2024-11-29T02:49:13,968 Created temporary directory: /tmp/pip-build-tracker-7fugs6hg 2024-11-29T02:49:13,969 Initialized build tracking at /tmp/pip-build-tracker-7fugs6hg 2024-11-29T02:49:13,970 Created build tracker: /tmp/pip-build-tracker-7fugs6hg 2024-11-29T02:49:13,970 Entered build tracker: /tmp/pip-build-tracker-7fugs6hg 2024-11-29T02:49:13,971 Created temporary directory: /tmp/pip-wheel-58no54r4 2024-11-29T02:49:13,975 Created temporary directory: /tmp/pip-ephem-wheel-cache-9mxz6c7a 2024-11-29T02:49:14,018 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-29T02:49:14,020 2 location(s) to search for versions of ot-grn: 2024-11-29T02:49:14,020 * https://pypi.org/simple/ot-grn/ 2024-11-29T02:49:14,020 * https://www.piwheels.org/simple/ot-grn/ 2024-11-29T02:49:14,021 Fetching project page and analyzing links: https://pypi.org/simple/ot-grn/ 2024-11-29T02:49:14,022 Getting page https://pypi.org/simple/ot-grn/ 2024-11-29T02:49:14,023 Found index url https://pypi.org/simple/ 2024-11-29T02:49:14,242 Fetched page https://pypi.org/simple/ot-grn/ as application/vnd.pypi.simple.v1+json 2024-11-29T02:49:14,243 Skipping link: No binaries permitted for ot-grn: https://files.pythonhosted.org/packages/1b/4f/a7dfd08ff9a65d4d1fbf224d35498773d49cd8d4a52d099afe6735d0afef/ot_grn-0.1.4-py3-none-any.whl (from https://pypi.org/simple/ot-grn/) (requires-python:>=3.7) 2024-11-29T02:49:14,244 Found link https://files.pythonhosted.org/packages/78/fd/2cc24fb318fb5827c4a72435ada259f57a04ca551ec54f35c9f9cd1a3d08/ot_grn-0.1.4.tar.gz (from https://pypi.org/simple/ot-grn/) (requires-python:>=3.7), version: 0.1.4 2024-11-29T02:49:14,245 Fetching project page and analyzing links: https://www.piwheels.org/simple/ot-grn/ 2024-11-29T02:49:14,246 Getting page https://www.piwheels.org/simple/ot-grn/ 2024-11-29T02:49:14,247 Found index url https://www.piwheels.org/simple/ 2024-11-29T02:49:14,410 Fetched page https://www.piwheels.org/simple/ot-grn/ as text/html 2024-11-29T02:49:14,411 Skipping link: not a file: https://www.piwheels.org/simple/ot-grn/ 2024-11-29T02:49:14,412 Skipping link: not a file: https://pypi.org/simple/ot-grn/ 2024-11-29T02:49:14,429 Given no hashes to check 1 links for project 'ot-grn': discarding no candidates 2024-11-29T02:49:14,431 Collecting ot-grn==0.1.4 2024-11-29T02:49:14,433 Created temporary directory: /tmp/pip-unpack-vy_28dc7 2024-11-29T02:49:14,671 Downloading ot_grn-0.1.4.tar.gz (5.2 MB) 2024-11-29T02:49:16,025 Added ot-grn==0.1.4 from https://files.pythonhosted.org/packages/78/fd/2cc24fb318fb5827c4a72435ada259f57a04ca551ec54f35c9f9cd1a3d08/ot_grn-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-7fugs6hg' 2024-11-29T02:49:16,027 Running setup.py (path:/tmp/pip-wheel-58no54r4/ot-grn_19441ebb5c234dd5b0c29783c4be01f7/setup.py) egg_info for package ot-grn 2024-11-29T02:49:16,028 Created temporary directory: /tmp/pip-pip-egg-info-h6gmibzs 2024-11-29T02:49:16,029 Preparing metadata (setup.py): started 2024-11-29T02:49:16,030 Running command python setup.py egg_info 2024-11-29T02:49:16,526 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-11-29T02:49:16,526 !! 2024-11-29T02:49:16,527 ******************************************************************************** 2024-11-29T02:49:16,528 Usage of dash-separated 'description-file' will not be supported in future 2024-11-29T02:49:16,528 versions. Please use the underscore name 'description_file' instead. 2024-11-29T02:49:16,530 By 2025-Mar-03, you need to update your project and remove deprecated calls 2024-11-29T02:49:16,530 or your builds will no longer be supported. 