2024-11-28T11:24:00,030 Created temporary directory: /tmp/pip-build-tracker-lwidrg8_ 2024-11-28T11:24:00,032 Initialized build tracking at /tmp/pip-build-tracker-lwidrg8_ 2024-11-28T11:24:00,033 Created build tracker: /tmp/pip-build-tracker-lwidrg8_ 2024-11-28T11:24:00,033 Entered build tracker: /tmp/pip-build-tracker-lwidrg8_ 2024-11-28T11:24:00,034 Created temporary directory: /tmp/pip-wheel-6eoo_lqc 2024-11-28T11:24:00,039 Created temporary directory: /tmp/pip-ephem-wheel-cache-otn5lnqx 2024-11-28T11:24:00,089 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-28T11:24:00,092 2 location(s) to search for versions of pyloopsage: 2024-11-28T11:24:00,092 * https://pypi.org/simple/pyloopsage/ 2024-11-28T11:24:00,092 * https://www.piwheels.org/simple/pyloopsage/ 2024-11-28T11:24:00,093 Fetching project page and analyzing links: https://pypi.org/simple/pyloopsage/ 2024-11-28T11:24:00,094 Getting page https://pypi.org/simple/pyloopsage/ 2024-11-28T11:24:00,096 Found index url https://pypi.org/simple/ 2024-11-28T11:24:00,332 Fetched page https://pypi.org/simple/pyloopsage/ as application/vnd.pypi.simple.v1+json 2024-11-28T11:24:00,336 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/a2/53/c8f2f823b430a9477e549d8a7e8ab36ac976aacd58fe05f84de97db3bd8e/pyLoopSage-1.0.12-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,337 Found link https://files.pythonhosted.org/packages/06/24/b7f5b33dd6254e6c36949878606f20d09ddb3c1e0291a1cb48e2d8888ea6/pyloopsage-1.0.12.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.12 2024-11-28T11:24:00,338 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/18/43/8d63b472c98e81ae43d778d4ba563c0e0fd875dd77396857390c7cc78e00/pyLoopSage-1.0.14-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,339 Found link https://files.pythonhosted.org/packages/b1/08/a7909cae609d3b17ff3ba9084b3277a9004ec6e5e59cd02f1e87c735bc49/pyloopsage-1.0.14.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.14 2024-11-28T11:24:00,340 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/3d/9f/417d8f08f90cc93cb9b1f9aee56a42ce3d518476b0178cfc03272f1a9ba8/pyLoopSage-1.0.15-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,341 Found link https://files.pythonhosted.org/packages/63/8a/a516f808ee477a6b7493574d4537ad9bd33852feea1f99f13eacfafe120e/pyloopsage-1.0.15.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.15 2024-11-28T11:24:00,342 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/04/b8/dbc24fbda627ea30ed6c02c0b8f839cc14ab3e569ce5217e01ef6b607fef/pyLoopSage-1.0.16-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,343 Found link https://files.pythonhosted.org/packages/f5/bd/50b332151faafc5dc5f8511ada882889b96b13ba9f5047120b2a85ecd4ad/pyloopsage-1.0.16.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.16 2024-11-28T11:24:00,344 Skipping link: No binaries permitted for pyloopsage: https://files.pythonhosted.org/packages/89/56/0ab1e78ae4cf32b2676de4290ca9a08e996ea817f8f94d2bbf57497e079c/pyLoopSage-1.0.17-py3-none-any.whl (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,345 Found link https://files.pythonhosted.org/packages/1c/f1/3270386e220bea717406fafd6ef786871af3932da048bc9a7607e4d4a17b/pyloopsage-1.0.17.tar.gz (from https://pypi.org/simple/pyloopsage/) (requires-python:>=3.10), version: 1.0.17 2024-11-28T11:24:00,346 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyloopsage/ 2024-11-28T11:24:00,347 Getting page https://www.piwheels.org/simple/pyloopsage/ 2024-11-28T11:24:00,349 Found index url https://www.piwheels.org/simple/ 2024-11-28T11:24:00,527 Fetched page https://www.piwheels.org/simple/pyloopsage/ as text/html 2024-11-28T11:24:00,530 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.16-py3-none-any.whl#sha256=b91f8c9389d9958394c84184b1373a01557822f205ad93a5f2220ca7e7ccd215 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,530 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.15-py3-none-any.whl#sha256=48e01b2501714ecada636b1f533c03ee3ddf55d43bc374416a5c371d222135af (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,531 