2024-11-20T10:34:50,321 Created temporary directory: /tmp/pip-build-tracker-op9rbsjl 2024-11-20T10:34:50,322 Initialized build tracking at /tmp/pip-build-tracker-op9rbsjl 2024-11-20T10:34:50,323 Created build tracker: /tmp/pip-build-tracker-op9rbsjl 2024-11-20T10:34:50,323 Entered build tracker: /tmp/pip-build-tracker-op9rbsjl 2024-11-20T10:34:50,324 Created temporary directory: /tmp/pip-wheel-oivqmjzw 2024-11-20T10:34:50,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-5lhk0w2z 2024-11-20T10:34:50,374 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-20T10:34:50,376 2 location(s) to search for versions of biobb-model: 2024-11-20T10:34:50,376 * https://pypi.org/simple/biobb-model/ 2024-11-20T10:34:50,376 * https://www.piwheels.org/simple/biobb-model/ 2024-11-20T10:34:50,377 Fetching project page and analyzing links: https://pypi.org/simple/biobb-model/ 2024-11-20T10:34:50,378 Getting page https://pypi.org/simple/biobb-model/ 2024-11-20T10:34:50,379 Found index url https://pypi.org/simple/ 2024-11-20T10:34:50,603 Fetched page https://pypi.org/simple/biobb-model/ as application/vnd.pypi.simple.v1+json 2024-11-20T10:34:50,618 Skipping link: No binaries permitted for biobb-model: https://files.pythonhosted.org/packages/04/2c/db35c91a4ada259196299d52a8b6498b7dc40ff4b8003fcdeaacff9ac70c/biobb_model-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,619 Found link https://files.pythonhosted.org/packages/85/0f/6f47a258873c63f50fb841242ad190a07519d6f427d8064daaa44c21f4a4/biobb_model-0.0.1.tar.gz (from https://pypi.org/simple/biobb-model/) (requires-python:>=3.5), version: 0.0.1 2024-11-20T10:34:50,620 Skipping link: No binaries permitted for biobb-model: https://files.pythonhosted.org/packages/6b/ba/b37f10f6878f068ccac4a3c198ba67c9aeb0c1f327ec7d4cbbbd582ab81e/biobb_model-0.0.2-py3-none-any.whl (from https://pypi.org/simple/biobb-model/) 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https://www.piwheels.org/simple/biobb-model/biobb_model-0.1.0-py3-none-any.whl#sha256=0266e2b82417f4b913edeb96dfd4cc97a6fc80b44b0fe30467155155c4ecc4a0 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3) 2024-11-20T10:34:50,896 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.10-py3-none-any.whl#sha256=f2b914b2dbe117145d7ade817a464f084fbd37781c6593e99d1f4630427fd974 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,897 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.9-py3-none-any.whl#sha256=9e2847679e27096e0c7c7dee847731da6ada5e2d689b5c8bfc8ad02e747b20d2 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,897 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.8-py3-none-any.whl#sha256=abc367a74fb4f53c3202dc0411a771af0e93a2dbddea1e3b6d3e9c39a61d5a08 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,898 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.7-py3-none-any.whl#sha256=41d49a9c73c6c2f885907c45d7b0d184be508c5f08cf81a77ba41067d980df87 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,898 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.6-py3-none-any.whl#sha256=335946712f337ffed0d6827d9f7ba68b445c2b94c5bb27451adceefd2ee92662 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,899 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.5-py3-none-any.whl#sha256=1bce73b867b16ad2342462b1ecef4529151168551c368d0294d6be97d1657fef (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,900 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.4-py3-none-any.whl#sha256=fa6cdaf3d02918c85fb9c5aa46874868ebca99066263e66f3d6eada45603685b (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,901 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.3-py3-none-any.whl#sha256=999802fbb23dbc45b2e7806f415a220d6a0368e2366d77fd56655efc16d3020b (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,901 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.2-py3-none-any.whl#sha256=48f0ec1250c5c74e839e4f163cb4644099199558a8de9dbc0cc6162d9fbabfb3 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,902 Skipping link: No binaries permitted for biobb-model: https://www.piwheels.org/simple/biobb-model/biobb_model-0.0.1-py3-none-any.whl#sha256=38982faef924534ce0a5e77a8365dfd0ebe4af60db541e915039a627e8697085 (from https://www.piwheels.org/simple/biobb-model/) (requires-python:>=3.5) 2024-11-20T10:34:50,902 Skipping link: not a file: https://www.piwheels.org/simple/biobb-model/ 2024-11-20T10:34:50,903 Skipping link: not a file: https://pypi.org/simple/biobb-model/ 2024-11-20T10:34:50,923 Given no hashes to check 1 links for project 'biobb-model': discarding no candidates 2024-11-20T10:34:50,925 Collecting biobb-model==5.0.0 2024-11-20T10:34:50,927 Created temporary directory: /tmp/pip-unpack-suvplih6 2024-11-20T10:34:51,144 Downloading biobb_model-5.0.0.tar.gz (28 kB) 2024-11-20T10:34:51,214 Added biobb-model==5.0.0 from https://files.pythonhosted.org/packages/ad/36/95658483802c38dc20a85e0f129d2867c5e09d96f16868c44f58cdd39a94/biobb_model-5.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-op9rbsjl' 2024-11-20T10:34:51,215 Running setup.py (path:/tmp/pip-wheel-oivqmjzw/biobb-model_4fa2a1eb2fb14eaa9b796d1c270006b7/setup.py) egg_info for package biobb-model 2024-11-20T10:34:51,216 Created temporary directory: /tmp/pip-pip-egg-info-blv2zfot 2024-11-20T10:34:51,217 Preparing metadata (setup.py): started 2024-11-20T10:34:51,218 Running command python setup.py egg_info 2024-11-20T10:34:52,262 running egg_info 2024-11-20T10:34:52,290 creating /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info 2024-11-20T10:34:52,291 writing /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/PKG-INFO 2024-11-20T10:34:52,294 writing dependency_links to /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/dependency_links.txt 2024-11-20T10:34:52,296 writing entry points to /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/entry_points.txt 2024-11-20T10:34:52,297 writing requirements to /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/requires.txt 2024-11-20T10:34:52,298 writing top-level names to /tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/top_level.txt 2024-11-20T10:34:52,300 writing manifest file '/tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/SOURCES.txt' 2024-11-20T10:34:52,388 reading manifest file '/tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/SOURCES.txt' 2024-11-20T10:34:52,390 adding license file 'LICENSE' 2024-11-20T10:34:52,393 writing manifest file '/tmp/pip-pip-egg-info-blv2zfot/biobb_model.egg-info/SOURCES.txt' 2024-11-20T10:34:52,502 Preparing metadata (setup.py): finished with status 'done' 2024-11-20T10:34:52,507 Source in /tmp/pip-wheel-oivqmjzw/biobb-model_4fa2a1eb2fb14eaa9b796d1c270006b7 has version 5.0.0, which satisfies requirement biobb-model==5.0.0 from https://files.pythonhosted.org/packages/ad/36/95658483802c38dc20a85e0f129d2867c5e09d96f16868c44f58cdd39a94/biobb_model-5.0.0.tar.gz 2024-11-20T10:34:52,508 Removed biobb-model==5.0.0 from https://files.pythonhosted.org/packages/ad/36/95658483802c38dc20a85e0f129d2867c5e09d96f16868c44f58cdd39a94/biobb_model-5.