2024-11-29T02:49:16,532 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-11-29T02:49:16,532 ******************************************************************************** 2024-11-29T02:49:16,533 !! 2024-11-29T02:49:16,534 opt = self.warn_dash_deprecation(opt, section) 2024-11-29T02:49:17,061 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-11-29T02:49:17,062 !! 2024-11-29T02:49:17,063 ******************************************************************************** 2024-11-29T02:49:17,063 Usage of dash-separated 'description-file' will not be supported in future 2024-11-29T02:49:17,063 versions. Please use the underscore name 'description_file' instead. 2024-11-29T02:49:17,064 By 2025-Mar-03, you need to update your project and remove deprecated calls 2024-11-29T02:49:17,065 or your builds will no longer be supported. 2024-11-29T02:49:17,066 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-11-29T02:49:17,066 ******************************************************************************** 2024-11-29T02:49:17,067 !! 2024-11-29T02:49:17,068 opt = self.warn_dash_deprecation(opt, section) 2024-11-29T02:49:17,095 running egg_info 2024-11-29T02:49:17,123 creating /tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info 2024-11-29T02:49:17,124 writing /tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/PKG-INFO 2024-11-29T02:49:17,127 writing dependency_links to /tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/dependency_links.txt 2024-11-29T02:49:17,129 writing requirements to /tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/requires.txt 2024-11-29T02:49:17,130 writing top-level names to /tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/top_level.txt 2024-11-29T02:49:17,131 writing manifest file '/tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/SOURCES.txt' 2024-11-29T02:49:17,219 reading manifest file '/tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/SOURCES.txt' 2024-11-29T02:49:17,220 reading manifest template 'MANIFEST.in' 2024-11-29T02:49:17,222 adding license file 'LICENSE' 2024-11-29T02:49:17,225 writing manifest file '/tmp/pip-pip-egg-info-h6gmibzs/ot_grn.egg-info/SOURCES.txt' 2024-11-29T02:49:17,333 Preparing metadata (setup.py): finished with status 'done' 2024-11-29T02:49:17,337 Source in /tmp/pip-wheel-58no54r4/ot-grn_19441ebb5c234dd5b0c29783c4be01f7 has version 0.1.4, which satisfies requirement ot-grn==0.1.4 from https://files.pythonhosted.org/packages/78/fd/2cc24fb318fb5827c4a72435ada259f57a04ca551ec54f35c9f9cd1a3d08/ot_grn-0.1.4.tar.gz 2024-11-29T02:49:17,338 Removed ot-grn==0.1.4 from https://files.pythonhosted.org/packages/78/fd/2cc24fb318fb5827c4a72435ada259f57a04ca551ec54f35c9f9cd1a3d08/ot_grn-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-7fugs6hg' 2024-11-29T02:49:17,344 Created temporary directory: /tmp/pip-unpack-2afq7y2c 2024-11-29T02:49:17,346 Created temporary directory: /tmp/pip-unpack-jg6slsvv 2024-11-29T02:49:17,346 Building wheels for collected packages: ot-grn 2024-11-29T02:49:17,351 Created temporary directory: /tmp/pip-wheel-4l4mn3ym 2024-11-29T02:49:17,351 Building wheel for ot-grn (setup.py): started 2024-11-29T02:49:17,353 Destination directory: /tmp/pip-wheel-4l4mn3ym 2024-11-29T02:49:17,353 Running command python setup.py bdist_wheel 2024-11-29T02:49:17,842 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-11-29T02:49:17,842 !! 2024-11-29T02:49:17,843 ******************************************************************************** 2024-11-29T02:49:17,844 Usage of dash-separated 'description-file' will not be supported in future 2024-11-29T02:49:17,844 versions. Please use the underscore name 'description_file' instead. 