2024-11-20T09:27:40,291 Created temporary directory: /tmp/pip-build-tracker-iwezdezf 2024-11-20T09:27:40,293 Initialized build tracking at /tmp/pip-build-tracker-iwezdezf 2024-11-20T09:27:40,293 Created build tracker: /tmp/pip-build-tracker-iwezdezf 2024-11-20T09:27:40,293 Entered build tracker: /tmp/pip-build-tracker-iwezdezf 2024-11-20T09:27:40,294 Created temporary directory: /tmp/pip-wheel-hgf9fpn3 2024-11-20T09:27:40,298 Created temporary directory: /tmp/pip-ephem-wheel-cache-a_gzi0z_ 2024-11-20T09:27:40,345 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-20T09:27:40,348 2 location(s) to search for versions of kssdutils: 2024-11-20T09:27:40,348 * https://pypi.org/simple/kssdutils/ 2024-11-20T09:27:40,348 * https://www.piwheels.org/simple/kssdutils/ 2024-11-20T09:27:40,349 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2024-11-20T09:27:40,349 Getting page https://pypi.org/simple/kssdutils/ 2024-11-20T09:27:40,351 Found index url https://pypi.org/simple/ 2024-11-20T09:27:40,571 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2024-11-20T09:27:40,573 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2024-11-20T09:27:40,573 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2024-11-20T09:27:40,574 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2024-11-20T09:27:40,575 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2024-11-20T09:27:40,575 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2024-11-20T09:27:40,576 Getting page https://www.piwheels.org/simple/kssdutils/ 2024-11-20T09:27:40,578 Found index url https://www.piwheels.org/simple/ 2024-11-20T09:27:40,746 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2024-11-20T09:27:40,750 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,750 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,751 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,752 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,752 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,753 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,753 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,754 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-11-20T09:27:40,755 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2024-11-20T09:27:40,755 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2024-11-20T09:27:40,774 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2024-11-20T09:27:40,776 Collecting kssdutils==1.0.2 2024-11-20T09:27:40,778 Created temporary directory: /tmp/pip-unpack-qhnvojkl 2024-11-20T09:27:40,994 Downloading kssdutils-1.0.2.tar.gz (44 kB) 2024-11-20T09:27:41,092 Added kssdutils==1.0.2 from https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-iwezdezf' 2024-11-20T09:27:41,095 Running setup.py (path:/tmp/pip-wheel-hgf9fpn3/kssdutils_799dd4c15a314ef7a3bf45f5f7069de0/setup.py) egg_info for package kssdutils 2024-11-20T09:27:41,095 Created temporary directory: /tmp/pip-pip-egg-info-oru_otnd 2024-11-20T09:27:41,096 Preparing metadata (setup.py): started 2024-11-20T09:27:41,097 Running command python setup.py egg_info 2024-11-20T09:27:42,190 running egg_info 2024-11-20T09:27:42,446 creating /tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info 2024-11-20T09:27:42,447 writing /tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/PKG-INFO 2024-11-20T09:27:42,451 writing dependency_links to /tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/dependency_links.txt 2024-11-20T09:27:42,453 writing top-level names to /tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/top_level.txt 2024-11-20T09:27:42,455 writing manifest file '/tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/SOURCES.txt' 2024-11-20T09:27:43,540 reading manifest file '/tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/SOURCES.txt' 2024-11-20T09:27:43,543 reading manifest template 'MANIFEST.in' 2024-11-20T09:27:43,553 warning: no files found matching '*.h' under directory 'njheaders' 2024-11-20T09:27:43,554 warning: no files found matching '*.h' under directory 'dnjheaders' 2024-11-20T09:27:43,561 writing manifest file '/tmp/pip-pip-egg-info-oru_otnd/kssdutils.egg-info/SOURCES.txt' 2024-11-20T09:27:43,700 Preparing metadata (setup.py): finished with status 'done' 2024-11-20T09:27:43,703 Source in /tmp/pip-wheel-hgf9fpn3/kssdutils_799dd4c15a314ef7a3bf45f5f7069de0 has version 1.0.2, which satisfies requirement kssdutils==1.0.2 from https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz 2024-11-20T09:27:43,704 Removed kssdutils==1.0.2 from https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-iwezdezf' 2024-11-20T09:27:43,708 Created temporary directory: /tmp/pip-unpack-j6847rgj 2024-11-20T09:27:43,709 Created temporary directory: /tmp/pip-unpack-g4eb6_i6 2024-11-20T09:27:43,710 Building wheels for collected packages: kssdutils 2024-11-20T09:27:43,714 Created temporary directory: /tmp/pip-wheel-3cz6qdns 2024-11-20T09:27:43,715 Building wheel for kssdutils (setup.py): started 2024-11-20T09:27:43,716 Destination directory: /tmp/pip-wheel-3cz6qdns 2024-11-20T09:27:43,716 Running command python setup.py bdist_wheel 2024-11-20T09:27:44,949 running bdist_wheel 2024-11-20T09:27:45,083 running build 2024-11-20T09:27:45,084 running build_py 2024-11-20T09:27:45,113 creating build/lib.linux-armv7l-cpython-311 2024-11-20T09:27:45,114 copying kssdutils.py -> build/lib.linux-armv7l-cpython-311 2024-11-20T09:27:45,117 running egg_info 2024-11-20T09:27:45,145 writing kssdutils.egg-info/PKG-INFO 2024-11-20T09:27:45,147 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2024-11-20T09:27:45,149 writing top-level names to kssdutils.egg-info/top_level.txt 2024-11-20T09:27:45,178 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-11-20T09:27:45,181 reading manifest template 'MANIFEST.in' 2024-11-20T09:27:45,187 warning: no files found matching '*.h' under directory 'njheaders' 2024-11-20T09:27:45,187 warning: no files found matching '*.h' under directory 'dnjheaders' 2024-11-20T09:27:45,190 