2024-12-03T03:11:06,723 Created temporary directory: /tmp/pip-build-tracker-e1ft0nfl
2024-12-03T03:11:06,724 Initialized build tracking at /tmp/pip-build-tracker-e1ft0nfl
2024-12-03T03:11:06,725 Created build tracker: /tmp/pip-build-tracker-e1ft0nfl
2024-12-03T03:11:06,725 Entered build tracker: /tmp/pip-build-tracker-e1ft0nfl
2024-12-03T03:11:06,726 Created temporary directory: /tmp/pip-wheel-illdkdkl
2024-12-03T03:11:06,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-uaxd4km9
2024-12-03T03:11:06,774 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-03T03:11:06,777 2 location(s) to search for versions of scunagi:
2024-12-03T03:11:06,777 * https://pypi.org/simple/scunagi/
2024-12-03T03:11:06,777 * https://www.piwheels.org/simple/scunagi/
2024-12-03T03:11:06,777 Fetching project page and analyzing links: https://pypi.org/simple/scunagi/
2024-12-03T03:11:06,778 Getting page https://pypi.org/simple/scunagi/
2024-12-03T03:11:06,780 Found index url https://pypi.org/simple/
2024-12-03T03:11:06,997 Fetched page https://pypi.org/simple/scunagi/ as application/vnd.pypi.simple.v1+json
2024-12-03T03:11:07,002   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/4e/47/f8eadc592806973940740a9417892ce5e870b13f3140d5462b6469f5df29/scUNAGI-0.1-py3-none-any.whl (from https://pypi.org/simple/scunagi/)
2024-12-03T03:11:07,003   Found link https://files.pythonhosted.org/packages/e1/f1/0de90828615ce729086b0bd0040d92816d065d709b8d4cf23aa83212bd12/scUNAGI-0.1.tar.gz (from https://pypi.org/simple/scunagi/), version: 0.1
2024-12-03T03:11:07,003   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/0d/bb/b041310d772ca981d03120f181c4755f44bc2e4088fdd8c19b3f194149cb/scUNAGI-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9)
2024-12-03T03:11:07,004   Found link https://files.pythonhosted.org/packages/1f/61/ec3d902cc92513faac987d3c96132bca48c123c8367652adb9680071cd26/scUNAGI-0.1.1.tar.gz (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9), version: 0.1.1
2024-12-03T03:11:07,005   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/a1/50/e3172e3800ea043d94ef312db9211b7ebe03d044709ca7ffe5bfe736765c/scUNAGI-0.2-py3-none-any.whl (from https://pypi.org/simple/scunagi/)
2024-12-03T03:11:07,006   Found link https://files.pythonhosted.org/packages/27/25/685283d6b4b5c35f39f23f234c4b69ceb58cfe44d5847fb370d65014efc7/scUNAGI-0.2.tar.gz (from https://pypi.org/simple/scunagi/), version: 0.2
2024-12-03T03:11:07,007   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/75/b1/9ff8fa54ba5a2e2a0102fb3367a6bc4d47606149789cce7f708c9e1ca50b/scUNAGI-0.2.2-py3-none-any.whl (from https://pypi.org/simple/scunagi/)
2024-12-03T03:11:07,008   Found link https://files.pythonhosted.org/packages/56/fc/f64940990310421351ca9414457163eae58f1e9203baf8d1e9c57b606f90/scUNAGI-0.2.2.tar.gz (from https://pypi.org/simple/scunagi/), version: 0.2.2
2024-12-03T03:11:07,008   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/a5/83/521b24d3447fffa8ac0d457271b83a73afeb6e504d97f717554d37b14b3e/scUNAGI-0.2.3-py3-none-any.whl (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9)
2024-12-03T03:11:07,009   Found link https://files.pythonhosted.org/packages/8a/40/03fa3a1a80bdd93652f14ba230ee730619b2c313e0062c0c577e136128f1/scUNAGI-0.2.3.tar.gz (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9), version: 0.2.3
2024-12-03T03:11:07,010   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/97/f1/dddf6a6adea2876f2a15d2497e49c6be90d0635eee858fa599d714c54449/scUNAGI-0.3.0-py3-none-any.whl (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9)
2024-12-03T03:11:07,011   Found link https://files.pythonhosted.org/packages/9b/f1/6c9ddf15ecf960f35e057dcdee9af5eba0d924b24f5a096c3828c0a89ff8/scunagi-0.3.0.tar.gz (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9), version: 0.3.0
