/simple/biofit/ 2024-11-18T20:30:11,962 Skipping link: not a file: https://pypi.org/simple/biofit/ 2024-11-18T20:30:11,981 Given no hashes to check 1 links for project 'biofit': discarding no candidates 2024-11-18T20:30:11,983 Collecting biofit==0.0.1 2024-11-18T20:30:11,985 Created temporary directory: /tmp/pip-unpack-jgvklb7d 2024-11-18T20:30:12,228 Downloading biofit-0.0.1.tar.gz (208 kB) 2024-11-18T20:30:12,665 Added biofit==0.0.1 from https://files.pythonhosted.org/packages/f4/d2/0077210f703999578e2a5827e69a8db4f197bfdebfa5c2d0523d87d04d29/biofit-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-4dol7i9v' 2024-11-18T20:30:12,668 Running setup.py (path:/tmp/pip-wheel-gsh5v31o/biofit_6251e14dc36a4b5c96ea2577a2e448ca/setup.py) egg_info for package biofit 2024-11-18T20:30:12,669 Created temporary directory: /tmp/pip-pip-egg-info-8ejco1zd 2024-11-18T20:30:12,669 Preparing metadata (setup.py): started 2024-11-18T20:30:12,671 Running command python setup.py egg_info 2024-11-18T20:30:13,832 running egg_info 2024-11-18T20:30:13,859 creating /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info 2024-11-18T20:30:13,860 writing /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/PKG-INFO 2024-11-18T20:30:13,883 writing dependency_links to /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/dependency_links.txt 2024-11-18T20:30:13,884 writing entry points to /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/entry_points.txt 2024-11-18T20:30:13,895 writing requirements to /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/requires.txt 2024-11-18T20:30:13,897 writing top-level names to /tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/top_level.txt 2024-11-18T20:30:13,898 writing manifest file '/tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/SOURCES.txt' 2024-11-18T20:30:14,034 reading manifest file '/tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/SOURCES.txt' 2024-11-18T20:30:14,036 reading manifest template 'MANIFEST.in' 2024-11-18T20:30:14,098 adding license file 'LICENSE' 2024-11-18T20:30:14,106 writing manifest file '/tmp/pip-pip-egg-info-8ejco1zd/biofit.egg-info/SOURCES.txt' 2024-11-18T20:30:14,215 Preparing metadata (setup.py): finished with status 'done' 2024-11-18T20:30:14,220 Source in /tmp/pip-wheel-gsh5v31o/biofit_6251e14dc36a4b5c96ea2577a2e448ca has version 0.0.1, which satisfies requirement biofit==0.0.1 from https://files.pythonhosted.org/packages/f4/d2/0077210f703999578e2a5827e69a8db4f197bfdebfa5c2d0523d87d04d29/biofit-0.0.1.tar.gz 2024-11-18T20:30:14,221 Removed biofit==0.0.1 from https://files.pythonhosted.org/packages/f4/d2/0077210f703999578e2a5827e69a8db4f197bfdebfa5c2d0523d87d04d29/biofit-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-4dol7i9v' 2024-11-18T20:30:14,269 Created temporary directory: /tmp/pip-unpack-of5qy6rl 2024-11-18T20:30:14,270 Created temporary directory: /tmp/pip-unpack-1yrbe48x 2024-11-18T20:30:14,270 Building wheels for collected packages: biofit 2024-11-18T20:30:14,275 Created temporary directory: /tmp/pip-wheel-_g6_4bzo 2024-11-18T20:30:14,275 Building wheel for biofit (setup.py): started 2024-11-18T20:30:14,277 Destination directory: /tmp/pip-wheel-_g6_4bzo 2024-11-18T20:30:14,277 Running command python setup.py bdist_wheel 2024-11-18T20:30:15,336 running bdist_wheel 2024-11-18T20:30:15,467 running build 2024-11-18T20:30:15,468 running build_py 2024-11-18T20:30:15,497 creating build/lib/biofit 2024-11-18T20:30:15,502 copying src/biofit/eval.py -> build/lib/biofit 2024-11-18T20:30:15,505 copying src/biofit/processing.py -> build/lib/biofit 2024-11-18T20:30:15,509 copying src/biofit/__main__.py -> build/lib/biofit 2024-11-18T20:30:15,511 copying src/biofit/train_eval_utils.py -> build/lib/biofit 2024-11-18T20:30:15,514 copying src/biofit/config.py -> build/lib/biofit 2024-11-18T20:30:15,516 copying src/biofit/__init__.py -> build/lib/biofit 2024-11-18T20:30:15,518 copying src/biofit/train.py -> build/lib/biofit 2024-11-18T20:30:15,521 copying src/biofit/exceptions.py -> build/lib/biofit 2024-11-18T20:30:15,523 creating build/lib/biofit/stat 2024-11-18T20:30:15,524 copying src/biofit/stat/__init__.py -> build/lib/biofit/stat 2024-11-18T20:30:15,526 copying src/biofit/stat/stat.py -> build/lib/biofit/stat 2024-11-18T20:30:15,528 creating build/lib/biofit/models 2024-11-18T20:30:15,530 copying src/biofit/models/models.py -> build/lib/biofit/models 2024-11-18T20:30:15,532 copying src/biofit/models/__init__.py -> build/lib/biofit/models 2024-11-18T20:30:15,535 creating build/lib/biofit/auto 2024-11-18T20:30:15,536 copying src/biofit/auto/modeling_auto.py -> build/lib/biofit/auto 2024-11-18T20:30:15,538 copying src/biofit/auto/processing_auto.py -> build/lib/biofit/auto 2024-11-18T20:30:15,540 copying src/biofit/auto/plotting_auto.py -> build/lib/biofit/auto 2024-11-18T20:30:15,542 copying src/biofit/auto/__init__.py -> build/lib/biofit/auto 2024-11-18T20:30:15,544 copying src/biofit/auto/auto_factory.py -> build/lib/biofit/auto 2024-11-18T20:30:15,546 copying src/biofit/auto/configuration_auto.py -> build/lib/biofit/auto 2024-11-18T20:30:15,551 creating build/lib/biofit/visualization 2024-11-18T20:30:15,552 copying src/biofit/visualization/dimension_reduction.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,555 copying src/biofit/visualization/plotting_utils.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,558 copying src/biofit/visualization/histogram.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,560 copying src/biofit/visualization/violin.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,562 copying src/biofit/visualization/__init__.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,564 copying src/biofit/visualization/feature_importance.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,567 copying src/biofit/visualization/scatterplot.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,569 copying src/biofit/visualization/barplot.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,572 copying src/biofit/visualization/sample_metadata.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,574 copying src/biofit/visualization/plotting.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,577 copying src/biofit/visualization/report_generation.py -> build/lib/biofit/visualization 2024-11-18T20:30:15,579 creating build/lib/biofit/cli 2024-11-18T20:30:15,580 copying src/biofit/cli/__init__.py -> build/lib/biofit/cli 2024-11-18T20:30:15,582 copying src/biofit/cli/main.py -> build/lib/biofit/cli 2024-11-18T20:30:15,584 copying src/biofit/cli/install_r.py -> build/lib/biofit/cli 2024-11-18T20:30:15,586 creating build/lib/biofit/preprocessing 2024-11-18T20:30:15,587 copying src/biofit/preprocessing/__init__.py -> build/lib/biofit/preprocessing 2024-11-18T20:30:15,590 creating build/lib/biofit/metrics 2024-11-18T20:30:15,591 copying src/biofit/metrics/__init__.py -> build/lib/biofit/metrics 2024-11-18T20:30:15,594 copying src/biofit/metrics/metrics.py -> build/lib/biofit/metrics 2024-11-18T20:30:15,596 creating build/lib/biofit/integration 2024-11-18T20:30:15,597 copying src/biofit/integration/__init__.py -> build/lib/biofit/integration 2024-11-18T20:30:15,599 copying src/biofit/integration/biosets.py -> build/lib/biofit/integration 2024-11-18T20:30:15,602 creating build/lib/biofit/utils 2024-11-18T20:30:15,603 copying src/biofit/utils/version.py -> build/lib/biofit/utils 2024-11-18T20:30:15,606 copying src/biofit/utils/recorder.py -> build/lib/biofit/utils 2024-11-18T20:30:15,608 copying src/biofit/utils/fingerprint.py -> build/lib/biofit/utils 2024-11-18T20:30:15,610 copying src/biofit/utils/__init__.py -> build/lib/biofit/utils 2024-11-18T20:30:15,612 copying src/biofit/utils/generic.py -> build/lib/biofit/utils 2024-11-18T20:30:15,616 copying src/biofit/utils/logging.py -> build/lib/biofit/utils 2024-11-18T20:30:15,618 copying src/biofit/utils/table_util.py -> build/lib/biofit/utils 2024-11-18T20:30:15,622 copying src/biofit/utils/types.py -> build/lib/biofit/utils 2024-11-18T20:30:15,623 copying src/biofit/utils/py_util.py -> build/lib/biofit/utils 2024-11-18T20:30:15,626 copying