2024-12-04T23:23:29,606 Created temporary directory: /tmp/pip-build-tracker-03_5cgr5 2024-12-04T23:23:29,607 Initialized build tracking at /tmp/pip-build-tracker-03_5cgr5 2024-12-04T23:23:29,607 Created build tracker: /tmp/pip-build-tracker-03_5cgr5 2024-12-04T23:23:29,608 Entered build tracker: /tmp/pip-build-tracker-03_5cgr5 2024-12-04T23:23:29,609 Created temporary directory: /tmp/pip-wheel-eghyi8uy 2024-12-04T23:23:29,613 Created temporary directory: /tmp/pip-ephem-wheel-cache-5d807xh4 2024-12-04T23:23:29,660 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-04T23:23:29,662 2 location(s) to search for versions of hydra-rbp: 2024-12-04T23:23:29,662 * https://pypi.org/simple/hydra-rbp/ 2024-12-04T23:23:29,662 * https://www.piwheels.org/simple/hydra-rbp/ 2024-12-04T23:23:29,663 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/ 2024-12-04T23:23:29,664 Getting page https://pypi.org/simple/hydra-rbp/ 2024-12-04T23:23:29,665 Found index url https://pypi.org/simple/ 2024-12-04T23:23:29,888 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json 2024-12-04T23:23:29,894 Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27 2024-12-04T23:23:29,895 Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28 2024-12-04T23:23:29,895 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,896 Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29 2024-12-04T23:23:29,897 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/2b/eb/56bd5fd43ae21430c6fb8b13146c9f39e742ed414207aaadf1c3657266f3/hydra_rbp-0.1.21.30-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,898 Found link https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.30 2024-12-04T23:23:29,899 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/e5/2d/54a09009e4b876ab35dce61dd20d809ec9823b128f6d918b68397d41f075/hydra_rbp-0.1.21.31-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,900 Found link https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.31 2024-12-04T23:23:29,900 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/ed/14/bd88a23bf60ddc41af6967b180df6a81ca3a07e61a92caccd61004eb7bec/hydra_rbp-0.1.21.32-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,901 Found link https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.32 2024-12-04T23:23:29,902 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/88/57/b1d2918fe6e9988fdf1bc06b7e5c69a89acd7fde29e0a2c635c8439d774d/hydra_rbp-0.1.21.33-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,903 Found link https://files.pythonhosted.org/packages/bc/87/28d107780077880671add84ac044599769995ea63ddafc2003421a8796de/hydra_rbp-0.1.21.33.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.33 2024-12-04T23:23:29,904 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/b9/ba/31dde9b6a647f4552395ac929d97f173aac1943c6807cbd056260e10028c/hydra_rbp-0.1.21.34-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,905 Found link https://files.pythonhosted.org/packages/12/84/4e08c0bc35387dfd2176c0136f91f3e4f2f0009606b3985fab1e652a1497/hydra_rbp-0.1.21.34.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.34 2024-12-04T23:23:29,905 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/a2/61/2f9e31862f6e82e3db3a167ed96f11e18ad33f33543f0d08cad59011b77f/hydra_rbp-0.1.21.35-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,906 Found link https://files.pythonhosted.org/packages/b6/7a/b3e1ea2088b4b45a70921acf27e86ca59f09dce53baebf193d7aeff71632/hydra_rbp-0.1.21.35.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.35 2024-12-04T23:23:29,907 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/c4/c7/de81e6b7177875842f3f8530e5e250827024e346126d590b4395e4346e88/hydra_rbp-0.1.21.36-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,907 Found link https://files.pythonhosted.org/packages/2f/62/89a2812fc1b5e54ead08e0291e7e5f644c7336b5b20bad60fb9a8bf3a257/hydra_rbp-0.1.21.36.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.36 2024-12-04T23:23:29,908 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/7d/a7/6aea5fa8f799c02d37b2d12e4de5a949d7278e3d0b183c12ee14abac713f/hydra_rbp-0.1.21.37-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,909 Found link https://files.pythonhosted.org/packages/83/34/3fdcb936ddb8935f9c3a5081fcba69c91bd501ce1b8f650f35d6646043de/hydra_rbp-0.1.21.37.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.37 2024-12-04T23:23:29,909 Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/de/15/57bed494857b587e5eaae78dc39db9b9aec376b45c737d5c5fa01f5b6ad9/hydra_rbp-0.1.21.38-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:29,910 Found link https://files.pythonhosted.org/packages/a5/a7/b2ba723d678b23cc4af4425623161120e73f17364a453269c73ebe4370ea/hydra_rbp-0.1.21.38.