2024-12-03T03:11:07,012   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/b0/ec/bb93d0e406214ab78c670676962f30691f31f7c1964d1d0410dd95b00e70/scUNAGI-0.4.0-py3-none-any.whl (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9)
2024-12-03T03:11:07,013   Found link https://files.pythonhosted.org/packages/e7/6e/9e42231afa1a42dc43fff926d723ee50f98192adafc0e65f40ae4d218521/scUNAGI-0.4.0.tar.gz (from https://pypi.org/simple/scunagi/) (requires-python:>=3.9), version: 0.4.0
2024-12-03T03:11:07,014   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/c7/f8/7a87adba85d561b625edfaed2f57642ec5fb48fc7626645298dd92854306/scUNAGI-0.5.0-py3-none-any.whl (from https://pypi.org/simple/scunagi/)
2024-12-03T03:11:07,014   Found link https://files.pythonhosted.org/packages/da/2b/67960203de3c86d8401765dd3a0a427721dfb57b9aaa69f859a5408a5a83/scunagi-0.5.0.tar.gz (from https://pypi.org/simple/scunagi/), version: 0.5.0
2024-12-03T03:11:07,015   Skipping link: No binaries permitted for scunagi: https://files.pythonhosted.org/packages/e4/b8/7fe478bc9e1601e5e9167dc7a016917cf77592ea2dcd231de8d6a0e171f4/scUNAGI-0.5.1-py3-none-any.whl (from https://pypi.org/simple/scunagi/)
2024-12-03T03:11:07,015   Found link https://files.pythonhosted.org/packages/65/78/4705b37b7c895b2f43178c4b5ebe96a9a20b45b4edebda419e0e76194c88/scunagi-0.5.1.tar.gz (from https://pypi.org/simple/scunagi/), version: 0.5.1
2024-12-03T03:11:07,016 Fetching project page and analyzing links: https://www.piwheels.org/simple/scunagi/
2024-12-03T03:11:07,017 Getting page https://www.piwheels.org/simple/scunagi/
2024-12-03T03:11:07,018 Found index url https://www.piwheels.org/simple/
2024-12-03T03:11:07,181 Fetched page https://www.piwheels.org/simple/scunagi/ as text/html
2024-12-03T03:11:07,183   Skipping link: No binaries permitted for scunagi: https://www.piwheels.org/simple/scunagi/scUNAGI-0.2.2-py3-none-any.whl#sha256=7e108ae46749a9bc7ac79a203b412eb58d6ace52ce103f1ae5f48fe3a6d44f8b (from https://www.piwheels.org/simple/scunagi/)
2024-12-03T03:11:07,184   Skipping link: No binaries permitted for scunagi: https://www.piwheels.org/simple/scunagi/scUNAGI-0.2-py3-none-any.whl#sha256=e8111234b02add4b4fb4a5b5318c0a308a10633470a5e82a7d3d423438ae509f (from https://www.piwheels.org/simple/scunagi/)
2024-12-03T03:11:07,185   Skipping link: No binaries permitted for scunagi: https://www.piwheels.org/simple/scunagi/scUNAGI-0.1-py3-none-any.whl#sha256=129a6ea06ac3e3c1826b3ac39feecff520c456e5688369ffda9c947f39b3a591 (from https://www.piwheels.org/simple/scunagi/)
2024-12-03T03:11:07,186 Skipping link: not a file: https://www.piwheels.org/simple/scunagi/
2024-12-03T03:11:07,186 Skipping link: not a file: https://pypi.org/simple/scunagi/
2024-12-03T03:11:07,206 Given no hashes to check 1 links for project 'scunagi': discarding no candidates
2024-12-03T03:11:07,208 Collecting scunagi==0.5.0
2024-12-03T03:11:07,210   Created temporary directory: /tmp/pip-unpack-d56aaer8
2024-12-03T03:11:07,463   Downloading scunagi-0.5.0.tar.gz (7.0 MB)
2024-12-03T03:11:12,610   Added scunagi==0.5.0 from https://files.pythonhosted.org/packages/da/2b/67960203de3c86d8401765dd3a0a427721dfb57b9aaa69f859a5408a5a83/scunagi-0.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-e1ft0nfl'
2024-12-03T03:11:12,613   Running setup.py (path:/tmp/pip-wheel-illdkdkl/scunagi_c7ce8cb7436f486daeb0d48931494308/setup.py) egg_info for package scunagi
2024-12-03T03:11:12,614   Created temporary directory: /tmp/pip-pip-egg-info-nif8qj2x
2024-12-03T03:11:12,615   Preparing metadata (setup.py): started
2024-12-03T03:11:12,616   Running command python setup.py egg_info
2024-12-03T03:11:13,923   running egg_info