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.14-py3-none-any.whl#sha256=a549aad40a794a609d2c75529df7d7e2f0499307bd0dca0e6dfbcf75f495ea78 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,531 Skipping link: No binaries permitted for pyloopsage: https://www.piwheels.org/simple/pyloopsage/pyLoopSage-1.0.12-py3-none-any.whl#sha256=fdd655ad8f0fe2be4aac31401ecb52091c64e4de37eeedfa793b309191bba454 (from https://www.piwheels.org/simple/pyloopsage/) (requires-python:>=3.10) 2024-11-28T11:24:00,532 Skipping link: not a file: https://www.piwheels.org/simple/pyloopsage/ 2024-11-28T11:24:00,532 Skipping link: not a file: https://pypi.org/simple/pyloopsage/ 2024-11-28T11:24:00,554 Given no hashes to check 1 links for project 'pyloopsage': discarding no candidates 2024-11-28T11:24:00,556 Collecting pyloopsage==1.0.17 2024-11-28T11:24:00,559 Created temporary directory: /tmp/pip-unpack-s7j_b_1j 2024-11-28T11:24:00,723 Downloading pyloopsage-1.0.17.tar.gz (52 kB) 2024-11-28T11:24:00,850 Added pyloopsage==1.0.17 from https://files.pythonhosted.org/packages/1c/f1/3270386e220bea717406fafd6ef786871af3932da048bc9a7607e4d4a17b/pyloopsage-1.0.17.tar.gz to build tracker '/tmp/pip-build-tracker-lwidrg8_' 2024-11-28T11:24:00,853 Running setup.py (path:/tmp/pip-wheel-6eoo_lqc/pyloopsage_1d0c255bb3b142b5982c9fc6fc61fb4d/setup.py) egg_info for package pyloopsage 2024-11-28T11:24:00,854 Created temporary directory: /tmp/pip-pip-egg-info-g5lo1em_ 2024-11-28T11:24:00,855 Preparing metadata (setup.py): started 2024-11-28T11:24:00,856 Running command python setup.py egg_info 2024-11-28T11:24:02,131 running egg_info 2024-11-28T11:24:02,165 creating /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info 2024-11-28T11:24:02,166 writing /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/PKG-INFO 2024-11-28T11:24:02,172 writing dependency_links to /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/dependency_links.txt 2024-11-28T11:24:02,174 writing entry points to /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/entry_points.txt 2024-11-28T11:24:02,176 writing requirements to /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/requires.txt 2024-11-28T11:24:02,178 writing top-level names to /tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/top_level.txt 2024-11-28T11:24:02,180 writing manifest file '/tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/SOURCES.txt' 2024-11-28T11:24:02,292 reading manifest file '/tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/SOURCES.txt' 2024-11-28T11:24:02,294 adding license file 'LICENSE' 2024-11-28T11:24:02,297 writing manifest file '/tmp/pip-pip-egg-info-g5lo1em_/pyLoopSage.egg-info/SOURCES.txt' 2024-11-28T11:24:02,418 Preparing metadata (setup.py): finished with status 'done' 2024-11-28T11:24:02,424 Source in /tmp/pip-wheel-6eoo_lqc/pyloopsage_1d0c255bb3b142b5982c9fc6fc61fb4d has version 1.0.17, which satisfies requirement pyloopsage==1.0.17 from https://files.pythonhosted.org/packages/1c/f1/3270386e220bea717406fafd6ef786871af3932da048bc9a7607e4d4a17b/pyloopsage-1.0.17.tar.gz 2024-11-28T11:24:02,425 Removed pyloopsage==1.0.17 from https://files.pythonhosted.org/packages/1c/f1/3270386e220bea717406fafd6ef786871af3932da048bc9a7607e4d4a17b/pyloopsage-1.0.17.tar.gz from build tracker '/tmp/pip-build-tracker-lwidrg8_' 2024-11-28T11:24:02,435 Created temporary directory: /tmp/pip-unpack-alvodoyq 2024-11-28T11:24:02,437 Created temporary directory: /tmp/pip-unpack-4kqg6tuf 2024-11-28T11:24:02,438 Building wheels for collected packages: pyloopsage 2024-11-28T11:24:02,442 Created temporary directory: /tmp/pip-wheel-d5v0pqbx 2024-11-28T11:24:02,443 Building wheel for pyloopsage (setup.py): started 2024-11-28T11:24:02,445 Destination directory: /tmp/pip-wheel-d5v0pqbx 2024-11-28T11:24:02,445 Running command python setup.py bdist_wheel 2024-11-28T11:24:03,583 running bdist_wheel 2024-11-28T11:24:03,735 running build 2024-11-28T11:24:03,735 running build_py 2024-11-28T11:24:03,768 creating build/lib/loopsage 2024-11-28T11:24:03,771 copying loopsage/run.py -> build/lib/loopsage 2024-11-28T11:24:03,773 copying loopsage/preproc.py -> build/lib/loopsage 