2024-11-29T07:47:48,543 Created temporary directory: /tmp/pip-build-tracker-cdp0nnq3
2024-11-29T07:47:48,545 Initialized build tracking at /tmp/pip-build-tracker-cdp0nnq3
2024-11-29T07:47:48,545 Created build tracker: /tmp/pip-build-tracker-cdp0nnq3
2024-11-29T07:47:48,546 Entered build tracker: /tmp/pip-build-tracker-cdp0nnq3
2024-11-29T07:47:48,547 Created temporary directory: /tmp/pip-wheel-oafj4n66
2024-11-29T07:47:48,551 Created temporary directory: /tmp/pip-ephem-wheel-cache-8ekfx36k
2024-11-29T07:47:48,594 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-29T07:47:48,597 2 location(s) to search for versions of dnachisel:
2024-11-29T07:47:48,597 * https://pypi.org/simple/dnachisel/
2024-11-29T07:47:48,597 * https://www.piwheels.org/simple/dnachisel/
2024-11-29T07:47:48,598 Fetching project page and analyzing links: https://pypi.org/simple/dnachisel/
2024-11-29T07:47:48,599 Getting page https://pypi.org/simple/dnachisel/
2024-11-29T07:47:48,600 Found index url https://pypi.org/simple/
2024-11-29T07:47:48,744 Fetched page https://pypi.org/simple/dnachisel/ as application/vnd.pypi.simple.v1+json
2024-11-29T07:47:48,754   Found link https://files.pythonhosted.org/packages/05/47/a96748f3a5b7244f0831e226d5e41739a4d5e9ce407bbc8a2780a75aaff9/dnachisel-0.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.0
2024-11-29T07:47:48,755   Found link https://files.pythonhosted.org/packages/f1/47/a7e5698b69ef6ccff6f92c2114b5d4274fafd847309180e643a0463c71ad/dnachisel-0.1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.1
2024-11-29T07:47:48,755   Found link https://files.pythonhosted.org/packages/44/f2/2ca105de7874b06905dca1ce5889c8523a2c76bc940383cd41ea5e63384a/dnachisel-0.1.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.2
2024-11-29T07:47:48,756   Found link https://files.pythonhosted.org/packages/a2/41/df1ebdb209906aa5339e4e07844efd206cdeb535ed3d158d247ee183346b/dnachisel-0.1.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.3
2024-11-29T07:47:48,757   Found link https://files.pythonhosted.org/packages/05/8d/6fa334dd787e19a6c059b8b40435c0a92041ecdd350f4d3a3729a0b15380/dnachisel-0.1.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.4
2024-11-29T07:47:48,758   Found link https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.5
2024-11-29T07:47:48,758   Found link https://files.pythonhosted.org/packages/31/58/e3c107bbfceb08be5b2e7d67c24a4cb779e59300e0591a795ddc53e8eeab/dnachisel-0.1.6.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.6
2024-11-29T07:47:48,759   Found link https://files.pythonhosted.org/packages/a3/23/47c02344131eaeb270e89ca4e38226a0dc7e1b0c156a8b6d92c4a1645c5a/dnachisel-0.1.7.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.7
2024-11-29T07:47:48,760   Found link https://files.pythonhosted.org/packages/92/7c/7d2bc5e0742106a515fe2355493b8c923c8f47dd7c5de84592c9337cbd89/dnachisel-0.1.8.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.8
2024-11-29T07:47:48,761   Found link https://files.pythonhosted.org/packages/c0/c1/7970faf4a8eec61766eb311ee586a70fe838f9e4c58ab812b83276d61f0c/dnachisel-0.1.9.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.1.9
2024-11-29T07:47:48,762   Found link https://files.pythonhosted.org/packages/a0/0b/85ee2c0625a40c535e6a33413d5f523edb5c6546917929ba2e7c03828ab6/dnachisel-0.2.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.2.0
2024-11-29T07:47:48,762   Found link https://files.pythonhosted.org/packages/c0/29/db1c95f8e340101f9332b267e2995935f2f62bb5ff11393180ffd096549e/dnachisel-0.3.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.3.0
2024-11-29T07:47:48,763   Found link https://files.pythonhosted.org/packages/a5/36/fdfbf8e7b94c4bac0c1accae5fc84acac47f3cce59fee55e2d67e2b3a8d0/dnachisel-0.3.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 0.3.1
2024-11-29T07:47:48,764   Found link https://files.pythonhosted.org/packages/29/2c/05743f061b8604c700ced74c2c036f2e02d5bcc179f96670739019d539fb/dnachisel-1.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.0
2024-11-29T07:47:48,764   Found link https://files.pythonhosted.org/packages/6b/0b/bba0d5cebcba782549cf8b551b97e57b9e9ec0724b010321133f05fc48fe/dnachisel-1.0.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.1
2024-11-29T07:47:48,765   Found link https://files.pythonhosted.org/packages/49/d5/8531e5002b8953c1f00bd3ca8160c61860d1e5694af793ac9db1932d530c/dnachisel-1.0.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.0.2
2024-11-29T07:47:48,766   Found link https://files.pythonhosted.org/packages/1a/9f/e3a23a2eb761313cbedf0a6eb5eb4839dcd097a2e0f048caf00a0960a875/dnachisel-1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.1
2024-11-29T07:47:48,766   Found link https://files.pythonhosted.org/packages/28/3a/90c1c8c66ac4d1855e68d84f5ac4b02725b66269fa1e5f3ad659e8aee5ce/dnachisel-1.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.2
2024-11-29T07:47:48,767   Found link https://files.pythonhosted.org/packages/17/72/010b47cc62d2106d185010311b30fd8befd2da3b63d824f1f2a14f0acece/dnachisel-1.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.3
2024-11-29T07:47:48,768   Found link https://files.pythonhosted.org/packages/17/a4/2d692becb5bb3b9e8cae803bde47b606c26e58b86149c52d13c320150a92/dnachisel-1.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.4
2024-11-29T07:47:48,768   Found link https://files.pythonhosted.org/packages/81/f0/c45e6358561f83b95cd1910cb4fdd4158238abed56cc6ece1013b7b88eee/dnachisel-1.4.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 1.4.1
2024-11-29T07:47:48,769   Found link https://files.pythonhosted.org/packages/66/d8/866a7025c8125864ec06e29d23be478f50a38470fa30ef189b5b9445f12e/dnachisel-2.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 2.0.0
2024-11-29T07:47:48,769   Found link https://files.pythonhosted.org/packages/79/c2/8d534725f459a631034e367ae792ea8eecfb6a6a9ce5f24aab857a10244b/dnachisel-2.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 2.1.0
2024-11-29T07:47:48,770   Found link https://files.pythonhosted.org/packages/17/0e/0477c7314cf9101442887d397f3d8667e512302f76462108e69781f42800/dnachisel-3.0.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.0
2024-11-29T07:47:48,771   Found link https://files.pythonhosted.org/packages/b8/c5/f12a80ad9344e5bb51374da19ad03b8ee641ebb9c7c0fc2aefc6483fcf1d/dnachisel-3.0.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.1
2024-11-29T07:47:48,771   Found link https://files.pythonhosted.org/packages/79/61/8eaefa82fef964ae1e0a885eb3bf12d848d3da6c4f74435956669c2beb28/dnachisel-3.0.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.0.2
2024-11-29T07:47:48,772   Found link https://files.pythonhosted.org/packages/5e/16/d74e12592595d79c467989a69440fdf95e6017a1c8bcdc842cec3dd114c9/dnachisel-3.1.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.1.0
2024-11-29T07:47:48,773   Found link https://files.pythonhosted.org/packages/60/f1/e44f58e59a4f14e278c3a90e7f033a3b440c3c548695416d3a01bcb77042/dnachisel-3.1.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.1.1
2024-11-29T07:47:48,774   Found link https://files.pythonhosted.org/packages/3b/87/edda73242893e94824c14d59156de99f108fc4972a559fc94787cdef67d3/dnachisel-3.2.0.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.0
2024-11-29T07:47:48,774   Found link https://files.pythonhosted.org/packages/e1/be/1b20535a252ad97c3531cc94a0cbcecfe9d3980c67eadbea9cd3684781da/dnachisel-3.2.1.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.1
2024-11-29T07:47:48,775   Found link https://files.pythonhosted.org/packages/7d/b0/880e8b3ba71010a4feb8337b0dda950566615c5dff31993ef5ea6ad4a6a5/dnachisel-3.2.2.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.2
2024-11-29T07:47:48,775   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/0d/7a/ce563be340e997fa75d47fb9fe2f170fdb55bc326c42def8072c3e3740fe/dnachisel-3.2.3-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,776   Found link https://files.pythonhosted.org/packages/e7/4d/b56bcf7e8806d602ce9da6ca6f824ac8ddfff9156ddf8fd4a10d9a29ea85/dnachisel-3.2.3.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.3
2024-11-29T07:47:48,777   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/6d/29/5a6823ddb0180141c4c571c0c7e5133d9b3804732a7fd30c3d15560a6b9b/dnachisel-3.2.4-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,778   Found link https://files.pythonhosted.org/packages/a4/1e/ce2cc8eb3dfa9bb8d1fffbaa933adbeabaa11808aabd7389ffa08db33800/dnachisel-3.2.4.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.4
