2024-11-20T08:24:52,009 Created temporary directory: /tmp/pip-build-tracker-zkm6dne4 2024-11-20T08:24:52,011 Initialized build tracking at /tmp/pip-build-tracker-zkm6dne4 2024-11-20T08:24:52,011 Created build tracker: /tmp/pip-build-tracker-zkm6dne4 2024-11-20T08:24:52,012 Entered build tracker: /tmp/pip-build-tracker-zkm6dne4 2024-11-20T08:24:52,013 Created temporary directory: /tmp/pip-wheel-my0svgoy 2024-11-20T08:24:52,017 Created temporary directory: /tmp/pip-ephem-wheel-cache-5h814sgg 2024-11-20T08:24:52,061 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-20T08:24:52,064 2 location(s) to search for versions of pyloopsage: 2024-11-20T08:24:52,064 * https://pypi.org/simple/pyloopsage/ 2024-11-20T08:24:52,064 * https://www.piwheels.org/simple/pyloopsage/ 2024-11-20T08:24:52,065 Fetching project page and analyzing links: https://pypi.org/simple/pyloopsage/ 2024-11-20T08:24:52,066 Getting page https://pypi.org/simple/pyloopsage/ 2024-11-20T08:24:52,067 Found index url https://pypi.org/simple/ 2024-11-20T08:24:52,286 Fetched page https://pypi.org/simple/pyloopsage/ as application/vnd.pypi.simple.v1+json 2024-11-20T08:24:52,289 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/a2/53/c8f2f823b430a9477e549d8a7e8ab36ac976aacd58fe05f84de97db3bd8e/pyLoopSage-1.0.12-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,290 Found link https://files.pythonhosted.org/packages/06/24/b7f5b33dd6254e6c36949878606f20d09ddb3c1e0291a1cb48e2d8888ea6/pyloopsage-1.0.12.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.12 2024-11-20T08:24:52,291 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/18/43/8d63b472c98e81ae43d778d4ba563c0e0fd875dd77396857390c7cc78e00/pyLoopSage-1.0.14-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,292 Found link https://files.pythonhosted.org/packages/b1/08/a7909cae609d3b17ff3ba9084b3277a9004ec6e5e59cd02f1e87c735bc49/pyloopsage-1.0.14.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.14 2024-11-20T08:24:52,292 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/3d/9f/417d8f08f90cc93cb9b1f9aee56a42ce3d518476b0178cfc03272f1a9ba8/pyLoopSage-1.0.15-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,293 Found link https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.15 2024-11-20T08:24:52,294 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/04/b8/dbc24fbda627ea30ed6c02c0b8f839cc14ab3e569ce5217e01ef6b607fef/pyLoopSage-1.0.16-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,295 Found link https://files.pythonhosted.org/packages/f5/bd/50b332151faafc5dc5f8511ada882889b96b13ba9f5047120b2a85ecd4ad/pyloopsage-1.0.16.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.16 2024-11-20T08:24:52,296 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyloopsage/ 2024-11-20T08:24:52,297 Getting page https://www.piwheels.org/simple/pyloopsage/ 2024-11-20T08:24:52,298 Found index url https://www.piwheels.org/simple/ 2024-11-20T08:24:52,464 Fetched page https://www.piwheels.org/simple/pyloopsage/ as text/html 2024-11-20T08:24:52,466 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.15-py3-none-any.whl#sha256=48e01b2501714ecada636b1f533c03ee3ddf55d43bc374416a5c371d222135af (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,467 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.14-py3-none-any.whl#sha256=a549aad40a794a609d2c75529df7d7e2f0499307bd0dca0e6dfbcf75f495ea78 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,467 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.12-py3-none-any.whl#sha256=fdd655ad8f0fe2be4aac31401ecb52091c64e4de37eeedfa793b309191bba454 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-20T08:24:52,468 Skipping link: not a file: https://www.piwheels.org/simple/pyloopsage/ 2024-11-20T08:24:52,469 Skipping link: not a file: https://pypi.org/simple/pyloopsage/ 2024-11-20T08:24:52,489 Given no hashes to check 1 links for project 