2024-12-04T07:16:04,384 Created temporary directory: /tmp/pip-build-tracker-mpzvfwtp 2024-12-04T07:16:04,386 Initialized build tracking at /tmp/pip-build-tracker-mpzvfwtp 2024-12-04T07:16:04,386 Created build tracker: /tmp/pip-build-tracker-mpzvfwtp 2024-12-04T07:16:04,387 Entered build tracker: /tmp/pip-build-tracker-mpzvfwtp 2024-12-04T07:16:04,387 Created temporary directory: /tmp/pip-wheel-8so48v0h 2024-12-04T07:16:04,392 Created temporary directory: /tmp/pip-ephem-wheel-cache-wwu89ezf 2024-12-04T07:16:04,436 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-04T07:16:04,439 2 location(s) to search for versions of agentp: 2024-12-04T07:16:04,439 * https://pypi.org/simple/agentp/ 2024-12-04T07:16:04,439 * https://www.piwheels.org/simple/agentp/ 2024-12-04T07:16:04,439 Fetching project page and analyzing links: https://pypi.org/simple/agentp/ 2024-12-04T07:16:04,440 Getting page https://pypi.org/simple/agentp/ 2024-12-04T07:16:04,442 Found index url https://pypi.org/simple/ 2024-12-04T07:16:04,661 Fetched page https://pypi.org/simple/agentp/ as application/vnd.pypi.simple.v1+json 2024-12-04T07:16:04,665 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/63/c7/c420da77ffbf6f1685bfb920c36fe5c23bc1a21be69562359eb282a692af/agentp-0.0.0-py3-none-any.whl (from https://pypi.org/simple/agentp/) 2024-12-04T07:16:04,665 Found link https://files.pythonhosted.org/packages/ef/c3/39d7d9399603a27f1f5a449ffc8e73dc96cec6d27485c0498373edb5e7a2/agentp-0.0.0.tar.gz (from https://pypi.org/simple/agentp/), version: 0.0.0 2024-12-04T07:16:04,666 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/04/f5/a29949dd291199d9954033594de435b9b756cfc293a3fd180dbb3b5afb09/agentp-0.0.1-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,667 Found link https://files.pythonhosted.org/packages/2f/15/7564b8993f3f9f0395fe44f3740d2a0adab96652b08053968bc4ecdf4163/agentp-0.0.1.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.1 2024-12-04T07:16:04,667 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/88/df/e3671c4e9626f3619cd4b7a1a1f097b962a09ef77ba14b6c4bf19f09ad22/agentp-0.0.2-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,668 Found link https://files.pythonhosted.org/packages/e9/5d/cfe347c27bf280017f6b492de48360bdc3fe693ef9a0eb642c4eb7ceac03/agentp-0.0.2.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.2 2024-12-04T07:16:04,669 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/73/52/baae15f5c6826aeda64eb040df49627f1c11d6a2d4a00663d2aff00b014a/agentp-0.0.3-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,670 Found link https://files.pythonhosted.org/packages/a7/47/fe7e1d9f5fb2894bb4f7ef714430b32d177d76fca17e5bd3c04b9b7e1d4d/agentp-0.0.3.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.3 2024-12-04T07:16:04,671 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/fc/85/3e611c42a62f6bcd133550a49e59e9bdbdb608eba1558e4d4ccf14512ff8/agentp-0.0.4-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,672 Found link https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.4 2024-12-04T07:16:04,673 Fetching project page and analyzing links: https://www.piwheels.org/simple/agentp/ 2024-12-04T07:16:04,673 Getting page https://www.piwheels.org/simple/agentp/ 2024-12-04T07:16:04,675 Found index url https://www.piwheels.org/simple/ 2024-12-04T07:16:04,838 Fetched page https://www.piwheels.org/simple/agentp/ as text/html 2024-12-04T07:16:04,841 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.3-py3-none-any.whl#sha256=b34af4d99ce4b30f338cce8de9f1320bb9a7f94c8c6c69f829e416f72826cb32 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,841 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.2-py3-none-any.whl#sha256=545867d7a817cae521cbcd185ff85b3c7c75894ffd0168362547c8e92d3c257b (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,842 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.1-py3-none-any.whl#sha256=1dd0042825fe12a927a71dcfa5513862427dcd96e304ca82a21b17d51b34ea8f (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-04T07:16:04,843 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.0-py3-none-any.whl#sha256=d8a9c41725f1c435b0e2faa6b7688de8973d4049ee5fe99e6e285c4b423f6c11 (from https://www.piwheels.org/simple/agentp/) 2024-12-04T07:16:04,843 Skipping link: not a file: https://www.piwheels.org/simple/agentp/ 2024-12-04T07:16:04,844 Skipping link: not a file: https://pypi.org/simple/agentp/ 2024-12-04T07:16:04,864 Given no hashes to check 1 links for project 'agentp': discarding no candidates 2024-12-04T07:16:04,865 Collecting agentp==0.0.4 2024-12-04T07:16:04,868 Created temporary directory: /tmp/pip-unpack-xu5xeqfo 2024-12-04T07:16:05,009 Downloading agentp-0.0.4.tar.gz (13.5 MB) 2024-12-04T07:16:07,413 Added agentp==0.0.4 from https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-mpzvfwtp' 2024-12-04T07:16:07,415 Running setup.py (path:/tmp/pip-wheel-8so48v0h/agentp_9617df50562d4bbd8aab2df904fc97c7/setup.py) egg_info for package agentp 2024-12-04T07:16:07,416 Created temporary directory: /tmp/pip-pip-egg-info-xnlfa1z1 2024-12-04T07:16:07,417 Preparing metadata (setup.py): started 2024-12-04T07:16:07,418 Running command python setup.py egg_info 2024-12-04T07:16:08,496 running egg_info 2024-12-04T07:16:08,525 creating /tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info 2024-12-04T07:16:08,527 writing /tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/PKG-INFO 2024-12-04T07:16:08,531 writing