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-11-20T09:27:45,192 running build_ext 2024-11-20T09:27:45,819 building 'kssd' extension 2024-11-20T09:27:45,820 creating build/temp.linux-armv7l-cpython-311 2024-11-20T09:27:45,823 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-11-20T09:27:46,092 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-11-20T09:27:46,093 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-11-20T09:27:46,093 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-11-20T09:27:46,094 | ^ 2024-11-20T09:27:46,096 co2mco.c: In function ‘co2unitllmco’: 2024-11-20T09:27:46,097 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-11-20T09:27:46,097 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-11-20T09:27:46,098 | ^ 2024-11-20T09:27:46,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-11-20T09:27:47,185 command_composite.c: In function ‘get_species_abundance’: 2024-11-20T09:27:47,186 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-11-20T09:27:47,187 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-11-20T09:27:47,187 | ^~ 2024-11-20T09:27:47,188 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-11-20T09:27:47,188 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-11-20T09:27:47,189 | ^~ 2024-11-20T09:27:47,190 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:47,190 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-11-20T09:27:47,191 | ^ 2024-11-20T09:27:47,191 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:47,192 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-11-20T09:27:47,193 | ^~~~~~~~~~ 2024-11-20T09:27:47,194 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-11-20T09:27:47,194 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-11-20T09:27:47,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,196 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:47,197 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-11-20T09:27:47,197 | ^ 2024-11-20T09:27:47,198 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:47,198 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-11-20T09:27:47,199 | ^~~~~~~~~~ 2024-11-20T09:27:47,199 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-11-20T09:27:47,200 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-11-20T09:27:47,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,201 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:47,201 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,202 | ^ 2024-11-20T09:27:47,203 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:47,203 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,204 | ^~~~~~~~~~ 2024-11-20T09:27:47,204 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-11-20T09:27:47,205 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,206 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,206 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:47,207 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-11-20T09:27:47,208 | ^ 2024-11-20T09:27:47,208 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:47,209 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-11-20T09:27:47,210 | ^~~~~~~~~~ 2024-11-20T09:27:47,210 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-11-20T09:27:47,211 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-11-20T09:27:47,212 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,212 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:47,213 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,213 | ^ 2024-11-20T09:27:47,214 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:47,215 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,215 | ^~~~~~~~~~~~ 2024-11-20T09:27:47,216 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-11-20T09:27:47,216 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-11-20T09:27:47,217 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,442 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-11-20T09:27:47,704 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-11-20T09:27:47,705 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,706 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,706 | ~~^ 2024-11-20T09:27:47,707 | | 2024-11-20T09:27:47,707 | long unsigned int 2024-11-20T09:27:47,707 | %u 2024-11-20T09:27:47,708 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,708 | ~~~~~~~ 2024-11-20T09:27:47,709 | | 2024-11-20T09:27:47,709 | size_t {aka unsigned int} 2024-11-20T09:27:47,710 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,710 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,711 | ~~^ 2024-11-20T09:27:47,711 | | 2024-11-20T09:27:47,712 | long unsigned int 2024-11-20T09:27:47,713 | %u 2024-11-20T09:27:47,713 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,714 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-11-20T09:27:47,714 | ~~~~~~~~~ 2024-11-20T09:27:47,715 | | 2024-11-20T09:27:47,716 | size_t {aka unsigned int} 2024-11-20T09:27:47,716 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-11-20T09:27:47,717 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,718 | ~~^ 2024-11-20T09:27:47,718 | | 2024-11-20T09:27:47,719 | long unsigned int 2024-11-20T09:27:47,719 | %u 2024-11-20T09:27:47,720 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,720 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-11-20T09:27:47,721 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,722 | | 2024-11-20T09:27:47,722 | unsigned int 2024-11-20T09:27:47,723 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-11-20T09:27:47,724 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-11-20T09:27:47,725 | ^ 2024-11-20T09:27:47,726 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-11-20T09:27:47,728 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,728 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-11-20T09:27:47,729 | ~~^ ~~~~~~~ 2024-11-20T09:27:47,729 | | | 2024-11-20T09:27:47,729 | long unsigned int size_t {aka unsigned