'pyloopsage': discarding no candidates 2024-11-20T08:24:52,491 Collecting pyloopsage==1.0.16 2024-11-20T08:24:52,493 Created temporary directory: /tmp/pip-unpack-hy1vk5uj 2024-11-20T08:24:52,635 Downloading pyloopsage-1.0.16.tar.gz (52 kB) 2024-11-20T08:24:52,733 Added pyloopsage==1.0.16 from https://files.pythonhosted.org/packages/f5/bd/50b332151faafc5dc5f8511ada882889b96b13ba9f5047120b2a85ecd4ad/pyloopsage-1.0.16.tar.gz to build tracker '/tmp/pip-build-tracker-zkm6dne4' 2024-11-20T08:24:52,735 Running setup.py (path:/tmp/pip-wheel-my0svgoy/pyloopsage_82dc353bf89b44cf89e229f477a4e218/setup.py) egg_info for package pyloopsage 2024-11-20T08:24:52,736 Created temporary directory: /tmp/pip-pip-egg-info-8r94lvjt 2024-11-20T08:24:52,737 Preparing metadata (setup.py): started 2024-11-20T08:24:52,738 Running command python setup.py egg_info 2024-11-20T08:24:53,876 running egg_info 2024-11-20T08:24:53,903 creating /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info 2024-11-20T08:24:53,904 writing /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/PKG-INFO 2024-11-20T08:24:53,908 writing dependency_links to /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/dependency_links.txt 2024-11-20T08:24:53,910 writing entry points to /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/entry_points.txt 2024-11-20T08:24:53,912 writing requirements to /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/requires.txt 2024-11-20T08:24:53,913 writing top-level names to /tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/top_level.txt 2024-11-20T08:24:53,915 writing manifest file '/tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/SOURCES.txt' 2024-11-20T08:24:54,004 reading manifest file '/tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/SOURCES.txt' 2024-11-20T08:24:54,005 adding license file 'LICENSE' 2024-11-20T08:24:54,008 writing manifest file '/tmp/pip-pip-egg-info-8r94lvjt/pyLoopSage.egg-info/SOURCES.txt' 2024-11-20T08:24:54,116 Preparing metadata (setup.py): finished with status 'done' 2024-11-20T08:24:54,121 Source in /tmp/pip-wheel-my0svgoy/pyloopsage_82dc353bf89b44cf89e229f477a4e218 has version 1.0.16, which satisfies requirement pyloopsage==1.0.16 from https://files.pythonhosted.org/packages/f5/bd/50b332151faafc5dc5f8511ada882889b96b13ba9f5047120b2a85ecd4ad/pyloopsage-1.0.16.tar.gz 2024-11-20T08:24:54,122 Removed pyloopsage==1.0.16 from https://files.pythonhosted.org/packages/f5/bd/50b332151faafc5dc5f8511ada882889b96b13ba9f5047120b2a85ecd4ad/pyloopsage-1.0.16.tar.gz from build tracker '/tmp/pip-build-tracker-zkm6dne4' 2024-11-20T08:24:54,131 Created temporary directory: /tmp/pip-unpack-xhzzgcew 2024-11-20T08:24:54,133 Created temporary directory: /tmp/pip-unpack-ia6vfhgn 2024-11-20T08:24:54,133 Building wheels for collected packages: pyloopsage 2024-11-20T08:24:54,138 Created temporary directory: /tmp/pip-wheel-wir3k0sb 2024-11-20T08:24:54,138 Building wheel for pyloopsage (setup.py): started 2024-11-20T08:24:54,140 Destination directory: /tmp/pip-wheel-wir3k0sb 2024-11-20T08:24:54,140 Running command python setup.py bdist_wheel 2024-11-20T08:24:55,188 running bdist_wheel 2024-11-20T08:24:55,332 running build 2024-11-20T08:24:55,332 running build_py 2024-11-20T08:24:55,368 creating build/lib/loopsage 2024-11-20T08:24:55,371 copying loopsage/preproc.py -> build/lib/loopsage 2024-11-20T08:24:55,374 copying loopsage/utils.py -> build/lib/loopsage 2024-11-20T08:24:55,377 copying loopsage/em.py -> build/lib/loopsage 2024-11-20T08:24:55,379 copying loopsage/initial_structures.py -> build/lib/loopsage 2024-11-20T08:24:55,382 copying loopsage/stochastic_simulation.py -> build/lib/loopsage 2024-11-20T08:24:55,385 copying loopsage/plots.py -> build/lib/loopsage 2024-11-20T08:24:55,388 copying loopsage/run.py -> build/lib/loopsage 2024-11-20T08:24:55,390 copying loopsage/md.py -> build/lib/loopsage 2024-11-20T08:24:55,394 copying loopsage/args_definition.py -> build/lib/loopsage 2024-11-20T08:24:55,398 copying loopsage/__init__.py -> build/lib/loopsage 2024-11-20T08:24:55,400 copying loopsage/vizualization_tools.py -> build/lib/loopsage 2024-11-20T08:24:55,403 running egg_info 2024-11-20T08:24:55,430 writing pyLoopSage.egg-info/PKG-INFO 2024-11-20T08:24:55,434 writing dependency_links to pyLoopSage.egg-info/dependency_links.txt 2024-11-20T08:24:55,436 writing entry points to pyLoopSage.egg-info/entry_points.txt 2024-11-20T08:24:55,437 writing requirements to pyLoopSage.egg-info/requires.txt 2024-11-20T08:24:55,439 writing top-level names to pyLoopSage.egg-info/top_level.txt 2024-11-20T08:24:55,473 reading manifest file 'pyLoopSage.egg-info/SOURCES.txt' 2024-11-20T08:24:55,477 adding license file 'LICENSE' 2024-11-20T08:24:55,480 writing manifest file 'pyLoopSage.egg-info/SOURCES.txt' 2024-11-20T08:24:55,482 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'loopsage.forcefields' is absent from the `packages` configuration. 2024-11-20T08:24:55,482 !! 2024-11-20T08:24:55,483 ******************************************************************************** 2024-11-20T08:24:55,484 ############################ 2024-11-20T08:24:55,484 # Package would be ignored # 2024-11-20T08:24:55,485 ############################ 2024-11-20T08:24:55,485 Python recognizes 'loopsage.forcefields' as an importable package[^1], 2024-11-20T08:24:55,486 but it is absent from setuptools' `packages` configuration. 2024-11-20T08:24:55,487 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-20T08:24:55,488 package, please make sure that 'loopsage.forcefields' is explicitly added 2024-11-20T08:24:55,488 to the `packages` configuration field. 2024-11-20T08:24:55,490 Alternatively, you can also rely on setuptools' discovery methods 2024-11-20T08:24:55,490 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-20T08:24:55,491 instead of `find_packages(...)`/`find:`). 2024-11-20T08:24:55,492 You can read more about "package discovery" on setuptools documentation page: 2024-11-20T08:24:55,493 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-20T08:24:55,494 If you don't want 'loopsage.forcefields' to be distributed and are 2024-11-20T08:24:55,495 already explicitly excluding 'loopsage.forcefields' via 2024-11-20T08:24:55,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-20T08:24:55,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-20T08:24:55,497 combination with a more fine grained `package-data` configuration. 2024-11-20T08:24:55,498 You can read more about "package data files" on setuptools documentation page: 2024-11-20T08:24:55,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-20T08:24:55,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-20T08:24:55,501 even if it does not contain any `.py` files. 2024-11-20T08:24:55,502 On the other hand, currently there is no concept of package data 2024-11-20T08:24:55,503 directory, all directories are treated like packages. 2024-11-20T08:24:55,503 ******************************************************************************** 2024-11-20T08:24:55,505 !! 2024-11-20T08:24:55,505 check.warn(importable) 2024-11-20T08:24:55,506 creating build/lib/loopsage/forcefields 2024-11-20T08:24:55,506 copying loopsage/forcefields/classic_sm_ff.xml -> build/lib/loopsage/forcefields 2024-11-20T08:24:55,520 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-20T08:24:55,520 !! 2024-11-20T08:24:55,521 ******************************************************************************** 2024-11-20T08:24:55,522 Please avoid running ``setup.py`` directly. 2024-11-20T08:24:55,522 Instead, use pypa/build, pypa/installer or other 2024-11-20T08:24:55,523 standards-based tools. 2024-11-20T08:24:55,524 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-20T08:24:55,524 ******************************************************************************** 2024-11-20T08:24:55,525 !! 