2024-12-03T10:43:00,625 Disabling truststore because Python version isn't 3.10+
2024-12-03T10:43:01,158 Created temporary directory: /tmp/pip-build-tracker-_bn8lvf_
2024-12-03T10:43:01,158 Initialized build tracking at /tmp/pip-build-tracker-_bn8lvf_
2024-12-03T10:43:01,159 Created build tracker: /tmp/pip-build-tracker-_bn8lvf_
2024-12-03T10:43:01,159 Entered build tracker: /tmp/pip-build-tracker-_bn8lvf_
2024-12-03T10:43:01,159 Created temporary directory: /tmp/pip-wheel-gt5igx27
2024-12-03T10:43:01,165 Created temporary directory: /tmp/pip-ephem-wheel-cache-t3vrhsvo
2024-12-03T10:43:01,212 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-03T10:43:01,215 2 location(s) to search for versions of scipion-em-tomo3d:
2024-12-03T10:43:01,215 * https://pypi.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,215 * https://www.piwheels.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,218 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,218 Getting page https://pypi.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,220 Found index url https://pypi.org/simple/
2024-12-03T10:43:01,315 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json
2024-12-03T10:43:01,318   Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0
2024-12-03T10:43:01,318   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,319   Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1
2024-12-03T10:43:01,319   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,319   Found link https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.2
2024-12-03T10:43:01,319   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/bb/d4/ec3e1c200ae6c204eca1fc45f208fb5d39bcfe64767475c5c33deb595424/scipion_em_tomo3d-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,320   Found link https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.3
2024-12-03T10:43:01,320   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/a1/2d/498a056cfcef0ec4b0c77e469a946d6b622d92e3b50bc21d799d5dc173b7/scipion_em_tomo3d-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,320   Found link https://files.pythonhosted.org/packages/a0/c8/608d0803be9f03aa5046683e42a3ff77c37441a98fc37cc53b7a8a95c11a/scipion-em-tomo3d-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.4
2024-12-03T10:43:01,320   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/27/6f/7944b907374c4e7bc37c9e1310f6e29ff25dbec87d5b25b17ca736dc84bb/scipion_em_tomo3d-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,320   Found link https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.2.0
2024-12-03T10:43:01,321   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/6f/d6/4c0d3ff077f11c64c7a24a934201e43dc4fb358d013292e5d130a06383b0/scipion_em_tomo3d-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2024-12-03T10:43:01,321 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,321 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,322 Found index url https://www.piwheels.org/simple/
2024-12-03T10:43:01,377 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html
2024-12-03T10:43:01,378 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,378 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/
2024-12-03T10:43:01,395 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates
2024-12-03T10:43:01,396 Collecting scipion-em-tomo3d==3.2.0
2024-12-03T10:43:01,398   Created temporary directory: /tmp/pip-unpack-0ryudqnb
2024-12-03T10:43:01,649   Downloading scipion-em-tomo3d-3.2.0.tar.gz (32 kB)
2024-12-03T10:43:01,734   Added scipion-em-tomo3d==3.2.0 from https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-_bn8lvf_'
2024-12-03T10:43:01,736   Running setup.py (path:/tmp/pip-wheel-gt5igx27/scipion-em-tomo3d_eb9a4ae8b1ee4001a0b320437968c8d7/setup.py) egg_info for package scipion-em-tomo3d
2024-12-03T10:43:01,737   Created temporary directory: /tmp/pip-pip-egg-info-dc1jpt4i
2024-12-03T10:43:01,738   Preparing metadata (setup.py): started
2024-12-03T10:43:01,739   Running command python setup.py egg_info
2024-12-03T10:43:02,489   Traceback (most recent call last):
2024-12-03T10:43:02,489     File "<string>", line 2, in <module>
2024-12-03T10:43:02,489     File "<pip-setuptools-caller>", line 34, in <module>
2024-12-03T10:43:02,490     File "/tmp/pip-wheel-gt5igx27/scipion-em-tomo3d_eb9a4ae8b1ee4001a0b320437968c8d7/setup.py", line 13, in <module>
2024-12-03T10:43:02,490       from tomo3d import __version__
2024-12-03T10:43:02,490     File "/tmp/pip-wheel-gt5igx27/scipion-em-tomo3d_eb9a4ae8b1ee4001a0b320437968c8d7/tomo3d/__init__.py", line 31, in <module>
2024-12-03T10:43:02,490       import pwem
2024-12-03T10:43:02,490   ModuleNotFoundError: No module named 'pwem'
2024-12-03T10:43:02,540   ERROR: python setup.py egg_info exited with 1
2024-12-03T10:43:02,557   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2024-12-03T10:43:02,557   exec(compile('"'"''"'"''"'"'
2024-12-03T10:43:02,557   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2024-12-03T10:43:02,557   #
2024-12-03T10:43:02,557   # - It imports setuptools before invoking setup.py, to enable projects that directly
2024-12-03T10:43:02,557   #   import from `distutils.core` to work with newer packaging standards.