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-op9rbsjl' 2024-11-20T10:34:52,514 Created temporary directory: /tmp/pip-unpack-dwmzr1cj 2024-11-20T10:34:52,515 Created temporary directory: /tmp/pip-unpack-zizp38cw 2024-11-20T10:34:52,516 Building wheels for collected packages: biobb-model 2024-11-20T10:34:52,520 Created temporary directory: /tmp/pip-wheel-yy1d20kt 2024-11-20T10:34:52,521 Building wheel for biobb-model (setup.py): started 2024-11-20T10:34:52,522 Destination directory: /tmp/pip-wheel-yy1d20kt 2024-11-20T10:34:52,522 Running command python setup.py bdist_wheel 2024-11-20T10:34:53,539 running bdist_wheel 2024-11-20T10:34:53,672 running build 2024-11-20T10:34:53,673 running build_py 2024-11-20T10:34:53,702 creating build/lib/biobb_model 2024-11-20T10:34:53,705 copying biobb_model/__init__.py -> build/lib/biobb_model 2024-11-20T10:34:53,707 creating build/lib/biobb_model/model 2024-11-20T10:34:53,709 copying biobb_model/model/checking_log.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,711 copying biobb_model/model/fix_chirality.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,714 copying biobb_model/model/__init__.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,716 copying biobb_model/model/fix_altlocs.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,718 copying biobb_model/model/mutate.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,720 copying biobb_model/model/fix_pdb_utils.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,723 copying biobb_model/model/fix_backbone.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,726 copying biobb_model/model/common.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,727 copying biobb_model/model/fix_pdb.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,730 copying biobb_model/model/fix_ssbonds.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,732 copying biobb_model/model/fix_side_chain.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,734 copying biobb_model/model/fix_amides.py -> build/lib/biobb_model/model 2024-11-20T10:34:53,737 creating build/lib/biobb_model/test 2024-11-20T10:34:53,738 copying biobb_model/test/__init__.py -> build/lib/biobb_model/test 2024-11-20T10:34:53,742 copying biobb_model/py.typed -> build/lib/biobb_model 2024-11-20T10:34:53,772 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-20T10:34:53,773 !! 2024-11-20T10:34:53,774 ******************************************************************************** 2024-11-20T10:34:53,774 Please avoid running ``setup.py`` directly. 2024-11-20T10:34:53,775 Instead, use pypa/build, pypa/installer or other 2024-11-20T10:34:53,775 standards-based tools. 2024-11-20T10:34:53,776 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-20T10:34:53,777 ******************************************************************************** 2024-11-20T10:34:53,778 !! 2024-11-20T10:34:53,778 self.initialize_options() 2024-11-20T10:34:53,800 installing to build/bdist.linux-armv7l/wheel 2024-11-20T10:34:53,801 running install 2024-11-20T10:34:53,826 running install_lib 2024-11-20T10:34:53,852 creating build/bdist.linux-armv7l/wheel 2024-11-20T10:34:53,854 creating build/bdist.linux-armv7l/wheel/biobb_model 2024-11-20T10:34:53,856 creating build/bdist.linux-armv7l/wheel/biobb_model/model 2024-11-20T10:34:53,857 copying build/lib/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,860 copying build/lib/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,862 copying build/lib/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,864 copying build/lib/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,866 copying build/lib/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,868 copying build/lib/biobb_model/model/fix_pdb_utils.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,871 copying build/lib/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,874 copying build/lib/biobb_model/model/common.