2024-11-29T07:47:48,778   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/46/87/070dbf7eb04b07d1e23edf8cfcf8478db09824238a2950ca68856f09094d/dnachisel-3.2.5-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,779   Found link https://files.pythonhosted.org/packages/fa/4a/9a55f2b32a3038cf81ea2c5b3aa17ba052dea00075aeb99e1420ce984601/dnachisel-3.2.5.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.5
2024-11-29T07:47:48,779   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/c4/92/2a245b4af17d89ff891c2430c214e00fa3ba2855bdcc938539d0c5155ca1/dnachisel-3.2.6-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,780   Found link https://files.pythonhosted.org/packages/8b/46/1489037a75121c9256d07e2abb86c07f675e94e93622e3fdedaba88d36be/dnachisel-3.2.6.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.6
2024-11-29T07:47:48,780   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/a5/87/7bbeab309a8efe4833233996cff2a3aec7d4071105d79ff59ffaac9ee185/dnachisel-3.2.7-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,781   Found link https://files.pythonhosted.org/packages/db/9d/4773a4d8d541dd21122b38e59b29f00e516d78ab6142650eea958fefa3cb/dnachisel-3.2.7.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.7
2024-11-29T07:47:48,781   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/b9/ee/ccee1dbdbc01a1e7a5bd8cf26edffc072d1cf13e72bb9c1eb27fee9c9e55/dnachisel-3.2.8-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,782   Found link https://files.pythonhosted.org/packages/5d/08/02698f76702a937a04bc26662829d0a78bbb3320dae7421bc08e91876070/dnachisel-3.2.8.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.8
2024-11-29T07:47:48,783   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/2d/03/bf2942149e149ad2e7349f118f0210b8cfcc5b2764383821934596a8bb2d/dnachisel-3.2.9-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,783   Found link https://files.pythonhosted.org/packages/f9/a6/e022b5b6c59458d86981762e8ce68847138feb47453d4055aa66ed511e62/dnachisel-3.2.9.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.9
2024-11-29T07:47:48,784   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/27/dd/90dbf7e354ed6705b3b3331cbeb9df08e150c7758a2dd91b2ad42e154e04/dnachisel-3.2.10-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,784   Found link https://files.pythonhosted.org/packages/a4/3d/e98af78449b72f3896c299afe87ae32fa01bdfe58eb1b48f7e5e22641cd8/dnachisel-3.2.10.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.10
2024-11-29T07:47:48,785   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/8c/bf/1de724d9325a3bc16ef71d34edd8fe325dac36ba575f3129c9185fe87944/dnachisel-3.2.11-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,785   Found link https://files.pythonhosted.org/packages/bc/0e/15e8406067f03d098d3d6ebec4ee0e8011e1cef12f0f83ee3f5e6b94a10f/dnachisel-3.2.11.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.11
2024-11-29T07:47:48,786   Skipping link: No binaries permitted for dnachisel: https://files.pythonhosted.org/packages/f1/a3/898fced54ac380481e183464b97ed2374a601c13f23415ceceab27798b02/dnachisel-3.2.12-py3-none-any.whl (from https://pypi.org/simple/dnachisel/)
2024-11-29T07:47:48,787   Found link https://files.pythonhosted.org/packages/fa/8c/dc6dab35ddb6962aaa2c584e74dd3c74308b5460e2d94577f64d16bf4e5c/dnachisel-3.2.12.tar.gz (from https://pypi.org/simple/dnachisel/), version: 3.2.12
2024-11-29T07:47:48,787 Fetching project page and analyzing links: https://www.piwheels.org/simple/dnachisel/
2024-11-29T07:47:48,788 Getting page https://www.piwheels.org/simple/dnachisel/
2024-11-29T07:47:48,789 Found index url https://www.piwheels.org/simple/
2024-11-29T07:47:48,956 Fetched page https://www.piwheels.org/simple/dnachisel/ as text/html
2024-11-29T07:47:48,967   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.11-py3-none-any.whl#sha256=84d6eaf40839fdc892f2575def704997d95c79626bdca219354f148eedd16349 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,967   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.10-py3-none-any.whl#sha256=48785e658a8ffeed555aeffd1771b585ce4f1bd403662d7895d4407f53aafbe0 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,968   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.9-py3-none-any.whl#sha256=608996ab2fd62fef0b648c5523a5eea47273abe30d09688e6c4cdbd04d860f31 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,968   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.8-py3-none-any.whl#sha256=be8a0c387bfba35e26223cda152136231025d08810fdbf2bba7d683af5363979 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,969   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.7-py3-none-any.whl#sha256=77baada49735e3b5e5042efc6ea5c4d92d135a531da3bebd93bb04a03cc7f106 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,969   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.6-py3-none-any.whl#sha256=f18cf0c0b1b9adc2ec228c4e894843c747b9d97937411834493ce7b8c1cd34cb (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,970   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.5-py3-none-any.whl#sha256=2e38275cc6d0113173701ec1001857c4f9006add1f0bf9aff404cf133a9c1133 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,970   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.4-py3-none-any.whl#sha256=ec718b6a514247a24193c8de61048a559f1cbfb53b9b44ceec7e4d999acc9319 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,971   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.3-py3-none-any.whl#sha256=b39ee450b925f8e2ac55e068ec919edcf504327a0613b1ecee20322402d733ab (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,971   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.2-py3-none-any.whl#sha256=8fd88781f8fff12dc05d66877be8511dc22381ddf81e8a6af24a38f0ca908f37 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,972   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.1-py3-none-any.whl#sha256=1f518024417d4e07faf2a3f0df86e3366ae03ebbd8823372499c0f6d2b8b2e14 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,972   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.2.0-py3-none-any.whl#sha256=b6144427379259a2222c0a86028fc91d14b3fc285c5b806c108a9c18845bf819 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,973   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.1.1-py3-none-any.whl#sha256=a4b2536ca2b5aa02a8ccdb112931fafdd1e4391c9f63d68f3d143de028aa4010 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,974   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.1.0-py3-none-any.whl#sha256=7904678c4af6b20044f26a7f509ab5bad72821d68bffe334210da1a8eb48bc4a (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,974   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.0.2-py3-none-any.whl#sha256=58115ebe1d7da29b468cb6cdc05a3bae282c93101066978c2054cd0d3babdd2c (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,975   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-3.0.1-py3-none-any.whl#sha256=57a7fd8d9c032e6d18c635f1f746f53fdb753766458a2fca9511435b31bd7c55 (from https://www.piwheels.org/simple/dnachisel/)
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2024-11-29T07:47:48,976   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-2.1.0-py3-none-any.whl#sha256=ea427b98b4fed6d1731ed9b2fa185e4744a9de77d65c5f780ddbaa80b947c728 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,976   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-2.0.0-py3-none-any.whl#sha256=2799a51695798ea563046dbb171683cb942ac8136e6d42fef88191e4832a0bda (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,977   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.4.1-py3-none-any.whl#sha256=da9da56d406bfa067d8faf02c38406140050aa5e5ba0760d684ffe43988d8844 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,977   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.4-py3-none-any.whl#sha256=e17788db7e9fcec27084fa66681c503f24bbc23f904a457c3af6d9f1bec2ea61 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,978   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.3-py3-none-any.whl#sha256=6b08ae208ece90496a6acb0a4878914158e137d2152fc828fe76b70a8f3a6df4 (from https://www.piwheels.org/simple/dnachisel/)