src/biofit/utils/gorilla.py -> build/lib/biofit/utils 2024-11-18T20:30:15,628 copying src/biofit/utils/doc.py -> build/lib/biofit/utils 2024-11-18T20:30:15,631 copying src/biofit/utils/file_utils.py -> build/lib/biofit/utils 2024-11-18T20:30:15,633 copying src/biofit/utils/_dill.py -> build/lib/biofit/utils 2024-11-18T20:30:15,636 creating build/lib/biofit/stat/summary 2024-11-18T20:30:15,637 copying src/biofit/stat/summary/__init__.py -> build/lib/biofit/stat/summary 2024-11-18T20:30:15,639 copying src/biofit/stat/summary/summary.py -> build/lib/biofit/stat/summary 2024-11-18T20:30:15,642 creating build/lib/biofit/stat/row_missingness 2024-11-18T20:30:15,643 copying src/biofit/stat/row_missingness/row_missingness.py -> build/lib/biofit/stat/row_missingness 2024-11-18T20:30:15,645 copying src/biofit/stat/row_missingness/__init__.py -> build/lib/biofit/stat/row_missingness 2024-11-18T20:30:15,647 creating build/lib/biofit/stat/row_mean 2024-11-18T20:30:15,649 copying src/biofit/stat/row_mean/__init__.py -> build/lib/biofit/stat/row_mean 2024-11-18T20:30:15,651 copying src/biofit/stat/row_mean/row_mean.py -> build/lib/biofit/stat/row_mean 2024-11-18T20:30:15,654 creating build/lib/biofit/stat/col_mean 2024-11-18T20:30:15,655 copying src/biofit/stat/col_mean/col_mean.py -> build/lib/biofit/stat/col_mean 2024-11-18T20:30:15,657 copying src/biofit/stat/col_mean/__init__.py -> build/lib/biofit/stat/col_mean 2024-11-18T20:30:15,660 creating build/lib/biofit/stat/distance 2024-11-18T20:30:15,661 copying src/biofit/stat/distance/__init__.py -> build/lib/biofit/stat/distance 2024-11-18T20:30:15,663 copying src/biofit/stat/distance/distance.py -> build/lib/biofit/stat/distance 2024-11-18T20:30:15,666 creating build/lib/biofit/stat/col_missingness 2024-11-18T20:30:15,667 copying src/biofit/stat/col_missingness/col_missingness.py -> build/lib/biofit/stat/col_missingness 2024-11-18T20:30:15,669 copying src/biofit/stat/col_missingness/__init__.py -> build/lib/biofit/stat/col_missingness 2024-11-18T20:30:15,672 creating build/lib/biofit/stat/row_sum 2024-11-18T20:30:15,673 copying src/biofit/stat/row_sum/row_sum.py -> build/lib/biofit/stat/row_sum 2024-11-18T20:30:15,675 copying src/biofit/stat/row_sum/__init__.py -> build/lib/biofit/stat/row_sum 2024-11-18T20:30:15,678 creating build/lib/biofit/stat/correlation 2024-11-18T20:30:15,679 copying src/biofit/stat/correlation/__init__.py -> build/lib/biofit/stat/correlation 2024-11-18T20:30:15,682 copying src/biofit/stat/correlation/correlation.py -> build/lib/biofit/stat/correlation 2024-11-18T20:30:15,684 creating build/lib/biofit/stat/col_sum 2024-11-18T20:30:15,685 copying src/biofit/stat/col_sum/col_sum.py -> build/lib/biofit/stat/col_sum 2024-11-18T20:30:15,688 copying src/biofit/stat/col_sum/__init__.py -> build/lib/biofit/stat/col_sum 2024-11-18T20:30:15,690 creating build/lib/biofit/models/lasso 2024-11-18T20:30:15,691 copying src/biofit/models/lasso/__init__.py -> build/lib/biofit/models/lasso 2024-11-18T20:30:15,693 copying src/biofit/models/lasso/lasso.py -> build/lib/biofit/models/lasso 2024-11-18T20:30:15,696 creating build/lib/biofit/models/ensemble 2024-11-18T20:30:15,697 copying src/biofit/models/ensemble/ensemble.py -> build/lib/biofit/models/ensemble 2024-11-18T20:30:15,699 copying src/biofit/models/ensemble/__init__.py -> build/lib/biofit/models/ensemble 2024-11-18T20:30:15,702 creating build/lib/biofit/models/logistic_regression 2024-11-18T20:30:15,703 copying src/biofit/models/logistic_regression/logistic_regression.py -> build/lib/biofit/models/logistic_regression 2024-11-18T20:30:15,705 copying src/biofit/models/logistic_regression/__init__.py -> build/lib/biofit/models/logistic_regression 2024-11-18T20:30:15,708 creating build/lib/biofit/models/random_forest 2024-11-18T20:30:15,709 copying src/biofit/models/random_forest/__init__.py -> build/lib/biofit/models/random_forest 2024-11-18T20:30:15,711 copying src/biofit/models/random_forest/random_forest.py -> build/lib/biofit/models/random_forest 2024-11-18T20:30:15,714 creating build/lib/biofit/models/lightgbm 2024-11-18T20:30:15,715 copying src/biofit/models/lightgbm/lightgbm.py -> build/lib/biofit/models/lightgbm 2024-11-18T20:30:15,718 copying src/biofit/models/lightgbm/__init__.py -> build/lib/biofit/models/lightgbm 2024-11-18T20:30:15,720 creating build/lib/biofit/preprocessing/encoding 2024-11-18T20:30:15,721 copying src/biofit/preprocessing/encoding/__init__.py -> build/lib/biofit/preprocessing/encoding 2024-11-18T20:30:15,723 copying src/biofit/preprocessing/encoding/encoding.py -> build/lib/biofit/preprocessing/encoding 2024-11-18T20:30:15,726 creating build/lib/biofit/preprocessing/filtering 2024-11-18T20:30:15,727 copying src/biofit/preprocessing/filtering/__init__.py -> build/lib/biofit/preprocessing/filtering 2024-11-18T20:30:15,729 copying src/biofit/preprocessing/filtering/filtering.py -> build/lib/biofit/preprocessing/filtering 2024-11-18T20:30:15,731 copying src/biofit/preprocessing/filtering/plot_filtering.py -> build/lib/biofit/preprocessing/filtering 2024-11-18T20:30:15,733 creating build/lib/biofit/preprocessing/feature_extraction 2024-11-18T20:30:15,734 copying src/biofit/preprocessing/feature_extraction/__init__.py -> build/lib/biofit/preprocessing/feature_extraction 2024-11-18T20:30:15,736 copying src/biofit/preprocessing/feature_extraction/plot_feature_extraction.py -> build/lib/biofit/preprocessing/feature_extraction 2024-11-18T20:30:15,738 copying src/biofit/preprocessing/feature_extraction/feature_extraction.py -> build/lib/biofit/preprocessing/feature_extraction 2024-11-18T20:30:15,741 creating build/lib/biofit/preprocessing/scaling 2024-11-18T20:30:15,742 copying src/biofit/preprocessing/scaling/plot_scaling.py -> build/lib/biofit/preprocessing/scaling 2024-11-18T20:30:15,744 copying src/biofit/preprocessing/scaling/__init__.py -> build/lib/biofit/preprocessing/scaling 2024-11-18T20:30:15,746 copying src/biofit/preprocessing/scaling/scaling.py -> build/lib/biofit/preprocessing/scaling 2024-11-18T20:30:15,748 creating build/lib/biofit/preprocessing/resampling 2024-11-18T20:30:15,749 copying src/biofit/preprocessing/resampling/resampling.py -> build/lib/biofit/preprocessing/resampling 2024-11-18T20:30:15,751 copying src/biofit/preprocessing/resampling/__init__.py -> build/lib/biofit/preprocessing/resampling 2024-11-18T20:30:15,754 creating build/lib/biofit/preprocessing/imputation 2024-11-18T20:30:15,755 copying src/biofit/preprocessing/imputation/__init__.py -> build/lib/biofit/preprocessing/imputation 2024-11-18T20:30:15,757 copying src/biofit/preprocessing/imputation/imputation.py -> build/lib/biofit/preprocessing/imputation 2024-11-18T20:30:15,759 creating build/lib/biofit/preprocessing/transformation 2024-11-18T20:30:15,760 copying src/biofit/preprocessing/transformation/__init__.py -> build/lib/biofit/preprocessing/transformation 2024-11-18T20:30:15,762 copying src/biofit/preprocessing/transformation/transformation.py -> build/lib/biofit/preprocessing/transformation 2024-11-18T20:30:15,765 creating build/lib/biofit/preprocessing/feature_selection 2024-11-18T20:30:15,766 copying src/biofit/preprocessing/feature_selection/plot_feature_selection.py -> build/lib/biofit/preprocessing/feature_selection 2024-11-18T20:30:15,768 copying src/biofit/preprocessing/feature_selection/__init__.py -> build/lib/biofit/preprocessing/feature_selection 2024-11-18T20:30:15,770 copying src/biofit/preprocessing/feature_selection/feature_selection.py -> build/lib/biofit/preprocessing/feature_selection 2024-11-18T20:30:15,772 creating build/lib/biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:15,776 copying src/biofit/preprocessing/encoding/label_encoding/__init__.py -> build/lib/biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:15,778 copying src/biofit/preprocessing/encoding/label_encoding/label_encoding.py -> build/lib/biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:15,781 creating build/lib/biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:15,782 copying src/biofit/preprocessing/encoding/label_binarizing/label_binarizing.py -> build/lib/biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:15,785 