2024-12-04T12:41:11,234 Created temporary directory: /tmp/pip-build-tracker-r41dcs2g 2024-12-04T12:41:11,235 Initialized build tracking at /tmp/pip-build-tracker-r41dcs2g 2024-12-04T12:41:11,236 Created build tracker: /tmp/pip-build-tracker-r41dcs2g 2024-12-04T12:41:11,237 Entered build tracker: /tmp/pip-build-tracker-r41dcs2g 2024-12-04T12:41:11,237 Created temporary directory: /tmp/pip-wheel-40kffeuz 2024-12-04T12:41:11,241 Created temporary directory: /tmp/pip-ephem-wheel-cache-7j6kbkfq 2024-12-04T12:41:11,285 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-04T12:41:11,287 2 location(s) to search for versions of pyfus-lib: 2024-12-04T12:41:11,287 * https://pypi.org/simple/pyfus-lib/ 2024-12-04T12:41:11,287 * https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T12:41:11,288 Fetching project page and analyzing links: https://pypi.org/simple/pyfus-lib/ 2024-12-04T12:41:11,289 Getting page https://pypi.org/simple/pyfus-lib/ 2024-12-04T12:41:11,290 Found index url https://pypi.org/simple/ 2024-12-04T12:41:11,510 Fetched page https://pypi.org/simple/pyfus-lib/ as application/vnd.pypi.simple.v1+json 2024-12-04T12:41:11,514 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/7a/7b/5e426ebb52d19e6fdad724e735bf2dd85f120412c5c38760c70a97019859/pyfus_lib-0.1.4-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T12:41:11,514 Found link https://files.pythonhosted.org/packages/19/75/44e13edf654b1ffdec76dd697030fd65e18f9fe6dbacf7e62933a2380ccc/pyfus_lib-0.1.4.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.4 2024-12-04T12:41:11,515 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/d3/52/a6afb452d218fe18196807c2d648f2317303b3f79895ab3fba2ccf91d665/pyfus_lib-0.1.5-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T12:41:11,516 Found link https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.5 2024-12-04T12:41:11,516 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/25/22/43026bf146e6e45cdaebc51d2b0c055b1fd6ad1a10df5ac4b7eddac04fbc/pyfus_lib-1.0.0-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T12:41:11,517 Found link https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.0 2024-12-04T12:41:11,518 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/3f/e9/8264241b7480bf91f01ed4823f553b099d35dd52ee30fa445e25eb5f0de7/pyfus_lib-1.0.1-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T12:41:11,518 Found link https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.1 2024-12-04T12:41:11,519 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/f4/55/73530ccaa603396a0354cf1e453a1a6ef66e326dd03453a240eb9590dea8/pyfus_lib-1.0.2-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T12:41:11,520 Found link https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.2 2024-12-04T12:41:11,521 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T12:41:11,522 Getting page https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T12:41:11,523 Found index url https://www.piwheels.org/simple/ 2024-12-04T12:41:11,685 Fetched page https://www.piwheels.org/simple/pyfus-lib/ as text/html 2024-12-04T12:41:11,687 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.0-py3-none-any.whl#sha256=c9a5bf28f231c19a52c8c5c14154175bf79ea07b0a8fec22d4940ed3353d4ecc (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T12:41:11,687 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.5-py3-none-any.whl#sha256=ed070f1a51d3fd23c542b61c6a6c2cb863ebf9d11a2f15ebc3ab7c300cf882e7 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T12:41:11,688 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.4-py3-none-any.whl#sha256=2984a83dbf3708f0a6f63c5c7fe47a35885eabbf0fd460372100e23b189c9126 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T12:41:11,689 Skipping link: not a file: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T12:41:11,689 Skipping link: not a file: https://pypi.org/simple/pyfus-lib/ 2024-12-04T12:41:11,709 Given no hashes to check 1 links for project 'pyfus-lib': discarding no candidates 2024-12-04T12:41:11,710 Collecting pyfus-lib==1.0.1 2024-12-04T12:41:11,713 Created temporary directory: /tmp/pip-unpack-nxpsmfzc 2024-12-04T12:41:11,931 Downloading pyfus_lib-1.0.1.tar.gz (258 kB) 2024-12-04T12:41:12,436 Added pyfus-lib==1.0.1 from https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-r41dcs2g' 2024-12-04T12:41:12,438 Running setup.py (path:/tmp/pip-wheel-40kffeuz/pyfus-lib_f14d50e3acd241beba19a2a3a7c1035b/setup.py) egg_info for package pyfus-lib 2024-12-04T12:41:12,439 Created temporary directory: /tmp/pip-pip-egg-info-qcp6fodf 2024-12-04T12:41:12,439 Preparing metadata (setup.py): started 