2024-12-06T22:50:37,028 Created temporary directory: /tmp/pip-build-tracker-9kx73adq
2024-12-06T22:50:37,030 Initialized build tracking at /tmp/pip-build-tracker-9kx73adq
2024-12-06T22:50:37,030 Created build tracker: /tmp/pip-build-tracker-9kx73adq
2024-12-06T22:50:37,031 Entered build tracker: /tmp/pip-build-tracker-9kx73adq
2024-12-06T22:50:37,032 Created temporary directory: /tmp/pip-wheel-nbuu5je9
2024-12-06T22:50:37,035 Created temporary directory: /tmp/pip-ephem-wheel-cache-o6snnviy
2024-12-06T22:50:37,084 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-06T22:50:37,086 2 location(s) to search for versions of pygsva:
2024-12-06T22:50:37,086 * https://pypi.org/simple/pygsva/
2024-12-06T22:50:37,086 * https://www.piwheels.org/simple/pygsva/
2024-12-06T22:50:37,087 Fetching project page and analyzing links: https://pypi.org/simple/pygsva/
2024-12-06T22:50:37,088 Getting page https://pypi.org/simple/pygsva/
2024-12-06T22:50:37,089 Found index url https://pypi.org/simple/
2024-12-06T22:50:37,310 Fetched page https://pypi.org/simple/pygsva/ as application/vnd.pypi.simple.v1+json
2024-12-06T22:50:37,312   Found link https://files.pythonhosted.org/packages/d6/af/4d8dd4e1e6a5b970d9c48cb8d3f8e23114e1e71c3e5938299e41d25e0459/pygsva-0.1.6.tar.gz (from https://pypi.org/simple/pygsva/) (requires-python:>=3.6), version: 0.1.6
2024-12-06T22:50:37,313   Found link https://files.pythonhosted.org/packages/7e/c6/56e0c234633a5ae6c8ad050f497ac4d070a664598275e8f6c72f32181d93/pygsva-0.1.7.tar.gz (from https://pypi.org/simple/pygsva/) (requires-python:>=3.6), version: 0.1.7
2024-12-06T22:50:37,314 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygsva/
2024-12-06T22:50:37,315 Getting page https://www.piwheels.org/simple/pygsva/
2024-12-06T22:50:37,316 Found index url https://www.piwheels.org/simple/
2024-12-06T22:50:37,515 Fetched page https://www.piwheels.org/simple/pygsva/ as text/html
2024-12-06T22:50:37,516   Skipping link: No binaries permitted for pygsva: https://www.piwheels.org/simple/pygsva/pygsva-0.1.6-py3-none-any.whl#sha256=89a77846e420d5a1e705f1dc742cfda0bdd3be6568323b4d002495cdc884c3fe (from https://www.piwheels.org/simple/pygsva/) (requires-python:>=3.6)
2024-12-06T22:50:37,517 Skipping link: not a file: https://www.piwheels.org/simple/pygsva/
2024-12-06T22:50:37,518 Skipping link: not a file: https://pypi.org/simple/pygsva/
2024-12-06T22:50:37,537 Given no hashes to check 1 links for project 'pygsva': discarding no candidates
2024-12-06T22:50:37,539 Collecting pygsva==0.1.7
2024-12-06T22:50:37,541   Created temporary directory: /tmp/pip-unpack-6ye0dc3x
2024-12-06T22:50:37,763   Downloading pygsva-0.1.7.tar.gz (173 kB)
2024-12-06T22:50:37,919   Added pygsva==0.1.7 from https://files.pythonhosted.org/packages/7e/c6/56e0c234633a5ae6c8ad050f497ac4d070a664598275e8f6c72f32181d93/pygsva-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-9kx73adq'
2024-12-06T22:50:37,921   Running setup.py (path:/tmp/pip-wheel-nbuu5je9/pygsva_15f8899718de4d5096e77863223356fc/setup.py) egg_info for package pygsva
2024-12-06T22:50:37,922   Created temporary directory: /tmp/pip-pip-egg-info-do8_3ztg
2024-12-06T22:50:37,923   Preparing metadata (setup.py): started
2024-12-06T22:50:37,924   Running command python setup.py egg_info
2024-12-06T22:50:39,012   running egg_info
2024-12-06T22:50:39,040   creating /tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info
2024-12-06T22:50:39,041   writing /tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/PKG-INFO
2024-12-06T22:50:39,045   writing dependency_links to /tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/dependency_links.txt