2024-12-03T03:11:13,950   creating /tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info
2024-12-03T03:11:13,951   writing /tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/PKG-INFO
2024-12-03T03:11:13,955   writing dependency_links to /tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/dependency_links.txt
2024-12-03T03:11:13,959   writing requirements to /tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/requires.txt
2024-12-03T03:11:13,960   writing top-level names to /tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/top_level.txt
2024-12-03T03:11:13,962   writing manifest file '/tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/SOURCES.txt'
2024-12-03T03:11:14,058   reading manifest file '/tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/SOURCES.txt'
2024-12-03T03:11:14,060   reading manifest template 'MANIFEST.in'
2024-12-03T03:11:14,061   warning: no files found matching 'LICENSE'
2024-12-03T03:11:14,062   adding license file 'LICENSE.txt'
2024-12-03T03:11:14,065   writing manifest file '/tmp/pip-pip-egg-info-nif8qj2x/scUNAGI.egg-info/SOURCES.txt'
2024-12-03T03:11:14,174   Preparing metadata (setup.py): finished with status 'done'
2024-12-03T03:11:14,179   Source in /tmp/pip-wheel-illdkdkl/scunagi_c7ce8cb7436f486daeb0d48931494308 has version 0.5.0, which satisfies requirement scunagi==0.5.0 from https://files.pythonhosted.org/packages/da/2b/67960203de3c86d8401765dd3a0a427721dfb57b9aaa69f859a5408a5a83/scunagi-0.5.0.tar.gz
2024-12-03T03:11:14,180   Removed scunagi==0.5.0 from https://files.pythonhosted.org/packages/da/2b/67960203de3c86d8401765dd3a0a427721dfb57b9aaa69f859a5408a5a83/scunagi-0.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-e1ft0nfl'
2024-12-03T03:11:14,197 Created temporary directory: /tmp/pip-unpack-yoo67ikl
2024-12-03T03:11:14,198 Created temporary directory: /tmp/pip-unpack-6h1fobyn
2024-12-03T03:11:14,199 Building wheels for collected packages: scunagi
2024-12-03T03:11:14,203   Created temporary directory: /tmp/pip-wheel-42vezdej
2024-12-03T03:11:14,204   Building wheel for scunagi (setup.py): started
2024-12-03T03:11:14,205   Destination directory: /tmp/pip-wheel-42vezdej
2024-12-03T03:11:14,206   Running command python setup.py bdist_wheel
2024-12-03T03:11:15,272   running bdist_wheel
2024-12-03T03:11:15,413   running build
2024-12-03T03:11:15,413   running build_py
2024-12-03T03:11:15,444   creating build/lib/UNAGI
2024-12-03T03:11:15,447   copying UNAGI/__init__.py -> build/lib/UNAGI
2024-12-03T03:11:15,449   copying UNAGI/UNAGI_tool.py -> build/lib/UNAGI
2024-12-03T03:11:15,451   copying UNAGI/UNAGI_analyst.py -> build/lib/UNAGI
2024-12-03T03:11:15,455   creating build/lib/UNAGI/marker_discovery
2024-12-03T03:11:15,456   copying UNAGI/marker_discovery/dynamic_markers_helper.py -> build/lib/UNAGI/marker_discovery
2024-12-03T03:11:15,458   copying UNAGI/marker_discovery/__init__.py -> build/lib/UNAGI/marker_discovery
2024-12-03T03:11:15,460   copying UNAGI/marker_discovery/hierachical_static_markers.py -> build/lib/UNAGI/marker_discovery
2024-12-03T03:11:15,462   copying UNAGI/marker_discovery/dynamic_markers.py -> build/lib/UNAGI/marker_discovery
2024-12-03T03:11:15,466   creating build/lib/UNAGI/utils
2024-12-03T03:11:15,467   copying UNAGI/utils/__init__.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,469   copying UNAGI/utils/attribute_utils.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,472   copying UNAGI/utils/h5adReader.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,474   copying UNAGI/utils/gcn_utils.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,476   copying UNAGI/utils/CPO_utils.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,478   copying UNAGI/utils/evaluate.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,480   copying UNAGI/utils/analysis_helper.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,483   copying UNAGI/utils/trainer_utils.py -> build/lib/UNAGI/utils
