2024-12-04T11:31:29,343 Created temporary directory: /tmp/pip-build-tracker-nnji5k2_ 2024-12-04T11:31:29,344 Initialized build tracking at /tmp/pip-build-tracker-nnji5k2_ 2024-12-04T11:31:29,345 Created build tracker: /tmp/pip-build-tracker-nnji5k2_ 2024-12-04T11:31:29,345 Entered build tracker: /tmp/pip-build-tracker-nnji5k2_ 2024-12-04T11:31:29,346 Created temporary directory: /tmp/pip-wheel-enwv0d0r 2024-12-04T11:31:29,350 Created temporary directory: /tmp/pip-ephem-wheel-cache-tymsdoqm 2024-12-04T11:31:29,393 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-04T11:31:29,395 2 location(s) to search for versions of pyfus-lib: 2024-12-04T11:31:29,395 * https://pypi.org/simple/pyfus-lib/ 2024-12-04T11:31:29,395 * https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T11:31:29,396 Fetching project page and analyzing links: https://pypi.org/simple/pyfus-lib/ 2024-12-04T11:31:29,397 Getting page https://pypi.org/simple/pyfus-lib/ 2024-12-04T11:31:29,398 Found index url https://pypi.org/simple/ 2024-12-04T11:31:29,631 Fetched page https://pypi.org/simple/pyfus-lib/ as application/vnd.pypi.simple.v1+json 2024-12-04T11:31:29,634 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/7a/7b/5e426ebb52d19e6fdad724e735bf2dd85f120412c5c38760c70a97019859/pyfus_lib-0.1.4-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T11:31:29,635 Found link https://files.pythonhosted.org/packages/19/75/44e13edf654b1ffdec76dd697030fd65e18f9fe6dbacf7e62933a2380ccc/pyfus_lib-0.1.4.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.4 2024-12-04T11:31:29,636 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/d3/52/a6afb452d218fe18196807c2d648f2317303b3f79895ab3fba2ccf91d665/pyfus_lib-0.1.5-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T11:31:29,637 Found link https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.5 2024-12-04T11:31:29,673 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/25/22/43026bf146e6e45cdaebc51d2b0c055b1fd6ad1a10df5ac4b7eddac04fbc/pyfus_lib-1.0.0-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T11:31:29,674 Found link https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.0 2024-12-04T11:31:29,675 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T11:31:29,675 Getting page https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T11:31:29,677 Found index url https://www.piwheels.org/simple/ 2024-12-04T11:31:29,837 Fetched page https://www.piwheels.org/simple/pyfus-lib/ as text/html 2024-12-04T11:31:29,839 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.5-py3-none-any.whl#sha256=ed070f1a51d3fd23c542b61c6a6c2cb863ebf9d11a2f15ebc3ab7c300cf882e7 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T11:31:29,839 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.4-py3-none-any.whl#sha256=2984a83dbf3708f0a6f63c5c7fe47a35885eabbf0fd460372100e23b189c9126 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T11:31:29,840 Skipping link: not a file: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T11:31:29,841 Skipping link: not a file: https://pypi.org/simple/pyfus-lib/ 2024-12-04T11:31:29,858 Given no hashes to check 1 links for project 'pyfus-lib': discarding no candidates 2024-12-04T11:31:29,860 Collecting pyfus-lib==1.0.0 2024-12-04T11:31:29,862 Created temporary directory: /tmp/pip-unpack-6j95773e 2024-12-04T11:31:30,087 Downloading pyfus_lib-1.0.0.tar.gz (258 kB) 2024-12-04T11:31:30,702 Added pyfus-lib==1.0.0 from https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-nnji5k2_' 2024-12-04T11:31:30,704 Running setup.py (path:/tmp/pip-wheel-enwv0d0r/pyfus-lib_b6f0db908f88496ab4471a82534c6562/setup.py) egg_info for package pyfus-lib 2024-12-04T11:31:30,705 Created temporary directory: /tmp/pip-pip-egg-info-8nen8kg5 2024-12-04T11:31:30,706 Preparing metadata (setup.py): started 2024-12-04T11:31:30,707 Running command python setup.py egg_info 2024-12-04T11:31:31,235 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T11:31:31,236 warnings.warn(msg) 2024-12-04T11:31:31,772 running egg_info 2024-12-04T11:31:31,800 creating /tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info 2024-12-04T11:31:31,801 writing /tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/PKG-INFO 2024-12-04T11:31:31,805 writing dependency_links to /tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/dependency_links.txt 2024-12-04T11:31:31,807 writing requirements to /tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/requires.txt 2024-12-04T11:31:31,808 writing top-level names to /tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/top_level.txt 2024-12-04T11:31:31,810 writing manifest file '/tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T11:31:31,899 reading manifest file '/tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T11:31:31,901 reading manifest template 'MANIFEST.in' 2024-12-04T11:31:31,911 writing manifest file '/tmp/pip-pip-egg-info-8nen8kg5/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T11:31:32,019 Preparing metadata (setup.py): finished with status 'done' 2024-12-04T11:31:32,023 Source in /tmp/pip-wheel-enwv0d0r/pyfus-lib_b6f0db908f88496ab4471a82534c6562 has version 1.0.0, which satisfies requirement pyfus-lib==1.0.0 from https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz 2024-12-04T11:31:32,024 Removed pyfus-lib==1.0.0 from https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-nnji5k2_' 2024-12-04T11:31:32,031 Created temporary directory: /tmp/pip-unpack-u_8lbty9 2024-12-04T11:31:32,032 Created temporary directory: /tmp/pip-unpack-u0k1ntz0 2024-12-04T11:31:32,033 Building wheels for collected packages: pyfus-lib 2024-12-04T11:31:32,037 Created temporary directory: /tmp/pip-wheel-udjedvgn 2024-12-04T11:31:32,038 Building wheel for pyfus-lib (setup.py): started 2024-12-04T11:31:32,039 Destination directory: /tmp/pip-wheel-udjedvgn 2024-12-04T11:31:32,040 Running command python setup.py bdist_wheel 2024-12-04T11:31:32,573 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T11:31:32,574 warnings.warn(msg) 2024-12-04T11:31:33,069 running bdist_wheel 2024-12-04T11:31:33,198 running build 2024-12-04T11:31:33,199 running build_py 2024-12-04T11:31:33,229 creating build/lib/pyfus 2024-12-04T11:31:33,231 copying pyfus/registration.py -> build/lib/pyfus 2024-12-04T11:31:33,234 copying pyfus/correlation_analysis.py -> build/lib/pyfus 2024-12-04T11:31:33,236 copying pyfus/data_loading.py -> build/lib/pyfus 2024-12-04T11:31:33,239 copying pyfus/clustering.py -> build/lib/pyfus 2024-12-04T11:31:33,242 copying pyfus/utils.py -> build/lib/pyfus 2024-12-04T11:31:33,245 copying pyfus/global_variables.py -> build/lib/pyfus 2024-12-04T11:31:33,247 copying pyfus/autoencoders.py -> build/lib/pyfus 2024-12-04T11:31:33,249 copying pyfus/__init__.py -> build/lib/pyfus 2024-12-04T11:31:33,251 copying pyfus/ccf_v3_atlas_generation.py -> build/lib/pyfus 2024-12-04T11:31:33,253 copying pyfus/region_averaging_analysis.py -> build/lib/pyfus 2024-12-04T11:31:33,256 copying pyfus/quantification.py -> build/lib/pyfus 2024-12-04T11:31:33,259 copying pyfus/features_extraction.py -> build/lib/pyfus 2024-12-04T11:31:33,261 copying pyfus/quality_control.py -> build/lib/pyfus 2024-12-04T11:31:33,263 running egg_info 2024-12-04T11:31:33,290 writing pyfus_lib.egg-info/PKG-INFO 2024-12-04T11:31:33,293 writing dependency_links to pyfus_lib.egg-info/dependency_links.txt 2024-12-04T11:31:33,295 writing requirements to pyfus_lib.egg-info/requires.txt 2024-12-04T11:31:33,296 writing top-level names to pyfus_lib.egg-info/top_level.txt 2024-12-04T11:31:33,328 reading manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T11:31:33,332 reading manifest template 'MANIFEST.in' 2024-12-04T11:31:33,341 writing manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T11:31:33,343 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases' is absent from the `packages` configuration. 2024-12-04T11:31:33,344 !! 2024-12-04T11:31:33,345 ******************************************************************************** 2024-12-04T11:31:33,345 ############################ 2024-12-04T11:31:33,345 # Package would be ignored # 2024-12-04T11:31:33,346 ############################ 2024-12-04T11:31:33,346 Python recognizes 'pyfus.atlases' as an importable package[^1], 2024-12-04T11:31:33,347 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:33,348 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:33,348 package, please make sure that 'pyfus.atlases' is explicitly added 2024-12-04T11:31:33,349 to the `packages` configuration field. 2024-12-04T11:31:33,349 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:33,350 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:33,350 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:33,351 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:33,353 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:33,354 If you don't want 'pyfus.atlases' to be distributed and are 2024-12-04T11:31:33,354 already explicitly excluding 'pyfus.atlases' via 2024-12-04T11:31:33,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:33,355 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:33,356 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:33,357 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:33,358 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:33,359 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:33,360 even if it does not contain any `.py` files. 