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,875 copying build/lib/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,878 copying build/lib/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,880 copying build/lib/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,882 copying build/lib/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/./biobb_model/model 2024-11-20T10:34:53,886 creating build/bdist.linux-armv7l/wheel/biobb_model/test 2024-11-20T10:34:53,887 copying build/lib/biobb_model/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_model/test 2024-11-20T10:34:53,889 copying build/lib/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_model 2024-11-20T10:34:53,891 copying build/lib/biobb_model/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_model 2024-11-20T10:34:53,892 running install_egg_info 2024-11-20T10:34:53,927 running egg_info 2024-11-20T10:34:53,957 writing biobb_model.egg-info/PKG-INFO 2024-11-20T10:34:53,960 writing dependency_links to biobb_model.egg-info/dependency_links.txt 2024-11-20T10:34:53,962 writing entry points to biobb_model.egg-info/entry_points.txt 2024-11-20T10:34:53,963 writing requirements to biobb_model.egg-info/requires.txt 2024-11-20T10:34:53,964 writing top-level names to biobb_model.egg-info/top_level.txt 2024-11-20T10:34:53,996 reading manifest file 'biobb_model.egg-info/SOURCES.txt' 2024-11-20T10:34:53,998 adding license file 'LICENSE' 2024-11-20T10:34:54,002 writing manifest file 'biobb_model.egg-info/SOURCES.txt' 2024-11-20T10:34:54,003 Copying biobb_model.egg-info to build/bdist.linux-armv7l/wheel/./biobb_model-5.0.0-py3.11.egg-info 2024-11-20T10:34:54,014 running install_scripts 2024-11-20T10:34:54,030 creating build/bdist.linux-armv7l/wheel/biobb_model-5.0.0.dist-info/WHEEL 2024-11-20T10:34:54,033 creating '/tmp/pip-wheel-yy1d20kt/biobb_model-5.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-20T10:34:54,035 adding 'biobb_model/__init__.py' 2024-11-20T10:34:54,036 adding 'biobb_model/py.typed' 2024-11-20T10:34:54,038 adding 'biobb_model/model/__init__.py' 2024-11-20T10:34:54,040 adding 'biobb_model/model/checking_log.py' 2024-11-20T10:34:54,041 adding 'biobb_model/model/common.py' 2024-11-20T10:34:54,043 adding 'biobb_model/model/fix_altlocs.py' 2024-11-20T10:34:54,045 adding 'biobb_model/model/fix_amides.py' 2024-11-20T10:34:54,046 adding 'biobb_model/model/fix_backbone.py' 2024-11-20T10:34:54,048 adding 'biobb_model/model/fix_chirality.py' 2024-11-20T10:34:54,050 adding 'biobb_model/model/fix_pdb.py' 2024-11-20T10:34:54,056 adding 'biobb_model/model/fix_pdb_utils.py' 2024-11-20T10:34:54,058 adding 'biobb_model/model/fix_side_chain.py' 2024-11-20T10:34:54,059 adding 'biobb_model/model/fix_ssbonds.py' 2024-11-20T10:34:54,061 adding 'biobb_model/model/mutate.py' 2024-11-20T10:34:54,063 adding 'biobb_model/test/__init__.py' 2024-11-20T10:34:54,066 adding 'biobb_model-5.0.0.dist-info/LICENSE' 2024-11-20T10:34:54,067 adding 'biobb_model-5.0.0.dist-info/METADATA' 2024-11-20T10:34:54,068 adding 'biobb_model-5.0.0.dist-info/WHEEL' 2024-11-20T10:34:54,069 adding 'biobb_model-5.0.0.dist-info/entry_points.txt' 2024-11-20T10:34:54,070 adding 'biobb_model-5.0.0.dist-info/top_level.txt' 2024-11-20T10:34:54,071 adding 'biobb_model-5.0.0.dist-info/RECORD' 2024-11-20T10:34:54,073 removing build/bdist.linux-armv7l/wheel 2024-11-20T10:34:54,190 Building wheel for biobb-model (setup.py): finished with status 'done' 2024-11-20T10:34:54,194 Created wheel for biobb-model: filename=biobb_model-5.0.0-py3-none-any.whl size=40732 sha256=67b0c5c5c625f0b1fa2b9ef8cf46ce8052d79fe5356cad7a0cf29ece95acfbcb 2024-11-20T10:34:54,195 Stored in directory: /tmp/pip-ephem-wheel-cache-5lhk0w2z/wheels/dd/78/d3/127a71388426525186adb0a657eef045cd085af6d2cb97ab51 2024-11-20T10:34:54,206 Successfully built biobb-model 2024-11-20T10:34:54,212 Removed build tracker: '/tmp/pip-build-tracker-op9rbsjl'