2024-11-29T02:49:17,845 By 2025-Mar-03, you need to update your project and remove deprecated calls 2024-11-29T02:49:17,846 or your builds will no longer be supported. 2024-11-29T02:49:17,847 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-11-29T02:49:17,847 ******************************************************************************** 2024-11-29T02:49:17,849 !! 2024-11-29T02:49:17,849 opt = self.warn_dash_deprecation(opt, section) 2024-11-29T02:49:18,362 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:495: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-11-29T02:49:18,363 !! 2024-11-29T02:49:18,364 ******************************************************************************** 2024-11-29T02:49:18,364 Usage of dash-separated 'description-file' will not be supported in future 2024-11-29T02:49:18,365 versions. Please use the underscore name 'description_file' instead. 2024-11-29T02:49:18,365 By 2025-Mar-03, you need to update your project and remove deprecated calls 2024-11-29T02:49:18,366 or your builds will no longer be supported. 2024-11-29T02:49:18,367 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-11-29T02:49:18,367 ******************************************************************************** 2024-11-29T02:49:18,368 !! 2024-11-29T02:49:18,369 opt = self.warn_dash_deprecation(opt, section) 2024-11-29T02:49:18,371 running bdist_wheel 2024-11-29T02:49:18,502 running build 2024-11-29T02:49:18,503 running build_py 2024-11-29T02:49:18,533 creating build/lib/ot_grn 2024-11-29T02:49:18,535 copying ot_grn/evaluate_grn_accuracy.py -> build/lib/ot_grn 2024-11-29T02:49:18,537 copying ot_grn/extract_top_edges.py -> build/lib/ot_grn 2024-11-29T02:49:18,539 copying ot_grn/__init__.py -> build/lib/ot_grn 2024-11-29T02:49:18,541 copying ot_grn/double_ot.py -> build/lib/ot_grn 2024-11-29T02:49:18,544 copying ot_grn/generate_simulated_data.py -> build/lib/ot_grn 2024-11-29T02:49:18,546 copying ot_grn/load_gastric_cancer_data.py -> build/lib/ot_grn 2024-11-29T02:49:18,549 creating build/lib/ot_grn/data 2024-11-29T02:49:18,550 copying ot_grn/data/__init__.py -> build/lib/ot_grn/data 2024-11-29T02:49:18,551 running egg_info 2024-11-29T02:49:18,578 writing ot_grn.egg-info/PKG-INFO 2024-11-29T02:49:18,581 writing dependency_links to ot_grn.egg-info/dependency_links.txt 2024-11-29T02:49:18,583 writing requirements to ot_grn.egg-info/requires.txt 2024-11-29T02:49:18,584 writing top-level names to ot_grn.egg-info/top_level.txt 2024-11-29T02:49:18,618 reading manifest file 'ot_grn.egg-info/SOURCES.txt' 2024-11-29T02:49:18,621 reading manifest template 'MANIFEST.in' 2024-11-29T02:49:18,622 adding license file 'LICENSE' 2024-11-29T02:49:18,625 writing manifest file 'ot_grn.egg-info/SOURCES.txt' 2024-11-29T02:49:18,629 copying ot_grn/data/normal_data_source1.csv -> build/lib/ot_grn/data 2024-11-29T02:49:18,686 copying ot_grn/data/normal_data_source2.csv -> build/lib/ot_grn/data 2024-11-29T02:49:18,703 copying ot_grn/data/tumor_data_source1.csv -> build/lib/ot_grn/data 2024-11-29T02:49:18,844 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-29T02:49:18,845 !! 2024-11-29T02:49:18,846 ******************************************************************************** 2024-11-29T02:49:18,846 Please avoid running ``setup.py`` directly. 2024-11-29T02:49:18,847 Instead, use pypa/build, pypa/installer or other 2024-11-29T02:49:18,847 standards-based tools. 2024-11-29T02:49:18,848 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-29T02:49:18,856 ******************************************************************************** 2024-11-29T02:49:18,857 !! 