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2024-11-29T07:47:48,979   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.1-py3-none-any.whl#sha256=1124dbfdacd3f01dbe016b836d3c5e79ca62ac4437769176047d2f14ebccabbf (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,979   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.0.2-py3-none-any.whl#sha256=ccd8236c5c2939a82ea0dd54cd931f91f84fd6d2961ac64b49338c2cbe1e6885 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,980   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.0.1-py3-none-any.whl#sha256=a3fb3d33601eee16a9af6a4cad5a01e1a947229c9a48ca93b055474e7b56dc91 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,980   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-1.0.0-py3-none-any.whl#sha256=1ca314d414de531fd373ffbca511fe3aa4889f30a729d3d168bab6a4c70183cf (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,981   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.3.1-py3-none-any.whl#sha256=a598a837493f10bb61e934e4757d36025d1b5b5bb9348edff7bb57d01bf5f24f (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,982   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.3.0-py3-none-any.whl#sha256=d7b03e330c4875a043ecc1ec16106009cf894dc6b0a99b7533c49ebed878fc58 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,982   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.2.0-py3-none-any.whl#sha256=7d61c12fa3638c75829f106e9468ac1b4066b1a4b579649bdcfe3cc344c27a5d (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,983   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.9-py3-none-any.whl#sha256=6ebd850ad81d77043ba20dc582477ddb97facb34372927758a13940ee4d2d149 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,983   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.8-py3-none-any.whl#sha256=d368cca80cf9520850e8ac279a094613da09681d18bfc0e6049941a57db953b4 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,983   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.7-py3-none-any.whl#sha256=4242ba02650e57c774cabd2c1ba0284ee469461b6d2b45cb24d3a51aad5c3c36 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,984   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.6-py3-none-any.whl#sha256=4db6eabde316f2e2b9a710dc3807746a3b3beee41ae631551fc7ab409642f474 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,984   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.5-py3-none-any.whl#sha256=4998f5fcda658998de4c92777a8cac4e65e5114705110bf4d8f1086cdc8f9508 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,985   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.4-py3-none-any.whl#sha256=968fdec0d44d4ea5204340f5772c024b8e0b01b71703ac1207d2a2ff609fe4cb (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,985   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.3-py3-none-any.whl#sha256=318602f99a18c2f77eed77d7d7a31b616d7bfada029a248fb8221754d7221291 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,986   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.2-py3-none-any.whl#sha256=b177947c8b9075f7b835b9ad5f571dc895ad7f503991562de2a08d1ad0a4b74d (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,986   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.1-py3-none-any.whl#sha256=968e1a9ef253338c2e1f85f1184ee77cb9d7e089e9b009aa88d7fe8706290de8 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,987   Skipping link: No binaries permitted for dnachisel: https://www.piwheels.org/simple/dnachisel/dnachisel-0.1.0-py3-none-any.whl#sha256=1f437329a3ec8c1b3fd847a704e5185525a43b3b5fbb2370093c1d9620bed108 (from https://www.piwheels.org/simple/dnachisel/)
2024-11-29T07:47:48,987 Skipping link: not a file: https://www.piwheels.org/simple/dnachisel/
2024-11-29T07:47:48,988 Skipping link: not a file: https://pypi.org/simple/dnachisel/
2024-11-29T07:47:49,011 Given no hashes to check 1 links for project 'dnachisel': discarding no candidates
2024-11-29T07:47:49,013 Collecting dnachisel==3.2.12
2024-11-29T07:47:49,016   Created temporary directory: /tmp/pip-unpack-n8s5oysi
2024-11-29T07:47:49,240   Downloading dnachisel-3.2.12.tar.gz (1.5 MB)
2024-11-29T07:47:49,894   Added dnachisel==3.2.12 from https://files.pythonhosted.org/packages/fa/8c/dc6dab35ddb6962aaa2c584e74dd3c74308b5460e2d94577f64d16bf4e5c/dnachisel-3.2.12.tar.gz to build tracker '/tmp/pip-build-tracker-cdp0nnq3'
2024-11-29T07:47:49,896   Running setup.py (path:/tmp/pip-wheel-oafj4n66/dnachisel_f4e6ff4721704945b5790c835c17879e/setup.py) egg_info for package dnachisel
2024-11-29T07:47:49,898   Created temporary directory: /tmp/pip-pip-egg-info-vhlmiy75
2024-11-29T07:47:49,898   Preparing metadata (setup.py): started
2024-11-29T07:47:49,900   Running command python setup.py egg_info
2024-11-29T07:47:50,962   running egg_info
2024-11-29T07:47:50,989   creating /tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info
2024-11-29T07:47:50,990   writing /tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/PKG-INFO
2024-11-29T07:47:50,997   writing dependency_links to /tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/dependency_links.txt
2024-11-29T07:47:51,001   writing requirements to /tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/requires.txt
2024-11-29T07:47:51,002   writing top-level names to /tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/top_level.txt
2024-11-29T07:47:51,004   writing manifest file '/tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/SOURCES.txt'
2024-11-29T07:47:51,130   reading manifest file '/tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/SOURCES.txt'
2024-11-29T07:47:51,132   reading manifest template 'MANIFEST.in'
2024-11-29T07:47:51,165   adding license file 'LICENCE.txt'
2024-11-29T07:47:51,173   writing manifest file '/tmp/pip-pip-egg-info-vhlmiy75/dnachisel.egg-info/SOURCES.txt'
2024-11-29T07:47:51,282   Preparing metadata (setup.py): finished with status 'done'
2024-11-29T07:47:51,286   Source in /tmp/pip-wheel-oafj4n66/dnachisel_f4e6ff4721704945b5790c835c17879e has version 3.2.12, which satisfies requirement dnachisel==3.2.12 from https://files.pythonhosted.org/packages/fa/8c/dc6dab35ddb6962aaa2c584e74dd3c74308b5460e2d94577f64d16bf4e5c/dnachisel-3.2.12.tar.gz
2024-11-29T07:47:51,287   Removed dnachisel==3.2.12 from https://files.pythonhosted.org/packages/fa/8c/dc6dab35ddb6962aaa2c584e74dd3c74308b5460e2d94577f64d16bf4e5c/dnachisel-3.2.12.tar.gz from build tracker '/tmp/pip-build-tracker-cdp0nnq3'
2024-11-29T07:47:51,297 Created temporary directory: /tmp/pip-unpack-32wmbjjv
2024-11-29T07:47:51,298 Created temporary directory: /tmp/pip-unpack-zbq60crp
2024-11-29T07:47:51,298 Building wheels for collected packages: dnachisel
2024-11-29T07:47:51,302   Created temporary directory: /tmp/pip-wheel-8jjhzx46
2024-11-29T07:47:51,303   Building wheel for dnachisel (setup.py): started
2024-11-29T07:47:51,304   Destination directory: /tmp/pip-wheel-8jjhzx46
2024-11-29T07:47:51,305   Running command python setup.py bdist_wheel
2024-11-29T07:47:52,340   running bdist_wheel
2024-11-29T07:47:52,468   running build
2024-11-29T07:47:52,469   running build_py
2024-11-29T07:47:52,499   creating build/lib/dnachisel
2024-11-29T07:47:52,502   copying dnachisel/Location.py -> build/lib/dnachisel
2024-11-29T07:47:52,504   copying dnachisel/version.py -> build/lib/dnachisel
2024-11-29T07:47:52,506   copying dnachisel/__init__.py -> build/lib/dnachisel
2024-11-29T07:47:52,509   creating build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,510   copying dnachisel/SequencePattern/SequencePattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,512   copying dnachisel/SequencePattern/DnaNotationPattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,514   copying dnachisel/SequencePattern/MotifPssmPattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,516   copying dnachisel/SequencePattern/HomopolymerPattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,518   copying dnachisel/SequencePattern/EnzymeSitePattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,520   copying dnachisel/SequencePattern/__init__.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,522   copying dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/lib/dnachisel/SequencePattern
2024-11-29T07:47:52,525   creating build/lib/dnachisel/Specification
2024-11-29T07:47:52,526   copying dnachisel/Specification/Specification.py -> build/lib/dnachisel/Specification
2024-11-29T07:47:52,528   copying dnachisel/Specification/FeatureRepresentationMixin.py -> build/lib/dnachisel/Specification