2024-12-04T12:41:12,441 Running command python setup.py egg_info 2024-12-04T12:41:12,994 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T12:41:12,995 warnings.warn(msg) 2024-12-04T12:41:13,523 running egg_info 2024-12-04T12:41:13,551 creating /tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info 2024-12-04T12:41:13,552 writing /tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/PKG-INFO 2024-12-04T12:41:13,555 writing dependency_links to /tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/dependency_links.txt 2024-12-04T12:41:13,557 writing requirements to /tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/requires.txt 2024-12-04T12:41:13,559 writing top-level names to /tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/top_level.txt 2024-12-04T12:41:13,560 writing manifest file '/tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T12:41:13,645 reading manifest file '/tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T12:41:13,647 reading manifest template 'MANIFEST.in' 2024-12-04T12:41:13,657 writing manifest file '/tmp/pip-pip-egg-info-qcp6fodf/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T12:41:13,764 Preparing metadata (setup.py): finished with status 'done' 2024-12-04T12:41:13,768 Source in /tmp/pip-wheel-40kffeuz/pyfus-lib_f14d50e3acd241beba19a2a3a7c1035b has version 1.0.1, which satisfies requirement pyfus-lib==1.0.1 from https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz 2024-12-04T12:41:13,769 Removed pyfus-lib==1.0.1 from https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-r41dcs2g' 2024-12-04T12:41:13,776 Created temporary directory: /tmp/pip-unpack-ssvmbotf 2024-12-04T12:41:13,777 Created temporary directory: /tmp/pip-unpack-vpr5duqp 2024-12-04T12:41:13,777 Building wheels for collected packages: pyfus-lib 2024-12-04T12:41:13,781 Created temporary directory: /tmp/pip-wheel-dczfpd8o 2024-12-04T12:41:13,782 Building wheel for pyfus-lib (setup.py): started 2024-12-04T12:41:13,783 Destination directory: /tmp/pip-wheel-dczfpd8o 2024-12-04T12:41:13,784 Running command python setup.py bdist_wheel 2024-12-04T12:41:14,306 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T12:41:14,306 warnings.warn(msg) 2024-12-04T12:41:14,796 running bdist_wheel 2024-12-04T12:41:14,923 running build 2024-12-04T12:41:14,924 running build_py 2024-12-04T12:41:14,953 creating build/lib/pyfus 2024-12-04T12:41:14,956 copying pyfus/utils.py -> build/lib/pyfus 2024-12-04T12:41:14,959 copying pyfus/region_averaging_analysis.py -> build/lib/pyfus 2024-12-04T12:41:14,961 copying pyfus/correlation_analysis.py -> build/lib/pyfus 2024-12-04T12:41:14,964 copying pyfus/registration.py -> build/lib/pyfus 2024-12-04T12:41:14,966 copying pyfus/clustering.py -> build/lib/pyfus 2024-12-04T12:41:14,969 copying pyfus/data_loading.py -> build/lib/pyfus 2024-12-04T12:41:14,973 copying pyfus/ccf_v3_atlas_generation.py -> build/lib/pyfus 2024-12-04T12:41:14,975 copying pyfus/quantification.py -> build/lib/pyfus 2024-12-04T12:41:14,978 copying pyfus/autoencoders.py -> build/lib/pyfus 2024-12-04T12:41:14,981 copying pyfus/quality_control.py -> build/lib/pyfus 2024-12-04T12:41:14,984 copying pyfus/__init__.py -> build/lib/pyfus 2024-12-04T12:41:14,986 copying pyfus/features_extraction.py -> build/lib/pyfus 2024-12-04T12:41:14,987 copying pyfus/global_variables.py -> build/lib/pyfus 2024-12-04T12:41:14,989 running egg_info 2024-12-04T12:41:15,016 writing pyfus_lib.egg-info/PKG-INFO 2024-12-04T12:41:15,019 writing dependency_links to pyfus_lib.egg-info/dependency_links.txt 2024-12-04T12:41:15,020 writing requirements to pyfus_lib.egg-info/requires.txt 2024-12-04T12:41:15,022 writing top-level names to pyfus_lib.egg-info/top_level.txt 2024-12-04T12:41:15,054 reading manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T12:41:15,057 reading manifest template 'MANIFEST.in' 2024-12-04T12:41:15,067 writing manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T12:41:15,069 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases' is absent from the `packages` configuration. 2024-12-04T12:41:15,070 !! 2024-12-04T12:41:15,071 ******************************************************************************** 2024-12-04T12:41:15,071 ############################ 2024-12-04T12:41:15,072 # Package would be ignored # 2024-12-04T12:41:15,073 ############################ 2024-12-04T12:41:15,073 Python recognizes 'pyfus.atlases' as an importable package[^1], 2024-12-04T12:41:15,074 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,075 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,075 package, please make sure that 'pyfus.atlases' is explicitly added 2024-12-04T12:41:15,076 to the `packages` configuration field. 