copying src/biofit/preprocessing/encoding/label_binarizing/__init__.py -> build/lib/biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:15,787 creating build/lib/biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:15,789 copying src/biofit/preprocessing/filtering/row_abundance/row_abundance.py -> build/lib/biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:15,792 copying src/biofit/preprocessing/filtering/row_abundance/__init__.py -> build/lib/biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:15,794 copying src/biofit/preprocessing/filtering/row_abundance/plot_row_abundance.py -> build/lib/biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:15,797 creating build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:15,798 copying src/biofit/preprocessing/filtering/min_prevalence_sample_filter/__init__.py -> build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:15,800 copying src/biofit/preprocessing/filtering/min_prevalence_sample_filter/plot_min_prevalence_sample_filter.py -> build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:15,803 copying src/biofit/preprocessing/filtering/min_prevalence_sample_filter/min_prevalence_sample_filter.py -> build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:15,806 creating build/lib/biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:15,807 copying src/biofit/preprocessing/filtering/missing_labels/__init__.py -> build/lib/biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:15,810 copying src/biofit/preprocessing/filtering/missing_labels/missing_labels.py -> build/lib/biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:15,819 creating build/lib/biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:15,821 copying src/biofit/preprocessing/feature_extraction/pcoa/pcoa.py -> build/lib/biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:15,823 copying src/biofit/preprocessing/feature_extraction/pcoa/__init__.py -> build/lib/biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:15,825 copying src/biofit/preprocessing/feature_extraction/pcoa/plot_pcoa.py -> build/lib/biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:15,828 creating build/lib/biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:15,829 copying src/biofit/preprocessing/feature_extraction/pca/__init__.py -> build/lib/biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:15,831 copying src/biofit/preprocessing/feature_extraction/pca/plot_pca.py -> build/lib/biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:15,833 copying src/biofit/preprocessing/feature_extraction/pca/pca.py -> build/lib/biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:15,835 creating build/lib/biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:15,837 copying src/biofit/preprocessing/scaling/relative_abundance/plot_relative_abundance.py -> build/lib/biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:15,839 copying src/biofit/preprocessing/scaling/relative_abundance/__init__.py -> build/lib/biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:15,841 copying src/biofit/preprocessing/scaling/relative_abundance/relative_abundance.py -> build/lib/biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:15,844 creating build/lib/biofit/preprocessing/scaling/tmm 2024-11-18T20:30:15,845 copying src/biofit/preprocessing/scaling/tmm/__init__.py -> build/lib/biofit/preprocessing/scaling/tmm 2024-11-18T20:30:15,847 copying src/biofit/preprocessing/scaling/tmm/tmm.py -> build/lib/biofit/preprocessing/scaling/tmm 2024-11-18T20:30:15,850 creating build/lib/biofit/preprocessing/scaling/clr 2024-11-18T20:30:15,852 copying src/biofit/preprocessing/scaling/clr/clr.py -> build/lib/biofit/preprocessing/scaling/clr 2024-11-18T20:30:15,854 copying src/biofit/preprocessing/scaling/clr/__init__.py -> build/lib/biofit/preprocessing/scaling/clr 2024-11-18T20:30:15,857 creating build/lib/biofit/preprocessing/scaling/css 2024-11-18T20:30:15,858 copying src/biofit/preprocessing/scaling/css/__init__.py -> build/lib/biofit/preprocessing/scaling/css 2024-11-18T20:30:15,860 copying src/biofit/preprocessing/scaling/css/plot_css.py -> build/lib/biofit/preprocessing/scaling/css 2024-11-18T20:30:15,863 copying src/biofit/preprocessing/scaling/css/css.py -> build/lib/biofit/preprocessing/scaling/css 2024-11-18T20:30:15,866 creating build/lib/biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:15,867 copying src/biofit/preprocessing/resampling/upsampling/__init__.py -> build/lib/biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:15,869 copying src/biofit/preprocessing/resampling/upsampling/upsampling.py -> build/lib/biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:15,872 creating build/lib/biofit/preprocessing/transformation/log 2024-11-18T20:30:15,873 copying src/biofit/preprocessing/transformation/log/__init__.py -> build/lib/biofit/preprocessing/transformation/log 2024-11-18T20:30:15,875 copying src/biofit/preprocessing/transformation/log/log.py -> build/lib/biofit/preprocessing/transformation/log 2024-11-18T20:30:15,878 creating build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:15,879 copying src/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/plot_min_prevalence_feature_selector.py -> build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:15,882 copying src/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/__init__.py -> build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:15,883 copying src/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/min_prevalence_feature_selector.py -> build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:15,887 creating build/lib/biofit/integration/R 2024-11-18T20:30:15,888 copying src/biofit/integration/R/r_caller.py -> build/lib/biofit/integration/R 2024-11-18T20:30:15,891 copying src/biofit/integration/R/__init__.py -> build/lib/biofit/integration/R 2024-11-18T20:30:15,894 running egg_info 2024-11-18T20:30:15,921 writing src/biofit.egg-info/PKG-INFO 2024-11-18T20:30:15,940 writing dependency_links to src/biofit.egg-info/dependency_links.txt 2024-11-18T20:30:15,942 writing entry points to src/biofit.egg-info/entry_points.txt 2024-11-18T20:30:15,952 writing requirements to src/biofit.egg-info/requires.txt 2024-11-18T20:30:15,954 writing top-level names to src/biofit.egg-info/top_level.txt 2024-11-18T20:30:16,022 reading manifest file 'src/biofit.egg-info/SOURCES.txt' 2024-11-18T20:30:16,031 reading manifest template 'MANIFEST.in' 2024-11-18T20:30:16,096 adding license file 'LICENSE' 2024-11-18T20:30:16,105 writing manifest file 'src/biofit.egg-info/SOURCES.txt' 2024-11-18T20:30:16,108 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'biofit.integration.R.scripts' is absent from the `packages` configuration. 2024-11-18T20:30:16,109 !! 2024-11-18T20:30:16,110 ******************************************************************************** 2024-11-18T20:30:16,110 ############################ 2024-11-18T20:30:16,110 # Package would be ignored # 2024-11-18T20:30:16,111 ############################ 2024-11-18T20:30:16,111 Python recognizes 'biofit.integration.R.scripts' as an importable package[^1], 2024-11-18T20:30:16,112 but it is absent from setuptools' `packages` configuration. 2024-11-18T20:30:16,113 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-18T20:30:16,114 package, please make sure that 'biofit.integration.R.scripts' is explicitly added 2024-11-18T20:30:16,114 to the `packages` configuration field. 2024-11-18T20:30:16,115 Alternatively, you can also rely on setuptools' discovery methods 2024-11-18T20:30:16,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-18T20:30:16,116 instead of `find_packages(...)`/`find:`). 2024-11-18T20:30:16,117 You can read more about "package discovery" on setuptools documentation page: 2024-11-18T20:30:16,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-18T20:30:16,119 If you don't want 'biofit.integration.R.scripts' to be distributed and are 2024-11-18T20:30:16,120 already explicitly excluding 'biofit.integration.R.scripts' via 2024-11-18T20:30:16,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-18T20:30:16,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-18T20:30:16,121 combination with a more fine grained `package-data` configuration. 