2024-12-10T06:18:56,876 Created temporary directory: /tmp/pip-build-tracker-dgaf3sxk
2024-12-10T06:18:56,878 Initialized build tracking at /tmp/pip-build-tracker-dgaf3sxk
2024-12-10T06:18:56,878 Created build tracker: /tmp/pip-build-tracker-dgaf3sxk
2024-12-10T06:18:56,879 Entered build tracker: /tmp/pip-build-tracker-dgaf3sxk
2024-12-10T06:18:56,880 Created temporary directory: /tmp/pip-wheel-2e8xymg2
2024-12-10T06:18:56,884 Created temporary directory: /tmp/pip-ephem-wheel-cache-id6d00xb
2024-12-10T06:18:56,927 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-10T06:18:56,930 2 location(s) to search for versions of bifidotyper:
2024-12-10T06:18:56,930 * https://pypi.org/simple/bifidotyper/
2024-12-10T06:18:56,930 * https://www.piwheels.org/simple/bifidotyper/
2024-12-10T06:18:56,931 Fetching project page and analyzing links: https://pypi.org/simple/bifidotyper/
2024-12-10T06:18:56,932 Getting page https://pypi.org/simple/bifidotyper/
2024-12-10T06:18:56,933 Found index url https://pypi.org/simple/
2024-12-10T06:18:57,156 Fetched page https://pypi.org/simple/bifidotyper/ as application/vnd.pypi.simple.v1+json
2024-12-10T06:18:57,157   Skipping link: No binaries permitted for bifidotyper: https://files.pythonhosted.org/packages/fc/9a/6fb06e81111f6faa79e04e4599201225eee8482ff6b5c169ee819dd52693/bifidotyper-0.1.1-py3-none-any.whl (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.6)
2024-12-10T06:18:57,158   Found link https://files.pythonhosted.org/packages/d0/05/9328d607862289f49ad05eb6f42ce1da8a97ceab7a901cbbfa3d40b7aa19/bifidotyper-0.1.1.tar.gz (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.6), version: 0.1.1
2024-12-10T06:18:57,159   Skipping link: No binaries permitted for bifidotyper: https://files.pythonhosted.org/packages/1d/aa/052661a4c9897c34ddd2dfe5acbea27ad194d658561d8188139833e0f3d6/bifidotyper-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7)
2024-12-10T06:18:57,160   Found link https://files.pythonhosted.org/packages/7c/f5/4ba8e0b53e7c0205d753dda20a4f63a93a84721244770be7dbeda631b19f/bifidotyper-0.1.2.tar.gz (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7), version: 0.1.2
2024-12-10T06:18:57,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/bifidotyper/
2024-12-10T06:18:57,162 Getting page https://www.piwheels.org/simple/bifidotyper/
2024-12-10T06:18:57,163 Found index url https://www.piwheels.org/simple/
2024-12-10T06:18:57,338 Fetched page https://www.piwheels.org/simple/bifidotyper/ as text/html
2024-12-10T06:18:57,340   Skipping link: No binaries permitted for bifidotyper: https://www.piwheels.org/simple/bifidotyper/bifidotyper-0.1.1-py3-none-any.whl#sha256=eba1b2faeab12987f228b907fb2ec2ff723bc28d171ceb92ab8812a796392a04 (from https://www.piwheels.org/simple/bifidotyper/) (requires-python:>=3.6)
2024-12-10T06:18:57,341 Skipping link: not a file: https://www.piwheels.org/simple/bifidotyper/
2024-12-10T06:18:57,341 Skipping link: not a file: https://pypi.org/simple/bifidotyper/
2024-12-10T06:18:57,360 Given no hashes to check 1 links for project 'bifidotyper': discarding no candidates
2024-12-10T06:18:57,362 Collecting bifidotyper==0.1.2
2024-12-10T06:18:57,364   Created temporary directory: /tmp/pip-unpack-cg6ifp9j
2024-12-10T06:18:57,590   Downloading bifidotyper-0.1.2.tar.gz (21.6 MB)
2024-12-10T06:19:02,434   Added bifidotyper==0.1.2 from https://files.pythonhosted.org/packages/7c/f5/4ba8e0b53e7c0205d753dda20a4f63a93a84721244770be7dbeda631b19f/bifidotyper-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-dgaf3sxk'
2024-12-10T06:19:02,436   Running setup.py (path:/tmp/pip-wheel-2e8xymg2/bifidotyper_1c279ab879d543a8b600367e3a24b551/setup.py) egg_info for package bifidotyper
2024-12-10T06:19:02,437   Created temporary directory: /tmp/pip-pip-egg-info-g9grlqlo
2024-12-10T06:19:02,438   Preparing metadata (setup.py): started
2024-12-10T06:19:02,439   Running command python setup.py egg_info
2024-12-10T06:19:03,471   running egg_info
2024-12-10T06:19:03,498   creating /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info
2024-12-10T06:19:03,499   writing /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/PKG-INFO