2024-12-04T11:31:33,360 On the other hand, currently there is no concept of package data 2024-12-04T11:31:33,361 directory, all directories are treated like packages. 2024-12-04T11:31:33,361 ******************************************************************************** 2024-12-04T11:31:33,362 !! 2024-12-04T11:31:33,363 check.warn(importable) 2024-12-04T11:31:33,364 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.__pycache__' is absent from the `packages` configuration. 2024-12-04T11:31:33,364 !! 2024-12-04T11:31:33,365 ******************************************************************************** 2024-12-04T11:31:33,366 ############################ 2024-12-04T11:31:33,366 # Package would be ignored # 2024-12-04T11:31:33,367 ############################ 2024-12-04T11:31:33,368 Python recognizes 'pyfus.atlases.__pycache__' as an importable package[^1], 2024-12-04T11:31:33,368 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:33,369 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:33,370 package, please make sure that 'pyfus.atlases.__pycache__' is explicitly added 2024-12-04T11:31:33,370 to the `packages` configuration field. 2024-12-04T11:31:33,371 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:33,372 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:33,372 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:33,373 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:33,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:33,375 If you don't want 'pyfus.atlases.__pycache__' to be distributed and are 2024-12-04T11:31:33,375 already explicitly excluding 'pyfus.atlases.__pycache__' via 2024-12-04T11:31:33,376 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:33,376 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:33,377 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:33,378 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:33,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:33,380 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:33,380 even if it does not contain any `.py` files. 2024-12-04T11:31:33,381 On the other hand, currently there is no concept of package data 2024-12-04T11:31:33,382 directory, all directories are treated like packages. 2024-12-04T11:31:33,382 ******************************************************************************** 2024-12-04T11:31:33,384 !! 2024-12-04T11:31:33,384 check.warn(importable) 2024-12-04T11:31:33,385 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists' is absent from the `packages` configuration. 2024-12-04T11:31:33,386 !! 2024-12-04T11:31:33,387 ******************************************************************************** 2024-12-04T11:31:33,388 ############################ 2024-12-04T11:31:33,389 # Package would be ignored # 2024-12-04T11:31:33,389 ############################ 2024-12-04T11:31:33,390 Python recognizes 'pyfus.atlases.atlases_lists' as an importable package[^1], 2024-12-04T11:31:33,390 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:33,392 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:33,392 package, please make sure that 'pyfus.atlases.atlases_lists' is explicitly added 2024-12-04T11:31:33,393 to the `packages` configuration field. 2024-12-04T11:31:33,394 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:33,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:33,395 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:33,396 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:33,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:33,399 If you don't want 'pyfus.atlases.atlases_lists' to be distributed and are 2024-12-04T11:31:33,399 already explicitly excluding 'pyfus.atlases.atlases_lists' via 2024-12-04T11:31:33,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:33,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:33,402 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:33,402 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:33,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:33,405 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:33,405 even if it does not contain any `.py` files. 2024-12-04T11:31:33,406 On the other hand, currently there is no concept of package data 2024-12-04T11:31:33,406 directory, all directories are treated like packages. 2024-12-04T11:31:33,407 ******************************************************************************** 2024-12-04T11:31:33,408 !! 