2024-12-03T03:11:15,486   creating build/lib/UNAGI/perturbations
2024-12-03T03:11:15,487   copying UNAGI/perturbations/__init__.py -> build/lib/UNAGI/perturbations
2024-12-03T03:11:15,489   copying UNAGI/perturbations/analysis_perturbation.py -> build/lib/UNAGI/perturbations
2024-12-03T03:11:15,492   copying UNAGI/perturbations/compounds.py -> build/lib/UNAGI/perturbations
2024-12-03T03:11:15,495   copying UNAGI/perturbations/pathways.py -> build/lib/UNAGI/perturbations
2024-12-03T03:11:15,497   copying UNAGI/perturbations/speedup_perturbation.py -> build/lib/UNAGI/perturbations
2024-12-03T03:11:15,500   creating build/lib/UNAGI/model
2024-12-03T03:11:15,502   copying UNAGI/model/__init__.py -> build/lib/UNAGI/model
2024-12-03T03:11:15,503   copying UNAGI/model/models.py -> build/lib/UNAGI/model
2024-12-03T03:11:15,506   copying UNAGI/model/distributions.py -> build/lib/UNAGI/model
2024-12-03T03:11:15,508   creating build/lib/UNAGI/plotting
2024-12-03T03:11:15,510   copying UNAGI/plotting/__init__.py -> build/lib/UNAGI/plotting
2024-12-03T03:11:15,511   copying UNAGI/plotting/plot_stage_dendrogram.py -> build/lib/UNAGI/plotting
2024-12-03T03:11:15,514   copying UNAGI/plotting/plot_cell_embeddings.py -> build/lib/UNAGI/plotting
2024-12-03T03:11:15,516   copying UNAGI/plotting/plot_hierarchical_markers_heatmap.py -> build/lib/UNAGI/plotting
2024-12-03T03:11:15,519   copying UNAGI/plotting/plot_cell_type_composition.py -> build/lib/UNAGI/plotting
2024-12-03T03:11:15,521   creating build/lib/UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:15,522   copying UNAGI/dynamic_regulatory_networks/__init__.py -> build/lib/UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:15,524   copying UNAGI/dynamic_regulatory_networks/processTFs.py -> build/lib/UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:15,527   copying UNAGI/dynamic_regulatory_networks/processIDREM.py -> build/lib/UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:15,530   creating build/lib/UNAGI/train
2024-12-03T03:11:15,531   copying UNAGI/train/__init__.py -> build/lib/UNAGI/train
2024-12-03T03:11:15,533   copying UNAGI/train/trainer.py -> build/lib/UNAGI/train
2024-12-03T03:11:15,536   copying UNAGI/train/runner.py -> build/lib/UNAGI/train
2024-12-03T03:11:15,538   copying UNAGI/train/customized_elbo.py -> build/lib/UNAGI/train
2024-12-03T03:11:15,541   creating build/lib/UNAGI/dynamic_graphs
2024-12-03T03:11:15,542   copying UNAGI/dynamic_graphs/__init__.py -> build/lib/UNAGI/dynamic_graphs
2024-12-03T03:11:15,544   copying UNAGI/dynamic_graphs/distDistance.py -> build/lib/UNAGI/dynamic_graphs
2024-12-03T03:11:15,546   copying UNAGI/dynamic_graphs/buildGraph.py -> build/lib/UNAGI/dynamic_graphs
2024-12-03T03:11:15,548   running egg_info
2024-12-03T03:11:15,578   writing scUNAGI.egg-info/PKG-INFO
2024-12-03T03:11:15,583   writing dependency_links to scUNAGI.egg-info/dependency_links.txt
2024-12-03T03:11:15,585   writing requirements to scUNAGI.egg-info/requires.txt
2024-12-03T03:11:15,587   writing top-level names to scUNAGI.egg-info/top_level.txt
2024-12-03T03:11:15,625   reading manifest file 'scUNAGI.egg-info/SOURCES.txt'
2024-12-03T03:11:15,629   reading manifest template 'MANIFEST.in'
2024-12-03T03:11:15,630   warning: no files found matching 'LICENSE'
2024-12-03T03:11:15,631   adding license file 'LICENSE.txt'
2024-12-03T03:11:15,635   writing manifest file 'scUNAGI.egg-info/SOURCES.txt'
2024-12-03T03:11:15,637   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'UNAGI.data' is absent from the `packages` configuration.
