2024-12-04T13:41:07,723 Created temporary directory: /tmp/pip-build-tracker-ee9lll7y 2024-12-04T13:41:07,725 Initialized build tracking at /tmp/pip-build-tracker-ee9lll7y 2024-12-04T13:41:07,725 Created build tracker: /tmp/pip-build-tracker-ee9lll7y 2024-12-04T13:41:07,726 Entered build tracker: /tmp/pip-build-tracker-ee9lll7y 2024-12-04T13:41:07,726 Created temporary directory: /tmp/pip-wheel-fq_4nnxf 2024-12-04T13:41:07,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-6mg5waye 2024-12-04T13:41:07,774 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-04T13:41:07,776 2 location(s) to search for versions of pyfus-lib: 2024-12-04T13:41:07,776 * https://pypi.org/simple/pyfus-lib/ 2024-12-04T13:41:07,776 * https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T13:41:07,777 Fetching project page and analyzing links: https://pypi.org/simple/pyfus-lib/ 2024-12-04T13:41:07,778 Getting page https://pypi.org/simple/pyfus-lib/ 2024-12-04T13:41:07,780 Found index url https://pypi.org/simple/ 2024-12-04T13:41:07,924 Fetched page https://pypi.org/simple/pyfus-lib/ as application/vnd.pypi.simple.v1+json 2024-12-04T13:41:07,928 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/7a/7b/5e426ebb52d19e6fdad724e735bf2dd85f120412c5c38760c70a97019859/pyfus_lib-0.1.4-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T13:41:07,928 Found link https://files.pythonhosted.org/packages/19/75/44e13edf654b1ffdec76dd697030fd65e18f9fe6dbacf7e62933a2380ccc/pyfus_lib-0.1.4.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.4 2024-12-04T13:41:07,929 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/d3/52/a6afb452d218fe18196807c2d648f2317303b3f79895ab3fba2ccf91d665/pyfus_lib-0.1.5-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T13:41:07,930 Found link https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.5 2024-12-04T13:41:07,930 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/25/22/43026bf146e6e45cdaebc51d2b0c055b1fd6ad1a10df5ac4b7eddac04fbc/pyfus_lib-1.0.0-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T13:41:07,931 Found link https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.0 2024-12-04T13:41:07,931 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/3f/e9/8264241b7480bf91f01ed4823f553b099d35dd52ee30fa445e25eb5f0de7/pyfus_lib-1.0.1-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T13:41:07,932 Found link https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.1 2024-12-04T13:41:07,933 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/f4/55/73530ccaa603396a0354cf1e453a1a6ef66e326dd03453a240eb9590dea8/pyfus_lib-1.0.2-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-04T13:41:07,933 Found link https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.2 2024-12-04T13:41:07,934 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T13:41:07,935 Getting page https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T13:41:07,936 Found index url https://www.piwheels.org/simple/ 2024-12-04T13:41:08,095 Fetched page https://www.piwheels.org/simple/pyfus-lib/ as text/html 2024-12-04T13:41:08,097 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.1-py3-none-any.whl#sha256=7415bd6384778e4b778c48b52c64998c02e7f6c37219d9a257bf39ea133da9f8 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T13:41:08,098 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.0-py3-none-any.whl#sha256=c9a5bf28f231c19a52c8c5c14154175bf79ea07b0a8fec22d4940ed3353d4ecc (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T13:41:08,099 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.5-py3-none-any.whl#sha256=ed070f1a51d3fd23c542b61c6a6c2cb863ebf9d11a2f15ebc3ab7c300cf882e7 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T13:41:08,099 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.4-py3-none-any.whl#sha256=2984a83dbf3708f0a6f63c5c7fe47a35885eabbf0fd460372100e23b189c9126 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-04T13:41:08,100 Skipping link: not a file: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-04T13:41:08,100 Skipping link: not a file: https://pypi.org/simple/pyfus-lib/ 2024-12-04T13:41:08,119 Given no hashes to check 1 links for project 'pyfus-lib': discarding no candidates 2024-12-04T13:41:08,121 Collecting pyfus-lib==1.0.2 2024-12-04T13:41:08,123 Created temporary directory: /tmp/pip-unpack-8vidvtzj 2024-12-04T13:41:08,342 Downloading pyfus_lib-1.0.2.tar.gz (258 kB) 2024-12-04T13:41:08,872 Added pyfus-lib==1.0.2 from https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-ee9lll7y' 2024-12-04T13:41:08,874 Running setup.py (path:/tmp/pip-wheel-fq_4nnxf/pyfus-lib_36fad2fc28684c45a1b1a4e522873f8a/setup.py) egg_info for package pyfus-lib 2024-12-04T13:41:08,875 Created temporary directory: /tmp/pip-pip-egg-info-t9wjyqt4 2024-12-04T13:41:08,875 Preparing metadata (setup.py): started 