dependency_links to /tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/dependency_links.txt 2024-12-04T07:16:08,533 writing requirements to /tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/requires.txt 2024-12-04T07:16:08,534 writing top-level names to /tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/top_level.txt 2024-12-04T07:16:08,536 writing manifest file '/tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/SOURCES.txt' 2024-12-04T07:16:08,627 reading manifest file '/tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/SOURCES.txt' 2024-12-04T07:16:08,628 reading manifest template 'MANIFEST.in' 2024-12-04T07:16:08,639 writing manifest file '/tmp/pip-pip-egg-info-xnlfa1z1/agentp.egg-info/SOURCES.txt' 2024-12-04T07:16:08,750 Preparing metadata (setup.py): finished with status 'done' 2024-12-04T07:16:08,754 Source in /tmp/pip-wheel-8so48v0h/agentp_9617df50562d4bbd8aab2df904fc97c7 has version 0.0.4, which satisfies requirement agentp==0.0.4 from https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz 2024-12-04T07:16:08,755 Removed agentp==0.0.4 from https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-mpzvfwtp' 2024-12-04T07:16:08,761 Created temporary directory: /tmp/pip-unpack-s0k4evfm 2024-12-04T07:16:08,762 Created temporary directory: /tmp/pip-unpack-_khj_y6r 2024-12-04T07:16:08,763 Building wheels for collected packages: agentp 2024-12-04T07:16:08,767 Created temporary directory: /tmp/pip-wheel-881jproc 2024-12-04T07:16:08,768 Building wheel for agentp (setup.py): started 2024-12-04T07:16:08,769 Destination directory: /tmp/pip-wheel-881jproc 2024-12-04T07:16:08,770 Running command python setup.py bdist_wheel 2024-12-04T07:16:09,793 running bdist_wheel 2024-12-04T07:16:09,924 running build 2024-12-04T07:16:09,924 running build_py 2024-12-04T07:16:09,955 creating build/lib/agentp 2024-12-04T07:16:09,957 copying agentp/Project.py -> build/lib/agentp 2024-12-04T07:16:09,960 copying agentp/TWAS.py -> build/lib/agentp 2024-12-04T07:16:09,962 copying agentp/__init__.py -> build/lib/agentp 2024-12-04T07:16:09,964 copying agentp/GWAS.py -> build/lib/agentp 2024-12-04T07:16:09,967 copying agentp/Genotypes.py -> build/lib/agentp 2024-12-04T07:16:09,969 copying agentp/GREX.py -> build/lib/agentp 2024-12-04T07:16:09,972 copying agentp/Static.py -> build/lib/agentp 2024-12-04T07:16:09,973 running egg_info 2024-12-04T07:16:10,001 writing agentp.egg-info/PKG-INFO 2024-12-04T07:16:10,004 writing dependency_links to agentp.egg-info/dependency_links.txt 2024-12-04T07:16:10,006 writing requirements to agentp.egg-info/requires.txt 2024-12-04T07:16:10,007 writing top-level names to agentp.egg-info/top_level.txt 2024-12-04T07:16:10,038 reading manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-04T07:16:10,048 reading manifest template 'MANIFEST.in' 2024-12-04T07:16:10,059 writing manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-04T07:16:10,062 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.models' is absent from the `packages` configuration. 2024-12-04T07:16:10,062 !! 2024-12-04T07:16:10,063 ******************************************************************************** 2024-12-04T07:16:10,064 ############################ 2024-12-04T07:16:10,064 # Package would be ignored # 2024-12-04T07:16:10,065 ############################ 2024-12-04T07:16:10,065 Python recognizes 'agentp.models' as an importable package[^1], 2024-12-04T07:16:10,066 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,067 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,068 package, please make sure that 'agentp.models' is explicitly added 2024-12-04T07:16:10,068 to the `packages` configuration field. 2024-12-04T07:16:10,070 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,070 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,071 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,072 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,074 If you don't want 'agentp.models' to be distributed and are 2024-12-04T07:16:10,074 already explicitly excluding 'agentp.models' via 2024-12-04T07:16:10,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,076 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,077 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,080 even if it does not contain any `.py` files. 2024-12-04T07:16:10,081 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,081 directory, all directories are treated like packages. 2024-12-04T07:16:10,082 ******************************************************************************** 2024-12-04T07:16:10,083 !! 2024-12-04T07:16:10,084 check.warn(importable) 2024-12-04T07:16:10,085 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.software.MetaXcan.software' is absent from the `packages` configuration. 2024-12-04T07:16:10,085 !! 2024-12-04T07:16:10,086 ******************************************************************************** 2024-12-04T07:16:10,086 ############################ 2024-12-04T07:16:10,087 # Package would be ignored # 2024-12-04T07:16:10,087 ############################ 2024-12-04T07:16:10,088 Python recognizes 'agentp.software.MetaXcan.software' as an importable package[^1], 2024-12-04T07:16:10,088 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,089 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,089 package, please make sure that 'agentp.software.MetaXcan.software' is explicitly added 2024-12-04T07:16:10,090 to the `packages` configuration field. 