2024-12-03T03:11:15,638   !!

2024-12-03T03:11:15,639           ********************************************************************************
2024-12-03T03:11:15,640           ############################
2024-12-03T03:11:15,641           # Package would be ignored #
2024-12-03T03:11:15,642           ############################
2024-12-03T03:11:15,642           Python recognizes 'UNAGI.data' as an importable package[^1],
2024-12-03T03:11:15,643           but it is absent from setuptools' `packages` configuration.

2024-12-03T03:11:15,644           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-03T03:11:15,645           package, please make sure that 'UNAGI.data' is explicitly added
2024-12-03T03:11:15,645           to the `packages` configuration field.

2024-12-03T03:11:15,647           Alternatively, you can also rely on setuptools' discovery methods
2024-12-03T03:11:15,647           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-03T03:11:15,648           instead of `find_packages(...)`/`find:`).

2024-12-03T03:11:15,650           You can read more about "package discovery" on setuptools documentation page:

2024-12-03T03:11:15,651           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-03T03:11:15,652           If you don't want 'UNAGI.data' to be distributed and are
2024-12-03T03:11:15,653           already explicitly excluding 'UNAGI.data' via
2024-12-03T03:11:15,654           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-03T03:11:15,654           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-03T03:11:15,655           combination with a more fine grained `package-data` configuration.

2024-12-03T03:11:15,656           You can read more about "package data files" on setuptools documentation page:

2024-12-03T03:11:15,667           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-03T03:11:15,689           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-03T03:11:15,690                 even if it does not contain any `.py` files.
2024-12-03T03:11:15,691                 On the other hand, currently there is no concept of package data
2024-12-03T03:11:15,692                 directory, all directories are treated like packages.
2024-12-03T03:11:15,692           ********************************************************************************

2024-12-03T03:11:15,694   !!
2024-12-03T03:11:15,694     check.warn(importable)
2024-12-03T03:11:15,695   creating build/lib/UNAGI/data
2024-12-03T03:11:15,696   copying UNAGI/data/brdID2cmapName.npy -> build/lib/UNAGI/data
2024-12-03T03:11:15,696   copying UNAGI/data/gesa_pathways.npy -> build/lib/UNAGI/data
2024-12-03T03:11:15,772   copying UNAGI/data/human_encode.txt -> build/lib/UNAGI/data
2024-12-03T03:11:16,188   copying UNAGI/data/jasper_target_pair.npy -> build/lib/UNAGI/data
2024-12-03T03:11:16,207   copying UNAGI/data/mouse_predicted.txt -> build/lib/UNAGI/data
2024-12-03T03:11:16,462   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-03T03:11:16,463   !!

2024-12-03T03:11:16,464           ********************************************************************************
2024-12-03T03:11:16,465           Please avoid running ``setup.py`` directly.
2024-12-03T03:11:16,466           Instead, use pypa/build, pypa/installer or other
2024-12-03T03:11:16,466           standards-based tools.

2024-12-03T03:11:16,468           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-03T03:11:16,468           ********************************************************************************

2024-12-03T03:11:16,469   !!