2024-11-28T11:24:03,776 copying loopsage/__init__.py -> build/lib/loopsage 2024-11-28T11:24:03,778 copying loopsage/initial_structures.py -> build/lib/loopsage 2024-11-28T11:24:03,781 copying loopsage/md.py -> build/lib/loopsage 2024-11-28T11:24:03,784 copying loopsage/stochastic_simulation.py -> build/lib/loopsage 2024-11-28T11:24:03,787 copying loopsage/vizualization_tools.py -> build/lib/loopsage 2024-11-28T11:24:03,789 copying loopsage/plots.py -> build/lib/loopsage 2024-11-28T11:24:03,792 copying loopsage/em.py -> build/lib/loopsage 2024-11-28T11:24:03,795 copying loopsage/utils.py -> build/lib/loopsage 2024-11-28T11:24:03,798 copying loopsage/args_definition.py -> build/lib/loopsage 2024-11-28T11:24:03,801 running egg_info 2024-11-28T11:24:03,831 writing pyLoopSage.egg-info/PKG-INFO 2024-11-28T11:24:03,835 writing dependency_links to pyLoopSage.egg-info/dependency_links.txt 2024-11-28T11:24:03,837 writing entry points to pyLoopSage.egg-info/entry_points.txt 2024-11-28T11:24:03,838 writing requirements to pyLoopSage.egg-info/requires.txt 2024-11-28T11:24:03,840 writing top-level names to pyLoopSage.egg-info/top_level.txt 2024-11-28T11:24:03,876 reading manifest file 'pyLoopSage.egg-info/SOURCES.txt' 2024-11-28T11:24:03,879 adding license file 'LICENSE' 2024-11-28T11:24:03,882 writing manifest file 'pyLoopSage.egg-info/SOURCES.txt' 2024-11-28T11:24:03,884 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'loopsage.forcefields' is absent from the `packages` configuration. 2024-11-28T11:24:03,885 !! 2024-11-28T11:24:03,887 ******************************************************************************** 2024-11-28T11:24:03,887 ############################ 2024-11-28T11:24:03,888 # Package would be ignored # 2024-11-28T11:24:03,889 ############################ 2024-11-28T11:24:03,889 Python recognizes 'loopsage.forcefields' as an importable package[^1], 2024-11-28T11:24:03,890 but it is absent from setuptools' `packages` configuration. 2024-11-28T11:24:03,891 This leads to an ambiguous overall configuration. If you want to distribute this 2024-11-28T11:24:03,892 package, please make sure that 'loopsage.forcefields' is explicitly added 2024-11-28T11:24:03,893 to the `packages` configuration field. 2024-11-28T11:24:03,894 Alternatively, you can also rely on setuptools' discovery methods 2024-11-28T11:24:03,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-11-28T11:24:03,895 instead of `find_packages(...)`/`find:`). 2024-11-28T11:24:03,896 You can read more about "package discovery" on setuptools documentation page: 2024-11-28T11:24:03,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-11-28T11:24:03,899 If you don't want 'loopsage.forcefields' to be distributed and are 2024-11-28T11:24:03,900 already explicitly excluding 'loopsage.forcefields' via 2024-11-28T11:24:03,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-11-28T11:24:03,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-11-28T11:24:03,902 combination with a more fine grained `package-data` configuration. 2024-11-28T11:24:03,903 You can read more about "package data files" on setuptools documentation page: 2024-11-28T11:24:03,904 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-11-28T11:24:03,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-11-28T11:24:03,906 even if it does not contain any `.py` files. 2024-11-28T11:24:03,907 On the other hand, currently there is no concept of package data 2024-11-28T11:24:03,907 directory, all directories are treated like packages. 2024-11-28T11:24:03,908 ******************************************************************************** 2024-11-28T11:24:03,909 !! 2024-11-28T11:24:03,910 check.warn(importable) 2024-11-28T11:24:03,910 creating build/lib/loopsage/forcefields 2024-11-28T11:24:03,911 copying loopsage/forcefields/classic_sm_ff.xml -> build/lib/loopsage/forcefields 2024-11-28T11:24:03,926 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-28T11:24:03,927 !! 2024-11-28T11:24:03,928 ******************************************************************************** 2024-11-28T11:24:03,928 Please avoid running ``setup.py`` directly. 