2024-11-18T20:30:16,122 You can read more about "package data files" on setuptools documentation page: 2024-11-18T20:30:16,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-18T20:30:16,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-18T20:30:16,125 even if it does not contain any `.py` files. 2024-11-18T20:30:16,126 On the other hand, currently there is no concept of package data 2024-11-18T20:30:16,126 directory, all directories are treated like packages. 2024-11-18T20:30:16,127 ******************************************************************************** 2024-11-18T20:30:16,128 !! 2024-11-18T20:30:16,129 check.warn(importable) 2024-11-18T20:30:16,129 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'biofit.preprocessing.feature_selection.rfe' is absent from the `packages` configuration. 2024-11-18T20:30:16,130 !! 2024-11-18T20:30:16,131 ******************************************************************************** 2024-11-18T20:30:16,131 ############################ 2024-11-18T20:30:16,132 # Package would be ignored # 2024-11-18T20:30:16,132 ############################ 2024-11-18T20:30:16,133 Python recognizes 'biofit.preprocessing.feature_selection.rfe' as an importable package[^1], 2024-11-18T20:30:16,133 but it is absent from setuptools' `packages` configuration. 2024-11-18T20:30:16,134 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-18T20:30:16,134 package, please make sure that 'biofit.preprocessing.feature_selection.rfe' is explicitly added 2024-11-18T20:30:16,135 to the `packages` configuration field. 2024-11-18T20:30:16,136 Alternatively, you can also rely on setuptools' discovery methods 2024-11-18T20:30:16,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-18T20:30:16,137 instead of `find_packages(...)`/`find:`). 2024-11-18T20:30:16,138 You can read more about "package discovery" on setuptools documentation page: 2024-11-18T20:30:16,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-18T20:30:16,140 If you don't want 'biofit.preprocessing.feature_selection.rfe' to be distributed and are 2024-11-18T20:30:16,140 already explicitly excluding 'biofit.preprocessing.feature_selection.rfe' via 2024-11-18T20:30:16,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-18T20:30:16,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-18T20:30:16,142 combination with a more fine grained `package-data` configuration. 2024-11-18T20:30:16,142 You can read more about "package data files" on setuptools documentation page: 2024-11-18T20:30:16,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-18T20:30:16,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-18T20:30:16,146 even if it does not contain any `.py` files. 2024-11-18T20:30:16,146 On the other hand, currently there is no concept of package data 2024-11-18T20:30:16,147 directory, all directories are treated like packages. 2024-11-18T20:30:16,147 ******************************************************************************** 2024-11-18T20:30:16,149 !! 2024-11-18T20:30:16,149 check.warn(importable) 2024-11-18T20:30:16,150 copying src/biofit/visualization/plot_feature_importance.R -> build/lib/biofit/visualization 2024-11-18T20:30:16,151 copying src/biofit/visualization/plot_sample_metadata.R -> build/lib/biofit/visualization 2024-11-18T20:30:16,154 copying src/biofit/preprocessing/filtering/plot_filtering.R -> build/lib/biofit/preprocessing/filtering 2024-11-18T20:30:16,157 copying src/biofit/preprocessing/scaling/plot_scaling.R -> build/lib/biofit/preprocessing/scaling 2024-11-18T20:30:16,159 copying src/biofit/preprocessing/feature_selection/plot_feature_selection.R -> build/lib/biofit/preprocessing/feature_selection 2024-11-18T20:30:16,161 creating build/lib/biofit/preprocessing/feature_selection/rfe 2024-11-18T20:30:16,163 copying src/biofit/preprocessing/feature_selection/rfe/plot_rfe.R -> build/lib/biofit/preprocessing/feature_selection/rfe 2024-11-18T20:30:16,165 copying src/biofit/preprocessing/scaling/tmm/tmm.R -> build/lib/biofit/preprocessing/scaling/tmm 2024-11-18T20:30:16,167 creating build/lib/biofit/integration/R/scripts 2024-11-18T20:30:16,169 copying src/biofit/integration/R/scripts/analysis_utils.R -> build/lib/biofit/integration/R/scripts 2024-11-18T20:30:16,172 copying src/biofit/integration/R/scripts/dependencies.R -> build/lib/biofit/integration/R/scripts 2024-11-18T20:30:16,174 copying src/biofit/integration/R/scripts/plotting_utils.R -> build/lib/biofit/integration/R/scripts 2024-11-18T20:30:16,178 copying src/biofit/integration/R/scripts/utils.R -> build/lib/biofit/integration/R/scripts 2024-11-18T20:30:16,226 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-18T20:30:16,227 !! 2024-11-18T20:30:16,228 ******************************************************************************** 2024-11-18T20:30:16,229 Please avoid running ``setup.py`` directly. 2024-11-18T20:30:16,230 Instead, use pypa/build, pypa/installer or other 2024-11-18T20:30:16,230 standards-based tools. 2024-11-18T20:30:16,231 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-18T20:30:16,232 ******************************************************************************** 2024-11-18T20:30:16,233 !! 2024-11-18T20:30:16,233 self.initialize_options() 2024-11-18T20:30:16,255 installing to build/bdist.linux-armv7l/wheel 2024-11-18T20:30:16,255 running install 2024-11-18T20:30:16,281 running install_lib 2024-11-18T20:30:16,308 creating build/bdist.linux-armv7l/wheel 2024-11-18T20:30:16,311 creating build/bdist.linux-armv7l/wheel/biofit 2024-11-18T20:30:16,312 copying build/lib/biofit/eval.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,315 creating build/bdist.linux-armv7l/wheel/biofit/stat 2024-11-18T20:30:16,317 creating build/bdist.linux-armv7l/wheel/biofit/stat/summary 2024-11-18T20:30:16,319 copying build/lib/biofit/stat/summary/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/summary 2024-11-18T20:30:16,321 copying build/lib/biofit/stat/summary/summary.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/summary 2024-11-18T20:30:16,323 creating build/bdist.linux-armv7l/wheel/biofit/stat/row_missingness 2024-11-18T20:30:16,325 copying build/lib/biofit/stat/row_missingness/row_missingness.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_missingness 2024-11-18T20:30:16,327 copying build/lib/biofit/stat/row_missingness/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_missingness 2024-11-18T20:30:16,330 creating build/bdist.linux-armv7l/wheel/biofit/stat/row_mean 2024-11-18T20:30:16,331 copying build/lib/biofit/stat/row_mean/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_mean 2024-11-18T20:30:16,333 copying build/lib/biofit/stat/row_mean/row_mean.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_mean 2024-11-18T20:30:16,336 creating build/bdist.linux-armv7l/wheel/biofit/stat/col_mean 2024-11-18T20:30:16,337 copying build/lib/biofit/stat/col_mean/col_mean.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_mean 2024-11-18T20:30:16,339 copying build/lib/biofit/stat/col_mean/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_mean 2024-11-18T20:30:16,342 copying build/lib/biofit/stat/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat 2024-11-18T20:30:16,344 creating build/bdist.linux-armv7l/wheel/biofit/stat/distance 2024-11-18T20:30:16,345 copying build/lib/biofit/stat/distance/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/distance 2024-11-18T20:30:16,347 copying build/lib/biofit/stat/distance/distance.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/distance 2024-11-18T20:30:16,351 copying build/lib/biofit/stat/stat.py -> build/bdist.linux-armv7l/wheel/./biofit/stat 2024-11-18T20:30:16,353 creating build/bdist.linux-armv7l/wheel/biofit/stat/col_missingness 2024-11-18T20:30:16,355 copying build/lib/biofit/stat/col_missingness/col_missingness.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_missingness 2024-11-18T20:30:16,357 copying build/lib/biofit/stat/col_missingness/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_missingness 2024-11-18T20:30:16,360 creating build/bdist.linux-armv7l/wheel/biofit/stat/row_sum 2024-11-18T20:30:16,361 copying build/lib/biofit/stat/row_sum/row_sum.