2024-12-04T12:41:15,077 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,078 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,079 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,081 If you don't want 'pyfus.atlases' to be distributed and are 2024-12-04T12:41:15,082 already explicitly excluding 'pyfus.atlases' via 2024-12-04T12:41:15,082 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,083 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,085 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,086 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,087 even if it does not contain any `.py` files. 2024-12-04T12:41:15,088 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,088 directory, all directories are treated like packages. 2024-12-04T12:41:15,089 ******************************************************************************** 2024-12-04T12:41:15,089 !! 2024-12-04T12:41:15,090 check.warn(importable) 2024-12-04T12:41:15,090 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.__pycache__' is absent from the `packages` configuration. 2024-12-04T12:41:15,091 !! 2024-12-04T12:41:15,092 ******************************************************************************** 2024-12-04T12:41:15,092 ############################ 2024-12-04T12:41:15,093 # Package would be ignored # 2024-12-04T12:41:15,093 ############################ 2024-12-04T12:41:15,093 Python recognizes 'pyfus.atlases.__pycache__' as an importable package[^1], 2024-12-04T12:41:15,094 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,095 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,095 package, please make sure that 'pyfus.atlases.__pycache__' is explicitly added 2024-12-04T12:41:15,095 to the `packages` configuration field. 2024-12-04T12:41:15,097 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,097 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,098 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,099 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,101 If you don't want 'pyfus.atlases.__pycache__' to be distributed and are 2024-12-04T12:41:15,102 already explicitly excluding 'pyfus.atlases.__pycache__' via 2024-12-04T12:41:15,103 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,103 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,104 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,105 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,106 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,108 even if it does not contain any `.py` files. 2024-12-04T12:41:15,109 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,109 directory, all directories are treated like packages. 2024-12-04T12:41:15,110 ******************************************************************************** 2024-12-04T12:41:15,111 !! 2024-12-04T12:41:15,111 check.warn(importable) 2024-12-04T12:41:15,112 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists' is absent from the `packages` configuration. 2024-12-04T12:41:15,113 !! 2024-12-04T12:41:15,114 ******************************************************************************** 2024-12-04T12:41:15,115 ############################ 2024-12-04T12:41:15,115 # Package would be ignored # 2024-12-04T12:41:15,116 ############################ 2024-12-04T12:41:15,117 Python recognizes 'pyfus.atlases.atlases_lists' as an importable package[^1], 2024-12-04T12:41:15,117 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,118 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,119 package, please make sure that 'pyfus.atlases.atlases_lists' is explicitly added 2024-12-04T12:41:15,119 to the `packages` configuration field. 2024-12-04T12:41:15,120 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,121 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,122 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,124 If you don't want 'pyfus.atlases.atlases_lists' to be distributed and are 2024-12-04T12:41:15,124 already explicitly excluding 'pyfus.atlases.atlases_lists' via 2024-12-04T12:41:15,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,125 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,126 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,126 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,127 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,129 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,129 even if it does not contain any `.py` files. 2024-12-04T12:41:15,130 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,130 directory, all directories are treated like packages. 