2024-12-10T06:19:03,502   writing dependency_links to /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/dependency_links.txt
2024-12-10T06:19:03,504   writing entry points to /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/entry_points.txt
2024-12-10T06:19:03,506   writing requirements to /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/requires.txt
2024-12-10T06:19:03,507   writing top-level names to /tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/top_level.txt
2024-12-10T06:19:03,508   writing manifest file '/tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/SOURCES.txt'
2024-12-10T06:19:03,593   reading manifest file '/tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/SOURCES.txt'
2024-12-10T06:19:03,595   reading manifest template 'MANIFEST.in'
2024-12-10T06:19:03,602   warning: no previously-included files found matching 'src/bifidotyper/data/bin/salmon'
2024-12-10T06:19:03,603   adding license file 'LICENSE'
2024-12-10T06:19:03,606   writing manifest file '/tmp/pip-pip-egg-info-g9grlqlo/bifidotyper.egg-info/SOURCES.txt'
2024-12-10T06:19:03,713   Preparing metadata (setup.py): finished with status 'done'
2024-12-10T06:19:03,718   Source in /tmp/pip-wheel-2e8xymg2/bifidotyper_1c279ab879d543a8b600367e3a24b551 has version 0.1.2, which satisfies requirement bifidotyper==0.1.2 from https://files.pythonhosted.org/packages/7c/f5/4ba8e0b53e7c0205d753dda20a4f63a93a84721244770be7dbeda631b19f/bifidotyper-0.1.2.tar.gz
2024-12-10T06:19:03,719   Removed bifidotyper==0.1.2 from https://files.pythonhosted.org/packages/7c/f5/4ba8e0b53e7c0205d753dda20a4f63a93a84721244770be7dbeda631b19f/bifidotyper-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-dgaf3sxk'
2024-12-10T06:19:03,725 Created temporary directory: /tmp/pip-unpack-y_o03lj1
2024-12-10T06:19:03,726 Created temporary directory: /tmp/pip-unpack-owpk3r1o
2024-12-10T06:19:03,727 Building wheels for collected packages: bifidotyper
2024-12-10T06:19:03,731   Created temporary directory: /tmp/pip-wheel-zj0xlh56
2024-12-10T06:19:03,731   Building wheel for bifidotyper (setup.py): started
2024-12-10T06:19:03,733   Destination directory: /tmp/pip-wheel-zj0xlh56
2024-12-10T06:19:03,733   Running command python setup.py bdist_wheel
2024-12-10T06:19:04,730   running bdist_wheel
2024-12-10T06:19:04,863   running build
2024-12-10T06:19:04,864   running build_py
2024-12-10T06:19:04,893   creating build/lib/bifidotyper
2024-12-10T06:19:04,895   copying src/bifidotyper/logger.py -> build/lib/bifidotyper
2024-12-10T06:19:04,897   copying src/bifidotyper/processor.py -> build/lib/bifidotyper
2024-12-10T06:19:04,899   copying src/bifidotyper/__init__.py -> build/lib/bifidotyper
2024-12-10T06:19:04,901   copying src/bifidotyper/hmo_genes.py -> build/lib/bifidotyper
2024-12-10T06:19:04,903   copying src/bifidotyper/references.py -> build/lib/bifidotyper
2024-12-10T06:19:04,905   copying src/bifidotyper/sylph.py -> build/lib/bifidotyper
2024-12-10T06:19:04,907   copying src/bifidotyper/plotting.py -> build/lib/bifidotyper
2024-12-10T06:19:04,910   copying src/bifidotyper/cli.py -> build/lib/bifidotyper
2024-12-10T06:19:04,912   running egg_info
2024-12-10T06:19:04,939   writing src/bifidotyper.egg-info/PKG-INFO
2024-12-10T06:19:04,942   writing dependency_links to src/bifidotyper.egg-info/dependency_links.txt
2024-12-10T06:19:04,944   writing entry points to src/bifidotyper.egg-info/entry_points.txt
2024-12-10T06:19:04,945   writing requirements to src/bifidotyper.egg-info/requires.txt
2024-12-10T06:19:04,947   writing top-level names to src/bifidotyper.egg-info/top_level.txt
2024-12-10T06:19:04,979   reading manifest file 'src/bifidotyper.egg-info/SOURCES.txt'
2024-12-10T06:19:04,982   reading manifest template 'MANIFEST.in'
2024-12-10T06:19:04,990   warning: no previously-included files found matching 'src/bifidotyper/data/bin/salmon'
2024-12-10T06:19:04,991   adding license file 'LICENSE'
2024-12-10T06:19:04,994   writing manifest file 'src/bifidotyper.egg-info/SOURCES.txt'
2024-12-10T06:19:04,996   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'bifidotyper.data.bin' is absent from the `packages` configuration.
2024-12-10T06:19:04,997   !!