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_sum 2024-11-18T20:30:16,363 copying build/lib/biofit/stat/row_sum/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/row_sum 2024-11-18T20:30:16,366 creating build/bdist.linux-armv7l/wheel/biofit/stat/correlation 2024-11-18T20:30:16,367 copying build/lib/biofit/stat/correlation/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/correlation 2024-11-18T20:30:16,369 copying build/lib/biofit/stat/correlation/correlation.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/correlation 2024-11-18T20:30:16,372 creating build/bdist.linux-armv7l/wheel/biofit/stat/col_sum 2024-11-18T20:30:16,373 copying build/lib/biofit/stat/col_sum/col_sum.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_sum 2024-11-18T20:30:16,375 copying build/lib/biofit/stat/col_sum/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/stat/col_sum 2024-11-18T20:30:16,378 creating build/bdist.linux-armv7l/wheel/biofit/models 2024-11-18T20:30:16,379 copying build/lib/biofit/models/models.py -> build/bdist.linux-armv7l/wheel/./biofit/models 2024-11-18T20:30:16,382 creating build/bdist.linux-armv7l/wheel/biofit/models/lasso 2024-11-18T20:30:16,384 copying build/lib/biofit/models/lasso/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models/lasso 2024-11-18T20:30:16,386 copying build/lib/biofit/models/lasso/lasso.py -> build/bdist.linux-armv7l/wheel/./biofit/models/lasso 2024-11-18T20:30:16,388 copying build/lib/biofit/models/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models 2024-11-18T20:30:16,391 creating build/bdist.linux-armv7l/wheel/biofit/models/ensemble 2024-11-18T20:30:16,392 copying build/lib/biofit/models/ensemble/ensemble.py -> build/bdist.linux-armv7l/wheel/./biofit/models/ensemble 2024-11-18T20:30:16,394 copying build/lib/biofit/models/ensemble/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models/ensemble 2024-11-18T20:30:16,396 creating build/bdist.linux-armv7l/wheel/biofit/models/logistic_regression 2024-11-18T20:30:16,398 copying build/lib/biofit/models/logistic_regression/logistic_regression.py -> build/bdist.linux-armv7l/wheel/./biofit/models/logistic_regression 2024-11-18T20:30:16,400 copying build/lib/biofit/models/logistic_regression/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models/logistic_regression 2024-11-18T20:30:16,402 creating build/bdist.linux-armv7l/wheel/biofit/models/random_forest 2024-11-18T20:30:16,404 copying build/lib/biofit/models/random_forest/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models/random_forest 2024-11-18T20:30:16,406 copying build/lib/biofit/models/random_forest/random_forest.py -> build/bdist.linux-armv7l/wheel/./biofit/models/random_forest 2024-11-18T20:30:16,409 creating build/bdist.linux-armv7l/wheel/biofit/models/lightgbm 2024-11-18T20:30:16,410 copying build/lib/biofit/models/lightgbm/lightgbm.py -> build/bdist.linux-armv7l/wheel/./biofit/models/lightgbm 2024-11-18T20:30:16,413 copying build/lib/biofit/models/lightgbm/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/models/lightgbm 2024-11-18T20:30:16,415 creating build/bdist.linux-armv7l/wheel/biofit/auto 2024-11-18T20:30:16,417 copying build/lib/biofit/auto/modeling_auto.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,419 copying build/lib/biofit/auto/processing_auto.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,421 copying build/lib/biofit/auto/plotting_auto.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,423 copying build/lib/biofit/auto/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,425 copying build/lib/biofit/auto/auto_factory.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,428 copying build/lib/biofit/auto/configuration_auto.py -> build/bdist.linux-armv7l/wheel/./biofit/auto 2024-11-18T20:30:16,431 copying build/lib/biofit/processing.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,435 copying build/lib/biofit/__main__.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,438 creating build/bdist.linux-armv7l/wheel/biofit/visualization 2024-11-18T20:30:16,439 copying build/lib/biofit/visualization/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,442 copying build/lib/biofit/visualization/plotting_utils.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,445 copying build/lib/biofit/visualization/histogram.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,447 copying build/lib/biofit/visualization/violin.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,449 copying build/lib/biofit/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,451 copying build/lib/biofit/visualization/feature_importance.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,453 copying build/lib/biofit/visualization/plot_sample_metadata.R -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,455 copying build/lib/biofit/visualization/plot_feature_importance.R -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,458 copying build/lib/biofit/visualization/scatterplot.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,460 copying build/lib/biofit/visualization/barplot.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,462 copying build/lib/biofit/visualization/sample_metadata.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,464 copying build/lib/biofit/visualization/plotting.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,467 copying build/lib/biofit/visualization/report_generation.py -> build/bdist.linux-armv7l/wheel/./biofit/visualization 2024-11-18T20:30:16,469 copying build/lib/biofit/train_eval_utils.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,473 copying build/lib/biofit/config.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,476 creating build/bdist.linux-armv7l/wheel/biofit/cli 2024-11-18T20:30:16,477 copying build/lib/biofit/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/cli 2024-11-18T20:30:16,479 copying build/lib/biofit/cli/main.py -> build/bdist.linux-armv7l/wheel/./biofit/cli 2024-11-18T20:30:16,481 copying build/lib/biofit/cli/install_r.py -> build/bdist.linux-armv7l/wheel/./biofit/cli 2024-11-18T20:30:16,483 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing 2024-11-18T20:30:16,485 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/encoding 2024-11-18T20:30:16,487 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:16,489 copying build/lib/biofit/preprocessing/encoding/label_encoding/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:16,491 copying build/lib/biofit/preprocessing/encoding/label_encoding/label_encoding.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding/label_encoding 2024-11-18T20:30:16,494 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:16,495 copying build/lib/biofit/preprocessing/encoding/label_binarizing/label_binarizing.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:16,498 copying build/lib/biofit/preprocessing/encoding/label_binarizing/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding/label_binarizing 2024-11-18T20:30:16,499 copying build/lib/biofit/preprocessing/encoding/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding 2024-11-18T20:30:16,502 copying build/lib/biofit/preprocessing/encoding/encoding.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/encoding 2024-11-18T20:30:16,504 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/filtering 2024-11-18T20:30:16,505 copying build/lib/biofit/preprocessing/filtering/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering 2024-11-18T20:30:16,507 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:16,509 copying build/lib/biofit/preprocessing/filtering/row_abundance/row_abundance.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:16,511 copying build/lib/biofit/preprocessing/filtering/row_abundance/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:16,513 copying build/lib/biofit/preprocessing/filtering/row_abundance/plot_row_abundance.