2024-12-04T11:31:33,408 check.warn(importable) 2024-12-04T11:31:33,408 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists.__pycache__' is absent from the `packages` configuration. 2024-12-04T11:31:33,409 !! 2024-12-04T11:31:33,410 ******************************************************************************** 2024-12-04T11:31:33,410 ############################ 2024-12-04T11:31:33,411 # Package would be ignored # 2024-12-04T11:31:33,412 ############################ 2024-12-04T11:31:33,414 Python recognizes 'pyfus.atlases.atlases_lists.__pycache__' as an importable package[^1], 2024-12-04T11:31:33,440 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:33,443 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:33,446 package, please make sure that 'pyfus.atlases.atlases_lists.__pycache__' is explicitly added 2024-12-04T11:31:33,449 to the `packages` configuration field. 2024-12-04T11:31:33,485 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:33,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:33,513 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:33,515 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:33,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:33,517 If you don't want 'pyfus.atlases.atlases_lists.__pycache__' to be distributed and are 2024-12-04T11:31:33,517 already explicitly excluding 'pyfus.atlases.atlases_lists.__pycache__' via 2024-12-04T11:31:33,518 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:33,519 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:33,519 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:33,521 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:33,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:33,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:33,526 even if it does not contain any `.py` files. 2024-12-04T11:31:33,526 On the other hand, currently there is no concept of package data 2024-12-04T11:31:33,527 directory, all directories are treated like packages. 2024-12-04T11:31:33,527 ******************************************************************************** 2024-12-04T11:31:33,528 !! 2024-12-04T11:31:33,529 check.warn(importable) 2024-12-04T11:31:33,529 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy' is absent from the `packages` configuration. 2024-12-04T11:31:33,530 !! 2024-12-04T11:31:33,531 ******************************************************************************** 2024-12-04T11:31:33,532 ############################ 2024-12-04T11:31:33,532 # Package would be ignored # 2024-12-04T11:31:33,533 ############################ 2024-12-04T11:31:33,533 Python recognizes 'pyfus.atlases.atlases_npy' as an importable package[^1], 2024-12-04T11:31:33,533 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:34,003 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:35,817 package, please make sure that 'pyfus.atlases.atlases_npy' is explicitly added 2024-12-04T11:31:35,826 to the `packages` configuration field. 2024-12-04T11:31:35,828 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:35,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:35,829 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:35,831 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:35,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:35,834 If you don't want 'pyfus.atlases.atlases_npy' to be distributed and are 2024-12-04T11:31:35,835 already explicitly excluding 'pyfus.atlases.atlases_npy' via 2024-12-04T11:31:35,836 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:35,837 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:35,838 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:35,839 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:35,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:35,844 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:35,845 even if it does not contain any `.py` files. 2024-12-04T11:31:35,846 On the other hand, currently there is no concept of package data 2024-12-04T11:31:35,847 directory, all directories are treated like packages. 2024-12-04T11:31:35,848 ******************************************************************************** 2024-12-04T11:31:35,850 !! 2024-12-04T11:31:35,851 check.warn(importable) 2024-12-04T11:31:35,851 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy.__pycache__' is absent from the `packages` configuration. 2024-12-04T11:31:35,853 !! 2024-12-04T11:31:35,855 ******************************************************************************** 2024-12-04T11:31:35,856 ############################ 2024-12-04T11:31:35,857 # Package would be ignored # 2024-12-04T11:31:35,858 ############################ 2024-12-04T11:31:35,859 Python recognizes 'pyfus.atlases.atlases_npy.