int} 2024-11-20T09:27:47,730 | %u 2024-11-20T09:27:47,730 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,731 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-11-20T09:27:47,731 | ~~^ 2024-11-20T09:27:47,732 | | 2024-11-20T09:27:47,732 | long unsigned int 2024-11-20T09:27:47,733 | %u 2024-11-20T09:27:47,734 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-11-20T09:27:47,734 | ~~~~~~~~~ 2024-11-20T09:27:47,735 | | 2024-11-20T09:27:47,735 | size_t {aka unsigned int} 2024-11-20T09:27:47,736 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-11-20T09:27:47,736 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-11-20T09:27:47,737 | ~~^ 2024-11-20T09:27:47,737 | | 2024-11-20T09:27:47,738 | long unsigned int 2024-11-20T09:27:47,739 | %u 2024-11-20T09:27:47,739 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-11-20T09:27:47,740 865 | (size_t) b * unitsz_distf_mapped); 2024-11-20T09:27:47,741 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,741 | | 2024-11-20T09:27:47,742 | unsigned int 2024-11-20T09:27:47,743 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-11-20T09:27:47,743 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-11-20T09:27:47,744 | ^~~~~~~ 2024-11-20T09:27:47,745 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-11-20T09:27:47,745 809 | struct stat cbd_fcode_stat; 2024-11-20T09:27:47,746 | ^~~~~~~~~~~~~~ 2024-11-20T09:27:47,746 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-11-20T09:27:47,747 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-11-20T09:27:47,747 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,747 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-11-20T09:27:47,748 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-11-20T09:27:47,748 | ^~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,749 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-11-20T09:27:47,749 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,749 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,750 | ~~^ 2024-11-20T09:27:47,750 | | 2024-11-20T09:27:47,751 | long unsigned int 2024-11-20T09:27:47,751 | %u 2024-11-20T09:27:47,752 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,752 | ~~~~~~~ 2024-11-20T09:27:47,753 | | 2024-11-20T09:27:47,753 | size_t {aka unsigned int} 2024-11-20T09:27:47,754 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:47,755 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,755 | ~~^ 2024-11-20T09:27:47,756 | | 2024-11-20T09:27:47,757 | long unsigned int 2024-11-20T09:27:47,757 | %u 2024-11-20T09:27:47,758 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,759 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-11-20T09:27:47,759 | ~~~~~~~~~ 2024-11-20T09:27:47,760 | | 2024-11-20T09:27:47,760 | size_t {aka unsigned int} 2024-11-20T09:27:47,761 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-11-20T09:27:47,762 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-11-20T09:27:47,762 | ~~^ 2024-11-20T09:27:47,763 | | 2024-11-20T09:27:47,763 | long unsigned int 2024-11-20T09:27:47,764 | %u 2024-11-20T09:27:47,765 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-11-20T09:27:47,766 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-11-20T09:27:47,766 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:47,767 | | 2024-11-20T09:27:47,767 | unsigned int 2024-11-20T09:27:47,768 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,769 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-11-20T09:27:47,770 | ^ 2024-11-20T09:27:47,770 command_dist.c: In function ‘mco_co_dist_core’: 2024-11-20T09:27:47,771 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-11-20T09:27:47,771 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-11-20T09:27:47,771 | ^ 2024-11-20T09:27:47,772 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-11-20T09:27:47,772 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,773 1239 | for (int rid = 0; rid < ref_num; rid++) 2024-11-20T09:27:47,773 | ^ 2024-11-20T09:27:47,774 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,774 1245 | for (int rid = 0; rid < ref_num; rid++) { 2024-11-20T09:27:47,775 | ^ 2024-11-20T09:27:47,780 command_dist.c: In function ‘dist_print_nobin’: 2024-11-20T09:27:47,781 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,782 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-11-20T09:27:47,782 | ^ 2024-11-20T09:27:47,784 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,785 1356 | for (int rid = 0; rid < ref_num; rid++) { 2024-11-20T09:27:47,785 | ^ 2024-11-20T09:27:47,787 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-11-20T09:27:47,787 1382 | for (int rid = 0; rid < ref_num; rid++) 2024-11-20T09:27:47,788 | ^ 2024-11-20T09:27:48,148 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-11-20T09:27:48,149 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-11-20T09:27:48,149 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-11-20T09:27:48,150 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:48,150 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2024-11-20T09:27:48,151 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-11-20T09:27:48,152 | ^~~~~~~~~~~~ 2024-11-20T09:27:48,982 command_dist.c: In function ‘get_dim_shuffle’: 2024-11-20T09:27:48,983 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-11-20T09:27:48,984 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-11-20T09:27:48,985 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:48,985 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-11-20T09:27:48,986 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-11-20T09:27:48,986 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:49,882 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-11-20T09:27:49,883 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:49,884 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:49,885 | ^~ ~~~~~~~~~ 2024-11-20T09:27:49,885 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-11-20T09:27:49,886 