2024-12-03T10:43:02,557   # - It provides a clear error message when setuptools is not installed.
2024-12-03T10:43:02,557   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2024-12-03T10:43:02,557   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2024-12-03T10:43:02,557   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2024-12-03T10:43:02,557   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2024-12-03T10:43:02,557   import os, sys, tokenize
2024-12-03T10:43:02,557   
2024-12-03T10:43:02,557   try:
2024-12-03T10:43:02,557       import setuptools
2024-12-03T10:43:02,557   except ImportError as error:
2024-12-03T10:43:02,557       print(
2024-12-03T10:43:02,557           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2024-12-03T10:43:02,557           "the build environment.",
2024-12-03T10:43:02,557           file=sys.stderr,
2024-12-03T10:43:02,557       )
2024-12-03T10:43:02,557       sys.exit(1)
2024-12-03T10:43:02,557   
2024-12-03T10:43:02,557   __file__ = %r
2024-12-03T10:43:02,557   sys.argv[0] = __file__
2024-12-03T10:43:02,557   
2024-12-03T10:43:02,557   if os.path.exists(__file__):
2024-12-03T10:43:02,557       filename = __file__
2024-12-03T10:43:02,557       with tokenize.open(__file__) as f:
2024-12-03T10:43:02,557           setup_py_code = f.read()
2024-12-03T10:43:02,557   else:
2024-12-03T10:43:02,557       filename = "<auto-generated setuptools caller>"
2024-12-03T10:43:02,557       setup_py_code = "from setuptools import setup; setup()"
2024-12-03T10:43:02,557   
2024-12-03T10:43:02,557   exec(compile(setup_py_code, filename, "exec"))
2024-12-03T10:43:02,557   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-gt5igx27/scipion-em-tomo3d_eb9a4ae8b1ee4001a0b320437968c8d7/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-dc1jpt4i[/]
2024-12-03T10:43:02,558   [bold magenta]cwd[/]: /tmp/pip-wheel-gt5igx27/scipion-em-tomo3d_eb9a4ae8b1ee4001a0b320437968c8d7/
2024-12-03T10:43:02,558   Preparing metadata (setup.py): finished with status 'error'
2024-12-03T10:43:02,559 ERROR: metadata generation failed
2024-12-03T10:43:02,565 Exception information:
2024-12-03T10:43:02,565 Traceback (most recent call last):
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2024-12-03T10:43:02,565     call_subprocess(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess
2024-12-03T10:43:02,565     raise error
2024-12-03T10:43:02,565 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2024-12-03T10:43:02,565 
2024-12-03T10:43:02,565 The above exception was the direct cause of the following exception:
2024-12-03T10:43:02,565 
2024-12-03T10:43:02,565 Traceback (most recent call last):
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2024-12-03T10:43:02,565     status = _inner_run()
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2024-12-03T10:43:02,565     return self.run(options, args)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper
2024-12-03T10:43:02,565     return func(self, options, args)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2024-12-03T10:43:02,565     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve
2024-12-03T10:43:02,565     result = self._result = resolver.resolve(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2024-12-03T10:43:02,565     state = resolution.resolve(requirements, max_rounds=max_rounds)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2024-12-03T10:43:02,565     self._add_to_criteria(self.state.criteria, r, parent=None)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2024-12-03T10:43:02,565     if not criterion.candidates:
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2024-12-03T10:43:02,565     return bool(self._sequence)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__
2024-12-03T10:43:02,565     return any(self)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in <genexpr>
2024-12-03T10:43:02,565     return (c for c in iterator if id(c) not in self._incompatible_ids)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built
2024-12-03T10:43:02,565     candidate = func()
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
2024-12-03T10:43:02,565     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
2024-12-03T10:43:02,565     self._link_candidate_cache[link] = LinkCandidate(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in __init__
2024-12-03T10:43:02,565     super().__init__(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
2024-12-03T10:43:02,565     self.dist = self._prepare()
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
2024-12-03T10:43:02,565     dist = self._prepare_distribution()
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 315, in _prepare_distribution
2024-12-03T10:43:02,565     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement
2024-12-03T10:43:02,565     return self._prepare_linked_requirement(req, parallel_builds)
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement
2024-12-03T10:43:02,565     dist = _get_prepared_distribution(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution
2024-12-03T10:43:02,565     abstract_dist.prepare_distribution_metadata(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata
2024-12-03T10:43:02,565     self.req.prepare_metadata()
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata
2024-12-03T10:43:02,565     self.metadata_directory = generate_metadata_legacy(
2024-12-03T10:43:02,565   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2024-12-03T10:43:02,565     raise MetadataGenerationFailed(package_details=details) from error
2024-12-03T10:43:02,565 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2024-12-03T10:43:02,575 Removed scipion-em-tomo3d==3.2.0 from https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-_bn8lvf_'
2024-12-03T10:43:02,575 Removed build tracker: '/tmp/pip-build-tracker-_bn8lvf_'