2024-12-04T13:41:08,877 Running command python setup.py egg_info 2024-12-04T13:41:09,493 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T13:41:09,493 warnings.warn(msg) 2024-12-04T13:41:10,104 running egg_info 2024-12-04T13:41:10,148 creating /tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info 2024-12-04T13:41:10,151 writing /tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/PKG-INFO 2024-12-04T13:41:10,158 writing dependency_links to /tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/dependency_links.txt 2024-12-04T13:41:10,166 writing requirements to /tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/requires.txt 2024-12-04T13:41:10,170 writing top-level names to /tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/top_level.txt 2024-12-04T13:41:10,175 writing manifest file '/tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T13:41:10,290 reading manifest file '/tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T13:41:10,292 reading manifest template 'MANIFEST.in' 2024-12-04T13:41:10,302 writing manifest file '/tmp/pip-pip-egg-info-t9wjyqt4/pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T13:41:10,409 Preparing metadata (setup.py): finished with status 'done' 2024-12-04T13:41:10,413 Source in /tmp/pip-wheel-fq_4nnxf/pyfus-lib_36fad2fc28684c45a1b1a4e522873f8a has version 1.0.2, which satisfies requirement pyfus-lib==1.0.2 from https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz 2024-12-04T13:41:10,414 Removed pyfus-lib==1.0.2 from https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-ee9lll7y' 2024-12-04T13:41:10,422 Created temporary directory: /tmp/pip-unpack-1uac63jk 2024-12-04T13:41:10,423 Created temporary directory: /tmp/pip-unpack-nerek0t_ 2024-12-04T13:41:10,423 Building wheels for collected packages: pyfus-lib 2024-12-04T13:41:10,428 Created temporary directory: /tmp/pip-wheel-k7fbpos6 2024-12-04T13:41:10,428 Building wheel for pyfus-lib (setup.py): started 2024-12-04T13:41:10,430 Destination directory: /tmp/pip-wheel-k7fbpos6 2024-12-04T13:41:10,430 Running command python setup.py bdist_wheel 2024-12-04T13:41:10,961 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-04T13:41:10,962 warnings.warn(msg) 2024-12-04T13:41:11,463 running bdist_wheel 2024-12-04T13:41:11,596 running build 2024-12-04T13:41:11,596 running build_py 2024-12-04T13:41:11,626 creating build/lib/pyfus 2024-12-04T13:41:11,628 copying pyfus/features_extraction.py -> build/lib/pyfus 2024-12-04T13:41:11,630 copying pyfus/correlation_analysis.py -> build/lib/pyfus 2024-12-04T13:41:11,633 copying pyfus/clustering.py -> build/lib/pyfus 2024-12-04T13:41:11,636 copying pyfus/ccf_v3_atlas_generation.py -> build/lib/pyfus 2024-12-04T13:41:11,638 copying pyfus/global_variables.py -> build/lib/pyfus 2024-12-04T13:41:11,640 copying pyfus/quantification.py -> build/lib/pyfus 2024-12-04T13:41:11,642 copying pyfus/data_loading.py -> build/lib/pyfus 2024-12-04T13:41:11,645 copying pyfus/autoencoders.py -> build/lib/pyfus 2024-12-04T13:41:11,647 copying pyfus/utils.py -> build/lib/pyfus 2024-12-04T13:41:11,650 copying pyfus/quality_control.py -> build/lib/pyfus 2024-12-04T13:41:11,652 copying pyfus/__init__.py -> build/lib/pyfus 2024-12-04T13:41:11,654 copying pyfus/registration.py -> build/lib/pyfus 2024-12-04T13:41:11,656 copying pyfus/region_averaging_analysis.py -> build/lib/pyfus 2024-12-04T13:41:11,658 running egg_info 2024-12-04T13:41:11,686 writing pyfus_lib.egg-info/PKG-INFO 2024-12-04T13:41:11,689 writing dependency_links to pyfus_lib.egg-info/dependency_links.txt 2024-12-04T13:41:11,691 writing requirements to pyfus_lib.egg-info/requires.txt 2024-12-04T13:41:11,692 writing top-level names to pyfus_lib.egg-info/top_level.txt 2024-12-04T13:41:11,725 reading manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T13:41:11,728 reading manifest template 'MANIFEST.in' 2024-12-04T13:41:11,738 writing manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-04T13:41:11,740 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases' is absent from the `packages` configuration. 2024-12-04T13:41:11,740 !! 2024-12-04T13:41:11,742 ******************************************************************************** 2024-12-04T13:41:11,742 ############################ 2024-12-04T13:41:11,743 # Package would be ignored # 2024-12-04T13:41:11,743 ############################ 2024-12-04T13:41:11,744 Python recognizes 'pyfus.atlases' as an importable package[^1], 2024-12-04T13:41:11,745 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:11,746 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:11,746 package, please make sure that 'pyfus.atlases' is explicitly added 2024-12-04T13:41:11,746 to the `packages` configuration field. 