2024-12-04T07:16:10,091 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,092 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,092 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,095 If you don't want 'agentp.software.MetaXcan.software' to be distributed and are 2024-12-04T07:16:10,095 already explicitly excluding 'agentp.software.MetaXcan.software' via 2024-12-04T07:16:10,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,096 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,096 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,098 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,100 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,101 even if it does not contain any `.py` files. 2024-12-04T07:16:10,101 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,102 directory, all directories are treated like packages. 2024-12-04T07:16:10,103 ******************************************************************************** 2024-12-04T07:16:10,104 !! 2024-12-04T07:16:10,104 check.warn(importable) 2024-12-04T07:16:10,105 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.software.fusion_twas' is absent from the `packages` configuration. 2024-12-04T07:16:10,106 !! 2024-12-04T07:16:10,107 ******************************************************************************** 2024-12-04T07:16:10,107 ############################ 2024-12-04T07:16:10,108 # Package would be ignored # 2024-12-04T07:16:10,108 ############################ 2024-12-04T07:16:10,109 Python recognizes 'agentp.software.fusion_twas' as an importable package[^1], 2024-12-04T07:16:10,110 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,111 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,111 package, please make sure that 'agentp.software.fusion_twas' is explicitly added 2024-12-04T07:16:10,112 to the `packages` configuration field. 2024-12-04T07:16:10,113 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,114 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,115 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,116 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,118 If you don't want 'agentp.software.fusion_twas' to be distributed and are 2024-12-04T07:16:10,118 already explicitly excluding 'agentp.software.fusion_twas' via 2024-12-04T07:16:10,118 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,119 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,120 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,124 even if it does not contain any `.py` files. 2024-12-04T07:16:10,124 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,125 directory, all directories are treated like packages. 2024-12-04T07:16:10,125 ******************************************************************************** 2024-12-04T07:16:10,126 !! 2024-12-04T07:16:10,127 check.warn(importable) 2024-12-04T07:16:10,128 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.software.ldsc' is absent from the `packages` configuration. 2024-12-04T07:16:10,128 !! 2024-12-04T07:16:10,129 ******************************************************************************** 2024-12-04T07:16:10,129 ############################ 2024-12-04T07:16:10,130 # Package would be ignored # 2024-12-04T07:16:10,131 ############################ 2024-12-04T07:16:10,131 Python recognizes 'agentp.software.ldsc' as an importable package[^1], 2024-12-04T07:16:10,131 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,132 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,133 package, please make sure that 'agentp.software.ldsc' is explicitly added 2024-12-04T07:16:10,133 to the `packages` configuration field. 2024-12-04T07:16:10,134 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,135 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,135 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,137 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,139 If you don't want 'agentp.software.ldsc' to be distributed and are 2024-12-04T07:16:10,139 already explicitly excluding 'agentp.software.ldsc' via 2024-12-04T07:16:10,140 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,141 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,142 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,143 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,145 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,145 even if it does not contain any `.py` files. 2024-12-04T07:16:10,146 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,147 directory, all directories are treated like packages. 2024-12-04T07:16:10,147 ******************************************************************************** 2024-12-04T07:16:10,148 !! 2024-12-04T07:16:10,148 check.warn(importable) 2024-12-04T07:16:10,149 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.software.plink2R' is absent from the `packages` configuration. 2024-12-04T07:16:10,149 !! 2024-12-04T07:16:10,150 ******************************************************************************** 2024-12-04T07:16:10,150 ############################ 2024-12-04T07:16:10,151 # Package would be ignored # 2024-12-04T07:16:10,151 ############################ 2024-12-04T07:16:10,152 Python recognizes 'agentp.software.plink2R' as an importable package[^1], 2024-12-04T07:16:10,152 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,153 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,153 package, please make sure that 'agentp.software.plink2R' is explicitly added 2024-12-04T07:16:10,154 to the `packages` configuration field. 