2024-11-29T07:47:52,531   copying dnachisel/Specification/SpecificationSet.py -> build/lib/dnachisel/Specification
2024-11-29T07:47:52,532   copying dnachisel/Specification/__init__.py -> build/lib/dnachisel/Specification
2024-11-29T07:47:52,534   creating build/lib/dnachisel/utils
2024-11-29T07:47:52,535   copying dnachisel/utils/utils.py -> build/lib/dnachisel/utils
2024-11-29T07:47:52,537   copying dnachisel/utils/__init__.py -> build/lib/dnachisel/utils
2024-11-29T07:47:52,540   creating build/lib/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:52,541   copying dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:52,544   copying dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:52,546   copying dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/lib/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:52,547   copying dnachisel/DnaOptimizationProblem/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:52,550   creating build/lib/dnachisel/reports
2024-11-29T07:47:52,551   copying dnachisel/reports/optimization_reports.py -> build/lib/dnachisel/reports
2024-11-29T07:47:52,554   copying dnachisel/reports/SpecAnnotationsTranslator.py -> build/lib/dnachisel/reports
2024-11-29T07:47:52,556   copying dnachisel/reports/__init__.py -> build/lib/dnachisel/reports
2024-11-29T07:47:52,557   copying dnachisel/reports/colors_cycle.py -> build/lib/dnachisel/reports
2024-11-29T07:47:52,559   copying dnachisel/reports/tools.py -> build/lib/dnachisel/reports
2024-11-29T07:47:52,562   creating build/lib/dnachisel/biotools
2024-11-29T07:47:52,563   copying dnachisel/biotools/enzymes_operations.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,565   copying dnachisel/biotools/formatting_operations.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,567   copying dnachisel/biotools/sequences_differences.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,568   copying dnachisel/biotools/bowtie.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,570   copying dnachisel/biotools/gc_content.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,572   copying dnachisel/biotools/blast_sequence.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,574   copying dnachisel/biotools/sequences_operations.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,576   copying dnachisel/biotools/genbank_operations.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,578   copying dnachisel/biotools/indices_operations.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,580   copying dnachisel/biotools/__init__.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,581   copying dnachisel/biotools/biotables.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,583   copying dnachisel/biotools/random_sequences.py -> build/lib/dnachisel/biotools
2024-11-29T07:47:52,586   creating build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,587   copying dnachisel/builtin_specifications/AvoidChanges.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,590   copying dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,592   copying dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,594   copying dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,596   copying dnachisel/builtin_specifications/AvoidMatches.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,599   copying dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,600   copying dnachisel/builtin_specifications/TerminalSpecification.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,602   copying dnachisel/builtin_specifications/AvoidHairpins.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,604   copying dnachisel/builtin_specifications/AllowPrimer.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,606   copying dnachisel/builtin_specifications/EnforceChanges.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,608   copying dnachisel/builtin_specifications/CodonSpecification.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,610   copying dnachisel/builtin_specifications/EnforceTranslation.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,612   copying dnachisel/builtin_specifications/AvoidPattern.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,614   copying dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,616   copying dnachisel/builtin_specifications/EnforceSequence.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,618   copying dnachisel/builtin_specifications/AvoidStopCodons.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,620   copying dnachisel/builtin_specifications/EnforceGCContent.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,622   copying dnachisel/builtin_specifications/EnforceChoice.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,624   copying dnachisel/builtin_specifications/__init__.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,626   copying dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,628   copying dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,630   copying dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/lib/dnachisel/builtin_specifications
2024-11-29T07:47:52,632   creating build/lib/dnachisel/MutationSpace
2024-11-29T07:47:52,634   copying dnachisel/MutationSpace/MutationChoice.py -> build/lib/dnachisel/MutationSpace
2024-11-29T07:47:52,636   copying dnachisel/MutationSpace/MutationSpace.py -> build/lib/dnachisel/MutationSpace
2024-11-29T07:47:52,638   copying dnachisel/MutationSpace/__init__.py -> build/lib/dnachisel/MutationSpace
2024-11-29T07:47:52,640   creating build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,642   copying dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,644   copying dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,646   copying dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,648   copying dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,650   copying dnachisel/Specification/SpecEvaluation/__init__.py -> build/lib/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:52,653   creating build/lib/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:52,654   copying dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:52,656   copying dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:52,659   copying dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:52,660   copying dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:52,663   creating build/lib/dnachisel/reports/constraints_reports
2024-11-29T07:47:52,665   copying dnachisel/reports/constraints_reports/constraints_reports.py -> build/lib/dnachisel/reports/constraints_reports
2024-11-29T07:47:52,667   copying dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/lib/dnachisel/reports/constraints_reports
2024-11-29T07:47:52,669   copying dnachisel/reports/constraints_reports/__init__.py -> build/lib/dnachisel/reports/constraints_reports
2024-11-29T07:47:52,670   copying dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/lib/dnachisel/reports/constraints_reports
2024-11-29T07:47:52,674   creating build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,675   copying dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,678   copying dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,681   copying dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,684   copying dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,688   copying dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,691   copying dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,695   copying dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/lib/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:52,697   running egg_info
2024-11-29T07:47:52,724   writing dnachisel.egg-info/PKG-INFO
2024-11-29T07:47:52,731   writing dependency_links to dnachisel.egg-info/dependency_links.txt
2024-11-29T07:47:52,735   writing requirements to dnachisel.egg-info/requires.txt
2024-11-29T07:47:52,736   writing top-level names to dnachisel.egg-info/top_level.txt
2024-11-29T07:47:52,780   reading manifest file 'dnachisel.egg-info/SOURCES.txt'
2024-11-29T07:47:52,794   reading manifest template 'MANIFEST.in'
2024-11-29T07:47:52,826   adding license file 'LICENCE.txt'
2024-11-29T07:47:52,836   writing manifest file 'dnachisel.egg-info/SOURCES.txt'
2024-11-29T07:47:52,839   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'dnachisel.biotools.data' is absent from the `packages` configuration.
2024-11-29T07:47:52,840   !!