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/row_abundance 2024-11-18T20:30:16,515 copying build/lib/biofit/preprocessing/filtering/plot_filtering.R -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering 2024-11-18T20:30:16,518 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:16,519 copying build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:16,522 copying build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter/plot_min_prevalence_sample_filter.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:16,524 copying build/lib/biofit/preprocessing/filtering/min_prevalence_sample_filter/min_prevalence_sample_filter.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/min_prevalence_sample_filter 2024-11-18T20:30:16,526 copying build/lib/biofit/preprocessing/filtering/filtering.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering 2024-11-18T20:30:16,529 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:16,530 copying build/lib/biofit/preprocessing/filtering/missing_labels/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:16,532 copying build/lib/biofit/preprocessing/filtering/missing_labels/missing_labels.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering/missing_labels 2024-11-18T20:30:16,534 copying build/lib/biofit/preprocessing/filtering/plot_filtering.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/filtering 2024-11-18T20:30:16,537 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_extraction 2024-11-18T20:30:16,538 copying build/lib/biofit/preprocessing/feature_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction 2024-11-18T20:30:16,540 copying build/lib/biofit/preprocessing/feature_extraction/plot_feature_extraction.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction 2024-11-18T20:30:16,542 copying build/lib/biofit/preprocessing/feature_extraction/feature_extraction.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction 2024-11-18T20:30:16,545 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:16,546 copying build/lib/biofit/preprocessing/feature_extraction/pcoa/pcoa.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:16,549 copying build/lib/biofit/preprocessing/feature_extraction/pcoa/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:16,551 copying build/lib/biofit/preprocessing/feature_extraction/pcoa/plot_pcoa.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pcoa 2024-11-18T20:30:16,553 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:16,554 copying build/lib/biofit/preprocessing/feature_extraction/pca/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:16,557 copying build/lib/biofit/preprocessing/feature_extraction/pca/plot_pca.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:16,559 copying build/lib/biofit/preprocessing/feature_extraction/pca/pca.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_extraction/pca 2024-11-18T20:30:16,561 copying build/lib/biofit/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing 2024-11-18T20:30:16,563 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/scaling 2024-11-18T20:30:16,565 copying build/lib/biofit/preprocessing/scaling/plot_scaling.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling 2024-11-18T20:30:16,567 copying build/lib/biofit/preprocessing/scaling/plot_scaling.R -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling 2024-11-18T20:30:16,569 copying build/lib/biofit/preprocessing/scaling/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling 2024-11-18T20:30:16,572 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:16,573 copying build/lib/biofit/preprocessing/scaling/relative_abundance/plot_relative_abundance.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:16,575 copying build/lib/biofit/preprocessing/scaling/relative_abundance/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:16,577 copying build/lib/biofit/preprocessing/scaling/relative_abundance/relative_abundance.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/relative_abundance 2024-11-18T20:30:16,580 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/scaling/tmm 2024-11-18T20:30:16,581 copying build/lib/biofit/preprocessing/scaling/tmm/tmm.R -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/tmm 2024-11-18T20:30:16,583 copying build/lib/biofit/preprocessing/scaling/tmm/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/tmm 2024-11-18T20:30:16,585 copying build/lib/biofit/preprocessing/scaling/tmm/tmm.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/tmm 2024-11-18T20:30:16,588 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/scaling/clr 2024-11-18T20:30:16,589 copying build/lib/biofit/preprocessing/scaling/clr/clr.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/clr 2024-11-18T20:30:16,592 copying build/lib/biofit/preprocessing/scaling/clr/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/clr 2024-11-18T20:30:16,594 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/scaling/css 2024-11-18T20:30:16,595 copying build/lib/biofit/preprocessing/scaling/css/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/css 2024-11-18T20:30:16,598 copying build/lib/biofit/preprocessing/scaling/css/plot_css.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/css 2024-11-18T20:30:16,600 copying build/lib/biofit/preprocessing/scaling/css/css.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling/css 2024-11-18T20:30:16,603 copying build/lib/biofit/preprocessing/scaling/scaling.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/scaling 2024-11-18T20:30:16,605 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/resampling 2024-11-18T20:30:16,607 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:16,608 copying build/lib/biofit/preprocessing/resampling/upsampling/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:16,610 copying build/lib/biofit/preprocessing/resampling/upsampling/upsampling.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/resampling/upsampling 2024-11-18T20:30:16,613 copying build/lib/biofit/preprocessing/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/resampling 2024-11-18T20:30:16,615 copying build/lib/biofit/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/resampling 2024-11-18T20:30:16,618 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/imputation 2024-11-18T20:30:16,620 copying build/lib/biofit/preprocessing/imputation/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/imputation 2024-11-18T20:30:16,622 copying build/lib/biofit/preprocessing/imputation/imputation.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/imputation 2024-11-18T20:30:16,625 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/transformation 2024-11-18T20:30:16,626 copying build/lib/biofit/preprocessing/transformation/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/transformation 2024-11-18T20:30:16,629 copying build/lib/biofit/preprocessing/transformation/transformation.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/transformation 2024-11-18T20:30:16,632 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/transformation/log 2024-11-18T20:30:16,633 copying build/lib/biofit/preprocessing/transformation/log/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/transformation/log 2024-11-18T20:30:16,635 copying build/lib/biofit/preprocessing/transformation/log/log.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/transformation/log 2024-11-18T20:30:16,638 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_selection 2024-11-18T20:30:16,639 copying build/lib/biofit/preprocessing/feature_selection/plot_feature_selection.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection 2024-11-18T20:30:16,641 copying build/lib/biofit/preprocessing/feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection 2024-11-18T20:30:16,643 copying build/lib/biofit/preprocessing/feature_selection/plot_feature_selection.R -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection 2024-11-18T20:30:16,646 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:16,647 copying build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/plot_min_prevalence_feature_selector.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:16,650 copying build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:16,651 copying build/lib/biofit/preprocessing/feature_selection/min_prevalence_feature_selector/min_prevalence_feature_selector.