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:49,886 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:49,887 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:49,887 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:49,888 | ^~~~~~~~~~~~~~~ 2024-11-20T09:27:49,888 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-11-20T09:27:49,889 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:49,889 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:49,890 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:49,890 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:49,891 | ^~~~~~~~~~~ 2024-11-20T09:27:49,891 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:49,892 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:49,893 | ^~~~~~~~~~~~~~~~~ 2024-11-20T09:27:49,893 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-11-20T09:27:49,894 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:49,894 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:49,895 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:49,896 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:49,896 | ^~~~~ 2024-11-20T09:27:49,897 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:49,898 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:49,898 | ^~~~~~~~~~~ 2024-11-20T09:27:49,899 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-11-20T09:27:49,899 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:49,900 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,133 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-11-20T09:27:50,135 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:50,136 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:50,138 | ^~ ~~~~~~~~~ 2024-11-20T09:27:50,139 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-11-20T09:27:50,141 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:50,142 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,144 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,146 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:50,147 | ^~~~~~~~~~~~~~~ 2024-11-20T09:27:50,149 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-11-20T09:27:50,150 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:50,151 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,152 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,153 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-11-20T09:27:50,154 | ^~~~~~~~~~~~~ 2024-11-20T09:27:50,155 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-11-20T09:27:50,155 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-11-20T09:27:50,156 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,157 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:50,157 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-11-20T09:27:50,158 | ^ 2024-11-20T09:27:50,158 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2024-11-20T09:27:50,159 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-11-20T09:27:50,160 | ^~~~~~~~~~ 2024-11-20T09:27:50,160 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-11-20T09:27:50,161 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-11-20T09:27:50,162 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,163 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:50,163 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-11-20T09:27:50,164 | ^ 2024-11-20T09:27:50,165 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2024-11-20T09:27:50,165 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-11-20T09:27:50,166 | ^~~~~~~~~~ 2024-11-20T09:27:50,167 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-11-20T09:27:50,167 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-11-20T09:27:50,168 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,414 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-11-20T09:27:50,415 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:50,416 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:50,417 | ^~ ~~~~~~~~~ 2024-11-20T09:27:50,417 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-11-20T09:27:50,418 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-11-20T09:27:50,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,418 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,419 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:50,419 | ^~~~~~~~~~~~~~~ 2024-11-20T09:27:50,420 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-11-20T09:27:50,420 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-11-20T09:27:50,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,421 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,422 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-11-20T09:27:50,423 | ^~~~~~~~~~~~~ 2024-11-20T09:27:50,423 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-11-20T09:27:50,424 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-11-20T09:27:50,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,425 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,425 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:50,426 | ^~~~~~~~~~~ 2024-11-20T09:27:50,426 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:50,427 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:50,427 | ^~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,428 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-11-20T09:27:50,428 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-11-20T09:27:50,429 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,429 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-11-20T09:27:50,430 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:50,431 | ^~~~~ 2024-11-20T09:27:50,432 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:50,432 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:50,433 | ^~~~~~~~~~~ 2024-11-20T09:27:50,434 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-11-20T09:27:50,434 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-11-20T09:27:50,435 