2024-12-06T22:50:39,047   writing requirements to /tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/requires.txt
2024-12-06T22:50:39,048   writing top-level names to /tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/top_level.txt
2024-12-06T22:50:39,050   writing manifest file '/tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/SOURCES.txt'
2024-12-06T22:50:39,138   reading manifest file '/tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/SOURCES.txt'
2024-12-06T22:50:39,139   reading manifest template 'MANIFEST.in'
2024-12-06T22:50:39,141   adding license file 'LICENSE'
2024-12-06T22:50:39,144   writing manifest file '/tmp/pip-pip-egg-info-do8_3ztg/pygsva.egg-info/SOURCES.txt'
2024-12-06T22:50:39,251   Preparing metadata (setup.py): finished with status 'done'
2024-12-06T22:50:39,255   Source in /tmp/pip-wheel-nbuu5je9/pygsva_15f8899718de4d5096e77863223356fc has version 0.1.7, which satisfies requirement pygsva==0.1.7 from https://files.pythonhosted.org/packages/7e/c6/56e0c234633a5ae6c8ad050f497ac4d070a664598275e8f6c72f32181d93/pygsva-0.1.7.tar.gz
2024-12-06T22:50:39,256   Removed pygsva==0.1.7 from https://files.pythonhosted.org/packages/7e/c6/56e0c234633a5ae6c8ad050f497ac4d070a664598275e8f6c72f32181d93/pygsva-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-9kx73adq'
2024-12-06T22:50:39,263 Created temporary directory: /tmp/pip-unpack-_w36cxdt
2024-12-06T22:50:39,265 Created temporary directory: /tmp/pip-unpack-odld50ht
2024-12-06T22:50:39,265 Building wheels for collected packages: pygsva
2024-12-06T22:50:39,269   Created temporary directory: /tmp/pip-wheel-mz8izkk5
2024-12-06T22:50:39,270   Building wheel for pygsva (setup.py): started
2024-12-06T22:50:39,271   Destination directory: /tmp/pip-wheel-mz8izkk5
2024-12-06T22:50:39,272   Running command python setup.py bdist_wheel
2024-12-06T22:50:40,298   running bdist_wheel
2024-12-06T22:50:40,431   running build
2024-12-06T22:50:40,431   running build_py
2024-12-06T22:50:40,462   creating build/lib/pygsva
2024-12-06T22:50:40,464   copying pygsva/zscore.py -> build/lib/pygsva
2024-12-06T22:50:40,466   copying pygsva/main.py -> build/lib/pygsva
2024-12-06T22:50:40,468   copying pygsva/param.py -> build/lib/pygsva
2024-12-06T22:50:40,471   copying pygsva/gsvap.py -> build/lib/pygsva
2024-12-06T22:50:40,474   copying pygsva/utils.py -> build/lib/pygsva
2024-12-06T22:50:40,477   copying pygsva/plage.py -> build/lib/pygsva
2024-12-06T22:50:40,480   copying pygsva/data_loader.py -> build/lib/pygsva
2024-12-06T22:50:40,482   copying pygsva/config.py -> build/lib/pygsva
2024-12-06T22:50:40,484   copying pygsva/__init__.py -> build/lib/pygsva
2024-12-06T22:50:40,486   copying pygsva/ssgsea.py -> build/lib/pygsva
2024-12-06T22:50:40,488   running egg_info
2024-12-06T22:50:40,516   writing pygsva.egg-info/PKG-INFO
2024-12-06T22:50:40,519   writing dependency_links to pygsva.egg-info/dependency_links.txt
2024-12-06T22:50:40,521   writing requirements to pygsva.egg-info/requires.txt
2024-12-06T22:50:40,522   writing top-level names to pygsva.egg-info/top_level.txt
2024-12-06T22:50:40,556   reading manifest file 'pygsva.egg-info/SOURCES.txt'
2024-12-06T22:50:40,559   reading manifest template 'MANIFEST.in'
2024-12-06T22:50:40,560   adding license file 'LICENSE'
2024-12-06T22:50:40,563   writing manifest file 'pygsva.egg-info/SOURCES.txt'
2024-12-06T22:50:40,566   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pygsva.data' is absent from the `packages` configuration.
2024-12-06T22:50:40,567   !!