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.38 2024-12-04T23:23:29,911 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/ 2024-12-04T23:23:29,912 Getting page https://www.piwheels.org/simple/hydra-rbp/ 2024-12-04T23:23:29,913 Found index url https://www.piwheels.org/simple/ 2024-12-04T23:23:30,077 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html 2024-12-04T23:23:30,081 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.36-py3-none-any.whl#sha256=4922c7c7690eb946ba439b5029f798884b97e0077a402d8a3dcb8bd5c982b597 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,082 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.35-py3-none-any.whl#sha256=6c3ec66bd534af4362c37423aa91f92ad02101d732b94cbdf28eb56ab8b57c65 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,082 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.34-py3-none-any.whl#sha256=19acfcf39c71eb20541e352df50ac02af84ab12973dba15bb2dce0b73a86fbc6 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,083 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.33-py3-none-any.whl#sha256=bb44a445cfe2552b4ee79605c98945b5fd01b3902ae9f65ed3a7c644be59cad3 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,084 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.32-py3-none-any.whl#sha256=f2c2dd36cbc56568123d1736387532a1e0cb29727a80e19ec147b7b32891ae63 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,084 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.31-py3-none-any.whl#sha256=176bbf98f3d5e29b7c9a5236b92d239567dab6b746703603818e840e0a7857db (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,085 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.30-py3-none-any.whl#sha256=997fd56e129174ba095b515d6883360d8b23cca3c8c83ddeb33c988e0bcc39c8 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,085 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.29-py3-none-any.whl#sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,086 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,086 Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6) 2024-12-04T23:23:30,087 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/ 2024-12-04T23:23:30,088 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/ 2024-12-04T23:23:30,106 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates 2024-12-04T23:23:30,108 Collecting hydra-rbp==0.1.21.38 2024-12-04T23:23:30,110 Created temporary directory: /tmp/pip-unpack-30hlx5lo 2024-12-04T23:23:30,589 Downloading hydra_rbp-0.1.21.38.tar.gz (52.3 MB) 2024-12-04T23:23:49,556 Added hydra-rbp==0.1.21.38 from https://files.pythonhosted.org/packages/a5/a7/b2ba723d678b23cc4af4425623161120e73f17364a453269c73ebe4370ea/hydra_rbp-0.1.21.38.tar.gz to build tracker '/tmp/pip-build-tracker-03_5cgr5' 2024-12-04T23:23:49,558 Running setup.py (path:/tmp/pip-wheel-eghyi8uy/hydra-rbp_79879db4b0fa4939b14e82ad285ae77c/setup.py) egg_info for package hydra-rbp 2024-12-04T23:23:49,559 Created temporary directory: /tmp/pip-pip-egg-info-bc2wa1f8 2024-12-04T23:23:49,560 Preparing metadata (setup.py): started 2024-12-04T23:23:49,561 Running command python setup.py egg_info 2024-12-04T23:23:50,319 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-12-04T23:23:50,319 !! 2024-12-04T23:23:50,320 ******************************************************************************** 2024-12-04T23:23:50,321 Requirements should be satisfied by a PEP 517 installer. 2024-12-04T23:23:50,321 If you are using pip, you can try `pip install --use-pep517`. 2024-12-04T23:23:50,322 ******************************************************************************** 2024-12-04T23:23:50,323 !! 2024-12-04T23:23:50,323 dist.fetch_build_eggs(dist.setup_requires) 2024-12-04T23:23:53,248 running egg_info 2024-12-04T23:23:53,278 creating /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info 2024-12-04T23:23:53,279 writing /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/PKG-INFO 2024-12-04T23:23:53,282 writing dependency_links to /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/dependency_links.txt 2024-12-04T23:23:53,284 writing entry points to /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/entry_points.txt 2024-12-04T23:23:53,286 writing requirements to /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/requires.txt 2024-12-04T23:23:53,287 writing top-level names to /tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/top_level.txt 2024-12-04T23:23:53,288 writing manifest file '/tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/SOURCES.txt' 2024-12-04T23:23:53,409 reading manifest file '/tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/SOURCES.txt' 2024-12-04T23:23:53,410 reading manifest template 'MANIFEST.in' 2024-12-04T23:23:53,415 adding license file 'LICENSE' 2024-12-04T23:23:53,420 writing manifest file '/tmp/pip-pip-egg-info-bc2wa1f8/hydra_rbp.egg-info/SOURCES.txt' 2024-12-04T23:23:53,532 Preparing metadata (setup.py): finished with status 'done' 2024-12-04T23:23:53,536 Source in /tmp/pip-wheel-eghyi8uy/hydra-rbp_79879db4b0fa4939b14e82ad285ae77c has version 0.1.21.38, which satisfies requirement hydra-rbp==0.1.21.38 from https://files.pythonhosted.org/packages/a5/a7/b2ba723d678b23cc4af4425623161120e73f17364a453269c73ebe4370ea/hydra_rbp-0.1.21.38.tar.gz 2024-12-04T23:23:53,537 Removed hydra-rbp==0.1.21.38 from https://files.pythonhosted.org/packages/a5/a7/b2ba723d678b23cc4af4425623161120e73f17364a453269c73ebe4370ea/hydra_rbp-0.1.21.38.tar.gz from build tracker '/tmp/pip-build-tracker-03_5cgr5' 2024-12-04T23:23:53,545 Created temporary directory: /tmp/pip-unpack-rvdk8eaw 2024-12-04T23:23:53,546 Created temporary directory: /tmp/pip-unpack-rk46m4dm 2024-12-04T23:23:53,547 Building wheels for collected packages: hydra-rbp 2024-12-04T23:23:53,551 Created temporary directory: /tmp/pip-wheel-5a07cx2g 2024-12-04T23:23:53,552 Building wheel for hydra-rbp (setup.py): started 2024-12-04T23:23:53,553 Destination directory: /tmp/pip-wheel-5a07cx2g 2024-12-04T23:23:53,554 Running command python setup.py bdist_wheel 2024-12-04T23:23:54,267 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-12-04T23:23:54,267 !! 