__pycache__' as an importable package[^1], 2024-12-04T11:31:35,860 but it is absent from setuptools' `packages` configuration. 2024-12-04T11:31:35,862 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T11:31:35,863 package, please make sure that 'pyfus.atlases.atlases_npy.__pycache__' is explicitly added 2024-12-04T11:31:35,864 to the `packages` configuration field. 2024-12-04T11:31:35,866 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T11:31:35,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T11:31:35,868 instead of `find_packages(...)`/`find:`). 2024-12-04T11:31:35,871 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T11:31:35,873 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T11:31:35,875 If you don't want 'pyfus.atlases.atlases_npy.__pycache__' to be distributed and are 2024-12-04T11:31:35,876 already explicitly excluding 'pyfus.atlases.atlases_npy.__pycache__' via 2024-12-04T11:31:35,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T11:31:35,878 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T11:31:35,879 combination with a more fine grained `package-data` configuration. 2024-12-04T11:31:35,881 You can read more about "package data files" on setuptools documentation page: 2024-12-04T11:31:35,883 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T11:31:35,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T11:31:35,885 even if it does not contain any `.py` files. 2024-12-04T11:31:35,886 On the other hand, currently there is no concept of package data 2024-12-04T11:31:35,886 directory, all directories are treated like packages. 2024-12-04T11:31:35,887 ******************************************************************************** 2024-12-04T11:31:35,888 !! 2024-12-04T11:31:35,889 check.warn(importable) 2024-12-04T11:31:35,889 creating build/lib/pyfus/atlases 2024-12-04T11:31:35,890 copying pyfus/atlases/__init__.py -> build/lib/pyfus/atlases 2024-12-04T11:31:35,890 creating build/lib/pyfus/atlases/__pycache__ 2024-12-04T11:31:35,891 copying pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/__pycache__ 2024-12-04T11:31:35,891 creating build/lib/pyfus/atlases/atlases_lists 2024-12-04T11:31:35,892 copying pyfus/atlases/atlases_lists/__init__.py -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T11:31:35,893 copying pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T11:31:35,893 creating build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T11:31:35,894 copying pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T11:31:35,894 creating build/lib/pyfus/atlases/atlases_npy 2024-12-04T11:31:35,895 copying pyfus/atlases/atlases_npy/__init__.py -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T11:31:35,895 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T11:31:35,896 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T11:31:35,897 creating build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T11:31:35,897 copying pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T11:31:35,898 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-04T11:31:35,899 !! 2024-12-04T11:31:35,900 ******************************************************************************** 2024-12-04T11:31:35,901 Please avoid running ``setup.py`` directly. 2024-12-04T11:31:35,902 Instead, use pypa/build, pypa/installer or other 2024-12-04T11:31:35,902 standards-based tools. 2024-12-04T11:31:35,903 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-04T11:31:35,904 ******************************************************************************** 2024-12-04T11:31:35,905 !! 2024-12-04T11:31:35,906 self.initialize_options() 2024-12-04T11:31:35,925 installing to build/bdist.linux-armv7l/wheel 2024-12-04T11:31:35,926 running install 2024-12-04T11:31:35,983 running install_lib 2024-12-04T11:31:36,009 creating build/bdist.linux-armv7l/wheel 2024-12-04T11:31:36,011 creating build/bdist.linux-armv7l/wheel/pyfus 2024-12-04T11:31:36,013 copying build/lib/pyfus/registration.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,015 copying build/lib/pyfus/correlation_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,017 copying build/lib/pyfus/data_loading.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,020 copying build/lib/pyfus/clustering.