2024-11-29T07:47:52,841           ********************************************************************************
2024-11-29T07:47:52,844           ############################
2024-11-29T07:47:52,845           # Package would be ignored #
2024-11-29T07:47:52,846           ############################
2024-11-29T07:47:52,846           Python recognizes 'dnachisel.biotools.data' as an importable package[^1],
2024-11-29T07:47:52,847           but it is absent from setuptools' `packages` configuration.

2024-11-29T07:47:52,848           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-29T07:47:52,848           package, please make sure that 'dnachisel.biotools.data' is explicitly added
2024-11-29T07:47:52,849           to the `packages` configuration field.

2024-11-29T07:47:52,850           Alternatively, you can also rely on setuptools' discovery methods
2024-11-29T07:47:52,851           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-29T07:47:52,851           instead of `find_packages(...)`/`find:`).

2024-11-29T07:47:52,853           You can read more about "package discovery" on setuptools documentation page:

2024-11-29T07:47:52,854           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-29T07:47:52,855           If you don't want 'dnachisel.biotools.data' to be distributed and are
2024-11-29T07:47:52,855           already explicitly excluding 'dnachisel.biotools.data' via
2024-11-29T07:47:52,856           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-29T07:47:52,856           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-29T07:47:52,857           combination with a more fine grained `package-data` configuration.

2024-11-29T07:47:52,858           You can read more about "package data files" on setuptools documentation page:

2024-11-29T07:47:52,859           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-29T07:47:52,861           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-29T07:47:52,861                 even if it does not contain any `.py` files.
2024-11-29T07:47:52,862                 On the other hand, currently there is no concept of package data
2024-11-29T07:47:52,862                 directory, all directories are treated like packages.
2024-11-29T07:47:52,863           ********************************************************************************

2024-11-29T07:47:52,864   !!
2024-11-29T07:47:52,865     check.warn(importable)
2024-11-29T07:47:52,865   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'dnachisel.reports.assets' is absent from the `packages` configuration.
2024-11-29T07:47:52,866   !!

2024-11-29T07:47:52,867           ********************************************************************************
2024-11-29T07:47:52,867           ############################
2024-11-29T07:47:52,868           # Package would be ignored #
2024-11-29T07:47:52,868           ############################
2024-11-29T07:47:52,869           Python recognizes 'dnachisel.reports.assets' as an importable package[^1],
2024-11-29T07:47:52,869           but it is absent from setuptools' `packages` configuration.

2024-11-29T07:47:52,870           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-29T07:47:52,871           package, please make sure that 'dnachisel.reports.assets' is explicitly added
2024-11-29T07:47:52,871           to the `packages` configuration field.

2024-11-29T07:47:52,872           Alternatively, you can also rely on setuptools' discovery methods
2024-11-29T07:47:52,873           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-29T07:47:52,873           instead of `find_packages(...)`/`find:`).

2024-11-29T07:47:52,874           You can read more about "package discovery" on setuptools documentation page:

2024-11-29T07:47:52,875           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-29T07:47:52,877           If you don't want 'dnachisel.reports.assets' to be distributed and are
2024-11-29T07:47:52,877           already explicitly excluding 'dnachisel.reports.assets' via
2024-11-29T07:47:52,878           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-29T07:47:52,879           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-29T07:47:52,879           combination with a more fine grained `package-data` configuration.

2024-11-29T07:47:52,881           You can read more about "package data files" on setuptools documentation page:

2024-11-29T07:47:52,882           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-29T07:47:52,884           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-29T07:47:52,884                 even if it does not contain any `.py` files.
2024-11-29T07:47:52,885                 On the other hand, currently there is no concept of package data
2024-11-29T07:47:52,886                 directory, all directories are treated like packages.
2024-11-29T07:47:52,886           ********************************************************************************

2024-11-29T07:47:52,887   !!
2024-11-29T07:47:52,888     check.warn(importable)
2024-11-29T07:47:52,888   creating build/lib/dnachisel/reports/assets
2024-11-29T07:47:52,889   copying dnachisel/reports/assets/logo.png -> build/lib/dnachisel/reports/assets
2024-11-29T07:47:52,889   copying dnachisel/reports/assets/optimization_report.pug -> build/lib/dnachisel/reports/assets
2024-11-29T07:47:52,890   copying dnachisel/reports/assets/style.css -> build/lib/dnachisel/reports/assets
2024-11-29T07:47:52,890   creating build/lib/dnachisel/biotools/data
2024-11-29T07:47:52,890   copying dnachisel/biotools/data/README.md -> build/lib/dnachisel/biotools/data
2024-11-29T07:47:52,891   copying dnachisel/biotools/data/complements.csv -> build/lib/dnachisel/biotools/data
2024-11-29T07:47:52,891   copying dnachisel/biotools/data/iupac_notation.csv -> build/lib/dnachisel/biotools/data
2024-11-29T07:47:52,892   copying dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/lib/dnachisel/biotools/data
2024-11-29T07:47:52,892   running build_scripts
2024-11-29T07:47:52,893   creating build/scripts-3.11
2024-11-29T07:47:52,893   copying and adjusting scripts/dnachisel -> build/scripts-3.11
2024-11-29T07:47:52,894   changing mode of build/scripts-3.11/dnachisel from 644 to 755
2024-11-29T07:47:52,919   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-29T07:47:52,919   !!