2024-12-04T13:41:11,747 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:11,748 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:11,749 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:11,750 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:11,751 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:11,752 If you don't want 'pyfus.atlases' to be distributed and are 2024-12-04T13:41:11,752 already explicitly excluding 'pyfus.atlases' via 2024-12-04T13:41:11,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:11,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:11,754 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:11,755 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:11,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:11,757 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:11,758 even if it does not contain any `.py` files. 2024-12-04T13:41:11,758 On the other hand, currently there is no concept of package data 2024-12-04T13:41:11,759 directory, all directories are treated like packages. 2024-12-04T13:41:11,759 ******************************************************************************** 2024-12-04T13:41:11,760 !! 2024-12-04T13:41:11,760 check.warn(importable) 2024-12-04T13:41:11,761 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.__pycache__' is absent from the `packages` configuration. 2024-12-04T13:41:11,761 !! 2024-12-04T13:41:11,762 ******************************************************************************** 2024-12-04T13:41:11,763 ############################ 2024-12-04T13:41:11,763 # Package would be ignored # 2024-12-04T13:41:11,764 ############################ 2024-12-04T13:41:11,764 Python recognizes 'pyfus.atlases.__pycache__' as an importable package[^1], 2024-12-04T13:41:11,765 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:11,766 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:11,766 package, please make sure that 'pyfus.atlases.__pycache__' is explicitly added 2024-12-04T13:41:11,766 to the `packages` configuration field. 2024-12-04T13:41:11,767 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:11,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:11,768 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:11,769 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:11,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:11,772 If you don't want 'pyfus.atlases.__pycache__' to be distributed and are 2024-12-04T13:41:11,772 already explicitly excluding 'pyfus.atlases.__pycache__' via 2024-12-04T13:41:11,773 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:11,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:11,774 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:11,775 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:11,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:11,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:11,779 even if it does not contain any `.py` files. 2024-12-04T13:41:11,779 On the other hand, currently there is no concept of package data 2024-12-04T13:41:11,780 directory, all directories are treated like packages. 2024-12-04T13:41:11,780 ******************************************************************************** 2024-12-04T13:41:11,781 !! 2024-12-04T13:41:11,782 check.warn(importable) 2024-12-04T13:41:11,783 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists' is absent from the `packages` configuration. 2024-12-04T13:41:11,783 !! 2024-12-04T13:41:11,784 ******************************************************************************** 2024-12-04T13:41:11,785 ############################ 2024-12-04T13:41:11,786 # Package would be ignored # 2024-12-04T13:41:11,786 ############################ 2024-12-04T13:41:11,787 Python recognizes 'pyfus.atlases.atlases_lists' as an importable package[^1], 2024-12-04T13:41:11,787 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:11,788 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:11,788 package, please make sure that 'pyfus.atlases.atlases_lists' is explicitly added 2024-12-04T13:41:11,789 to the `packages` configuration field. 2024-12-04T13:41:11,790 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:11,790 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:11,791 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:11,791 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:11,792 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:11,793 If you don't want 'pyfus.atlases.atlases_lists' to be distributed and are 2024-12-04T13:41:11,794 already explicitly excluding 'pyfus.atlases.atlases_lists' via 2024-12-04T13:41:11,794 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:11,795 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:11,795 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:11,797 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:11,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:11,800 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:11,801 even if it does not contain any `.py` files. 