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,023 creating build/bdist.linux-armv7l/wheel/pyfus/atlases 2024-12-04T11:31:36,025 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists 2024-12-04T11:31:36,026 copying build/lib/pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T11:31:36,029 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T11:31:36,030 copying build/lib/pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T11:31:36,031 copying build/lib/pyfus/atlases/atlases_lists/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T11:31:36,034 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/__pycache__ 2024-12-04T11:31:36,035 copying build/lib/pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/__pycache__ 2024-12-04T11:31:36,037 copying build/lib/pyfus/atlases/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases 2024-12-04T11:31:36,038 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy 2024-12-04T11:31:36,040 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T11:31:36,117 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T11:31:36,262 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T11:31:36,263 copying build/lib/pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T11:31:36,265 copying build/lib/pyfus/atlases/atlases_npy/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T11:31:36,267 copying build/lib/pyfus/utils.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,269 copying build/lib/pyfus/global_variables.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,271 copying build/lib/pyfus/autoencoders.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,273 copying build/lib/pyfus/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,275 copying build/lib/pyfus/ccf_v3_atlas_generation.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,277 copying build/lib/pyfus/region_averaging_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,280 copying build/lib/pyfus/quantification.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,283 copying build/lib/pyfus/features_extraction.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,285 copying build/lib/pyfus/quality_control.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T11:31:36,287 running install_egg_info 2024-12-04T11:31:36,320 Copying pyfus_lib.egg-info to build/bdist.linux-armv7l/wheel/./pyfus_lib-1.0.0-py3.11.egg-info 2024-12-04T11:31:36,329 running install_scripts 2024-12-04T11:31:36,344 creating build/bdist.linux-armv7l/wheel/pyfus_lib-1.0.0.dist-info/WHEEL 2024-12-04T11:31:36,346 creating '/tmp/pip-wheel-udjedvgn/pyfus_lib-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-04T11:31:36,348 adding 'pyfus/__init__.py' 2024-12-04T11:31:36,350 adding 'pyfus/autoencoders.py' 2024-12-04T11:31:36,352 adding 'pyfus/ccf_v3_atlas_generation.py' 2024-12-04T11:31:36,356 adding 'pyfus/clustering.py' 2024-12-04T11:31:36,358 adding 'pyfus/correlation_analysis.py' 2024-12-04T11:31:36,362 adding 'pyfus/data_loading.py' 2024-12-04T11:31:36,364 adding 'pyfus/features_extraction.py' 2024-12-04T11:31:36,365 adding 'pyfus/global_variables.py' 2024-12-04T11:31:36,367 adding 'pyfus/quality_control.py' 2024-12-04T11:31:36,371 adding 'pyfus/quantification.py' 2024-12-04T11:31:36,373 adding 'pyfus/region_averaging_analysis.py' 2024-12-04T11:31:36,375 adding 'pyfus/registration.py' 2024-12-04T11:31:36,377 adding 'pyfus/utils.py' 2024-12-04T11:31:36,379 adding 'pyfus/atlases/__init__.py' 2024-12-04T11:31:36,381 adding 'pyfus/atlases/__pycache__/__init__.cpython-39.pyc' 2024-12-04T11:31:36,382 adding 'pyfus/atlases/atlases_lists/__init__.py' 2024-12-04T11:31:36,384 adding 'pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt' 2024-12-04T11:31:36,386 adding 'pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc' 2024-12-04T11:31:36,387 adding 'pyfus/atlases/atlases_npy/__init__.py' 2024-12-04T11:31:36,594 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy' 2024-12-04T11:31:36,826 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy' 2024-12-04T11:31:36,858 adding 'pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc' 2024-12-04T11:31:36,860 adding 'pyfus_lib-1.0.0.dist-info/METADATA' 2024-12-04T11:31:36,860 adding 'pyfus_lib-1.0.0.dist-info/WHEEL' 2024-12-04T11:31:36,861 adding 'pyfus_lib-1.0.0.dist-info/top_level.txt' 2024-12-04T11:31:36,862 adding 'pyfus_lib-1.0.0.dist-info/RECORD' 2024-12-04T11:31:36,867 removing build/bdist.linux-armv7l/wheel 2024-12-04T11:31:36,991 Building wheel for pyfus-lib (setup.py): finished with status 'done' 2024-12-04T11:31:36,996 Created wheel for pyfus-lib: filename=pyfus_lib-1.0.0-py3-none-any.whl size=280806 sha256=c9a5bf28f231c19a52c8c5c14154175bf79ea07b0a8fec22d4940ed3353d4ecc 2024-12-04T11:31:36,998 Stored in directory: /tmp/pip-ephem-wheel-cache-tymsdoqm/wheels/4c/22/b6/c80b310d172ed1d3f2b4dea0b2254873f086ae667badc13a6e 2024-12-04T11:31:37,009 Successfully built pyfus-lib 2024-12-04T11:31:37,022 Removed build tracker: '/tmp/pip-build-tracker-nnji5k2_'