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection/min_prevalence_feature_selector 2024-11-18T20:30:16,654 copying build/lib/biofit/preprocessing/feature_selection/feature_selection.py -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection 2024-11-18T20:30:16,657 creating build/bdist.linux-armv7l/wheel/biofit/preprocessing/feature_selection/rfe 2024-11-18T20:30:16,658 copying build/lib/biofit/preprocessing/feature_selection/rfe/plot_rfe.R -> build/bdist.linux-armv7l/wheel/./biofit/preprocessing/feature_selection/rfe 2024-11-18T20:30:16,661 copying build/lib/biofit/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,663 creating build/bdist.linux-armv7l/wheel/biofit/metrics 2024-11-18T20:30:16,665 copying build/lib/biofit/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/metrics 2024-11-18T20:30:16,667 copying build/lib/biofit/metrics/metrics.py -> build/bdist.linux-armv7l/wheel/./biofit/metrics 2024-11-18T20:30:16,670 creating build/bdist.linux-armv7l/wheel/biofit/integration 2024-11-18T20:30:16,671 copying build/lib/biofit/integration/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/integration 2024-11-18T20:30:16,673 copying build/lib/biofit/integration/biosets.py -> build/bdist.linux-armv7l/wheel/./biofit/integration 2024-11-18T20:30:16,675 creating build/bdist.linux-armv7l/wheel/biofit/integration/R 2024-11-18T20:30:16,676 copying build/lib/biofit/integration/R/r_caller.py -> build/bdist.linux-armv7l/wheel/./biofit/integration/R 2024-11-18T20:30:16,679 copying build/lib/biofit/integration/R/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/integration/R 2024-11-18T20:30:16,682 creating build/bdist.linux-armv7l/wheel/biofit/integration/R/scripts 2024-11-18T20:30:16,683 copying build/lib/biofit/integration/R/scripts/utils.R -> build/bdist.linux-armv7l/wheel/./biofit/integration/R/scripts 2024-11-18T20:30:16,685 copying build/lib/biofit/integration/R/scripts/analysis_utils.R -> build/bdist.linux-armv7l/wheel/./biofit/integration/R/scripts 2024-11-18T20:30:16,688 copying build/lib/biofit/integration/R/scripts/dependencies.R -> build/bdist.linux-armv7l/wheel/./biofit/integration/R/scripts 2024-11-18T20:30:16,690 copying build/lib/biofit/integration/R/scripts/plotting_utils.R -> build/bdist.linux-armv7l/wheel/./biofit/integration/R/scripts 2024-11-18T20:30:16,693 copying build/lib/biofit/train.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,696 creating build/bdist.linux-armv7l/wheel/biofit/utils 2024-11-18T20:30:16,697 copying build/lib/biofit/utils/version.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,699 copying build/lib/biofit/utils/recorder.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,701 copying build/lib/biofit/utils/fingerprint.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,704 copying build/lib/biofit/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,706 copying build/lib/biofit/utils/generic.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,709 copying build/lib/biofit/utils/logging.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,711 copying build/lib/biofit/utils/table_util.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,714 copying build/lib/biofit/utils/types.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,715 copying build/lib/biofit/utils/py_util.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,718 copying build/lib/biofit/utils/gorilla.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,721 copying build/lib/biofit/utils/doc.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,724 copying build/lib/biofit/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,726 copying build/lib/biofit/utils/_dill.py -> build/bdist.linux-armv7l/wheel/./biofit/utils 2024-11-18T20:30:16,729 copying build/lib/biofit/exceptions.py -> build/bdist.linux-armv7l/wheel/./biofit 2024-11-18T20:30:16,731 running install_egg_info 2024-11-18T20:30:16,765 Copying src/biofit.egg-info to build/bdist.linux-armv7l/wheel/./biofit-0.0.1-py3.11.egg-info 2024-11-18T20:30:16,780 running install_scripts 2024-11-18T20:30:16,816 creating build/bdist.linux-armv7l/wheel/biofit-0.0.1.dist-info/WHEEL 2024-11-18T20:30:16,818 creating '/tmp/pip-wheel-_g6_4bzo/biofit-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-18T20:30:16,821 adding 'biofit/__init__.py' 2024-11-18T20:30:16,822 adding 'biofit/__main__.py' 2024-11-18T20:30:16,823 adding 'biofit/config.py' 2024-11-18T20:30:16,826 adding 'biofit/eval.py' 2024-11-18T20:30:16,827 adding 'biofit/exceptions.py' 2024-11-18T20:30:16,842 adding 'biofit/processing.py' 2024-11-18T20:30:16,845 adding 'biofit/train.py' 2024-11-18T20:30:16,851 adding 'biofit/train_eval_utils.py' 2024-11-18T20:30:16,854 adding 'biofit/auto/__init__.py' 2024-11-18T20:30:16,855 adding 'biofit/auto/auto_factory.py' 2024-11-18T20:30:16,859 adding 'biofit/auto/configuration_auto.py' 2024-11-18T20:30:16,861 adding 'biofit/auto/modeling_auto.py' 2024-11-18T20:30:16,862 adding 'biofit/auto/plotting_auto.py' 2024-11-18T20:30:16,863 adding 'biofit/auto/processing_auto.py' 2024-11-18T20:30:16,865 adding 'biofit/cli/__init__.py' 2024-11-18T20:30:16,866 adding 'biofit/cli/install_r.py' 2024-11-18T20:30:16,868 adding 'biofit/cli/main.py' 2024-11-18T20:30:16,869 adding 'biofit/integration/__init__.py' 2024-11-18T20:30:16,870 adding 'biofit/integration/biosets.py' 2024-11-18T20:30:16,872 adding 'biofit/integration/R/__init__.py' 2024-11-18T20:30:16,875 adding 'biofit/integration/R/r_caller.py' 2024-11-18T20:30:16,878 adding 'biofit/integration/R/scripts/analysis_utils.R' 2024-11-18T20:30:16,879 adding 'biofit/integration/R/scripts/dependencies.R' 2024-11-18T20:30:16,883 adding 'biofit/integration/R/scripts/plotting_utils.R' 2024-11-18T20:30:16,885 adding 'biofit/integration/R/scripts/utils.R' 2024-11-18T20:30:16,887 adding 'biofit/metrics/__init__.py' 2024-11-18T20:30:16,889 adding 'biofit/metrics/metrics.py' 2024-11-18T20:30:16,891 adding 'biofit/models/__init__.py' 2024-11-18T20:30:16,892 adding 'biofit/models/models.py' 2024-11-18T20:30:16,894 adding 'biofit/models/ensemble/__init__.py' 2024-11-18T20:30:16,895 adding 'biofit/models/ensemble/ensemble.py' 2024-11-18T20:30:16,897 adding 'biofit/models/lasso/__init__.py' 2024-11-18T20:30:16,899 adding 'biofit/models/lasso/lasso.py' 2024-11-18T20:30:16,900 adding 'biofit/models/lightgbm/__init__.py' 2024-11-18T20:30:16,902 adding 'biofit/models/lightgbm/lightgbm.py' 2024-11-18T20:30:16,904 adding 'biofit/models/logistic_regression/__init__.py' 2024-11-18T20:30:16,906 adding 'biofit/models/logistic_regression/logistic_regression.py' 2024-11-18T20:30:16,907 adding 'biofit/models/random_forest/__init__.py' 2024-11-18T20:30:16,909 adding 'biofit/models/random_forest/random_forest.py' 2024-11-18T20:30:16,911 adding 'biofit/preprocessing/__init__.py' 2024-11-18T20:30:16,912 adding 'biofit/preprocessing/encoding/__init__.py' 2024-11-18T20:30:16,914 adding 'biofit/preprocessing/encoding/encoding.py' 2024-11-18T20:30:16,915 adding 'biofit/preprocessing/encoding/label_binarizing/__init__.py' 2024-11-18T20:30:16,917 adding 'biofit/preprocessing/encoding/label_binarizing/label_binarizing.py' 2024-11-18T20:30:16,919 adding 'biofit/preprocessing/encoding/label_encoding/__init__.py' 2024-11-18T20:30:16,920 adding 'biofit/preprocessing/encoding/label_encoding/label_encoding.py' 2024-11-18T20:30:16,922 adding 'biofit/preprocessing/feature_extraction/__init__.py' 2024-11-18T20:30:16,923 adding 'biofit/preprocessing/feature_extraction/feature_extraction.py' 2024-11-18T20:30:16,924 adding 'biofit/preprocessing/feature_extraction/plot_feature_extraction.py' 2024-11-18T20:30:16,926 adding 'biofit/preprocessing/feature_extraction/pca/__init__.py' 2024-11-18T20:30:16,928 adding 'biofit/preprocessing/feature_extraction/pca/pca.py' 2024-11-18T20:30:16,929 adding 'biofit/preprocessing/feature_extraction/pca/plot_pca.py' 2024-11-18T20:30:16,931 adding 'biofit/preprocessing/feature_extraction/pcoa/__init__.py' 2024-11-18T20:30:16,933 adding 'biofit/preprocessing/feature_extraction/pcoa/pcoa.py' 