2024-12-04T13:41:11,801 On the other hand, currently there is no concept of package data 2024-12-04T13:41:11,802 directory, all directories are treated like packages. 2024-12-04T13:41:11,802 ******************************************************************************** 2024-12-04T13:41:11,804 !! 2024-12-04T13:41:11,804 check.warn(importable) 2024-12-04T13:41:11,805 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists.__pycache__' is absent from the `packages` configuration. 2024-12-04T13:41:11,806 !! 2024-12-04T13:41:11,807 ******************************************************************************** 2024-12-04T13:41:11,807 ############################ 2024-12-04T13:41:11,808 # Package would be ignored # 2024-12-04T13:41:11,808 ############################ 2024-12-04T13:41:11,809 Python recognizes 'pyfus.atlases.atlases_lists.__pycache__' as an importable package[^1], 2024-12-04T13:41:11,810 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:11,811 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:11,811 package, please make sure that 'pyfus.atlases.atlases_lists.__pycache__' is explicitly added 2024-12-04T13:41:11,812 to the `packages` configuration field. 2024-12-04T13:41:11,813 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:11,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:11,814 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:11,816 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:11,826 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:11,883 If you don't want 'pyfus.atlases.atlases_lists.__pycache__' to be distributed and are 2024-12-04T13:41:11,888 already explicitly excluding 'pyfus.atlases.atlases_lists.__pycache__' via 2024-12-04T13:41:11,901 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:11,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:11,923 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:11,924 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:11,925 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:11,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:11,927 even if it does not contain any `.py` files. 2024-12-04T13:41:11,927 On the other hand, currently there is no concept of package data 2024-12-04T13:41:11,928 directory, all directories are treated like packages. 2024-12-04T13:41:11,928 ******************************************************************************** 2024-12-04T13:41:11,934 !! 2024-12-04T13:41:11,935 check.warn(importable) 2024-12-04T13:41:11,935 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy' is absent from the `packages` configuration. 2024-12-04T13:41:11,936 !! 2024-12-04T13:41:11,937 ******************************************************************************** 2024-12-04T13:41:11,938 ############################ 2024-12-04T13:41:11,938 # Package would be ignored # 2024-12-04T13:41:11,939 ############################ 2024-12-04T13:41:11,939 Python recognizes 'pyfus.atlases.atlases_npy' as an importable package[^1], 2024-12-04T13:41:11,940 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:11,941 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:11,942 package, please make sure that 'pyfus.atlases.atlases_npy' is explicitly added 2024-12-04T13:41:11,942 to the `packages` configuration field. 2024-12-04T13:41:11,943 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:11,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:11,945 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:11,946 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:11,947 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:11,948 If you don't want 'pyfus.atlases.atlases_npy' to be distributed and are 2024-12-04T13:41:11,949 already explicitly excluding 'pyfus.atlases.atlases_npy' via 2024-12-04T13:41:11,949 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:11,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:11,962 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:11,998 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:11,999 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:12,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:12,001 even if it does not contain any `.py` files. 2024-12-04T13:41:12,002 On the other hand, currently there is no concept of package data 2024-12-04T13:41:12,003 directory, all directories are treated like packages. 2024-12-04T13:41:12,003 ******************************************************************************** 2024-12-04T13:41:12,005 !! 2024-12-04T13:41:12,005 check.warn(importable) 2024-12-04T13:41:12,006 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy.__pycache__' is absent from the `packages` configuration. 2024-12-04T13:41:12,007 !! 