2024-12-03T03:11:16,470     self.initialize_options()
2024-12-03T03:11:16,494   installing to build/bdist.linux-armv7l/wheel
2024-12-03T03:11:16,495   running install
2024-12-03T03:11:16,520   running install_lib
2024-12-03T03:11:16,547   creating build/bdist.linux-armv7l/wheel
2024-12-03T03:11:16,550   creating build/bdist.linux-armv7l/wheel/UNAGI
2024-12-03T03:11:16,552   creating build/bdist.linux-armv7l/wheel/UNAGI/marker_discovery
2024-12-03T03:11:16,554   copying build/lib/UNAGI/marker_discovery/dynamic_markers_helper.py -> build/bdist.linux-armv7l/wheel/./UNAGI/marker_discovery
2024-12-03T03:11:16,557   copying build/lib/UNAGI/marker_discovery/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/marker_discovery
2024-12-03T03:11:16,558   copying build/lib/UNAGI/marker_discovery/hierachical_static_markers.py -> build/bdist.linux-armv7l/wheel/./UNAGI/marker_discovery
2024-12-03T03:11:16,561   copying build/lib/UNAGI/marker_discovery/dynamic_markers.py -> build/bdist.linux-armv7l/wheel/./UNAGI/marker_discovery
2024-12-03T03:11:16,565   creating build/bdist.linux-armv7l/wheel/UNAGI/utils
2024-12-03T03:11:16,566   copying build/lib/UNAGI/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,568   copying build/lib/UNAGI/utils/attribute_utils.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,571   copying build/lib/UNAGI/utils/h5adReader.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,574   copying build/lib/UNAGI/utils/gcn_utils.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,576   copying build/lib/UNAGI/utils/CPO_utils.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,578   copying build/lib/UNAGI/utils/evaluate.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,581   copying build/lib/UNAGI/utils/analysis_helper.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,584   copying build/lib/UNAGI/utils/trainer_utils.py -> build/bdist.linux-armv7l/wheel/./UNAGI/utils
2024-12-03T03:11:16,586   creating build/bdist.linux-armv7l/wheel/UNAGI/perturbations
2024-12-03T03:11:16,588   copying build/lib/UNAGI/perturbations/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/perturbations
2024-12-03T03:11:16,590   copying build/lib/UNAGI/perturbations/analysis_perturbation.py -> build/bdist.linux-armv7l/wheel/./UNAGI/perturbations
2024-12-03T03:11:16,594   copying build/lib/UNAGI/perturbations/compounds.py -> build/bdist.linux-armv7l/wheel/./UNAGI/perturbations
2024-12-03T03:11:16,596   copying build/lib/UNAGI/perturbations/pathways.py -> build/bdist.linux-armv7l/wheel/./UNAGI/perturbations
2024-12-03T03:11:16,598   copying build/lib/UNAGI/perturbations/speedup_perturbation.py -> build/bdist.linux-armv7l/wheel/./UNAGI/perturbations
2024-12-03T03:11:16,602   copying build/lib/UNAGI/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI
2024-12-03T03:11:16,604   copying build/lib/UNAGI/UNAGI_tool.py -> build/bdist.linux-armv7l/wheel/./UNAGI
2024-12-03T03:11:16,607   creating build/bdist.linux-armv7l/wheel/UNAGI/model
2024-12-03T03:11:16,609   copying build/lib/UNAGI/model/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/model
2024-12-03T03:11:16,611   copying build/lib/UNAGI/model/models.py -> build/bdist.linux-armv7l/wheel/./UNAGI/model
2024-12-03T03:11:16,614   copying build/lib/UNAGI/model/distributions.py -> build/bdist.linux-armv7l/wheel/./UNAGI/model
2024-12-03T03:11:16,617   creating build/bdist.linux-armv7l/wheel/UNAGI/plotting
2024-12-03T03:11:16,619   copying build/lib/UNAGI/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/plotting