2024-12-04T07:16:10,155 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,156 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,157 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,159 If you don't want 'agentp.software.plink2R' to be distributed and are 2024-12-04T07:16:10,159 already explicitly excluding 'agentp.software.plink2R' via 2024-12-04T07:16:10,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,161 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,162 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,165 even if it does not contain any `.py` files. 2024-12-04T07:16:10,166 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,167 directory, all directories are treated like packages. 2024-12-04T07:16:10,167 ******************************************************************************** 2024-12-04T07:16:10,168 !! 2024-12-04T07:16:10,168 check.warn(importable) 2024-12-04T07:16:10,169 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.software.regenie' is absent from the `packages` configuration. 2024-12-04T07:16:10,170 !! 2024-12-04T07:16:10,171 ******************************************************************************** 2024-12-04T07:16:10,171 ############################ 2024-12-04T07:16:10,172 # Package would be ignored # 2024-12-04T07:16:10,172 ############################ 2024-12-04T07:16:10,173 Python recognizes 'agentp.software.regenie' as an importable package[^1], 2024-12-04T07:16:10,174 but it is absent from setuptools' `packages` configuration. 2024-12-04T07:16:10,175 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T07:16:10,175 package, please make sure that 'agentp.software.regenie' is explicitly added 2024-12-04T07:16:10,176 to the `packages` configuration field. 2024-12-04T07:16:10,177 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T07:16:10,177 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T07:16:10,178 instead of `find_packages(...)`/`find:`). 2024-12-04T07:16:10,179 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T07:16:10,180 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T07:16:10,181 If you don't want 'agentp.software.regenie' to be distributed and are 2024-12-04T07:16:10,181 already explicitly excluding 'agentp.software.regenie' via 2024-12-04T07:16:10,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T07:16:10,182 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T07:16:10,183 combination with a more fine grained `package-data` configuration. 2024-12-04T07:16:10,184 You can read more about "package data files" on setuptools documentation page: 2024-12-04T07:16:10,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T07:16:10,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T07:16:10,187 even if it does not contain any `.py` files. 2024-12-04T07:16:10,188 On the other hand, currently there is no concept of package data 2024-12-04T07:16:10,189 directory, all directories are treated like packages. 2024-12-04T07:16:10,189 ******************************************************************************** 2024-12-04T07:16:10,191 !! 2024-12-04T07:16:10,192 check.warn(importable) 2024-12-04T07:16:10,192 creating build/lib/agentp/models 2024-12-04T07:16:10,193 copying agentp/models/README.txt -> build/lib/agentp/models 2024-12-04T07:16:10,194 creating build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,194 copying agentp/software/MetaXcan/software/.gitignore -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,195 copying agentp/software/MetaXcan/software/AUTHORS -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,195 copying agentp/software/MetaXcan/software/BuildExpressionProduct.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,196 copying agentp/software/MetaXcan/software/CHANGES -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,196 copying agentp/software/MetaXcan/software/COPYRIGHT -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,197 copying agentp/software/MetaXcan/software/CovarianceBuilder.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,198 copying agentp/software/MetaXcan/software/M00_prerequisites.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,198 copying agentp/software/MetaXcan/software/M01_covariances_correlations.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,199 copying agentp/software/MetaXcan/software/M02_variances.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,199 copying agentp/software/MetaXcan/software/M03_betas.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,200 copying agentp/software/MetaXcan/software/M04_zscores.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,200 copying agentp/software/MetaXcan/software/MANIFEST.in -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,201 copying agentp/software/MetaXcan/software/MPSimulation.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,202 copying agentp/software/MetaXcan/software/MetaMany.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,202 copying agentp/software/MetaXcan/software/MetaXcanUI.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,203 copying agentp/software/MetaXcan/software/MulTiXcan.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,204 copying agentp/software/MetaXcan/software/PrediXcan.