2024-12-04T13:41:12,008 ******************************************************************************** 2024-12-04T13:41:12,009 ############################ 2024-12-04T13:41:12,009 # Package would be ignored # 2024-12-04T13:41:12,009 ############################ 2024-12-04T13:41:12,010 Python recognizes 'pyfus.atlases.atlases_npy.__pycache__' as an importable package[^1], 2024-12-04T13:41:12,010 but it is absent from setuptools' `packages` configuration. 2024-12-04T13:41:12,011 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T13:41:12,012 package, please make sure that 'pyfus.atlases.atlases_npy.__pycache__' is explicitly added 2024-12-04T13:41:12,012 to the `packages` configuration field. 2024-12-04T13:41:12,013 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T13:41:12,014 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T13:41:12,014 instead of `find_packages(...)`/`find:`). 2024-12-04T13:41:12,015 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T13:41:12,016 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T13:41:12,017 If you don't want 'pyfus.atlases.atlases_npy.__pycache__' to be distributed and are 2024-12-04T13:41:12,018 already explicitly excluding 'pyfus.atlases.atlases_npy.__pycache__' via 2024-12-04T13:41:12,018 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T13:41:12,019 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T13:41:12,019 combination with a more fine grained `package-data` configuration. 2024-12-04T13:41:12,021 You can read more about "package data files" on setuptools documentation page: 2024-12-04T13:41:12,022 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T13:41:12,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T13:41:12,024 even if it does not contain any `.py` files. 2024-12-04T13:41:12,025 On the other hand, currently there is no concept of package data 2024-12-04T13:41:12,025 directory, all directories are treated like packages. 2024-12-04T13:41:12,026 ******************************************************************************** 2024-12-04T13:41:12,027 !! 2024-12-04T13:41:12,027 check.warn(importable) 2024-12-04T13:41:12,028 creating build/lib/pyfus/atlases 2024-12-04T13:41:12,028 copying pyfus/atlases/__init__.py -> build/lib/pyfus/atlases 2024-12-04T13:41:12,029 creating build/lib/pyfus/atlases/__pycache__ 2024-12-04T13:41:12,029 copying pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/__pycache__ 2024-12-04T13:41:12,030 creating build/lib/pyfus/atlases/atlases_lists 2024-12-04T13:41:12,030 copying pyfus/atlases/atlases_lists/__init__.py -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T13:41:12,031 copying pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/lib/pyfus/atlases/atlases_lists 2024-12-04T13:41:12,032 creating build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T13:41:12,032 copying pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T13:41:12,033 creating build/lib/pyfus/atlases/atlases_npy 2024-12-04T13:41:12,033 copying pyfus/atlases/atlases_npy/__init__.py -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T13:41:12,034 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T13:41:12,034 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-04T13:41:12,035 creating build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T13:41:12,035 copying pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T13:41:12,046 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-04T13:41:12,046 !! 2024-12-04T13:41:12,047 ******************************************************************************** 2024-12-04T13:41:12,048 Please avoid running ``setup.py`` directly. 2024-12-04T13:41:12,048 Instead, use pypa/build, pypa/installer or other 2024-12-04T13:41:12,049 standards-based tools. 2024-12-04T13:41:12,049 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-04T13:41:12,050 ******************************************************************************** 2024-12-04T13:41:12,051 !! 2024-12-04T13:41:12,051 self.initialize_options() 2024-12-04T13:41:12,074 installing to build/bdist.linux-armv7l/wheel 2024-12-04T13:41:12,074 running install 2024-12-04T13:41:12,102 running install_lib 2024-12-04T13:41:12,129 creating build/bdist.linux-armv7l/wheel 2024-12-04T13:41:12,131 creating build/bdist.linux-armv7l/wheel/pyfus 2024-12-04T13:41:12,132 copying build/lib/pyfus/features_extraction.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,135 copying build/lib/pyfus/correlation_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,137 copying build/lib/pyfus/clustering.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,140 copying build/lib/pyfus/ccf_v3_atlas_generation.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,142 copying build/lib/pyfus/global_variables.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,144 copying build/lib/pyfus/quantification.