2024-12-03T03:11:16,621   copying build/lib/UNAGI/plotting/plot_stage_dendrogram.py -> build/bdist.linux-armv7l/wheel/./UNAGI/plotting
2024-12-03T03:11:16,624   copying build/lib/UNAGI/plotting/plot_cell_embeddings.py -> build/bdist.linux-armv7l/wheel/./UNAGI/plotting
2024-12-03T03:11:16,627   copying build/lib/UNAGI/plotting/plot_hierarchical_markers_heatmap.py -> build/bdist.linux-armv7l/wheel/./UNAGI/plotting
2024-12-03T03:11:16,629   copying build/lib/UNAGI/plotting/plot_cell_type_composition.py -> build/bdist.linux-armv7l/wheel/./UNAGI/plotting
2024-12-03T03:11:16,632   creating build/bdist.linux-armv7l/wheel/UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:16,634   copying build/lib/UNAGI/dynamic_regulatory_networks/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:16,636   copying build/lib/UNAGI/dynamic_regulatory_networks/processTFs.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:16,639   copying build/lib/UNAGI/dynamic_regulatory_networks/processIDREM.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_regulatory_networks
2024-12-03T03:11:16,642   creating build/bdist.linux-armv7l/wheel/UNAGI/train
2024-12-03T03:11:16,644   copying build/lib/UNAGI/train/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/train
2024-12-03T03:11:16,646   copying build/lib/UNAGI/train/trainer.py -> build/bdist.linux-armv7l/wheel/./UNAGI/train
2024-12-03T03:11:16,649   copying build/lib/UNAGI/train/runner.py -> build/bdist.linux-armv7l/wheel/./UNAGI/train
2024-12-03T03:11:16,652   copying build/lib/UNAGI/train/customized_elbo.py -> build/bdist.linux-armv7l/wheel/./UNAGI/train
2024-12-03T03:11:16,655   creating build/bdist.linux-armv7l/wheel/UNAGI/data
2024-12-03T03:11:16,657   copying build/lib/UNAGI/data/human_encode.txt -> build/bdist.linux-armv7l/wheel/./UNAGI/data
2024-12-03T03:11:17,067   copying build/lib/UNAGI/data/brdID2cmapName.npy -> build/bdist.linux-armv7l/wheel/./UNAGI/data
2024-12-03T03:11:17,093   copying build/lib/UNAGI/data/mouse_predicted.txt -> build/bdist.linux-armv7l/wheel/./UNAGI/data
2024-12-03T03:11:17,315   copying build/lib/UNAGI/data/jasper_target_pair.npy -> build/bdist.linux-armv7l/wheel/./UNAGI/data
2024-12-03T03:11:17,333   copying build/lib/UNAGI/data/gesa_pathways.npy -> build/bdist.linux-armv7l/wheel/./UNAGI/data
2024-12-03T03:11:17,372   creating build/bdist.linux-armv7l/wheel/UNAGI/dynamic_graphs
2024-12-03T03:11:17,374   copying build/lib/UNAGI/dynamic_graphs/__init__.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_graphs
2024-12-03T03:11:17,376   copying build/lib/UNAGI/dynamic_graphs/distDistance.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_graphs
2024-12-03T03:11:17,378   copying build/lib/UNAGI/dynamic_graphs/buildGraph.py -> build/bdist.linux-armv7l/wheel/./UNAGI/dynamic_graphs
2024-12-03T03:11:17,382   copying build/lib/UNAGI/UNAGI_analyst.py -> build/bdist.linux-armv7l/wheel/./UNAGI
2024-12-03T03:11:17,384   running install_egg_info
2024-12-03T03:11:17,422   Copying scUNAGI.egg-info to build/bdist.linux-armv7l/wheel/./scUNAGI-0.5.0-py3.11.egg-info
2024-12-03T03:11:17,438   running install_scripts
2024-12-03T03:11:17,469   creating build/bdist.linux-armv7l/wheel/scUNAGI-0.5.0.dist-info/WHEEL
2024-12-03T03:11:17,472   creating '/tmp/pip-wheel-42vezdej/scUNAGI-0.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-03T03:11:17,476   adding 'UNAGI/UNAGI_analyst.py'
2024-12-03T03:11:17,479   adding 'UNAGI/UNAGI_tool.py'
2024-12-03T03:11:17,481   adding 'UNAGI/__init__.py'
2024-12-03T03:11:17,629   adding 'UNAGI/data/brdID2cmapName.npy'
2024-12-03T03:11:17,992   adding 'UNAGI/data/gesa_pathways.npy'