2024-11-28T11:24:03,929 Instead, use pypa/build, pypa/installer or other 2024-11-28T11:24:03,930 standards-based tools. 2024-11-28T11:24:03,931 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-28T11:24:03,931 ******************************************************************************** 2024-11-28T11:24:03,933 !! 2024-11-28T11:24:03,933 self.initialize_options() 2024-11-28T11:24:03,957 installing to build/bdist.linux-armv7l/wheel 2024-11-28T11:24:03,957 running install 2024-11-28T11:24:03,982 running install_lib 2024-11-28T11:24:04,012 creating build/bdist.linux-armv7l/wheel 2024-11-28T11:24:04,015 creating build/bdist.linux-armv7l/wheel/loopsage 2024-11-28T11:24:04,016 copying build/lib/loopsage/run.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,019 creating build/bdist.linux-armv7l/wheel/loopsage/forcefields 2024-11-28T11:24:04,020 copying build/lib/loopsage/forcefields/classic_sm_ff.xml -> build/bdist.linux-armv7l/wheel/./loopsage/forcefields 2024-11-28T11:24:04,022 copying build/lib/loopsage/preproc.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,024 copying build/lib/loopsage/__init__.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,026 copying build/lib/loopsage/initial_structures.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,029 copying build/lib/loopsage/md.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,032 copying build/lib/loopsage/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,035 copying build/lib/loopsage/vizualization_tools.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,037 copying build/lib/loopsage/plots.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,041 copying build/lib/loopsage/em.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,044 copying build/lib/loopsage/utils.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,048 copying build/lib/loopsage/args_definition.py -> build/bdist.linux-armv7l/wheel/./loopsage 2024-11-28T11:24:04,051 running install_egg_info 2024-11-28T11:24:04,094 Copying pyLoopSage.egg-info to build/bdist.linux-armv7l/wheel/./pyLoopSage-1.0.17-py3.11.egg-info 2024-11-28T11:24:04,109 running install_scripts 2024-11-28T11:24:04,133 creating build/bdist.linux-armv7l/wheel/pyLoopSage-1.0.17.dist-info/WHEEL 2024-11-28T11:24:04,136 creating '/tmp/pip-wheel-d5v0pqbx/pyLoopSage-1.0.17-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-28T11:24:04,139 adding 'loopsage/__init__.py' 2024-11-28T11:24:04,141 adding 'loopsage/args_definition.py' 2024-11-28T11:24:04,143 adding 'loopsage/em.py' 2024-11-28T11:24:04,144 adding 'loopsage/initial_structures.py' 2024-11-28T11:24:04,146 adding 'loopsage/md.py' 2024-11-28T11:24:04,148 adding 'loopsage/plots.py' 2024-11-28T11:24:04,150 adding 'loopsage/preproc.py' 2024-11-28T11:24:04,152 adding 'loopsage/run.py' 2024-11-28T11:24:04,154 adding 'loopsage/stochastic_simulation.py' 2024-11-28T11:24:04,156 adding 'loopsage/utils.py' 2024-11-28T11:24:04,158 adding 'loopsage/vizualization_tools.py' 2024-11-28T11:24:04,160 adding 'loopsage/forcefields/classic_sm_ff.xml' 2024-11-28T11:24:04,167 adding 'pyLoopSage-1.0.17.dist-info/LICENSE' 2024-11-28T11:24:04,170 adding 'pyLoopSage-1.0.17.dist-info/METADATA' 2024-11-28T11:24:04,171 adding 'pyLoopSage-1.0.17.dist-info/WHEEL' 2024-11-28T11:24:04,172 adding 'pyLoopSage-1.0.17.dist-info/entry_points.txt' 2024-11-28T11:24:04,173 adding 'pyLoopSage-1.0.17.dist-info/top_level.txt' 2024-11-28T11:24:04,174 adding 'pyLoopSage-1.0.17.dist-info/RECORD' 2024-11-28T11:24:04,177 removing build/bdist.linux-armv7l/wheel 2024-11-28T11:24:04,305 Building wheel for pyloopsage (setup.py): finished with status 'done' 2024-11-28T11:24:04,309 Created wheel for pyloopsage: filename=pyLoopSage-1.0.17-py3-none-any.whl size=51132 sha256=9de4f048ba4072592b866c23a92985ac6c58c21b5cba14d9260369b83f97e3c1 2024-11-28T11:24:04,310 Stored in directory: /tmp/pip-ephem-wheel-cache-otn5lnqx/wheels/e5/a0/9d/72aa04dfb383bdbb32c5cf7fee767a250f33efcc512ae89814 2024-11-28T11:24:04,325 Successfully built pyloopsage 2024-11-28T11:24:04,331 Removed build tracker: '/tmp/pip-build-tracker-lwidrg8_'