2024-12-04T12:41:15,131 ******************************************************************************** 2024-12-04T12:41:15,132 !! 2024-12-04T12:41:15,132 check.warn(importable) 2024-12-04T12:41:15,133 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists.__pycache__' is absent from the `packages` configuration. 2024-12-04T12:41:15,133 !! 2024-12-04T12:41:15,134 ******************************************************************************** 2024-12-04T12:41:15,135 ############################ 2024-12-04T12:41:15,140 # Package would be ignored # 2024-12-04T12:41:15,149 ############################ 2024-12-04T12:41:15,165 Python recognizes 'pyfus.atlases.atlases_lists.__pycache__' as an importable package[^1], 2024-12-04T12:41:15,194 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,216 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,219 package, please make sure that 'pyfus.atlases.atlases_lists.__pycache__' is explicitly added 2024-12-04T12:41:15,224 to the `packages` configuration field. 2024-12-04T12:41:15,234 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,234 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,235 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,236 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,237 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,238 If you don't want 'pyfus.atlases.atlases_lists.__pycache__' to be distributed and are 2024-12-04T12:41:15,239 already explicitly excluding 'pyfus.atlases.atlases_lists.__pycache__' via 2024-12-04T12:41:15,240 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,242 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,243 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,244 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,245 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,245 even if it does not contain any `.py` files. 2024-12-04T12:41:15,246 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,246 directory, all directories are treated like packages. 2024-12-04T12:41:15,247 ******************************************************************************** 2024-12-04T12:41:15,248 !! 2024-12-04T12:41:15,248 check.warn(importable) 2024-12-04T12:41:15,249 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy' is absent from the `packages` configuration. 2024-12-04T12:41:15,249 !! 2024-12-04T12:41:15,250 ******************************************************************************** 2024-12-04T12:41:15,251 ############################ 2024-12-04T12:41:15,251 # Package would be ignored # 2024-12-04T12:41:15,252 ############################ 2024-12-04T12:41:15,252 Python recognizes 'pyfus.atlases.atlases_npy' as an importable package[^1], 2024-12-04T12:41:15,253 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,254 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,255 package, please make sure that 'pyfus.atlases.atlases_npy' is explicitly added 2024-12-04T12:41:15,255 to the `packages` configuration field. 2024-12-04T12:41:15,257 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,258 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,259 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,269 If you don't want 'pyfus.atlases.atlases_npy' to be distributed and are 2024-12-04T12:41:15,271 already explicitly excluding 'pyfus.atlases.atlases_npy' via 2024-12-04T12:41:15,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,280 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,312 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,313 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,314 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,314 even if it does not contain any `.py` files. 2024-12-04T12:41:15,315 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,316 directory, all directories are treated like packages. 2024-12-04T12:41:15,316 ******************************************************************************** 2024-12-04T12:41:15,317 !! 2024-12-04T12:41:15,318 check.warn(importable) 2024-12-04T12:41:15,318 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy.__pycache__' is absent from the `packages` configuration. 2024-12-04T12:41:15,319 !! 2024-12-04T12:41:15,321 ******************************************************************************** 2024-12-04T12:41:15,322 ############################ 2024-12-04T12:41:15,322 # Package would be ignored # 2024-12-04T12:41:15,322 ############################ 2024-12-04T12:41:15,323 Python recognizes 'pyfus.atlases.atlases_npy.