2024-11-29T07:47:52,920           ********************************************************************************
2024-11-29T07:47:52,921           Please avoid running ``setup.py`` directly.
2024-11-29T07:47:52,921           Instead, use pypa/build, pypa/installer or other
2024-11-29T07:47:52,922           standards-based tools.

2024-11-29T07:47:52,923           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-29T07:47:52,923           ********************************************************************************

2024-11-29T07:47:52,925   !!
2024-11-29T07:47:52,925     self.initialize_options()
2024-11-29T07:47:52,948   installing to build/bdist.linux-armv7l/wheel
2024-11-29T07:47:52,949   running install
2024-11-29T07:47:52,974   running install_lib
2024-11-29T07:47:53,003   creating build/bdist.linux-armv7l/wheel
2024-11-29T07:47:53,005   creating build/bdist.linux-armv7l/wheel/dnachisel
2024-11-29T07:47:53,007   creating build/bdist.linux-armv7l/wheel/dnachisel/SequencePattern
2024-11-29T07:47:53,008   copying build/lib/dnachisel/SequencePattern/SequencePattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,011   copying build/lib/dnachisel/SequencePattern/DnaNotationPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,012   copying build/lib/dnachisel/SequencePattern/MotifPssmPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,014   copying build/lib/dnachisel/SequencePattern/HomopolymerPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,016   copying build/lib/dnachisel/SequencePattern/EnzymeSitePattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,018   copying build/lib/dnachisel/SequencePattern/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,020   copying build/lib/dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/SequencePattern
2024-11-29T07:47:53,022   copying build/lib/dnachisel/Location.py -> build/bdist.linux-armv7l/wheel/./dnachisel
2024-11-29T07:47:53,025   creating build/bdist.linux-armv7l/wheel/dnachisel/Specification
2024-11-29T07:47:53,026   copying build/lib/dnachisel/Specification/Specification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification
2024-11-29T07:47:53,028   copying build/lib/dnachisel/Specification/FeatureRepresentationMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification
2024-11-29T07:47:53,031   creating build/bdist.linux-armv7l/wheel/dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,032   copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,034   copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,036   copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,039   copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,041   copying build/lib/dnachisel/Specification/SpecEvaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification/SpecEvaluation
2024-11-29T07:47:53,042   copying build/lib/dnachisel/Specification/SpecificationSet.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification
2024-11-29T07:47:53,044   copying build/lib/dnachisel/Specification/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/Specification
2024-11-29T07:47:53,046   copying build/lib/dnachisel/version.py -> build/bdist.linux-armv7l/wheel/./dnachisel
2024-11-29T07:47:53,048   creating build/bdist.linux-armv7l/wheel/dnachisel/utils
2024-11-29T07:47:53,049   copying build/lib/dnachisel/utils/utils.py -> build/bdist.linux-armv7l/wheel/./dnachisel/utils
2024-11-29T07:47:53,052   copying build/lib/dnachisel/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/utils
2024-11-29T07:47:53,054   creating build/bdist.linux-armv7l/wheel/dnachisel/DnaOptimizationProblem
2024-11-29T07:47:53,055   copying build/lib/dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem
2024-11-29T07:47:53,058   copying build/lib/dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem
2024-11-29T07:47:53,060   copying build/lib/dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem
2024-11-29T07:47:53,062   creating build/bdist.linux-armv7l/wheel/dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:53,063   copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:53,066   copying build/lib/dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:53,068   copying build/lib/dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:53,070   copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem/mixins
2024-11-29T07:47:53,072   copying build/lib/dnachisel/DnaOptimizationProblem/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/DnaOptimizationProblem
2024-11-29T07:47:53,074   creating build/bdist.linux-armv7l/wheel/dnachisel/reports
2024-11-29T07:47:53,076   copying build/lib/dnachisel/reports/optimization_reports.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports
2024-11-29T07:47:53,079   creating build/bdist.linux-armv7l/wheel/dnachisel/reports/assets
2024-11-29T07:47:53,080   copying build/lib/dnachisel/reports/assets/style.css -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets
2024-11-29T07:47:53,082   copying build/lib/dnachisel/reports/assets/optimization_report.pug -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets
2024-11-29T07:47:53,084   copying build/lib/dnachisel/reports/assets/logo.png -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/assets
2024-11-29T07:47:53,086   copying build/lib/dnachisel/reports/SpecAnnotationsTranslator.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports
2024-11-29T07:47:53,089   creating build/bdist.linux-armv7l/wheel/dnachisel/reports/constraints_reports
2024-11-29T07:47:53,090   copying build/lib/dnachisel/reports/constraints_reports/constraints_reports.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports
2024-11-29T07:47:53,092   copying build/lib/dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports
2024-11-29T07:47:53,094   copying build/lib/dnachisel/reports/constraints_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports
2024-11-29T07:47:53,096   copying build/lib/dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports/constraints_reports
2024-11-29T07:47:53,098   copying build/lib/dnachisel/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports
2024-11-29T07:47:53,100   copying build/lib/dnachisel/reports/colors_cycle.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports
2024-11-29T07:47:53,102   copying build/lib/dnachisel/reports/tools.py -> build/bdist.linux-armv7l/wheel/./dnachisel/reports
2024-11-29T07:47:53,104   creating build/bdist.linux-armv7l/wheel/dnachisel/biotools
2024-11-29T07:47:53,105   copying build/lib/dnachisel/biotools/enzymes_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,107   creating build/bdist.linux-armv7l/wheel/dnachisel/biotools/data
2024-11-29T07:47:53,109   copying build/lib/dnachisel/biotools/data/iupac_notation.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data
2024-11-29T07:47:53,111   copying build/lib/dnachisel/biotools/data/README.md -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data
2024-11-29T07:47:53,112   copying build/lib/dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data
2024-11-29T07:47:53,114   copying build/lib/dnachisel/biotools/data/complements.csv -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools/data