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,704 command_dist.c: In function ‘combine_queries’: 2024-11-20T09:27:50,705 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:50,706 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-11-20T09:27:50,706 | ^ 2024-11-20T09:27:50,707 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:50,708 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-11-20T09:27:50,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,709 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:50,709 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-11-20T09:27:50,710 | ^ 2024-11-20T09:27:50,710 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:50,711 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-11-20T09:27:50,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:50,713 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:50,714 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-11-20T09:27:50,714 | ^~ ~~~~~~~~ 2024-11-20T09:27:50,715 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-11-20T09:27:50,716 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-11-20T09:27:50,716 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,194 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-11-20T09:27:51,372 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-11-20T09:27:51,545 command_set.c: In function ‘sketch_operate’: 2024-11-20T09:27:51,546 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-11-20T09:27:51,546 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-11-20T09:27:51,547 | ^ 2024-11-20T09:27:51,558 command_set.c: In function ‘combin_subset_pans’: 2024-11-20T09:27:51,559 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-11-20T09:27:51,560 457 | free(co_dstat_fpath); 2024-11-20T09:27:51,560 | ^~~~~~~~~~~~~~ 2024-11-20T09:27:51,561 In file included from kssdheaders/global_basic.h:159, 2024-11-20T09:27:51,562 from command_set.c:15: 2024-11-20T09:27:51,562 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-11-20T09:27:51,563 568 | extern void free (void *__ptr) __THROW; 2024-11-20T09:27:51,564 | ~~~~~~^~~~~ 2024-11-20T09:27:51,566 command_set.c: In function ‘grouping_genomes’: 2024-11-20T09:27:51,566 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-11-20T09:27:51,567 562 | free(co_dstat_fpath); 2024-11-20T09:27:51,567 | ^~~~~~~~~~~~~~ 2024-11-20T09:27:51,568 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-11-20T09:27:51,569 568 | extern void free (void *__ptr) __THROW; 2024-11-20T09:27:51,570 | ~~~~~~^~~~~ 2024-11-20T09:27:51,734 command_set.c: In function ‘sketch_union’: 2024-11-20T09:27:51,735 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:51,735 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:51,736 | ^ 2024-11-20T09:27:51,736 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:51,737 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:51,738 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,738 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,739 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:51,739 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:51,740 command_set.c:82:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,740 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:51,741 | ^~~~~~~~~~ 2024-11-20T09:27:51,741 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:51,742 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:51,743 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,743 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,744 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-11-20T09:27:51,745 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:51,745 command_set.c:92:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,746 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-11-20T09:27:51,747 | ^~~~~~~~~~ 2024-11-20T09:27:51,747 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-11-20T09:27:51,748 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-11-20T09:27:51,748 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,865 command_set.c: In function ‘sketch_operate’: 2024-11-20T09:27:51,866 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,867 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-11-20T09:27:51,867 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:51,868 command_set.c:153:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,868 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-11-20T09:27:51,869 | ^~~~~~~~~~ 2024-11-20T09:27:51,869 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-11-20T09:27:51,870 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-11-20T09:27:51,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,872 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,872 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-11-20T09:27:51,873 | ^~ ~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,874 command_set.c:155:29: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,875 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-11-20T09:27:51,875 | ^~~~~~~~~~ 2024-11-20T09:27:51,876 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-11-20T09:27:51,876 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-11-20T09:27:51,877 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,877 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,878 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,878 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:51,879 command_set.c:165:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,879 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,880 | ^~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,881 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:51,881 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,882 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,882 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,883 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,883 