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,204 copying agentp/software/MetaXcan/software/PrediXcanAssociation.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,205 copying agentp/software/MetaXcan/software/Predict.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,205 copying agentp/software/MetaXcan/software/Readme.md -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,206 copying agentp/software/MetaXcan/software/SMulTiXcan.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,206 copying agentp/software/MetaXcan/software/SPrediXcan.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,206 copying agentp/software/MetaXcan/software/ToHDF5.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,207 copying agentp/software/MetaXcan/software/__init__.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,207 copying agentp/software/MetaXcan/software/build_minimal_data_requirements.sh -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,208 copying agentp/software/MetaXcan/software/build_minimal_example_data.sh -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,208 copying agentp/software/MetaXcan/software/conda_env.yaml -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,209 copying agentp/software/MetaXcan/software/ez_setup.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,210 copying agentp/software/MetaXcan/software/requirements.txt -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,210 copying agentp/software/MetaXcan/software/setup.cfg -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,211 copying agentp/software/MetaXcan/software/setup.py -> build/lib/agentp/software/MetaXcan/software 2024-12-04T07:16:10,211 creating build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,212 copying agentp/software/fusion_twas/FUSION.assoc_test.R -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,212 copying agentp/software/fusion_twas/FUSION.compute_weights.R -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,213 copying agentp/software/fusion_twas/FUSION.post_process.R -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,214 copying agentp/software/fusion_twas/LICENSE -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,214 copying agentp/software/fusion_twas/README.md -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,215 copying agentp/software/fusion_twas/gcta_nr_robust -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,334 copying agentp/software/fusion_twas/glist-hg19 -> build/lib/agentp/software/fusion_twas 2024-12-04T07:16:10,349 creating build/lib/agentp/software/ldsc 2024-12-04T07:16:10,350 copying agentp/software/ldsc/CHANGELOG -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,353 copying agentp/software/ldsc/LICENSE -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,356 copying agentp/software/ldsc/README.md -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,358 copying agentp/software/ldsc/environment.yml -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,361 copying agentp/software/ldsc/ldsc.py -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,364 copying agentp/software/ldsc/make_annot.py -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,366 copying agentp/software/ldsc/munge_sumstats.py -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,369 copying agentp/software/ldsc/requirements.txt -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,372 copying agentp/software/ldsc/setup.py -> build/lib/agentp/software/ldsc 2024-12-04T07:16:10,374 creating build/lib/agentp/software/plink2R 2024-12-04T07:16:10,375 copying agentp/software/plink2R/README.md -> build/lib/agentp/software/plink2R 2024-12-04T07:16:10,377 copying agentp/software/plink2R/data.bed -> build/lib/agentp/software/plink2R 2024-12-04T07:16:10,440 copying agentp/software/plink2R/data.bim -> build/lib/agentp/software/plink2R 2024-12-04T07:16:10,448 copying agentp/software/plink2R/data.fam -> build/lib/agentp/software/plink2R 2024-12-04T07:16:10,451 copying agentp/software/plink2R/plink2R.R -> build/lib/agentp/software/plink2R 2024-12-04T07:16:10,453 creating build/lib/agentp/software/regenie 2024-12-04T07:16:10,454 copying agentp/software/regenie/.dockerignore -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,456 copying agentp/software/regenie/CMakeLists.txt -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,459 copying agentp/software/regenie/Dockerfile -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,461 copying agentp/software/regenie/Dockerfile_mkl -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,463 copying agentp/software/regenie/Dockerfile_openblas -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,465 copying agentp/software/regenie/LICENSE -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,467 copying agentp/software/regenie/Makefile -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,470 copying agentp/software/regenie/README.md -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,472 copying agentp/software/regenie/RELEASE_LOG.md -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,475 copying agentp/software/regenie/VERSION -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,478 copying agentp/software/regenie/regenie -> build/lib/agentp/software/regenie 2024-12-04T07:16:10,656 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-04T07:16:10,656 !! 2024-12-04T07:16:10,657 ******************************************************************************** 2024-12-04T07:16:10,658 Please avoid running ``setup.py`` directly. 