2024-11-29T07:47:53,116   copying build/lib/dnachisel/biotools/formatting_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,118   copying build/lib/dnachisel/biotools/sequences_differences.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,120   copying build/lib/dnachisel/biotools/bowtie.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,122   copying build/lib/dnachisel/biotools/gc_content.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,124   copying build/lib/dnachisel/biotools/blast_sequence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,126   copying build/lib/dnachisel/biotools/sequences_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,128   copying build/lib/dnachisel/biotools/genbank_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,130   copying build/lib/dnachisel/biotools/indices_operations.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,132   copying build/lib/dnachisel/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,134   copying build/lib/dnachisel/biotools/biotables.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,136   copying build/lib/dnachisel/biotools/random_sequences.py -> build/bdist.linux-armv7l/wheel/./dnachisel/biotools
2024-11-29T07:47:53,138   copying build/lib/dnachisel/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel
2024-11-29T07:47:53,141   creating build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications
2024-11-29T07:47:53,142   copying build/lib/dnachisel/builtin_specifications/AvoidChanges.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,144   copying build/lib/dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,146   copying build/lib/dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,149   copying build/lib/dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,151   copying build/lib/dnachisel/builtin_specifications/AvoidMatches.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,153   copying build/lib/dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,155   creating build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,157   copying build/lib/dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,159   copying build/lib/dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,161   copying build/lib/dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,163   copying build/lib/dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,166   copying build/lib/dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,168   copying build/lib/dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,170   copying build/lib/dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications/codon_optimization
2024-11-29T07:47:53,172   copying build/lib/dnachisel/builtin_specifications/TerminalSpecification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,174   copying build/lib/dnachisel/builtin_specifications/AvoidHairpins.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,176   copying build/lib/dnachisel/builtin_specifications/AllowPrimer.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,178   copying build/lib/dnachisel/builtin_specifications/EnforceChanges.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,180   copying build/lib/dnachisel/builtin_specifications/CodonSpecification.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,182   copying build/lib/dnachisel/builtin_specifications/EnforceTranslation.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,184   copying build/lib/dnachisel/builtin_specifications/AvoidPattern.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,186   copying build/lib/dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,188   copying build/lib/dnachisel/builtin_specifications/EnforceSequence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,191   copying build/lib/dnachisel/builtin_specifications/AvoidStopCodons.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,193   copying build/lib/dnachisel/builtin_specifications/EnforceGCContent.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,195   copying build/lib/dnachisel/builtin_specifications/EnforceChoice.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,197   copying build/lib/dnachisel/builtin_specifications/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,199   copying build/lib/dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,201   copying build/lib/dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,203   copying build/lib/dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/bdist.linux-armv7l/wheel/./dnachisel/builtin_specifications
2024-11-29T07:47:53,206   creating build/bdist.linux-armv7l/wheel/dnachisel/MutationSpace
2024-11-29T07:47:53,207   copying build/lib/dnachisel/MutationSpace/MutationChoice.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace
2024-11-29T07:47:53,209   copying build/lib/dnachisel/MutationSpace/MutationSpace.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace
2024-11-29T07:47:53,211   copying build/lib/dnachisel/MutationSpace/__init__.py -> build/bdist.linux-armv7l/wheel/./dnachisel/MutationSpace
2024-11-29T07:47:53,213   running install_egg_info
2024-11-29T07:47:53,259   Copying dnachisel.egg-info to build/bdist.linux-armv7l/wheel/./dnachisel-3.2.12-py3.11.egg-info
2024-11-29T07:47:53,272   running install_scripts
2024-11-29T07:47:53,273   creating build/bdist.linux-armv7l/wheel/dnachisel-3.2.12.data/scripts
2024-11-29T07:47:53,276   copying build/scripts-3.11/dnachisel -> build/bdist.linux-armv7l/wheel/dnachisel-3.2.12.data/scripts
2024-11-29T07:47:53,278   changing mode of build/bdist.linux-armv7l/wheel/dnachisel-3.2.12.data/scripts/dnachisel to 755
2024-11-29T07:47:53,299   creating build/bdist.linux-armv7l/wheel/dnachisel-3.2.12.dist-info/WHEEL
2024-11-29T07:47:53,302   creating '/tmp/pip-wheel-8jjhzx46/dnachisel-3.2.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-29T07:47:53,306   adding 'dnachisel/Location.py'
2024-11-29T07:47:53,308   adding 'dnachisel/__init__.py'
2024-11-29T07:47:53,310   adding 'dnachisel/version.py'
2024-11-29T07:47:53,313   adding 'dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py'
2024-11-29T07:47:53,316   adding 'dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py'
2024-11-29T07:47:53,318   adding 'dnachisel/DnaOptimizationProblem/NoSolutionError.py'
2024-11-29T07:47:53,319   adding 'dnachisel/DnaOptimizationProblem/__init__.py'
2024-11-29T07:47:53,322   adding 'dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py'
2024-11-29T07:47:53,323   adding 'dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py'
2024-11-29T07:47:53,325   adding 'dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py'
2024-11-29T07:47:53,326   adding 'dnachisel/DnaOptimizationProblem/mixins/__init__.py'
2024-11-29T07:47:53,328   adding 'dnachisel/MutationSpace/MutationChoice.py'
2024-11-29T07:47:53,330   adding 'dnachisel/MutationSpace/MutationSpace.py'
2024-11-29T07:47:53,332   adding 'dnachisel/MutationSpace/__init__.py'
2024-11-29T07:47:53,333   adding 'dnachisel/SequencePattern/DnaNotationPattern.py'