2024-12-10T06:19:04,998           ********************************************************************************
2024-12-10T06:19:04,999           ############################
2024-12-10T06:19:04,999           # Package would be ignored #
2024-12-10T06:19:04,999           ############################
2024-12-10T06:19:05,000           Python recognizes 'bifidotyper.data.bin' as an importable package[^1],
2024-12-10T06:19:05,000           but it is absent from setuptools' `packages` configuration.

2024-12-10T06:19:05,001           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-10T06:19:05,001           package, please make sure that 'bifidotyper.data.bin' is explicitly added
2024-12-10T06:19:05,002           to the `packages` configuration field.

2024-12-10T06:19:05,003           Alternatively, you can also rely on setuptools' discovery methods
2024-12-10T06:19:05,003           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-10T06:19:05,004           instead of `find_packages(...)`/`find:`).

2024-12-10T06:19:05,004           You can read more about "package discovery" on setuptools documentation page:

2024-12-10T06:19:05,005           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-10T06:19:05,006           If you don't want 'bifidotyper.data.bin' to be distributed and are
2024-12-10T06:19:05,007           already explicitly excluding 'bifidotyper.data.bin' via
2024-12-10T06:19:05,007           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-10T06:19:05,008           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-10T06:19:05,008           combination with a more fine grained `package-data` configuration.

2024-12-10T06:19:05,009           You can read more about "package data files" on setuptools documentation page:

2024-12-10T06:19:05,010           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-10T06:19:05,027           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-10T06:19:05,028                 even if it does not contain any `.py` files.
2024-12-10T06:19:05,028                 On the other hand, currently there is no concept of package data
2024-12-10T06:19:05,029                 directory, all directories are treated like packages.
2024-12-10T06:19:05,029           ********************************************************************************

2024-12-10T06:19:05,034   !!
2024-12-10T06:19:05,035     check.warn(importable)
2024-12-10T06:19:05,035   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'bifidotyper.data.reference' is absent from the `packages` configuration.
2024-12-10T06:19:05,036   !!