2024-12-04T07:16:10,659 Instead, use pypa/build, pypa/installer or other 2024-12-04T07:16:10,659 standards-based tools. 2024-12-04T07:16:10,660 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-04T07:16:10,661 ******************************************************************************** 2024-12-04T07:16:10,662 !! 2024-12-04T07:16:10,663 self.initialize_options() 2024-12-04T07:16:10,685 installing to build/bdist.linux-armv7l/wheel 2024-12-04T07:16:10,686 running install 2024-12-04T07:16:10,710 running install_lib 2024-12-04T07:16:10,740 creating build/bdist.linux-armv7l/wheel 2024-12-04T07:16:10,742 creating build/bdist.linux-armv7l/wheel/agentp 2024-12-04T07:16:10,744 creating build/bdist.linux-armv7l/wheel/agentp/models 2024-12-04T07:16:10,746 copying build/lib/agentp/models/README.txt -> build/bdist.linux-armv7l/wheel/./agentp/models 2024-12-04T07:16:10,748 copying build/lib/agentp/Project.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:10,751 creating build/bdist.linux-armv7l/wheel/agentp/software 2024-12-04T07:16:10,752 creating build/bdist.linux-armv7l/wheel/agentp/software/ldsc 2024-12-04T07:16:10,756 copying build/lib/agentp/software/ldsc/CHANGELOG -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,759 copying build/lib/agentp/software/ldsc/ldsc.py -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,762 copying build/lib/agentp/software/ldsc/munge_sumstats.py -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,764 copying build/lib/agentp/software/ldsc/environment.yml -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,766 copying build/lib/agentp/software/ldsc/setup.py -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,768 copying build/lib/agentp/software/ldsc/make_annot.py -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,771 copying build/lib/agentp/software/ldsc/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,773 copying build/lib/agentp/software/ldsc/requirements.txt -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,775 copying build/lib/agentp/software/ldsc/README.md -> build/bdist.linux-armv7l/wheel/./agentp/software/ldsc 2024-12-04T07:16:10,778 creating build/bdist.linux-armv7l/wheel/agentp/software/MetaXcan 2024-12-04T07:16:10,781 creating build/bdist.linux-armv7l/wheel/agentp/software/MetaXcan/software 2024-12-04T07:16:10,783 copying build/lib/agentp/software/MetaXcan/software/MANIFEST.in -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,785 copying build/lib/agentp/software/MetaXcan/software/.gitignore -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,786 copying build/lib/agentp/software/MetaXcan/software/MetaMany.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,789 copying build/lib/agentp/software/MetaXcan/software/SMulTiXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,791 copying build/lib/agentp/software/MetaXcan/software/build_minimal_data_requirements.sh -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,794 copying build/lib/agentp/software/MetaXcan/software/SPrediXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,796 copying build/lib/agentp/software/MetaXcan/software/M01_covariances_correlations.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,798 copying build/lib/agentp/software/MetaXcan/software/M04_zscores.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,801 copying build/lib/agentp/software/MetaXcan/software/M03_betas.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,804 copying build/lib/agentp/software/MetaXcan/software/setup.cfg -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,806 copying build/lib/agentp/software/MetaXcan/software/CovarianceBuilder.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,808 copying build/lib/agentp/software/MetaXcan/software/BuildExpressionProduct.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,811 copying build/lib/agentp/software/MetaXcan/software/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,812 copying build/lib/agentp/software/MetaXcan/software/ToHDF5.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,815 copying build/lib/agentp/software/MetaXcan/software/Predict.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,817 copying build/lib/agentp/software/MetaXcan/software/MulTiXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,820 copying build/lib/agentp/software/MetaXcan/software/Readme.md -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,822 copying build/lib/agentp/software/MetaXcan/software/build_minimal_example_data.sh -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,824 copying build/lib/agentp/software/MetaXcan/software/CHANGES -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,827 copying build/lib/agentp/software/MetaXcan/software/AUTHORS -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,828 copying build/lib/agentp/software/MetaXcan/software/setup.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,831 copying build/lib/agentp/software/MetaXcan/software/ez_setup.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,833 copying build/lib/agentp/software/MetaXcan/software/MetaXcanUI.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,835 copying build/lib/agentp/software/MetaXcan/software/MPSimulation.