__pycache__' as an importable package[^1], 2024-12-04T12:41:15,323 but it is absent from setuptools' `packages` configuration. 2024-12-04T12:41:15,324 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T12:41:15,325 package, please make sure that 'pyfus.atlases.atlases_npy.__pycache__' is explicitly added 2024-12-04T12:41:15,325 to the `packages` configuration field. 2024-12-04T12:41:15,326 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T12:41:15,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T12:41:15,327 instead of `find_packages(...)`/`find:`). 2024-12-04T12:41:15,328 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T12:41:15,329 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T12:41:15,330 If you don't want 'pyfus.atlases.atlases_npy.__pycache__' to be distributed and are 2024-12-04T12:41:15,330 already explicitly excluding 'pyfus.atlases.atlases_npy.__pycache__' via 2024-12-04T12:41:15,331 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T12:41:15,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T12:41:15,332 combination with a more fine grained `package-data` configuration. 2024-12-04T12:41:15,333 You can read more about "package data files" on setuptools documentation page: 2024-12-04T12:41:15,334 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T12:41:15,335 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T12:41:15,336 even if it does not contain any `.py` files. 2024-12-04T12:41:15,337 On the other hand, currently there is no concept of package data 2024-12-04T12:41:15,337 directory, all directories are treated like packages. 2024-12-04T12:41:15,338 ******************************************************************************** 2024-12-04T12:41:15,339 !! 2024-12-04T12:41:15,339 check.warn(importable) 2024-12-04T12:41:15,340 creating build/lib/pyfus/atlases 2024-12-04T12:41:15,341 copying pyfus/atlases/__init__.py -> build/lib/pyfus/atlases 2024-12-04T12:41:15,341 creating build/lib/pyfus/atlases/__pycache__ 2024-12-04T12:41:15,342 copying pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/__pycache__ 2024-12-04T12:41:15,342 creating build/lib/pyfus/atlases/atlases_lists 2024-12-04T12:41:15,343 copying pyfus/atlases/atlases_lists/__init__.py -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T12:41:15,343 copying pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T12:41:15,344 creating build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T12:41:15,345 copying pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T12:41:15,345 creating build/lib/pyfus/atlases/atlases_npy 2024-12-04T12:41:15,346 copying pyfus/atlases/atlases_npy/__init__.py -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T12:41:15,346 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T12:41:15,347 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T12:41:15,347 creating build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T12:41:15,348 copying pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T12:41:15,353 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-04T12:41:15,354 !! 2024-12-04T12:41:15,355 ******************************************************************************** 2024-12-04T12:41:15,355 Please avoid running ``setup.py`` directly. 2024-12-04T12:41:15,356 Instead, use pypa/build, pypa/installer or other 2024-12-04T12:41:15,356 standards-based tools. 2024-12-04T12:41:15,359 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-04T12:41:15,360 ******************************************************************************** 2024-12-04T12:41:15,361 !! 2024-12-04T12:41:15,361 self.initialize_options() 2024-12-04T12:41:15,381 installing to build/bdist.linux-armv7l/wheel 2024-12-04T12:41:15,382 running install 2024-12-04T12:41:15,406 running install_lib 2024-12-04T12:41:15,432 creating build/bdist.linux-armv7l/wheel 2024-12-04T12:41:15,434 creating build/bdist.linux-armv7l/wheel/pyfus 2024-12-04T12:41:15,435 copying build/lib/pyfus/utils.