2024-12-04T23:23:54,268 ******************************************************************************** 2024-12-04T23:23:54,269 Requirements should be satisfied by a PEP 517 installer. 2024-12-04T23:23:54,270 If you are using pip, you can try `pip install --use-pep517`. 2024-12-04T23:23:54,270 ******************************************************************************** 2024-12-04T23:23:54,271 !! 2024-12-04T23:23:54,272 dist.fetch_build_eggs(dist.setup_requires) 2024-12-04T23:23:54,776 running bdist_wheel 2024-12-04T23:23:54,920 running build 2024-12-04T23:23:54,920 running build_py 2024-12-04T23:23:54,953 creating build/lib/HydRa 2024-12-04T23:23:54,955 copying HydRa/test_data_load.py -> build/lib/HydRa 2024-12-04T23:23:54,958 copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa 2024-12-04T23:23:54,961 copying HydRa/__init__.py -> build/lib/HydRa 2024-12-04T23:23:54,963 copying HydRa/HydRa_predict.py -> build/lib/HydRa 2024-12-04T23:23:54,967 creating build/lib/HydRa/evaluation 2024-12-04T23:23:54,968 copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation 2024-12-04T23:23:54,970 copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation 2024-12-04T23:23:54,972 creating build/lib/HydRa/preprocessing 2024-12-04T23:23:54,973 copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing 2024-12-04T23:23:54,976 copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing 2024-12-04T23:23:54,978 copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing 2024-12-04T23:23:54,980 copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing 2024-12-04T23:23:54,983 copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing 2024-12-04T23:23:54,985 creating build/lib/HydRa/training 2024-12-04T23:23:54,986 copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training 2024-12-04T23:23:54,989 copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training 2024-12-04T23:23:54,992 copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training 2024-12-04T23:23:54,996 copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training 2024-12-04T23:23:54,999 copying HydRa/training/__init__.py -> build/lib/HydRa/training 2024-12-04T23:23:55,000 copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training 2024-12-04T23:23:55,004 creating build/lib/HydRa/models 2024-12-04T23:23:55,006 copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models 2024-12-04T23:23:55,010 copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models 2024-12-04T23:23:55,013 copying HydRa/models/__init__.py -> build/lib/HydRa/models 2024-12-04T23:23:55,015 creating build/lib/HydRa/predictions 2024-12-04T23:23:55,016 copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,022 copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,025 copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,027 copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,028 copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,032 copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions 2024-12-04T23:23:55,037 creating build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,038 copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,041 copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,042 copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,045 copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,047 copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,049 copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,051 copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation 2024-12-04T23:23:55,054 creating build/lib/HydRa/preprocessing/Feature_selection 2024-12-04T23:23:55,055 copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection 2024-12-04T23:23:55,057 copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection 2024-12-04T23:23:55,059 running egg_info 2024-12-04T23:23:55,089 writing hydra_rbp.egg-info/PKG-INFO 2024-12-04T23:23:55,094 writing dependency_links to hydra_rbp.egg-info/dependency_links.txt 2024-12-04T23:23:55,095 writing entry points to hydra_rbp.egg-info/entry_points.txt 2024-12-04T23:23:55,097 writing requirements to hydra_rbp.egg-info/requires.txt 2024-12-04T23:23:55,098 writing top-level names to hydra_rbp.egg-info/top_level.txt 2024-12-04T23:23:55,145 reading manifest file 'hydra_rbp.egg-info/SOURCES.txt' 2024-12-04T23:23:55,151 reading manifest template 'MANIFEST.in' 2024-12-04T23:23:55,154 adding license file 'LICENSE' 2024-12-04T23:23:55,160 writing manifest file 'hydra_rbp.egg-info/SOURCES.txt' 2024-12-04T23:23:55,163 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'HydRa.data' is absent from the `packages` configuration. 2024-12-04T23:23:55,164 !! 2024-12-04T23:23:55,165 ******************************************************************************** 2024-12-04T23:23:55,165 ############################ 2024-12-04T23:23:55,166 # Package would be ignored # 2024-12-04T23:23:55,166 ############################ 2024-12-04T23:23:55,167 Python recognizes 'HydRa.data' as an importable package[^1], 2024-12-04T23:23:55,167 but it is absent from setuptools' `packages` configuration. 