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,838 copying build/lib/agentp/software/MetaXcan/software/conda_env.yaml -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,840 copying build/lib/agentp/software/MetaXcan/software/PrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,842 copying build/lib/agentp/software/MetaXcan/software/PrediXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,844 copying build/lib/agentp/software/MetaXcan/software/requirements.txt -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,846 copying build/lib/agentp/software/MetaXcan/software/M00_prerequisites.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,848 copying build/lib/agentp/software/MetaXcan/software/M02_variances.py -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,851 copying build/lib/agentp/software/MetaXcan/software/COPYRIGHT -> build/bdist.linux-armv7l/wheel/./agentp/software/MetaXcan/software 2024-12-04T07:16:10,853 creating build/bdist.linux-armv7l/wheel/agentp/software/fusion_twas 2024-12-04T07:16:10,854 copying build/lib/agentp/software/fusion_twas/glist-hg19 -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:10,869 copying build/lib/agentp/software/fusion_twas/FUSION.post_process.R -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:10,872 copying build/lib/agentp/software/fusion_twas/gcta_nr_robust -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:11,007 copying build/lib/agentp/software/fusion_twas/FUSION.compute_weights.R -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:11,009 copying build/lib/agentp/software/fusion_twas/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:11,012 copying build/lib/agentp/software/fusion_twas/FUSION.assoc_test.R -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:11,015 copying build/lib/agentp/software/fusion_twas/README.md -> build/bdist.linux-armv7l/wheel/./agentp/software/fusion_twas 2024-12-04T07:16:11,018 creating build/bdist.linux-armv7l/wheel/agentp/software/regenie 2024-12-04T07:16:11,019 copying build/lib/agentp/software/regenie/VERSION -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,021 copying build/lib/agentp/software/regenie/.dockerignore -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,023 copying build/lib/agentp/software/regenie/RELEASE_LOG.md -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,026 copying build/lib/agentp/software/regenie/regenie -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,171 copying build/lib/agentp/software/regenie/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,173 copying build/lib/agentp/software/regenie/Makefile -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,176 copying build/lib/agentp/software/regenie/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,178 copying build/lib/agentp/software/regenie/Dockerfile -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,180 copying build/lib/agentp/software/regenie/Dockerfile_mkl -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,183 copying build/lib/agentp/software/regenie/Dockerfile_openblas -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,185 copying build/lib/agentp/software/regenie/README.md -> build/bdist.linux-armv7l/wheel/./agentp/software/regenie 2024-12-04T07:16:11,188 creating build/bdist.linux-armv7l/wheel/agentp/software/plink2R 2024-12-04T07:16:11,189 copying build/lib/agentp/software/plink2R/data.fam -> build/bdist.linux-armv7l/wheel/./agentp/software/plink2R 2024-12-04T07:16:11,192 copying build/lib/agentp/software/plink2R/plink2R.R -> build/bdist.linux-armv7l/wheel/./agentp/software/plink2R 2024-12-04T07:16:11,194 copying build/lib/agentp/software/plink2R/data.bim -> build/bdist.linux-armv7l/wheel/./agentp/software/plink2R 2024-12-04T07:16:11,203 copying build/lib/agentp/software/plink2R/README.md -> build/bdist.linux-armv7l/wheel/./agentp/software/plink2R 2024-12-04T07:16:11,205 copying build/lib/agentp/software/plink2R/data.bed -> build/bdist.linux-armv7l/wheel/./agentp/software/plink2R 2024-12-04T07:16:11,266 copying build/lib/agentp/TWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,269 copying build/lib/agentp/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,271 copying build/lib/agentp/GWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,274 copying build/lib/agentp/Genotypes.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,276 copying build/lib/agentp/GREX.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,279 copying build/lib/agentp/Static.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-04T07:16:11,281 running install_egg_info 2024-12-04T07:16:11,314 Copying agentp.egg-info to build/bdist.linux-armv7l/wheel/./agentp-0.0.4-py3.11.egg-info 2024-12-04T07:16:11,324 running install_scripts 2024-12-04T07:16:11,337 creating build/bdist.linux-armv7l/wheel/agentp-0.0.4.dist-info/WHEEL 2024-12-04T07:16:11,339 creating '/tmp/pip-wheel-881jproc/agentp-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-04T07:16:11,342 adding 'agentp/GREX.py' 2024-12-04T07:16:11,345 adding 'agentp/GWAS.py' 2024-12-04T07:16:11,346 adding 'agentp/Genotypes.py' 2024-12-04T07:16:11,349 adding 'agentp/Project.py' 2024-12-04T07:16:11,350 adding 'agentp/Static.py' 2024-12-04T07:16:11,353 adding 'agentp/TWAS.py' 2024-12-04T07:16:11,355 adding 'agentp/__init__.py' 2024-12-04T07:16:11,356 adding 'agentp/models/README.txt' 2024-12-04T07:16:11,360 adding 'agentp/software/MetaXcan/software/.gitignore' 2024-12-04T07:16:11,361 adding 'agentp/software/MetaXcan/software/AUTHORS' 2024-12-04T07:16:11,363 adding 'agentp/software/MetaXcan/software/BuildExpressionProduct.py' 