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,438 copying build/lib/pyfus/region_averaging_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,441 creating build/bdist.linux-armv7l/wheel/pyfus/atlases 2024-12-04T12:41:15,443 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/__pycache__ 2024-12-04T12:41:15,444 copying build/lib/pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/__pycache__ 2024-12-04T12:41:15,447 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy 2024-12-04T12:41:15,448 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T12:41:15,449 copying build/lib/pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T12:41:15,451 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T12:41:15,589 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T12:41:15,660 copying build/lib/pyfus/atlases/atlases_npy/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T12:41:15,662 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists 2024-12-04T12:41:15,664 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T12:41:15,666 copying build/lib/pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T12:41:15,668 copying build/lib/pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T12:41:15,670 copying build/lib/pyfus/atlases/atlases_lists/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T12:41:15,672 copying build/lib/pyfus/atlases/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases 2024-12-04T12:41:15,674 copying build/lib/pyfus/correlation_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,676 copying build/lib/pyfus/registration.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,679 copying build/lib/pyfus/clustering.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,682 copying build/lib/pyfus/data_loading.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,685 copying build/lib/pyfus/ccf_v3_atlas_generation.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,688 copying build/lib/pyfus/quantification.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,691 copying build/lib/pyfus/autoencoders.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,694 copying build/lib/pyfus/quality_control.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,697 copying build/lib/pyfus/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,699 copying build/lib/pyfus/features_extraction.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,702 copying build/lib/pyfus/global_variables.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T12:41:15,703 running install_egg_info 2024-12-04T12:41:15,738 Copying pyfus_lib.egg-info to build/bdist.linux-armv7l/wheel/./pyfus_lib-1.0.1-py3.11.egg-info 2024-12-04T12:41:15,747 running install_scripts 2024-12-04T12:41:15,762 creating build/bdist.linux-armv7l/wheel/pyfus_lib-1.0.1.dist-info/WHEEL 2024-12-04T12:41:15,765 creating '/tmp/pip-wheel-dczfpd8o/pyfus_lib-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-04T12:41:15,767 adding 'pyfus/__init__.py' 2024-12-04T12:41:15,770 adding 'pyfus/autoencoders.py' 2024-12-04T12:41:15,772 adding 'pyfus/ccf_v3_atlas_generation.py' 2024-12-04T12:41:15,777 adding 'pyfus/clustering.py' 2024-12-04T12:41:15,779 adding 'pyfus/correlation_analysis.py' 2024-12-04T12:41:15,784 adding 'pyfus/data_loading.py' 2024-12-04T12:41:15,786 adding 'pyfus/features_extraction.py' 2024-12-04T12:41:15,788 adding 'pyfus/global_variables.py' 2024-12-04T12:41:15,790 adding 'pyfus/quality_control.py' 2024-12-04T12:41:15,794 adding 'pyfus/quantification.py' 2024-12-04T12:41:15,797 adding 'pyfus/region_averaging_analysis.py' 2024-12-04T12:41:15,799 adding 'pyfus/registration.py' 2024-12-04T12:41:15,803 adding 'pyfus/utils.py' 2024-12-04T12:41:15,805 adding 'pyfus/atlases/__init__.py' 2024-12-04T12:41:15,807 adding 'pyfus/atlases/__pycache__/__init__.cpython-39.pyc' 2024-12-04T12:41:15,809 adding 'pyfus/atlases/atlases_lists/__init__.py' 2024-12-04T12:41:15,811 adding 'pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt' 2024-12-04T12:41:15,813 adding 'pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc' 2024-12-04T12:41:15,815 adding 'pyfus/atlases/atlases_npy/__init__.py' 2024-12-04T12:41:16,024 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy' 2024-12-04T12:41:16,259 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy' 2024-12-04T12:41:16,290 adding 'pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc' 2024-12-04T12:41:16,293 adding 'pyfus_lib-1.0.1.dist-info/METADATA' 2024-12-04T12:41:16,294 adding 'pyfus_lib-1.0.1.dist-info/WHEEL' 2024-12-04T12:41:16,295 adding 'pyfus_lib-1.0.1.dist-info/top_level.txt' 2024-12-04T12:41:16,297 adding 'pyfus_lib-1.0.1.dist-info/RECORD' 2024-12-04T12:41:16,301 removing build/bdist.linux-armv7l/wheel 2024-12-04T12:41:16,425 Building wheel for pyfus-lib (setup.py): finished with status 'done' 2024-12-04T12:41:16,431 Created wheel for pyfus-lib: filename=pyfus_lib-1.0.1-py3-none-any.whl size=280805 sha256=7415bd6384778e4b778c48b52c64998c02e7f6c37219d9a257bf39ea133da9f8 2024-12-04T12:41:16,432 Stored in directory: /tmp/pip-ephem-wheel-cache-7j6kbkfq/wheels/a9/67/62/1310965c5d3ac10a2ad45c457a35501864e8981645ddf0074d 2024-12-04T12:41:16,442 Successfully built pyfus-lib 2024-12-04T12:41:16,455 Removed build tracker: '/tmp/pip-build-tracker-r41dcs2g'