2024-12-04T23:23:55,168 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T23:23:55,169 package, please make sure that 'HydRa.data' is explicitly added 2024-12-04T23:23:55,169 to the `packages` configuration field. 2024-12-04T23:23:55,170 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T23:23:55,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T23:23:55,171 instead of `find_packages(...)`/`find:`). 2024-12-04T23:23:55,172 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T23:23:55,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T23:23:55,174 If you don't want 'HydRa.data' to be distributed and are 2024-12-04T23:23:55,174 already explicitly excluding 'HydRa.data' via 2024-12-04T23:23:55,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T23:23:55,175 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T23:23:55,176 combination with a more fine grained `package-data` configuration. 2024-12-04T23:23:55,177 You can read more about "package data files" on setuptools documentation page: 2024-12-04T23:23:55,178 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T23:23:55,180 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T23:23:55,180 even if it does not contain any `.py` files. 2024-12-04T23:23:55,181 On the other hand, currently there is no concept of package data 2024-12-04T23:23:55,182 directory, all directories are treated like packages. 2024-12-04T23:23:55,182 ******************************************************************************** 2024-12-04T23:23:55,183 !! 2024-12-04T23:23:55,184 check.warn(importable) 2024-12-04T23:23:55,184 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration. 2024-12-04T23:23:55,185 !! 2024-12-04T23:23:55,193 ******************************************************************************** 2024-12-04T23:23:55,199 ############################ 2024-12-04T23:23:55,202 # Package would be ignored # 2024-12-04T23:23:55,203 ############################ 2024-12-04T23:23:55,204 Python recognizes 'HydRa.pre_trained' as an importable package[^1], 2024-12-04T23:23:55,204 but it is absent from setuptools' `packages` configuration. 2024-12-04T23:23:55,205 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-04T23:23:55,206 package, please make sure that 'HydRa.pre_trained' is explicitly added 2024-12-04T23:23:55,207 to the `packages` configuration field. 2024-12-04T23:23:55,208 Alternatively, you can also rely on setuptools' discovery methods 2024-12-04T23:23:55,208 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-04T23:23:55,209 instead of `find_packages(...)`/`find:`). 2024-12-04T23:23:55,210 You can read more about "package discovery" on setuptools documentation page: 2024-12-04T23:23:55,211 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-04T23:23:55,212 If you don't want 'HydRa.pre_trained' to be distributed and are 2024-12-04T23:23:55,214 already explicitly excluding 'HydRa.pre_trained' via 2024-12-04T23:23:55,218 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-04T23:23:55,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-04T23:23:55,224 combination with a more fine grained `package-data` configuration. 2024-12-04T23:23:55,225 You can read more about "package data files" on setuptools documentation page: 2024-12-04T23:23:55,226 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-04T23:23:55,227 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-04T23:23:55,228 even if it does not contain any `.py` files. 2024-12-04T23:23:55,228 On the other hand, currently there is no concept of package data 2024-12-04T23:23:55,229 directory, all directories are treated like packages. 2024-12-04T23:23:55,230 ******************************************************************************** 2024-12-04T23:23:55,230 !! 2024-12-04T23:23:55,231 check.warn(importable) 2024-12-04T23:23:55,231 creating build/lib/HydRa/data 2024-12-04T23:23:55,232 copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,232 copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,233 copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data 2024-12-04T23:23:55,380 copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,425 copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,470 copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,628 copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,694 copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data 2024-12-04T23:23:55,867 copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,898 copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data 2024-12-04T23:23:55,931 copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data 2024-12-04T23:23:55,937 copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data 2024-12-04T23:23:55,943 copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data 2024-12-04T23:23:55,947 copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data 2024-12-04T23:23:55,949 copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data 2024-12-04T23:23:55,952 copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data 2024-12-04T23:23:56,031 copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data 2024-12-04T23:23:56,033 copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,176 copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,178 copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,180 copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,184 copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,786 copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,788 copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,791 copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data 2024-12-04T23:23:56,858 copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data 2024-12-04T23:23:56,888 copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data 2024-12-04T23:23:56,923 copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data 2024-12-04T23:23:57,043 creating build/lib/HydRa/pre_trained 2024-12-04T23:23:57,044 copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,069 copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,095 copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,098 copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,155 copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,158 copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,215 copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,218 copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,223 copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,242 copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained 2024-12-04T23:23:57,257 copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained 2024-12-04T23:24:00,313 copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained 2024-12-04T23:24:01,224 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-04T23:24:01,224 !! 2024-12-04T23:24:01,225 ******************************************************************************** 2024-12-04T23:24:01,226 Please avoid running ``setup.py`` directly. 2024-12-04T23:24:01,226 Instead, use pypa/build, pypa/installer or other 2024-12-04T23:24:01,227 standards-based tools. 2024-12-04T23:24:01,228 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-04T23:24:01,228 ******************************************************************************** 2024-12-04T23:24:01,229 !! 2024-12-04T23:24:01,229 self.initialize_options() 2024-12-04T23:24:01,257 installing to build/bdist.linux-armv7l/wheel 2024-12-04T23:24:01,257 running install 2024-12-04T23:24:01,283 running install_lib 2024-12-04T23:24:01,312 creating build/bdist.linux-armv7l/wheel 2024-12-04T23:24:01,315 creating build/bdist.linux-armv7l/wheel/HydRa 2024-12-04T23:24:01,318 creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained 2024-12-04T23:24:01,320 copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:01,322 copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:01,380 copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,865 copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,872 copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,911 copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,914 copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,955 copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:05,977 copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:07,666 copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:07,670 copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:07,687 copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/./HydRa/pre_trained 2024-12-04T23:24:07,744 copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/./HydRa 2024-12-04T23:24:07,747 creating build/bdist.linux-armv7l/wheel/HydRa/evaluation 2024-12-04T23:24:07,748 copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/./HydRa/evaluation 2024-12-04T23:24:07,750 copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/evaluation 2024-12-04T23:24:07,753 creating build/bdist.linux-armv7l/wheel/HydRa/data 2024-12-04T23:24:07,754 copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:07,925 copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:07,958 copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,120 copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,157 copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,188 copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,426 copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,429 copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,433 copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,438 copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,440 copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,442 copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:08,444 copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,004 copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,022 copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,178 copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,180 copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,182 copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,213 copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,217 copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,219 copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,257 copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,326 copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,350 copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,475 copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,500 copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,576 copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,578 copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/./HydRa/data 2024-12-04T23:24:09,644 creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing 2024-12-04T23:24:09,646 copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing 2024-12-04T23:24:09,649 copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing 2024-12-04T23:24:09,652 copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing 2024-12-04T23:24:09,654 copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing 2024-12-04T23:24:09,658 creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,659 copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,662 copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,664 copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,667 copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,669 copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,671 copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,674 copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_generation 2024-12-04T23:24:09,676 copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing 2024-12-04T23:24:09,678 creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection 2024-12-04T23:24:09,679 copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_selection 2024-12-04T23:24:09,682 copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/preprocessing/Feature_selection 2024-12-04T23:24:09,684 creating build/bdist.linux-armv7l/wheel/HydRa/training 2024-12-04T23:24:09,685 copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,688 copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,692 copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,695 copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,698 copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,699 copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/./HydRa/training 2024-12-04T23:24:09,703 creating build/bdist.linux-armv7l/wheel/HydRa/models 2024-12-04T23:24:09,704 copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/./HydRa/models 2024-12-04T23:24:09,709 copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/./HydRa/models 2024-12-04T23:24:09,712 copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/models 2024-12-04T23:24:09,714 copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/./HydRa 2024-12-04T23:24:09,718 copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa 2024-12-04T23:24:09,720 copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/./HydRa 2024-12-04T23:24:09,724 creating build/bdist.linux-armv7l/wheel/HydRa/predictions 2024-12-04T23:24:09,725 copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,731 copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,734 copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,737 copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,739 copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,744 copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/./HydRa/predictions 2024-12-04T23:24:09,749 running install_egg_info 2024-12-04T23:24:09,782 Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/./hydra_rbp-0.1.21.38-py3.11.egg-info 2024-12-04T23:24:09,797 running install_scripts 2024-12-04T23:24:09,820 creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.38.dist-info/WHEEL 2024-12-04T23:24:09,822 creating '/tmp/pip-wheel-5a07cx2g/hydra_rbp-0.1.21.38-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-04T23:24:09,828 adding 'HydRa/HydRa2_0_predict.py' 2024-12-04T23:24:09,832 adding 'HydRa/HydRa_predict.py' 2024-12-04T23:24:09,834 adding 'HydRa/__init__.py' 2024-12-04T23:24:09,835 adding 'HydRa/test_data_load.py' 2024-12-04T23:24:10,220 adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv' 2024-12-04T23:24:10,583 adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv' 2024-12-04T23:24:12,721 adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls' 2024-12-04T23:24:13,271 adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv' 2024-12-04T23:24:14,005 adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv' 2024-12-04T23:24:17,323 adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv' 2024-12-04T23:24:18,491 adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv' 2024-12-04T23:24:21,825 adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk' 2024-12-04T23:24:22,451 adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv' 2024-12-04T23:24:23,020 adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv' 2024-12-04T23:24:23,078 adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt' 2024-12-04T23:24:23,121 adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt' 2024-12-04T23:24:23,124 adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl' 2024-12-04T23:24:23,125 adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl' 2024-12-04T23:24:23,127 adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl' 2024-12-04T23:24:24,227 adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv' 2024-12-04T23:24:24,259 adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl' 