2024-12-03T09:40:34,089 Created temporary directory: /tmp/pip-build-tracker-r_ne6wjh 2024-12-03T09:40:34,091 Initialized build tracking at /tmp/pip-build-tracker-r_ne6wjh 2024-12-03T09:40:34,091 Created build tracker: /tmp/pip-build-tracker-r_ne6wjh 2024-12-03T09:40:34,092 Entered build tracker: /tmp/pip-build-tracker-r_ne6wjh 2024-12-03T09:40:34,093 Created temporary directory: /tmp/pip-wheel-9mpowobh 2024-12-03T09:40:34,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sc1jucw 2024-12-03T09:40:34,141 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-03T09:40:34,143 2 location(s) to search for versions of scipion-em-tomo3d: 2024-12-03T09:40:34,143 * https://pypi.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,143 * https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,144 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,145 Getting page https://pypi.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,147 Found index url https://pypi.org/simple/ 2024-12-03T09:40:34,365 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json 2024-12-03T09:40:34,369 Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0 2024-12-03T09:40:34,370 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,370 Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1 2024-12-03T09:40:34,371 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,372 Found link https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.2 2024-12-03T09:40:34,373 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/bb/d4/ec3e1c200ae6c204eca1fc45f208fb5d39bcfe64767475c5c33deb595424/scipion_em_tomo3d-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,373 Found link https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.3 2024-12-03T09:40:34,374 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/a1/2d/498a056cfcef0ec4b0c77e469a946d6b622d92e3b50bc21d799d5dc173b7/scipion_em_tomo3d-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,375 Found link https://files.pythonhosted.org/packages/a0/c8/608d0803be9f03aa5046683e42a3ff77c37441a98fc37cc53b7a8a95c11a/scipion-em-tomo3d-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.4 2024-12-03T09:40:34,375 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/27/6f/7944b907374c4e7bc37c9e1310f6e29ff25dbec87d5b25b17ca736dc84bb/scipion_em_tomo3d-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,376 Found link https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.2.0 2024-12-03T09:40:34,377 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/6f/d6/4c0d3ff077f11c64c7a24a934201e43dc4fb358d013292e5d130a06383b0/scipion_em_tomo3d-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-12-03T09:40:34,377 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,378 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,380 Found index url https://www.piwheels.org/simple/ 2024-12-03T09:40:34,546 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html 2024-12-03T09:40:34,547 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,547 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/ 2024-12-03T09:40:34,567 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates 2024-12-03T09:40:34,569 Collecting scipion-em-tomo3d==3.2.0 2024-12-03T09:40:34,571 Created temporary directory: /tmp/pip-unpack-tsyh6n5c 2024-12-03T09:40:34,712 Downloading scipion-em-tomo3d-3.2.0.tar.gz (32 kB) 2024-12-03T09:40:34,791 Added scipion-em-tomo3d==3.2.0 from https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-r_ne6wjh' 2024-12-03T09:40:34,793 Running setup.py (path:/tmp/pip-wheel-9mpowobh/scipion-em-tomo3d_16651f3f232f4b4da57e84e20e794448/setup.py) egg_info for package scipion-em-tomo3d 2024-12-03T09:40:34,794 Created temporary directory: /tmp/pip-pip-egg-info-2k55_qxm 2024-12-03T09:40:34,794 Preparing metadata (setup.py): started 2024-12-03T09:40:34,796 Running command python setup.py egg_info 2024-12-03T09:40:35,272 Traceback (most recent call last): 2024-12-03T09:40:35,273 File "", line 2, in 2024-12-03T09:40:35,273 File "", line 34, in 2024-12-03T09:40:35,274 File "/tmp/pip-wheel-9mpowobh/scipion-em-tomo3d_16651f3f232f4b4da57e84e20e794448/setup.py", line 13, in 2024-12-03T09:40:35,275 from tomo3d import __version__ 2024-12-03T09:40:35,276 File "/tmp/pip-wheel-9mpowobh/scipion-em-tomo3d_16651f3f232f4b4da57e84e20e794448/tomo3d/__init__.py", line 31, in 2024-12-03T09:40:35,277 import pwem 2024-12-03T09:40:35,278 ModuleNotFoundError: No module named 'pwem' 2024-12-03T09:40:35,339 ERROR: python setup.py egg_info exited with 1 2024-12-03T09:40:35,352 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2024-12-03T09:40:35,352 exec(compile('"'"''"'"''"'"' 2024-12-03T09:40:35,352 # This is -- a caller that pip uses to run setup.py 2024-12-03T09:40:35,352 # 2024-12-03T09:40:35,352 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-12-03T09:40:35,352 # import from `distutils.core` to work with newer packaging standards. 2024-12-03T09:40:35,352 # - It provides a clear error message when setuptools is not installed. 