2024-11-18T20:30:16,934 adding 'biofit/preprocessing/feature_extraction/pcoa/plot_pcoa.py' 2024-11-18T20:30:16,936 adding 'biofit/preprocessing/feature_selection/__init__.py' 2024-11-18T20:30:16,938 adding 'biofit/preprocessing/feature_selection/feature_selection.py' 2024-11-18T20:30:16,939 adding 'biofit/preprocessing/feature_selection/plot_feature_selection.R' 2024-11-18T20:30:16,940 adding 'biofit/preprocessing/feature_selection/plot_feature_selection.py' 2024-11-18T20:30:16,942 adding 'biofit/preprocessing/feature_selection/min_prevalence_feature_selector/__init__.py' 2024-11-18T20:30:16,944 adding 'biofit/preprocessing/feature_selection/min_prevalence_feature_selector/min_prevalence_feature_selector.py' 2024-11-18T20:30:16,946 adding 'biofit/preprocessing/feature_selection/min_prevalence_feature_selector/plot_min_prevalence_feature_selector.py' 2024-11-18T20:30:16,947 adding 'biofit/preprocessing/feature_selection/rfe/plot_rfe.R' 2024-11-18T20:30:16,949 adding 'biofit/preprocessing/filtering/__init__.py' 2024-11-18T20:30:16,951 adding 'biofit/preprocessing/filtering/filtering.py' 2024-11-18T20:30:16,952 adding 'biofit/preprocessing/filtering/plot_filtering.R' 2024-11-18T20:30:16,953 adding 'biofit/preprocessing/filtering/plot_filtering.py' 2024-11-18T20:30:16,955 adding 'biofit/preprocessing/filtering/min_prevalence_sample_filter/__init__.py' 2024-11-18T20:30:16,957 adding 'biofit/preprocessing/filtering/min_prevalence_sample_filter/min_prevalence_sample_filter.py' 2024-11-18T20:30:16,959 adding 'biofit/preprocessing/filtering/min_prevalence_sample_filter/plot_min_prevalence_sample_filter.py' 2024-11-18T20:30:16,960 adding 'biofit/preprocessing/filtering/missing_labels/__init__.py' 2024-11-18T20:30:16,962 adding 'biofit/preprocessing/filtering/missing_labels/missing_labels.py' 2024-11-18T20:30:16,963 adding 'biofit/preprocessing/filtering/row_abundance/__init__.py' 2024-11-18T20:30:16,965 adding 'biofit/preprocessing/filtering/row_abundance/plot_row_abundance.py' 2024-11-18T20:30:16,967 adding 'biofit/preprocessing/filtering/row_abundance/row_abundance.py' 2024-11-18T20:30:16,968 adding 'biofit/preprocessing/imputation/__init__.py' 2024-11-18T20:30:16,969 adding 'biofit/preprocessing/imputation/imputation.py' 2024-11-18T20:30:16,971 adding 'biofit/preprocessing/resampling/__init__.py' 2024-11-18T20:30:16,972 adding 'biofit/preprocessing/resampling/resampling.py' 2024-11-18T20:30:16,974 adding 'biofit/preprocessing/resampling/upsampling/__init__.py' 2024-11-18T20:30:16,976 adding 'biofit/preprocessing/resampling/upsampling/upsampling.py' 2024-11-18T20:30:16,978 adding 'biofit/preprocessing/scaling/__init__.py' 2024-11-18T20:30:16,979 adding 'biofit/preprocessing/scaling/plot_scaling.R' 2024-11-18T20:30:16,980 adding 'biofit/preprocessing/scaling/plot_scaling.py' 2024-11-18T20:30:16,981 adding 'biofit/preprocessing/scaling/scaling.py' 2024-11-18T20:30:16,983 adding 'biofit/preprocessing/scaling/clr/__init__.py' 2024-11-18T20:30:16,984 adding 'biofit/preprocessing/scaling/clr/clr.py' 2024-11-18T20:30:16,986 adding 'biofit/preprocessing/scaling/css/__init__.py' 2024-11-18T20:30:16,988 adding 'biofit/preprocessing/scaling/css/css.py' 2024-11-18T20:30:16,990 adding 'biofit/preprocessing/scaling/css/plot_css.py' 2024-11-18T20:30:16,991 adding 'biofit/preprocessing/scaling/relative_abundance/__init__.py' 2024-11-18T20:30:16,993 adding 'biofit/preprocessing/scaling/relative_abundance/plot_relative_abundance.py' 2024-11-18T20:30:16,994 adding 'biofit/preprocessing/scaling/relative_abundance/relative_abundance.py' 2024-11-18T20:30:16,996 adding 'biofit/preprocessing/scaling/tmm/__init__.py' 2024-11-18T20:30:16,997 adding 'biofit/preprocessing/scaling/tmm/tmm.R' 2024-11-18T20:30:16,999 adding 'biofit/preprocessing/scaling/tmm/tmm.py' 2024-11-18T20:30:17,001 adding 'biofit/preprocessing/transformation/__init__.py' 2024-11-18T20:30:17,002 adding 'biofit/preprocessing/transformation/transformation.py' 2024-11-18T20:30:17,004 adding 'biofit/preprocessing/transformation/log/__init__.py' 2024-11-18T20:30:17,005 adding 'biofit/preprocessing/transformation/log/log.py' 2024-11-18T20:30:17,007 adding 'biofit/stat/__init__.py' 2024-11-18T20:30:17,008 adding 'biofit/stat/stat.py' 2024-11-18T20:30:17,010 adding 'biofit/stat/col_mean/__init__.py' 2024-11-18T20:30:17,011 adding 'biofit/stat/col_mean/col_mean.py' 2024-11-18T20:30:17,013 adding 'biofit/stat/col_missingness/__init__.py' 2024-11-18T20:30:17,015 adding 'biofit/stat/col_missingness/col_missingness.py' 2024-11-18T20:30:17,016 adding 'biofit/stat/col_sum/__init__.py' 2024-11-18T20:30:17,018 adding 'biofit/stat/col_sum/col_sum.py' 2024-11-18T20:30:17,020 adding 'biofit/stat/correlation/__init__.py' 2024-11-18T20:30:17,021 adding 'biofit/stat/correlation/correlation.py' 2024-11-18T20:30:17,022 adding 'biofit/stat/distance/__init__.py' 2024-11-18T20:30:17,024 adding 'biofit/stat/distance/distance.py' 2024-11-18T20:30:17,026 adding 'biofit/stat/row_mean/__init__.py' 2024-11-18T20:30:17,027 adding 'biofit/stat/row_mean/row_mean.py' 2024-11-18T20:30:17,028 adding 'biofit/stat/row_missingness/__init__.py' 2024-11-18T20:30:17,030 adding 'biofit/stat/row_missingness/row_missingness.py' 2024-11-18T20:30:17,032 adding 'biofit/stat/row_sum/__init__.py' 2024-11-18T20:30:17,033 adding 'biofit/stat/row_sum/row_sum.py' 2024-11-18T20:30:17,034 adding 'biofit/stat/summary/__init__.py' 2024-11-18T20:30:17,035 adding 'biofit/stat/summary/summary.py' 2024-11-18T20:30:17,037 adding 'biofit/utils/__init__.py' 2024-11-18T20:30:17,039 adding 'biofit/utils/_dill.py' 2024-11-18T20:30:17,043 adding 'biofit/utils/doc.py' 2024-11-18T20:30:17,045 adding 'biofit/utils/file_utils.py' 2024-11-18T20:30:17,047 adding 'biofit/utils/fingerprint.py' 2024-11-18T20:30:17,049 adding 'biofit/utils/generic.py' 2024-11-18T20:30:17,053 adding 'biofit/utils/gorilla.py' 2024-11-18T20:30:17,055 adding 'biofit/utils/logging.py' 2024-11-18T20:30:17,057 adding 'biofit/utils/py_util.py' 2024-11-18T20:30:17,058 adding 'biofit/utils/recorder.py' 2024-11-18T20:30:17,062 adding 'biofit/utils/table_util.py' 2024-11-18T20:30:17,063 adding 'biofit/utils/types.py' 2024-11-18T20:30:17,064 adding 'biofit/utils/version.py' 2024-11-18T20:30:17,066 adding 'biofit/visualization/__init__.py' 2024-11-18T20:30:17,068 adding 'biofit/visualization/barplot.py' 2024-11-18T20:30:17,070 adding 'biofit/visualization/dimension_reduction.py' 2024-11-18T20:30:17,072 adding 'biofit/visualization/feature_importance.py' 2024-11-18T20:30:17,074 adding 'biofit/visualization/histogram.py' 2024-11-18T20:30:17,075 adding 'biofit/visualization/plot_feature_importance.R' 2024-11-18T20:30:17,077 adding 'biofit/visualization/plot_sample_metadata.R' 2024-11-18T20:30:17,079 adding 'biofit/visualization/plotting.py' 2024-11-18T20:30:17,082 adding 'biofit/visualization/plotting_utils.py' 2024-11-18T20:30:17,083 adding 'biofit/visualization/report_generation.py' 2024-11-18T20:30:17,085 adding 'biofit/visualization/sample_metadata.py' 2024-11-18T20:30:17,086 adding 'biofit/visualization/scatterplot.py' 2024-11-18T20:30:17,088 adding 'biofit/visualization/violin.py' 2024-11-18T20:30:17,091 adding 'biofit-0.0.1.dist-info/LICENSE' 2024-11-18T20:30:17,093 adding 'biofit-0.0.1.dist-info/METADATA' 2024-11-18T20:30:17,094 adding 'biofit-0.0.1.dist-info/WHEEL' 2024-11-18T20:30:17,095 adding 'biofit-0.0.1.dist-info/entry_points.txt' 2024-11-18T20:30:17,096 adding 'biofit-0.0.1.dist-info/top_level.txt' 2024-11-18T20:30:17,098 adding 'biofit-0.0.1.dist-info/RECORD' 2024-11-18T20:30:17,105 removing build/bdist.linux-armv7l/wheel 2024-11-18T20:30:17,289 Building wheel for biofit (setup.py): finished with status 'done' 2024-11-18T20:30:17,294 Created wheel for biofit: filename=biofit-0.0.1-py3-none-any.whl size=268524 sha256=c6ca4d819c168398c666d996ff720b92345144e07e776e543a164f1983c4ba21 2024-11-18T20:30:17,296 Stored in directory: /tmp/pip-ephem-wheel-cache-rwm96zv8/wheels/ff/9a/11/2c476ee4bbd4661fff24d2a2a83a863afa5a05cb3e5ce5346c 2024-11-18T20:30:17,314 Successfully built biofit 2024-11-18T20:30:17,323 Removed build tracker: '/tmp/pip-build-tracker-4dol7i9v'