2024-12-10T06:19:05,037           ********************************************************************************
2024-12-10T06:19:05,038           ############################
2024-12-10T06:19:05,043           # Package would be ignored #
2024-12-10T06:19:05,052           ############################
2024-12-10T06:19:05,053           Python recognizes 'bifidotyper.data.reference' as an importable package[^1],
2024-12-10T06:19:05,053           but it is absent from setuptools' `packages` configuration.

2024-12-10T06:19:05,055           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-10T06:19:05,055           package, please make sure that 'bifidotyper.data.reference' is explicitly added
2024-12-10T06:19:05,056           to the `packages` configuration field.

2024-12-10T06:19:05,057           Alternatively, you can also rely on setuptools' discovery methods
2024-12-10T06:19:05,058           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-10T06:19:05,059           instead of `find_packages(...)`/`find:`).

2024-12-10T06:19:05,060           You can read more about "package discovery" on setuptools documentation page:

2024-12-10T06:19:05,061           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-10T06:19:05,071           If you don't want 'bifidotyper.data.reference' to be distributed and are
2024-12-10T06:19:05,077           already explicitly excluding 'bifidotyper.data.reference' via
2024-12-10T06:19:05,078           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-10T06:19:05,079           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-10T06:19:05,079           combination with a more fine grained `package-data` configuration.

2024-12-10T06:19:05,084           You can read more about "package data files" on setuptools documentation page:

2024-12-10T06:19:05,085           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-10T06:19:05,086           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-10T06:19:05,087                 even if it does not contain any `.py` files.
2024-12-10T06:19:05,087                 On the other hand, currently there is no concept of package data
2024-12-10T06:19:05,088                 directory, all directories are treated like packages.
2024-12-10T06:19:05,088           ********************************************************************************

2024-12-10T06:19:05,089   !!
2024-12-10T06:19:05,089     check.warn(importable)
2024-12-10T06:19:05,090   creating build/lib/bifidotyper/data/bin
2024-12-10T06:19:05,091   copying src/bifidotyper/data/bin/sylph_aarch64-any-linux -> build/lib/bifidotyper/data/bin
2024-12-10T06:19:05,091   copying src/bifidotyper/data/bin/sylph_arm64-any-darwin -> build/lib/bifidotyper/data/bin
2024-12-10T06:19:05,092   copying src/bifidotyper/data/bin/sylph_x86_64-any-darwin -> build/lib/bifidotyper/data/bin
2024-12-10T06:19:05,092   copying src/bifidotyper/data/bin/sylph_x86_64-any-linux -> build/lib/bifidotyper/data/bin
2024-12-10T06:19:05,117   creating build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,118   copying src/bifidotyper/data/reference/CP001095.1_coding_seqs.gb -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,162   copying src/bifidotyper/data/reference/CP001095.1_gene_sequences.fasta -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,201   copying src/bifidotyper/data/reference/CP001095.1_genes.bed -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,205   copying src/bifidotyper/data/reference/CP001095.1_genes.gff3 -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,227   copying src/bifidotyper/data/reference/CP001095.1_genome.fasta -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,273   copying src/bifidotyper/data/reference/CP001095.1_genome.fasta.fai -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,275   copying src/bifidotyper/data/reference/bifidobacteria_sketches.syldb -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,545   copying src/bifidotyper/data/reference/bifidotyper_graphical_abstract.png -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,556   copying src/bifidotyper/data/reference/genomes.csv -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,559   copying src/bifidotyper/data/reference/get_gene_sequences.sh -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,561   copying src/bifidotyper/data/reference/humann2_HMO_annotation.csv -> build/lib/bifidotyper/data/reference
2024-12-10T06:19:05,590   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-10T06:19:05,590   !!