2024-11-20T08:24:55,526 self.initialize_options() 2024-11-20T08:24:55,548 installing to build/bdist.linux-armv7l/wheel 2024-11-20T08:24:55,549 running install 2024-11-20T08:24:55,573 running install_lib 2024-11-20T08:24:55,600 creating build/bdist.linux-armv7l/wheel 2024-11-20T08:24:55,603 creating build/bdist.linux-armv7l/wheel/loopsage 2024-11-20T08:24:55,604 copying build/lib/loopsage/preproc.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,606 copying build/lib/loopsage/utils.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,609 copying build/lib/loopsage/em.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,611 copying build/lib/loopsage/initial_structures.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,613 copying build/lib/loopsage/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,616 copying build/lib/loopsage/plots.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,618 copying build/lib/loopsage/run.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,620 creating build/bdist.linux-armv7l/wheel/loopsage/forcefields 2024-11-20T08:24:55,621 copying build/lib/loopsage/forcefields/classic_sm_ff.xml -> build/bdist.linux-armv7l/wheel/./loopsage/forcefields 2024-11-20T08:24:55,623 copying build/lib/loopsage/md.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,625 copying build/lib/loopsage/args_definition.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,627 copying build/lib/loopsage/__init__.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,629 copying build/lib/loopsage/vizualization_tools.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-20T08:24:55,631 running install_egg_info 2024-11-20T08:24:55,666 Copying pyLoopSage.egg-info to build/bdist.linux-armv7l/wheel/./pyLoopSage-1.0.16-py3.11.egg-info 2024-11-20T08:24:55,678 running install_scripts 2024-11-20T08:24:55,698 creating build/bdist.linux-armv7l/wheel/pyLoopSage-1.0.16.dist-info/WHEEL 2024-11-20T08:24:55,700 creating '/tmp/pip-wheel-wir3k0sb/pyLoopSage-1.0.16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-20T08:24:55,703 adding 'loopsage/__init__.py' 2024-11-20T08:24:55,705 adding 'loopsage/args_definition.py' 2024-11-20T08:24:55,707 adding 'loopsage/em.py' 2024-11-20T08:24:55,708 adding 'loopsage/initial_structures.py' 2024-11-20T08:24:55,710 adding 'loopsage/md.py' 2024-11-20T08:24:55,712 adding 'loopsage/plots.py' 2024-11-20T08:24:55,714 adding 'loopsage/preproc.py' 2024-11-20T08:24:55,715 adding 'loopsage/run.py' 2024-11-20T08:24:55,718 adding 'loopsage/stochastic_simulation.py' 2024-11-20T08:24:55,720 adding 'loopsage/utils.py' 2024-11-20T08:24:55,722 adding 'loopsage/vizualization_tools.py' 2024-11-20T08:24:55,724 adding 'loopsage/forcefields/classic_sm_ff.xml' 2024-11-20T08:24:55,731 adding 'pyLoopSage-1.0.16.dist-info/LICENSE' 2024-11-20T08:24:55,734 adding 'pyLoopSage-1.0.16.dist-info/METADATA' 2024-11-20T08:24:55,735 adding 'pyLoopSage-1.0.16.dist-info/WHEEL' 2024-11-20T08:24:55,736 adding 'pyLoopSage-1.0.16.dist-info/entry_points.txt' 2024-11-20T08:24:55,737 adding 'pyLoopSage-1.0.16.dist-info/top_level.txt' 2024-11-20T08:24:55,738 adding 'pyLoopSage-1.0.16.dist-info/RECORD' 2024-11-20T08:24:55,740 removing build/bdist.linux-armv7l/wheel 2024-11-20T08:24:55,855 Building wheel for pyloopsage (setup.py): finished with status 'done' 2024-11-20T08:24:55,858 Created wheel for pyloopsage: filename=pyLoopSage-1.0.16-py3-none-any.whl size=50827 sha256=b91f8c9389d9958394c84184b1373a01557822f205ad93a5f2220ca7e7ccd215 2024-11-20T08:24:55,859 Stored in directory: /tmp/pip-ephem-wheel-cache-5h814sgg/wheels/e6/17/4d/02cb1100fa7eff0909c82e304157799d62cbf5a2088eba24a9 2024-11-20T08:24:55,873 Successfully built pyloopsage 2024-11-20T08:24:55,878 Removed build tracker: '/tmp/pip-build-tracker-zkm6dne4'