2024-12-03T03:11:20,100   adding 'UNAGI/data/human_encode.txt'
2024-12-03T03:11:20,437   adding 'UNAGI/data/jasper_target_pair.npy'
2024-12-03T03:11:21,262   adding 'UNAGI/data/mouse_predicted.txt'
2024-12-03T03:11:21,358   adding 'UNAGI/dynamic_graphs/__init__.py'
2024-12-03T03:11:21,360   adding 'UNAGI/dynamic_graphs/buildGraph.py'
2024-12-03T03:11:21,362   adding 'UNAGI/dynamic_graphs/distDistance.py'
2024-12-03T03:11:21,364   adding 'UNAGI/dynamic_regulatory_networks/__init__.py'
2024-12-03T03:11:21,366   adding 'UNAGI/dynamic_regulatory_networks/processIDREM.py'
2024-12-03T03:11:21,369   adding 'UNAGI/dynamic_regulatory_networks/processTFs.py'
2024-12-03T03:11:21,371   adding 'UNAGI/marker_discovery/__init__.py'
2024-12-03T03:11:21,373   adding 'UNAGI/marker_discovery/dynamic_markers.py'
2024-12-03T03:11:21,375   adding 'UNAGI/marker_discovery/dynamic_markers_helper.py'
2024-12-03T03:11:21,378   adding 'UNAGI/marker_discovery/hierachical_static_markers.py'
2024-12-03T03:11:21,380   adding 'UNAGI/model/__init__.py'
2024-12-03T03:11:21,382   adding 'UNAGI/model/distributions.py'
2024-12-03T03:11:21,384   adding 'UNAGI/model/models.py'
2024-12-03T03:11:21,386   adding 'UNAGI/perturbations/__init__.py'
2024-12-03T03:11:21,391   adding 'UNAGI/perturbations/analysis_perturbation.py'
2024-12-03T03:11:21,393   adding 'UNAGI/perturbations/compounds.py'
2024-12-03T03:11:21,394   adding 'UNAGI/perturbations/pathways.py'
2024-12-03T03:11:21,399   adding 'UNAGI/perturbations/speedup_perturbation.py'
2024-12-03T03:11:21,401   adding 'UNAGI/plotting/__init__.py'
2024-12-03T03:11:21,403   adding 'UNAGI/plotting/plot_cell_embeddings.py'
2024-12-03T03:11:21,404   adding 'UNAGI/plotting/plot_cell_type_composition.py'
2024-12-03T03:11:21,406   adding 'UNAGI/plotting/plot_hierarchical_markers_heatmap.py'
2024-12-03T03:11:21,407   adding 'UNAGI/plotting/plot_stage_dendrogram.py'
2024-12-03T03:11:21,409   adding 'UNAGI/train/__init__.py'
2024-12-03T03:11:21,411   adding 'UNAGI/train/customized_elbo.py'
2024-12-03T03:11:21,413   adding 'UNAGI/train/runner.py'
2024-12-03T03:11:21,415   adding 'UNAGI/train/trainer.py'
2024-12-03T03:11:21,417   adding 'UNAGI/utils/CPO_utils.py'
2024-12-03T03:11:21,418   adding 'UNAGI/utils/__init__.py'
2024-12-03T03:11:21,420   adding 'UNAGI/utils/analysis_helper.py'
2024-12-03T03:11:21,422   adding 'UNAGI/utils/attribute_utils.py'
2024-12-03T03:11:21,423   adding 'UNAGI/utils/evaluate.py'
2024-12-03T03:11:21,424   adding 'UNAGI/utils/gcn_utils.py'
2024-12-03T03:11:21,426   adding 'UNAGI/utils/h5adReader.py'
2024-12-03T03:11:21,427   adding 'UNAGI/utils/trainer_utils.py'
2024-12-03T03:11:21,433   adding 'scUNAGI-0.5.0.dist-info/LICENSE.txt'
2024-12-03T03:11:21,434   adding 'scUNAGI-0.5.0.dist-info/METADATA'
2024-12-03T03:11:21,435   adding 'scUNAGI-0.5.0.dist-info/WHEEL'
2024-12-03T03:11:21,436   adding 'scUNAGI-0.5.0.dist-info/top_level.txt'
2024-12-03T03:11:21,437   adding 'scUNAGI-0.5.0.dist-info/RECORD'
2024-12-03T03:11:21,519   removing build/bdist.linux-armv7l/wheel
2024-12-03T03:11:21,665   Building wheel for scunagi (setup.py): finished with status 'done'
2024-12-03T03:11:21,737   Created wheel for scunagi: filename=scUNAGI-0.5.0-py3-none-any.whl size=7077027 sha256=8a53da8cb5920cb8e95b06e4e6a95713133b4afdc97813dcaa42784062eef303
2024-12-03T03:11:21,738   Stored in directory: /tmp/pip-ephem-wheel-cache-uaxd4km9/wheels/48/89/24/95ce187acb0306bd376465f70fa1b5d3d7ce4c2147cec2ea27
2024-12-03T03:11:21,758 Successfully built scunagi
2024-12-03T03:11:21,945 Removed build tracker: '/tmp/pip-build-tracker-e1ft0nfl'