2024-12-06T22:50:40,568           ********************************************************************************
2024-12-06T22:50:40,568           ############################
2024-12-06T22:50:40,569           # Package would be ignored #
2024-12-06T22:50:40,569           ############################
2024-12-06T22:50:40,570           Python recognizes 'pygsva.data' as an importable package[^1],
2024-12-06T22:50:40,571           but it is absent from setuptools' `packages` configuration.

2024-12-06T22:50:40,572           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-06T22:50:40,573           package, please make sure that 'pygsva.data' is explicitly added
2024-12-06T22:50:40,573           to the `packages` configuration field.

2024-12-06T22:50:40,580           Alternatively, you can also rely on setuptools' discovery methods
2024-12-06T22:50:40,582           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-06T22:50:40,583           instead of `find_packages(...)`/`find:`).

2024-12-06T22:50:40,585           You can read more about "package discovery" on setuptools documentation page:

2024-12-06T22:50:40,586           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-06T22:50:40,587           If you don't want 'pygsva.data' to be distributed and are
2024-12-06T22:50:40,587           already explicitly excluding 'pygsva.data' via
2024-12-06T22:50:40,588           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-06T22:50:40,588           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-06T22:50:40,589           combination with a more fine grained `package-data` configuration.

2024-12-06T22:50:40,590           You can read more about "package data files" on setuptools documentation page:

2024-12-06T22:50:40,590           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-06T22:50:40,592           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-06T22:50:40,592                 even if it does not contain any `.py` files.
2024-12-06T22:50:40,593                 On the other hand, currently there is no concept of package data
2024-12-06T22:50:40,593                 directory, all directories are treated like packages.
2024-12-06T22:50:40,594           ********************************************************************************

2024-12-06T22:50:40,594   !!
2024-12-06T22:50:40,595     check.warn(importable)
2024-12-06T22:50:40,595   creating build/lib/pygsva/data
2024-12-06T22:50:40,596   copying pygsva/data/hsko.csv -> build/lib/pygsva/data
2024-12-06T22:50:40,596   copying pygsva/data/pbmc_exp.csv -> build/lib/pygsva/data
2024-12-06T22:50:40,618   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-06T22:50:40,619   !!

2024-12-06T22:50:40,620           ********************************************************************************
2024-12-06T22:50:40,620           Please avoid running ``setup.py`` directly.
2024-12-06T22:50:40,621           Instead, use pypa/build, pypa/installer or other
2024-12-06T22:50:40,621           standards-based tools.