2024-12-03T09:40:35,352 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-12-03T09:40:35,352 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-12-03T09:40:35,352 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-12-03T09:40:35,352 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-12-03T09:40:35,352 import os, sys, tokenize 2024-12-03T09:40:35,352 2024-12-03T09:40:35,352 try: 2024-12-03T09:40:35,352 import setuptools 2024-12-03T09:40:35,352 except ImportError as error: 2024-12-03T09:40:35,352 print( 2024-12-03T09:40:35,352 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-12-03T09:40:35,352 "the build environment.", 2024-12-03T09:40:35,352 file=sys.stderr, 2024-12-03T09:40:35,352 ) 2024-12-03T09:40:35,352 sys.exit(1) 2024-12-03T09:40:35,352 2024-12-03T09:40:35,352 __file__ = %r 2024-12-03T09:40:35,352 sys.argv[0] = __file__ 2024-12-03T09:40:35,352 2024-12-03T09:40:35,352 if os.path.exists(__file__): 2024-12-03T09:40:35,352 filename = __file__ 2024-12-03T09:40:35,352 with tokenize.open(__file__) as f: 2024-12-03T09:40:35,352 setup_py_code = f.read() 2024-12-03T09:40:35,352 else: 2024-12-03T09:40:35,352 filename = "" 2024-12-03T09:40:35,352 setup_py_code = "from setuptools import setup; setup()" 2024-12-03T09:40:35,352 2024-12-03T09:40:35,352 exec(compile(setup_py_code, filename, "exec")) 2024-12-03T09:40:35,352 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-9mpowobh/scipion-em-tomo3d_16651f3f232f4b4da57e84e20e794448/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-2k55_qxm[/] 2024-12-03T09:40:35,353 [bold magenta]cwd[/]: /tmp/pip-wheel-9mpowobh/scipion-em-tomo3d_16651f3f232f4b4da57e84e20e794448/ 2024-12-03T09:40:35,354 Preparing metadata (setup.py): finished with status 'error' 2024-12-03T09:40:35,355 ERROR: metadata generation failed 2024-12-03T09:40:35,361 Exception information: 2024-12-03T09:40:35,361 Traceback (most recent call last): 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2024-12-03T09:40:35,361 call_subprocess( 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2024-12-03T09:40:35,361 raise error 2024-12-03T09:40:35,361 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2024-12-03T09:40:35,361 2024-12-03T09:40:35,361 The above exception was the direct cause of the following exception: 2024-12-03T09:40:35,361 2024-12-03T09:40:35,361 Traceback (most recent call last): 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2024-12-03T09:40:35,361 status = _inner_run() 2024-12-03T09:40:35,361 ^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2024-12-03T09:40:35,361 return self.run(options, args) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper 2024-12-03T09:40:35,361 return func(self, options, args) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2024-12-03T09:40:35,361 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve 2024-12-03T09:40:35,361 result = self._result = resolver.resolve( 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2024-12-03T09:40:35,361 state = resolution.resolve(requirements, max_rounds=max_rounds) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2024-12-03T09:40:35,361 self._add_to_criteria(self.state.criteria, r, parent=None) 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2024-12-03T09:40:35,361 if not criterion.candidates: 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2024-12-03T09:40:35,361 return bool(self._sequence) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__ 2024-12-03T09:40:35,361 return any(self) 2024-12-03T09:40:35,361 ^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in 2024-12-03T09:40:35,361 return (c for c in iterator if id(c) not in self._incompatible_ids) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built 2024-12-03T09:40:35,361 candidate = func() 2024-12-03T09:40:35,361 ^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2024-12-03T09:40:35,361 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2024-12-03T09:40:35,361 self._link_candidate_cache[link] = LinkCandidate( 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in __init__ 2024-12-03T09:40:35,361 super().__init__( 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2024-12-03T09:40:35,361 self.dist = self._prepare() 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2024-12-03T09:40:35,361 dist = self._prepare_distribution() 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 315, in _prepare_distribution 2024-12-03T09:40:35,361 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement 2024-12-03T09:40:35,361 return self._prepare_linked_requirement(req, parallel_builds) 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement 2024-12-03T09:40:35,361 dist = _get_prepared_distribution( 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution 2024-12-03T09:40:35,361 abstract_dist.prepare_distribution_metadata( 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2024-12-03T09:40:35,361 self.req.prepare_metadata() 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2024-12-03T09:40:35,361 self.metadata_directory = generate_metadata_legacy( 2024-12-03T09:40:35,361 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-12-03T09:40:35,361 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2024-12-03T09:40:35,361 raise MetadataGenerationFailed(package_details=details) from error 2024-12-03T09:40:35,361 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2024-12-03T09:40:35,374 Removed scipion-em-tomo3d==3.2.0 from https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-r_ne6wjh' 2024-12-03T09:40:35,375 Removed build tracker: '/tmp/pip-build-tracker-r_ne6wjh'