2024-12-10T06:19:05,592           ********************************************************************************
2024-12-10T06:19:05,592           Please avoid running ``setup.py`` directly.
2024-12-10T06:19:05,593           Instead, use pypa/build, pypa/installer or other
2024-12-10T06:19:05,593           standards-based tools.

2024-12-10T06:19:05,595           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-10T06:19:05,595           ********************************************************************************

2024-12-10T06:19:05,596   !!
2024-12-10T06:19:05,596     self.initialize_options()
2024-12-10T06:19:05,618   installing to build/bdist.linux-armv7l/wheel
2024-12-10T06:19:05,619   running install
2024-12-10T06:19:05,644   running install_lib
2024-12-10T06:19:05,670   creating build/bdist.linux-armv7l/wheel
2024-12-10T06:19:05,672   creating build/bdist.linux-armv7l/wheel/bifidotyper
2024-12-10T06:19:05,673   copying build/lib/bifidotyper/logger.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:05,675   copying build/lib/bifidotyper/processor.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:05,677   copying build/lib/bifidotyper/__init__.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:05,679   creating build/bdist.linux-armv7l/wheel/bifidotyper/data
2024-12-10T06:19:05,681   creating build/bdist.linux-armv7l/wheel/bifidotyper/data/bin
2024-12-10T06:19:05,682   copying build/lib/bifidotyper/data/bin/sylph_aarch64-any-linux -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-10T06:19:05,709   copying build/lib/bifidotyper/data/bin/sylph_x86_64-any-darwin -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-10T06:19:05,741   copying build/lib/bifidotyper/data/bin/sylph_arm64-any-darwin -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-10T06:19:05,769   copying build/lib/bifidotyper/data/bin/sylph_x86_64-any-linux -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-10T06:19:05,802   creating build/bdist.linux-armv7l/wheel/bifidotyper/data/reference
2024-12-10T06:19:05,803   copying build/lib/bifidotyper/data/reference/bifidobacteria_sketches.syldb -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,043   copying build/lib/bifidotyper/data/reference/bifidotyper_graphical_abstract.png -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,054   copying build/lib/bifidotyper/data/reference/humann2_HMO_annotation.csv -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,055   copying build/lib/bifidotyper/data/reference/CP001095.1_gene_sequences.fasta -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,092   copying build/lib/bifidotyper/data/reference/CP001095.1_genes.gff3 -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,115   copying build/lib/bifidotyper/data/reference/genomes.csv -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,118   copying build/lib/bifidotyper/data/reference/CP001095.1_genes.bed -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,121   copying build/lib/bifidotyper/data/reference/get_gene_sequences.sh -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,123   copying build/lib/bifidotyper/data/reference/CP001095.1_genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,125   copying build/lib/bifidotyper/data/reference/CP001095.1_coding_seqs.gb -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,176   copying build/lib/bifidotyper/data/reference/CP001095.1_genome.fasta -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-10T06:19:06,220   copying build/lib/bifidotyper/hmo_genes.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:06,222   copying build/lib/bifidotyper/references.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:06,224   copying build/lib/bifidotyper/sylph.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:06,226   copying build/lib/bifidotyper/plotting.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:06,229   copying build/lib/bifidotyper/cli.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-10T06:19:06,231   running install_egg_info