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:51,884 command_set.c:169:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,885 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,886 | ^~~~~~~~~~ 2024-11-20T09:27:51,886 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:51,887 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-11-20T09:27:51,887 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,888 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,889 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,889 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:51,890 command_set.c:174:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,890 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,891 | ^~~~~~~~~~ 2024-11-20T09:27:51,892 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:51,892 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,893 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,894 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:51,894 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,895 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:51,896 command_set.c:187:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:51,896 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,897 | ^~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,898 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:51,898 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-11-20T09:27:51,899 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:51,899 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:51,900 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:51,900 | ^ 2024-11-20T09:27:51,901 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:51,902 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:51,902 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,040 command_set.c: In function ‘uniq_sketch_union’: 2024-11-20T09:27:52,040 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:52,041 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-11-20T09:27:52,041 | ^ 2024-11-20T09:27:52,042 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-11-20T09:27:52,042 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-11-20T09:27:52,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,044 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:52,044 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,045 | ^ 2024-11-20T09:27:52,046 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:52,046 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,047 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,048 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,049 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:52,049 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,050 command_set.c:247:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,051 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:52,051 | ^~~~~~~~~~ 2024-11-20T09:27:52,052 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:52,052 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-11-20T09:27:52,053 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,054 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,054 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-11-20T09:27:52,055 | ^~ ~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,056 command_set.c:259:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,057 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-11-20T09:27:52,057 | ^~~~~~~~~~ 2024-11-20T09:27:52,058 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-11-20T09:27:52,059 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-11-20T09:27:52,059 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,187 command_set.c: In function ‘combin_pans’: 2024-11-20T09:27:52,187 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,188 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,188 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,189 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2024-11-20T09:27:52,190 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,190 | ^~~~~~~~~~ 2024-11-20T09:27:52,191 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-11-20T09:27:52,191 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,192 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,193 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,193 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,194 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:52,195 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2024-11-20T09:27:52,196 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,197 | ^~~~~~~~~~ 2024-11-20T09:27:52,198 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-11-20T09:27:52,198 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,200 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:52,200 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,201 | ^ 2024-11-20T09:27:52,202 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:52,202 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,203 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,404 command_set.c: In function ‘combin_subset_pans’: 2024-11-20T09:27:52,405 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,406 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,406 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,407 command_set.c:469:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,407 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,408 | ^~~~~~~~~~ 2024-11-20T09:27:52,408 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:52,409 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,410 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,410 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,411 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,412 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:52,412 command_set.c:475:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,413 