2024-11-29T02:49:18,857 self.initialize_options() 2024-11-29T02:49:18,879 installing to build/bdist.linux-armv7l/wheel 2024-11-29T02:49:18,879 running install 2024-11-29T02:49:18,903 running install_lib 2024-11-29T02:49:18,930 creating build/bdist.linux-armv7l/wheel 2024-11-29T02:49:18,933 creating build/bdist.linux-armv7l/wheel/ot_grn 2024-11-29T02:49:18,934 copying build/lib/ot_grn/evaluate_grn_accuracy.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:18,936 copying build/lib/ot_grn/extract_top_edges.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:18,938 creating build/bdist.linux-armv7l/wheel/ot_grn/data 2024-11-29T02:49:18,939 copying build/lib/ot_grn/data/normal_data_source1.csv -> build/bdist.linux-armv7l/wheel/./ot_grn/data 2024-11-29T02:49:18,989 copying build/lib/ot_grn/data/normal_data_source2.csv -> build/bdist.linux-armv7l/wheel/./ot_grn/data 2024-11-29T02:49:19,002 copying build/lib/ot_grn/data/tumor_data_source1.csv -> build/bdist.linux-armv7l/wheel/./ot_grn/data 2024-11-29T02:49:19,112 copying build/lib/ot_grn/data/__init__.py -> build/bdist.linux-armv7l/wheel/./ot_grn/data 2024-11-29T02:49:19,114 copying build/lib/ot_grn/__init__.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:19,115 copying build/lib/ot_grn/double_ot.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:19,117 copying build/lib/ot_grn/generate_simulated_data.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:19,120 copying build/lib/ot_grn/load_gastric_cancer_data.py -> build/bdist.linux-armv7l/wheel/./ot_grn 2024-11-29T02:49:19,121 running install_egg_info 2024-11-29T02:49:19,155 Copying ot_grn.egg-info to build/bdist.linux-armv7l/wheel/./ot_grn-0.1.4-py3.11.egg-info 2024-11-29T02:49:19,164 running install_scripts 2024-11-29T02:49:19,178 creating build/bdist.linux-armv7l/wheel/ot_grn-0.1.4.dist-info/WHEEL 2024-11-29T02:49:19,181 creating '/tmp/pip-wheel-4l4mn3ym/ot_grn-0.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-29T02:49:19,183 adding 'ot_grn/__init__.py' 2024-11-29T02:49:19,185 adding 'ot_grn/double_ot.py' 2024-11-29T02:49:19,186 adding 'ot_grn/evaluate_grn_accuracy.py' 2024-11-29T02:49:19,188 adding 'ot_grn/extract_top_edges.py' 2024-11-29T02:49:19,189 adding 'ot_grn/generate_simulated_data.py' 2024-11-29T02:49:19,191 adding 'ot_grn/load_gastric_cancer_data.py' 2024-11-29T02:49:19,193 adding 'ot_grn/data/__init__.py' 2024-11-29T02:49:20,098 adding 'ot_grn/data/normal_data_source1.csv' 2024-11-29T02:49:20,344 adding 'ot_grn/data/normal_data_source2.csv' 2024-11-29T02:49:22,463 adding 'ot_grn/data/tumor_data_source1.csv' 2024-11-29T02:49:22,512 adding 'ot_grn-0.1.4.dist-info/LICENSE' 2024-11-29T02:49:22,513 adding 'ot_grn-0.1.4.dist-info/METADATA' 2024-11-29T02:49:22,514 adding 'ot_grn-0.1.4.dist-info/WHEEL' 2024-11-29T02:49:22,515 adding 'ot_grn-0.1.4.dist-info/top_level.txt' 2024-11-29T02:49:22,516 adding 'ot_grn-0.1.4.dist-info/RECORD' 2024-11-29T02:49:22,577 removing build/bdist.linux-armv7l/wheel 2024-11-29T02:49:22,697 Building wheel for ot-grn (setup.py): finished with status 'done' 2024-11-29T02:49:22,751 Created wheel for ot-grn: filename=ot_grn-0.1.4-py3-none-any.whl size=5269761 sha256=89596653addeba08545ac0c4fb218f43b1cafd11a8f4f8fed7db016d1e1e2f68 2024-11-29T02:49:22,753 Stored in directory: /tmp/pip-ephem-wheel-cache-9mxz6c7a/wheels/e8/3a/b6/176a7bbc48cbe6905e872d6fdac925d99b71cb1221aae72647 2024-11-29T02:49:22,766 Successfully built ot-grn 2024-11-29T02:49:22,893 Removed build tracker: '/tmp/pip-build-tracker-7fugs6hg'