2024-12-10T06:19:06,267   Copying src/bifidotyper.egg-info to build/bdist.linux-armv7l/wheel/./bifidotyper-0.1.2-py3.11.egg-info
2024-12-10T06:19:06,278   running install_scripts
2024-12-10T06:19:06,294   creating build/bdist.linux-armv7l/wheel/bifidotyper-0.1.2.dist-info/WHEEL
2024-12-10T06:19:06,296   creating '/tmp/pip-wheel-zj0xlh56/bifidotyper-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-10T06:19:06,298   adding 'bifidotyper/__init__.py'
2024-12-10T06:19:06,300   adding 'bifidotyper/cli.py'
2024-12-10T06:19:06,302   adding 'bifidotyper/hmo_genes.py'
2024-12-10T06:19:06,303   adding 'bifidotyper/logger.py'
2024-12-10T06:19:06,306   adding 'bifidotyper/plotting.py'
2024-12-10T06:19:06,307   adding 'bifidotyper/processor.py'
2024-12-10T06:19:06,309   adding 'bifidotyper/references.py'
2024-12-10T06:19:06,310   adding 'bifidotyper/sylph.py'
2024-12-10T06:19:06,603   adding 'bifidotyper/data/bin/sylph_aarch64-any-linux'
2024-12-10T06:19:06,830   adding 'bifidotyper/data/bin/sylph_arm64-any-darwin'
2024-12-10T06:19:07,118   adding 'bifidotyper/data/bin/sylph_x86_64-any-darwin'
2024-12-10T06:19:07,447   adding 'bifidotyper/data/bin/sylph_x86_64-any-linux'
2024-12-10T06:19:07,665   adding 'bifidotyper/data/reference/CP001095.1_coding_seqs.gb'
2024-12-10T06:19:08,948   adding 'bifidotyper/data/reference/CP001095.1_gene_sequences.fasta'
2024-12-10T06:19:08,977   adding 'bifidotyper/data/reference/CP001095.1_genes.bed'
2024-12-10T06:19:09,068   adding 'bifidotyper/data/reference/CP001095.1_genes.gff3'
2024-12-10T06:19:10,585   adding 'bifidotyper/data/reference/CP001095.1_genome.fasta'
2024-12-10T06:19:10,604   adding 'bifidotyper/data/reference/CP001095.1_genome.fasta.fai'
2024-12-10T06:19:12,869   adding 'bifidotyper/data/reference/bifidobacteria_sketches.syldb'
2024-12-10T06:19:13,036   adding 'bifidotyper/data/reference/bifidotyper_graphical_abstract.png'
2024-12-10T06:19:13,042   adding 'bifidotyper/data/reference/genomes.csv'
2024-12-10T06:19:13,043   adding 'bifidotyper/data/reference/get_gene_sequences.sh'
2024-12-10T06:19:13,045   adding 'bifidotyper/data/reference/humann2_HMO_annotation.csv'
2024-12-10T06:19:13,047   adding 'bifidotyper-0.1.2.dist-info/LICENSE'
2024-12-10T06:19:13,048   adding 'bifidotyper-0.1.2.dist-info/METADATA'
2024-12-10T06:19:13,049   adding 'bifidotyper-0.1.2.dist-info/WHEEL'
2024-12-10T06:19:13,050   adding 'bifidotyper-0.1.2.dist-info/entry_points.txt'
2024-12-10T06:19:13,051   adding 'bifidotyper-0.1.2.dist-info/top_level.txt'
2024-12-10T06:19:13,052   adding 'bifidotyper-0.1.2.dist-info/RECORD'
2024-12-10T06:19:13,314   removing build/bdist.linux-armv7l/wheel
2024-12-10T06:19:13,446   Building wheel for bifidotyper (setup.py): finished with status 'done'
2024-12-10T06:19:13,661   Created wheel for bifidotyper: filename=bifidotyper-0.1.2-py3-none-any.whl size=21700334 sha256=4e971662cb2f5174191b544be2d04da89b71c2ab099dc743f37417e6878e358f
2024-12-10T06:19:13,663   Stored in directory: /tmp/pip-ephem-wheel-cache-id6d00xb/wheels/3f/2c/82/143aa608b93160323af6b97f486a073a49815b3eadc59302be
2024-12-10T06:19:13,680 Successfully built bifidotyper
2024-12-10T06:19:14,182 Removed build tracker: '/tmp/pip-build-tracker-dgaf3sxk'