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,413 | ^~~~~~~~~~ 2024-11-20T09:27:52,414 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:52,414 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,415 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,416 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,417 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,417 command_set.c:481:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,418 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,418 | ^~~~~~~~~~ 2024-11-20T09:27:52,419 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:52,419 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,420 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,421 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,421 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,422 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:52,422 command_set.c:512:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,423 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,424 | ^~~~~~~~~~ 2024-11-20T09:27:52,424 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:52,425 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,426 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,427 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:52,427 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,428 | ^ 2024-11-20T09:27:52,429 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:52,429 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,430 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,650 command_set.c: In function ‘grouping_genomes’: 2024-11-20T09:27:52,651 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,652 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,652 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,653 command_set.c:574:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,654 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,654 | ^~~~~~~~~~ 2024-11-20T09:27:52,655 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:52,656 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-11-20T09:27:52,656 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,657 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,657 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,658 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:52,658 command_set.c:580:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,659 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,659 | ^~~~~~~~~~ 2024-11-20T09:27:52,659 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:52,660 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-11-20T09:27:52,660 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,661 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,661 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,662 | ^~ ~~~~~~~~~~~ 2024-11-20T09:27:52,662 command_set.c:612:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,663 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,663 | ^~~~~~~~~~ 2024-11-20T09:27:52,664 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-11-20T09:27:52,665 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-11-20T09:27:52,665 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,666 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-11-20T09:27:52,667 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,667 | ^~ ~~~~~~~~~~ 2024-11-20T09:27:52,668 command_set.c:634:25: note: directive argument in the range [-2147483644, 2147483646] 2024-11-20T09:27:52,669 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,669 | ^~~~~~~~~~ 2024-11-20T09:27:52,670 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-11-20T09:27:52,670 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-11-20T09:27:52,671 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,672 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-11-20T09:27:52,672 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,673 | ^ 2024-11-20T09:27:52,673 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-11-20T09:27:52,674 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-11-20T09:27:52,675 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-20T09:27:52,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-11-20T09:27:53,259 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-11-20T09:27:53,432 global_basic.c: In function ‘organize_infile_list’: 2024-11-20T09:27:53,433 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-11-20T09:27:53,433 195 | while (isspace(*buf)) buf++; 2024-11-20T09:27:53,434 | ^~~~~~~ 2024-11-20T09:27:53,435 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-11-20T09:27:53,436 34 | #include 2024-11-20T09:27:53,437 +++ |+#include 2024-11-20T09:27:53,437 35 | 2024-11-20T09:27:53,438 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:53,439 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-11-20T09:27:53,439 | ~~^ 2024-11-20T09:27:53,440 | | 2024-11-20T09:27:53,440 | long unsigned int 2024-11-20T09:27:53,441 | %u 2024-11-20T09:27:53,442 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-11-20T09:27:53,442 | ~~~~~~~~~~~ 2024-11-20T09:27:53,443 | | 2024-11-20T09:27:53,444 | size_t {aka unsigned int} 2024-11-20T09:27:53,445 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-11-20T09:27:53,446 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-11-20T09:27:53,447 | ~~^ 2024-11-20T09:27:53,447 | | 2024-11-20T09:27:53,448 | long unsigned int 2024-11-20T09:27:53,449 | %u 2024-11-20T09:27:53,449 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-11-20T09:27:53,450 | ~~~~~~~~~~~ 2024-11-20T09:27:53,451 | | 2024-11-20T09:27:53,451 | size_t {aka unsigned int} 2024-11-20T09:27:54,194 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-11-20T09:27:54,371 iseq2comem.c: In function ‘reads2mco’: 2024-11-20T09:27:54,371 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,372 156 | if (base > TL) { 2024-11-20T09:27:54,373 | ^ 2024-11-20T09:27:54,374 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,374 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,375 | ^~ 2024-11-20T09:27:54,375 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,376 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,376 | ^ 2024-11-20T09:27:54,377 iseq2comem.c: In function ‘fasta2co’: 2024-11-20T09:27:54,377 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,378 239 | if (base > TL) { 2024-11-20T09:27:54,379 | ^ 2024-11-20T09:27:54,380 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,380 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,381 | ^~ 2024-11-20T09:27:54,381 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,382 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,382 | ^ 2024-11-20T09:27:54,383 iseq2comem.c: In function ‘fastq2co’: 2024-11-20T09:27:54,384 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-11-20T09:27:54,384 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-11-20T09:27:54,385 | ^~ 2024-11-20T09:27:54,386 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,386 318 | if (base > TL) { 2024-11-20T09:27:54,387 | ^ 2024-11-20T09:27:54,388 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,388 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,389 | ^~ 2024-11-20T09:27:54,390 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,390 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,391 | ^ 2024-11-20T09:27:54,392 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,392 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-11-20T09:27:54,393 | ^ 2024-11-20T09:27:54,394 iseq2comem.c: In function ‘fastq2koc’: 2024-11-20T09:27:54,394 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,395 402 | if (base > TL) { 2024-11-20T09:27:54,396 | ^ 2024-11-20T09:27:54,396 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,397 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,398 | ^~ 2024-11-20T09:27:54,398 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,399 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,400 | ^ 2024-11-20T09:27:54,401 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-11-20T09:27:54,402 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,402 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,403 | ^~ 2024-11-20T09:27:54,403 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-11-20T09:27:54,404 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-11-20T09:27:54,406 | ^ 2024-11-20T09:27:55,744 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-11-20T09:27:55,800 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-11-20T09:27:55,922 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-11-20T09:27:56,313 pykssd.c: In function ‘py_dist_dispatch’: 2024-11-20T09:27:56,314 pykssd.c:329:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-11-20T09:27:56,314 329 | int state1 = dist_dispatch(&dist_opt_val1); 2024-11-20T09:27:56,315 | ^~~~~~ 2024-11-20T09:27:56,316 pykssd.c:386:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-11-20T09:27:56,316 386 | int state2 = dist_dispatch(&dist_opt_val2); 2024-11-20T09:27:56,317 | ^~~~~~ 2024-11-20T09:27:56,317 pykssd.c:510:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-11-20T09:27:56,318 510 | int state4 = dist_dispatch(&dist_opt_val4); 2024-11-20T09:27:56,319 | ^~~~~~ 2024-11-20T09:27:56,953 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-11-20T09:27:57,126 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-20T09:27:57,126 !! 2024-11-20T09:27:57,128 ******************************************************************************** 2024-11-20T09:27:57,128 Please avoid running ``setup.py`` directly. 2024-11-20T09:27:57,129 Instead, use pypa/build, pypa/installer or other 2024-11-20T09:27:57,129 standards-based tools. 2024-11-20T09:27:57,130 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-20T09:27:57,130 ******************************************************************************** 2024-11-20T09:27:57,131 !! 2024-11-20T09:27:57,132 self.initialize_options() 2024-11-20T09:27:57,155 installing to build/bdist.linux-armv7l/wheel 2024-11-20T09:27:57,156 running install 2024-11-20T09:27:57,180 running install_lib 2024-11-20T09:27:57,208 creating build/bdist.linux-armv7l/wheel 2024-11-20T09:27:57,210 copying build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-11-20T09:27:57,220 copying build/lib.linux-armv7l-cpython-311/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2024-11-20T09:27:57,222 running install_egg_info 2024-11-20T09:27:57,255 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.0.2-py3.11.egg-info 2024-11-20T09:27:57,266 running install_scripts 2024-11-20T09:27:57,320 creating build/bdist.linux-armv7l/wheel/kssdutils-1.0.2.dist-info/WHEEL 2024-11-20T09:27:57,323 creating '/tmp/pip-wheel-3cz6qdns/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-20T09:27:57,442 adding 'kssd.cpython-311-arm-linux-gnueabihf.so' 2024-11-20T09:27:57,446 adding 'kssdutils.py' 2024-11-20T09:27:57,448 adding 'kssdutils-1.0.2.dist-info/METADATA' 2024-11-20T09:27:57,449 adding 'kssdutils-1.0.2.dist-info/WHEEL' 2024-11-20T09:27:57,450 adding 'kssdutils-1.0.2.dist-info/dependency_links.txt' 2024-11-20T09:27:57,451 adding 'kssdutils-1.0.2.dist-info/top_level.txt' 2024-11-20T09:27:57,451 adding 'kssdutils-1.0.2.dist-info/RECORD' 2024-11-20T09:27:57,455 removing build/bdist.linux-armv7l/wheel 2024-11-20T09:27:57,601 Building wheel for kssdutils (setup.py): finished with status 'done' 2024-11-20T09:27:57,605 Created wheel for kssdutils: filename=kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl size=178762 sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d 2024-11-20T09:27:57,606 Stored in directory: /tmp/pip-ephem-wheel-cache-a_gzi0z_/wheels/2e/63/39/8331a91c23d611a66f1fad8978c7e9c3838dccd85372d2f7e1 2024-11-20T09:27:57,615 Successfully built kssdutils 2024-11-20T09:27:57,623 Removed build tracker: '/tmp/pip-build-tracker-iwezdezf'