2024-12-04T07:16:11,365 adding 'agentp/software/MetaXcan/software/CHANGES' 2024-12-04T07:16:11,367 adding 'agentp/software/MetaXcan/software/COPYRIGHT' 2024-12-04T07:16:11,368 adding 'agentp/software/MetaXcan/software/CovarianceBuilder.py' 2024-12-04T07:16:11,370 adding 'agentp/software/MetaXcan/software/M00_prerequisites.py' 2024-12-04T07:16:11,372 adding 'agentp/software/MetaXcan/software/M01_covariances_correlations.py' 2024-12-04T07:16:11,374 adding 'agentp/software/MetaXcan/software/M02_variances.py' 2024-12-04T07:16:11,376 adding 'agentp/software/MetaXcan/software/M03_betas.py' 2024-12-04T07:16:11,378 adding 'agentp/software/MetaXcan/software/M04_zscores.py' 2024-12-04T07:16:11,380 adding 'agentp/software/MetaXcan/software/MANIFEST.in' 2024-12-04T07:16:11,383 adding 'agentp/software/MetaXcan/software/MPSimulation.py' 2024-12-04T07:16:11,385 adding 'agentp/software/MetaXcan/software/MetaMany.py' 2024-12-04T07:16:11,387 adding 'agentp/software/MetaXcan/software/MetaXcanUI.py' 2024-12-04T07:16:11,389 adding 'agentp/software/MetaXcan/software/MulTiXcan.py' 2024-12-04T07:16:11,391 adding 'agentp/software/MetaXcan/software/PrediXcan.py' 2024-12-04T07:16:11,393 adding 'agentp/software/MetaXcan/software/PrediXcanAssociation.py' 2024-12-04T07:16:11,395 adding 'agentp/software/MetaXcan/software/Predict.py' 2024-12-04T07:16:11,398 adding 'agentp/software/MetaXcan/software/Readme.md' 2024-12-04T07:16:11,399 adding 'agentp/software/MetaXcan/software/SMulTiXcan.py' 2024-12-04T07:16:11,401 adding 'agentp/software/MetaXcan/software/SPrediXcan.py' 2024-12-04T07:16:11,403 adding 'agentp/software/MetaXcan/software/ToHDF5.py' 2024-12-04T07:16:11,404 adding 'agentp/software/MetaXcan/software/__init__.py' 2024-12-04T07:16:11,406 adding 'agentp/software/MetaXcan/software/build_minimal_data_requirements.sh' 2024-12-04T07:16:11,407 adding 'agentp/software/MetaXcan/software/build_minimal_example_data.sh' 2024-12-04T07:16:11,409 adding 'agentp/software/MetaXcan/software/conda_env.yaml' 2024-12-04T07:16:11,411 adding 'agentp/software/MetaXcan/software/ez_setup.py' 2024-12-04T07:16:11,413 adding 'agentp/software/MetaXcan/software/requirements.txt' 2024-12-04T07:16:11,415 adding 'agentp/software/MetaXcan/software/setup.cfg' 2024-12-04T07:16:11,416 adding 'agentp/software/MetaXcan/software/setup.py' 2024-12-04T07:16:11,420 adding 'agentp/software/fusion_twas/FUSION.assoc_test.R' 2024-12-04T07:16:11,422 adding 'agentp/software/fusion_twas/FUSION.compute_weights.R' 2024-12-04T07:16:11,426 adding 'agentp/software/fusion_twas/FUSION.post_process.R' 2024-12-04T07:16:11,433 adding 'agentp/software/fusion_twas/LICENSE' 2024-12-04T07:16:11,435 adding 'agentp/software/fusion_twas/README.md' 2024-12-04T07:16:12,944 adding 'agentp/software/fusion_twas/gcta_nr_robust' 2024-12-04T07:16:13,191 adding 'agentp/software/fusion_twas/glist-hg19' 2024-12-04T07:16:13,198 adding 'agentp/software/ldsc/CHANGELOG' 2024-12-04T07:16:13,205 adding 'agentp/software/ldsc/LICENSE' 2024-12-04T07:16:13,207 adding 'agentp/software/ldsc/README.md' 2024-12-04T07:16:13,209 adding 'agentp/software/ldsc/environment.yml' 2024-12-04T07:16:13,213 adding 'agentp/software/ldsc/ldsc.py' 2024-12-04T07:16:13,215 adding 'agentp/software/ldsc/make_annot.py' 2024-12-04T07:16:13,219 adding 'agentp/software/ldsc/munge_sumstats.py' 2024-12-04T07:16:13,221 adding 'agentp/software/ldsc/requirements.txt' 2024-12-04T07:16:13,223 adding 'agentp/software/ldsc/setup.py' 2024-12-04T07:16:13,225 adding 'agentp/software/plink2R/README.md' 2024-12-04T07:16:14,016 adding 'agentp/software/plink2R/data.bed' 2024-12-04T07:16:14,137 adding 'agentp/software/plink2R/data.bim' 2024-12-04T07:16:14,144 adding 'agentp/software/plink2R/data.fam' 2024-12-04T07:16:14,146 adding 'agentp/software/plink2R/plink2R.R' 2024-12-04T07:16:14,148 adding 'agentp/software/regenie/.dockerignore' 2024-12-04T07:16:14,150 adding 'agentp/software/regenie/CMakeLists.txt' 2024-12-04T07:16:14,152 adding 'agentp/software/regenie/Dockerfile' 2024-12-04T07:16:14,154 adding 'agentp/software/regenie/Dockerfile_mkl' 2024-12-04T07:16:14,156 adding 'agentp/software/regenie/Dockerfile_openblas' 2024-12-04T07:16:14,157 adding 'agentp/software/regenie/LICENSE' 2024-12-04T07:16:14,159 adding 'agentp/software/regenie/Makefile' 2024-12-04T07:16:14,162 adding 'agentp/software/regenie/README.md' 2024-12-04T07:16:14,164 adding 'agentp/software/regenie/RELEASE_LOG.md' 2024-12-04T07:16:14,166 adding 'agentp/software/regenie/VERSION' 2024-12-04T07:16:15,805 adding 'agentp/software/regenie/regenie' 2024-12-04T07:16:15,868 adding 'agentp-0.0.4.dist-info/METADATA' 2024-12-04T07:16:15,869 adding 'agentp-0.0.4.dist-info/WHEEL' 2024-12-04T07:16:15,871 adding 'agentp-0.0.4.dist-info/top_level.txt' 2024-12-04T07:16:15,873 adding 'agentp-0.0.4.dist-info/RECORD' 2024-12-04T07:16:15,981 removing build/bdist.linux-armv7l/wheel 2024-12-04T07:16:16,123 Building wheel for agentp (setup.py): finished with status 'done' 2024-12-04T07:16:16,225 Created wheel for agentp: filename=agentp-0.0.4-py3-none-any.whl size=10023150 sha256=d6254a39e689f872b10ced4daa75dbbb2325847199ba3d2620974375a64b79db 2024-12-04T07:16:16,227 Stored in directory: /tmp/pip-ephem-wheel-cache-wwu89ezf/wheels/f4/bf/e4/8d57b00520c438f5499fc64fa817f6e5ee0f1e730882b1776b 2024-12-04T07:16:16,241 Successfully built agentp 2024-12-04T07:16:16,498 Removed build tracker: '/tmp/pip-build-tracker-mpzvfwtp'