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,146 copying build/lib/pyfus/data_loading.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,149 copying build/lib/pyfus/autoencoders.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,152 copying build/lib/pyfus/utils.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,155 copying build/lib/pyfus/quality_control.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,158 copying build/lib/pyfus/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,160 creating build/bdist.linux-armv7l/wheel/pyfus/atlases 2024-12-04T13:41:12,162 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/__pycache__ 2024-12-04T13:41:12,163 copying build/lib/pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/__pycache__ 2024-12-04T13:41:12,165 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy 2024-12-04T13:41:12,167 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T13:41:12,168 copying build/lib/pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy/__pycache__ 2024-12-04T13:41:12,170 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T13:41:12,316 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T13:41:12,392 copying build/lib/pyfus/atlases/atlases_npy/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-04T13:41:12,395 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists 2024-12-04T13:41:12,397 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T13:41:12,399 copying build/lib/pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists/__pycache__ 2024-12-04T13:41:12,401 copying build/lib/pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T13:41:12,403 copying build/lib/pyfus/atlases/atlases_lists/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-04T13:41:12,405 copying build/lib/pyfus/atlases/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases 2024-12-04T13:41:12,407 copying build/lib/pyfus/registration.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,410 copying build/lib/pyfus/region_averaging_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-04T13:41:12,412 running install_egg_info 2024-12-04T13:41:12,446 Copying pyfus_lib.egg-info to build/bdist.linux-armv7l/wheel/./pyfus_lib-1.0.2-py3.11.egg-info 2024-12-04T13:41:12,456 running install_scripts 2024-12-04T13:41:12,471 creating build/bdist.linux-armv7l/wheel/pyfus_lib-1.0.2.dist-info/WHEEL 2024-12-04T13:41:12,474 creating '/tmp/pip-wheel-k7fbpos6/pyfus_lib-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-04T13:41:12,477 adding 'pyfus/__init__.py' 2024-12-04T13:41:12,479 adding 'pyfus/autoencoders.py' 2024-12-04T13:41:12,481 adding 'pyfus/ccf_v3_atlas_generation.py' 2024-12-04T13:41:12,486 adding 'pyfus/clustering.py' 2024-12-04T13:41:12,488 adding 'pyfus/correlation_analysis.py' 2024-12-04T13:41:12,493 adding 'pyfus/data_loading.py' 2024-12-04T13:41:12,495 adding 'pyfus/features_extraction.py' 2024-12-04T13:41:12,496 adding 'pyfus/global_variables.py' 2024-12-04T13:41:12,499 adding 'pyfus/quality_control.py' 2024-12-04T13:41:12,503 adding 'pyfus/quantification.py' 2024-12-04T13:41:12,505 adding 'pyfus/region_averaging_analysis.py' 2024-12-04T13:41:12,508 adding 'pyfus/registration.py' 2024-12-04T13:41:12,511 adding 'pyfus/utils.py' 2024-12-04T13:41:12,513 adding 'pyfus/atlases/__init__.py' 2024-12-04T13:41:12,515 adding 'pyfus/atlases/__pycache__/__init__.cpython-39.pyc' 2024-12-04T13:41:12,517 adding 'pyfus/atlases/atlases_lists/__init__.py' 2024-12-04T13:41:12,519 adding 'pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt' 2024-12-04T13:41:12,522 adding 'pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc' 2024-12-04T13:41:12,524 adding 'pyfus/atlases/atlases_npy/__init__.py' 2024-12-04T13:41:12,730 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy' 2024-12-04T13:41:12,965 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy' 2024-12-04T13:41:12,997 adding 'pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc' 2024-12-04T13:41:12,999 adding 'pyfus_lib-1.0.2.dist-info/METADATA' 2024-12-04T13:41:13,001 adding 'pyfus_lib-1.0.2.dist-info/WHEEL' 2024-12-04T13:41:13,002 adding 'pyfus_lib-1.0.2.dist-info/top_level.txt' 2024-12-04T13:41:13,004 adding 'pyfus_lib-1.0.2.dist-info/RECORD' 2024-12-04T13:41:13,011 removing build/bdist.linux-armv7l/wheel 2024-12-04T13:41:13,135 Building wheel for pyfus-lib (setup.py): finished with status 'done' 2024-12-04T13:41:13,141 Created wheel for pyfus-lib: filename=pyfus_lib-1.0.2-py3-none-any.whl size=280820 sha256=eec9f1199826260380e19b6aeecd749960914bafd7ecd16e888041735fb92f4f 2024-12-04T13:41:13,142 Stored in directory: /tmp/pip-ephem-wheel-cache-6mg5waye/wheels/57/6a/3a/1caee81c31db2b750bf9db484b7f6613d6ccbb9ce4472c0075 2024-12-04T13:41:13,152 Successfully built pyfus-lib 2024-12-04T13:41:13,162 Removed build tracker: '/tmp/pip-build-tracker-ee9lll7y'