2024-12-06T22:50:40,622           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-06T22:50:40,623           ********************************************************************************

2024-12-06T22:50:40,624   !!
2024-12-06T22:50:40,624     self.initialize_options()
2024-12-06T22:50:40,646   installing to build/bdist.linux-armv7l/wheel
2024-12-06T22:50:40,647   running install
2024-12-06T22:50:40,671   running install_lib
2024-12-06T22:50:40,699   creating build/bdist.linux-armv7l/wheel
2024-12-06T22:50:40,702   creating build/bdist.linux-armv7l/wheel/pygsva
2024-12-06T22:50:40,704   creating build/bdist.linux-armv7l/wheel/pygsva/data
2024-12-06T22:50:40,705   copying build/lib/pygsva/data/hsko.csv -> build/bdist.linux-armv7l/wheel/./pygsva/data
2024-12-06T22:50:40,721   copying build/lib/pygsva/data/pbmc_exp.csv -> build/bdist.linux-armv7l/wheel/./pygsva/data
2024-12-06T22:50:40,724   copying build/lib/pygsva/zscore.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,726   copying build/lib/pygsva/main.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,728   copying build/lib/pygsva/param.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,731   copying build/lib/pygsva/gsvap.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,740   copying build/lib/pygsva/utils.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,743   copying build/lib/pygsva/plage.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,746   copying build/lib/pygsva/data_loader.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,747   copying build/lib/pygsva/config.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,749   copying build/lib/pygsva/__init__.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,751   copying build/lib/pygsva/ssgsea.py -> build/bdist.linux-armv7l/wheel/./pygsva
2024-12-06T22:50:40,753   running install_egg_info
2024-12-06T22:50:40,787   Copying pygsva.egg-info to build/bdist.linux-armv7l/wheel/./pygsva-0.1.7-py3.11.egg-info
2024-12-06T22:50:40,798   running install_scripts
2024-12-06T22:50:40,812   creating build/bdist.linux-armv7l/wheel/pygsva-0.1.7.dist-info/WHEEL
2024-12-06T22:50:40,815   creating '/tmp/pip-wheel-mz8izkk5/pygsva-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-06T22:50:40,817   adding 'pygsva/__init__.py'
2024-12-06T22:50:40,818   adding 'pygsva/config.py'
2024-12-06T22:50:40,820   adding 'pygsva/data_loader.py'
2024-12-06T22:50:40,824   adding 'pygsva/gsvap.py'
2024-12-06T22:50:40,826   adding 'pygsva/main.py'
2024-12-06T22:50:40,828   adding 'pygsva/param.py'
2024-12-06T22:50:40,830   adding 'pygsva/plage.py'
2024-12-06T22:50:40,833   adding 'pygsva/ssgsea.py'
2024-12-06T22:50:40,839   adding 'pygsva/utils.py'
2024-12-06T22:50:40,840   adding 'pygsva/zscore.py'
2024-12-06T22:50:40,936   adding 'pygsva/data/hsko.csv'
2024-12-06T22:50:40,947   adding 'pygsva/data/pbmc_exp.csv'
2024-12-06T22:50:40,950   adding 'pygsva-0.1.7.dist-info/LICENSE'
2024-12-06T22:50:40,952   adding 'pygsva-0.1.7.dist-info/METADATA'
2024-12-06T22:50:40,953   adding 'pygsva-0.1.7.dist-info/WHEEL'
2024-12-06T22:50:40,954   adding 'pygsva-0.1.7.dist-info/top_level.txt'
2024-12-06T22:50:40,955   adding 'pygsva-0.1.7.dist-info/RECORD'
2024-12-06T22:50:40,958   removing build/bdist.linux-armv7l/wheel
2024-12-06T22:50:41,071   Building wheel for pygsva (setup.py): finished with status 'done'
2024-12-06T22:50:41,075   Created wheel for pygsva: filename=pygsva-0.1.7-py3-none-any.whl size=178790 sha256=009a17ade0d8874cf121d7991a1c2a41b4037be0fab67eabca6e3f906171685c
2024-12-06T22:50:41,077   Stored in directory: /tmp/pip-ephem-wheel-cache-o6snnviy/wheels/1b/0a/89/6a6b47bc28a717b4265e5bdb4849db6a35172d08fcd558ba86
2024-12-06T22:50:41,087 Successfully built pygsva
2024-12-06T22:50:41,095 Removed build tracker: '/tmp/pip-build-tracker-9kx73adq'