2024-11-29T07:47:53,335   adding 'dnachisel/SequencePattern/EnzymeSitePattern.py'
2024-11-29T07:47:53,336   adding 'dnachisel/SequencePattern/HomopolymerPattern.py'
2024-11-29T07:47:53,338   adding 'dnachisel/SequencePattern/MotifPssmPattern.py'
2024-11-29T07:47:53,339   adding 'dnachisel/SequencePattern/RepeatedKmerPattern.py'
2024-11-29T07:47:53,340   adding 'dnachisel/SequencePattern/SequencePattern.py'
2024-11-29T07:47:53,342   adding 'dnachisel/SequencePattern/__init__.py'
2024-11-29T07:47:53,344   adding 'dnachisel/Specification/FeatureRepresentationMixin.py'
2024-11-29T07:47:53,345   adding 'dnachisel/Specification/Specification.py'
2024-11-29T07:47:53,347   adding 'dnachisel/Specification/SpecificationSet.py'
2024-11-29T07:47:53,348   adding 'dnachisel/Specification/__init__.py'
2024-11-29T07:47:53,349   adding 'dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py'
2024-11-29T07:47:53,351   adding 'dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py'
2024-11-29T07:47:53,352   adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluation.py'
2024-11-29T07:47:53,354   adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluations.py'
2024-11-29T07:47:53,355   adding 'dnachisel/Specification/SpecEvaluation/__init__.py'
2024-11-29T07:47:53,356   adding 'dnachisel/biotools/__init__.py'
2024-11-29T07:47:53,358   adding 'dnachisel/biotools/biotables.py'
2024-11-29T07:47:53,359   adding 'dnachisel/biotools/blast_sequence.py'
2024-11-29T07:47:53,360   adding 'dnachisel/biotools/bowtie.py'
2024-11-29T07:47:53,362   adding 'dnachisel/biotools/enzymes_operations.py'
2024-11-29T07:47:53,363   adding 'dnachisel/biotools/formatting_operations.py'
2024-11-29T07:47:53,364   adding 'dnachisel/biotools/gc_content.py'
2024-11-29T07:47:53,366   adding 'dnachisel/biotools/genbank_operations.py'
2024-11-29T07:47:53,367   adding 'dnachisel/biotools/indices_operations.py'
2024-11-29T07:47:53,368   adding 'dnachisel/biotools/random_sequences.py'
2024-11-29T07:47:53,369   adding 'dnachisel/biotools/sequences_differences.py'
2024-11-29T07:47:53,371   adding 'dnachisel/biotools/sequences_operations.py'
2024-11-29T07:47:53,373   adding 'dnachisel/biotools/data/README.md'
2024-11-29T07:47:53,374   adding 'dnachisel/biotools/data/complements.csv'
2024-11-29T07:47:53,375   adding 'dnachisel/biotools/data/iupac_notation.csv'
2024-11-29T07:47:53,376   adding 'dnachisel/biotools/data/nucleotide_to_regexpr.csv'
2024-11-29T07:47:53,378   adding 'dnachisel/builtin_specifications/AllowPrimer.py'
2024-11-29T07:47:53,380   adding 'dnachisel/builtin_specifications/AvoidBlastMatches.py'
2024-11-29T07:47:53,381   adding 'dnachisel/builtin_specifications/AvoidChanges.py'
2024-11-29T07:47:53,382   adding 'dnachisel/builtin_specifications/AvoidHairpins.py'
2024-11-29T07:47:53,384   adding 'dnachisel/builtin_specifications/AvoidHeterodimerization.py'
2024-11-29T07:47:53,385   adding 'dnachisel/builtin_specifications/AvoidMatches.py'
2024-11-29T07:47:53,387   adding 'dnachisel/builtin_specifications/AvoidPattern.py'
2024-11-29T07:47:53,388   adding 'dnachisel/builtin_specifications/AvoidStopCodons.py'
2024-11-29T07:47:53,389   adding 'dnachisel/builtin_specifications/CodonSpecification.py'
2024-11-29T07:47:53,391   adding 'dnachisel/builtin_specifications/EnforceChanges.py'
2024-11-29T07:47:53,393   adding 'dnachisel/builtin_specifications/EnforceChoice.py'
2024-11-29T07:47:53,394   adding 'dnachisel/builtin_specifications/EnforceGCContent.py'
2024-11-29T07:47:53,396   adding 'dnachisel/builtin_specifications/EnforceMeltingTemperature.py'
2024-11-29T07:47:53,398   adding 'dnachisel/builtin_specifications/EnforcePatternOccurence.py'
2024-11-29T07:47:53,399   adding 'dnachisel/builtin_specifications/EnforceRegionsCompatibility.py'
2024-11-29T07:47:53,400   adding 'dnachisel/builtin_specifications/EnforceSequence.py'
2024-11-29T07:47:53,402   adding 'dnachisel/builtin_specifications/EnforceTerminalGCContent.py'
2024-11-29T07:47:53,403   adding 'dnachisel/builtin_specifications/EnforceTranslation.py'
2024-11-29T07:47:53,405   adding 'dnachisel/builtin_specifications/SequenceLengthBounds.py'
2024-11-29T07:47:53,406   adding 'dnachisel/builtin_specifications/TerminalSpecification.py'
2024-11-29T07:47:53,408   adding 'dnachisel/builtin_specifications/UniquifyAllKmers.py'
2024-11-29T07:47:53,410   adding 'dnachisel/builtin_specifications/__init__.py'
2024-11-29T07:47:53,412   adding 'dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py'
2024-11-29T07:47:53,413   adding 'dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py'
2024-11-29T07:47:53,414   adding 'dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py'
2024-11-29T07:47:53,416   adding 'dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py'
2024-11-29T07:47:53,417   adding 'dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py'
2024-11-29T07:47:53,419   adding 'dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py'
2024-11-29T07:47:53,420   adding 'dnachisel/builtin_specifications/codon_optimization/__init__.py'
2024-11-29T07:47:53,422   adding 'dnachisel/reports/SpecAnnotationsTranslator.py'
2024-11-29T07:47:53,423   adding 'dnachisel/reports/__init__.py'
2024-11-29T07:47:53,424   adding 'dnachisel/reports/colors_cycle.py'
2024-11-29T07:47:53,426   adding 'dnachisel/reports/optimization_reports.py'
2024-11-29T07:47:53,427   adding 'dnachisel/reports/tools.py'
2024-11-29T07:47:53,431   adding 'dnachisel/reports/assets/logo.png'
2024-11-29T07:47:53,432   adding 'dnachisel/reports/assets/optimization_report.pug'
2024-11-29T07:47:53,433   adding 'dnachisel/reports/assets/style.css'
2024-11-29T07:47:53,435   adding 'dnachisel/reports/constraints_reports/GraphicTranslator.py'
2024-11-29T07:47:53,436   adding 'dnachisel/reports/constraints_reports/__init__.py'
2024-11-29T07:47:53,437   adding 'dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py'
2024-11-29T07:47:53,439   adding 'dnachisel/reports/constraints_reports/constraints_reports.py'
2024-11-29T07:47:53,440   adding 'dnachisel/utils/__init__.py'
2024-11-29T07:47:53,441   adding 'dnachisel/utils/utils.py'
2024-11-29T07:47:53,444   adding 'dnachisel-3.2.12.data/scripts/dnachisel'
2024-11-29T07:47:53,446   adding 'dnachisel-3.2.12.dist-info/LICENCE.txt'
2024-11-29T07:47:53,447   adding 'dnachisel-3.2.12.dist-info/METADATA'
2024-11-29T07:47:53,448   adding 'dnachisel-3.2.12.dist-info/WHEEL'
2024-11-29T07:47:53,449   adding 'dnachisel-3.2.12.dist-info/top_level.txt'
2024-11-29T07:47:53,451   adding 'dnachisel-3.2.12.dist-info/RECORD'
2024-11-29T07:47:53,455   removing build/bdist.linux-armv7l/wheel
2024-11-29T07:47:53,589   Building wheel for dnachisel (setup.py): finished with status 'done'
2024-11-29T07:47:53,593   Created wheel for dnachisel: filename=dnachisel-3.2.12-py3-none-any.whl size=146794 sha256=caaf175b05d1027048ca1de195928e8cf4b3b9cc66d2858bdfe33e2fc2e03d18
2024-11-29T07:47:53,595   Stored in directory: /tmp/pip-ephem-wheel-cache-8ekfx36k/wheels/6f/47/c9/405a1f4b62de789fb5fceac02a21aa34229b7f603cd6efd258
2024-11-29T07:47:53,608 Successfully built dnachisel
2024-11-29T07:47:53,614 Removed build tracker: '/tmp/pip-build-tracker-cdp0nnq3'