2024-12-04T23:24:25,927 adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt' 2024-12-04T23:24:25,989 adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt' 2024-12-04T23:24:25,991 adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt' 2024-12-04T23:24:25,993 adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt' 2024-12-04T23:24:29,209 adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt' 2024-12-04T23:24:29,455 adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt' 2024-12-04T23:24:29,457 adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt' 2024-12-04T23:24:30,912 adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt' 2024-12-04T23:24:31,412 adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls' 2024-12-04T23:24:31,986 adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls' 2024-12-04T23:24:34,325 adding 'HydRa/data/protVec_100d_3grams.csv' 2024-12-04T23:24:34,380 adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py' 2024-12-04T23:24:34,381 adding 'HydRa/evaluation/__init__.py' 2024-12-04T23:24:34,386 adding 'HydRa/models/DNN_seq.py' 2024-12-04T23:24:34,389 adding 'HydRa/models/Sequence_class.py' 2024-12-04T23:24:34,391 adding 'HydRa/models/__init__.py' 2024-12-04T23:24:34,617 adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5' 2024-12-04T23:24:34,848 adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5' 2024-12-04T23:24:34,860 adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json' 2024-12-04T23:24:35,458 adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5' 2024-12-04T23:24:35,485 adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json' 2024-12-04T23:24:36,082 adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5' 2024-12-04T23:24:36,181 adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5' 2024-12-04T23:24:36,191 adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5' 2024-12-04T23:24:36,300 adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl' 2024-12-04T23:24:36,403 adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl' 2024-12-04T23:24:41,143 adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl' 2024-12-04T23:24:44,389 adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl' 2024-12-04T23:24:44,801 adding 'HydRa/predictions/Occlusion_1D_analysis_2.py' 2024-12-04T23:24:44,805 adding 'HydRa/predictions/Occlusion_map.py' 2024-12-04T23:24:44,812 adding 'HydRa/predictions/Occlusion_map_v2.py' 2024-12-04T23:24:44,820 adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py' 2024-12-04T23:24:44,830 adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py' 2024-12-04T23:24:44,832 adding 'HydRa/predictions/__init__.py' 2024-12-04T23:24:44,834 adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py' 2024-12-04T23:24:44,836 adding 'HydRa/preprocessing/PPI_feature_generation.py' 2024-12-04T23:24:44,837 adding 'HydRa/preprocessing/__init__.py' 2024-12-04T23:24:44,838 adding 'HydRa/preprocessing/get_SVM_seq_features.py' 2024-12-04T23:24:44,840 adding 'HydRa/preprocessing/predict_SS.py' 2024-12-04T23:24:44,842 adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py' 2024-12-04T23:24:44,843 adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py' 2024-12-04T23:24:44,844 adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py' 2024-12-04T23:24:44,846 adding 'HydRa/preprocessing/Feature_generation/__init__.py' 2024-12-04T23:24:44,847 adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py' 2024-12-04T23:24:44,848 adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py' 2024-12-04T23:24:44,850 adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py' 2024-12-04T23:24:44,852 adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py' 2024-12-04T23:24:44,853 adding 'HydRa/preprocessing/Feature_selection/__init__.py' 2024-12-04T23:24:44,855 adding 'HydRa/training/__init__.py' 2024-12-04T23:24:44,858 adding 'HydRa/training/train_HydRa.py' 2024-12-04T23:24:44,863 adding 'HydRa/training/train_HydRa2_0.py' 2024-12-04T23:24:44,868 adding 'HydRa/training/train_and_evaluate_HydRa.py' 2024-12-04T23:24:44,873 adding 'HydRa/training/train_and_evaluate_HydRa2_0.py' 2024-12-04T23:24:44,878 adding 'HydRa/training/train_and_evaluate_HydRa_bk.py' 2024-12-04T23:24:44,880 adding 'hydra_rbp-0.1.21.38.dist-info/LICENSE' 2024-12-04T23:24:44,882 adding 'hydra_rbp-0.1.21.38.dist-info/METADATA' 2024-12-04T23:24:44,883 adding 'hydra_rbp-0.1.21.38.dist-info/WHEEL' 2024-12-04T23:24:44,884 adding 'hydra_rbp-0.1.21.38.dist-info/entry_points.txt' 2024-12-04T23:24:44,885 adding 'hydra_rbp-0.1.21.38.dist-info/top_level.txt' 2024-12-04T23:24:44,887 adding 'hydra_rbp-0.1.21.38.dist-info/RECORD' 2024-12-04T23:24:44,917 removing build/bdist.linux-armv7l/wheel 2024-12-04T23:24:45,162 Building wheel for hydra-rbp (setup.py): finished with status 'done' 2024-12-04T23:24:46,305 Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.38-py3-none-any.whl size=53764081 sha256=a78644fb4caee2d080c34714ddc972e760f41426adfd16554d4abbd338d24e79 2024-12-04T23:24:46,306 Stored in directory: /tmp/pip-ephem-wheel-cache-5d807xh4/wheels/d7/48/db/439c8953b984c0480c5e9da72b34341ccc513572a73e73b0e6 2024-12-04T23:24:46,339 Successfully built hydra-rbp 2024-12-04T23:24:47,576 Removed build tracker: '/tmp/pip-build-tracker-03_5cgr5'