2024-12-11T01:45:13,413 Created temporary directory: /tmp/pip-build-tracker-2tl1124_
2024-12-11T01:45:13,414 Initialized build tracking at /tmp/pip-build-tracker-2tl1124_
2024-12-11T01:45:13,415 Created build tracker: /tmp/pip-build-tracker-2tl1124_
2024-12-11T01:45:13,415 Entered build tracker: /tmp/pip-build-tracker-2tl1124_
2024-12-11T01:45:13,416 Created temporary directory: /tmp/pip-wheel-bud4ws4j
2024-12-11T01:45:13,420 Created temporary directory: /tmp/pip-ephem-wheel-cache-w0l1iddr
2024-12-11T01:45:13,465 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-11T01:45:13,467 2 location(s) to search for versions of bifidotyper:
2024-12-11T01:45:13,467 * https://pypi.org/simple/bifidotyper/
2024-12-11T01:45:13,467 * https://www.piwheels.org/simple/bifidotyper/
2024-12-11T01:45:13,468 Fetching project page and analyzing links: https://pypi.org/simple/bifidotyper/
2024-12-11T01:45:13,469 Getting page https://pypi.org/simple/bifidotyper/
2024-12-11T01:45:13,470 Found index url https://pypi.org/simple/
2024-12-11T01:45:13,691 Fetched page https://pypi.org/simple/bifidotyper/ as application/vnd.pypi.simple.v1+json
2024-12-11T01:45:13,693   Skipping link: No binaries permitted for bifidotyper: https://files.pythonhosted.org/packages/fc/9a/6fb06e81111f6faa79e04e4599201225eee8482ff6b5c169ee819dd52693/bifidotyper-0.1.1-py3-none-any.whl (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.6)
2024-12-11T01:45:13,694   Found link https://files.pythonhosted.org/packages/d0/05/9328d607862289f49ad05eb6f42ce1da8a97ceab7a901cbbfa3d40b7aa19/bifidotyper-0.1.1.tar.gz (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.6), version: 0.1.1
2024-12-11T01:45:13,695   Skipping link: No binaries permitted for bifidotyper: https://files.pythonhosted.org/packages/1d/aa/052661a4c9897c34ddd2dfe5acbea27ad194d658561d8188139833e0f3d6/bifidotyper-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7)
2024-12-11T01:45:13,696   Found link https://files.pythonhosted.org/packages/7c/f5/4ba8e0b53e7c0205d753dda20a4f63a93a84721244770be7dbeda631b19f/bifidotyper-0.1.2.tar.gz (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7), version: 0.1.2
2024-12-11T01:45:13,697   Skipping link: No binaries permitted for bifidotyper: https://files.pythonhosted.org/packages/da/a2/040a8427a2997fc3d55afb8ae0cecdd3d658b1ce526e5ad35b6118c6cf69/bifidotyper-0.1.4-py3-none-any.whl (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7)
2024-12-11T01:45:13,698   Found link https://files.pythonhosted.org/packages/ab/d0/b46b8a268f0d77e4864473399bece588cb0632f58837ecb461d2392c8aa8/bifidotyper-0.1.4.tar.gz (from https://pypi.org/simple/bifidotyper/) (requires-python:>=3.7), version: 0.1.4
2024-12-11T01:45:13,699 Fetching project page and analyzing links: https://www.piwheels.org/simple/bifidotyper/
2024-12-11T01:45:13,700 Getting page https://www.piwheels.org/simple/bifidotyper/
2024-12-11T01:45:13,701 Found index url https://www.piwheels.org/simple/
2024-12-11T01:45:13,867 Fetched page https://www.piwheels.org/simple/bifidotyper/ as text/html
2024-12-11T01:45:13,869   Skipping link: No binaries permitted for bifidotyper: https://www.piwheels.org/simple/bifidotyper/bifidotyper-0.1.2-py3-none-any.whl#sha256=4e971662cb2f5174191b544be2d04da89b71c2ab099dc743f37417e6878e358f (from https://www.piwheels.org/simple/bifidotyper/) (requires-python:>=3.7)
2024-12-11T01:45:13,870   Skipping link: No binaries permitted for bifidotyper: https://www.piwheels.org/simple/bifidotyper/bifidotyper-0.1.1-py3-none-any.whl#sha256=eba1b2faeab12987f228b907fb2ec2ff723bc28d171ceb92ab8812a796392a04 (from https://www.piwheels.org/simple/bifidotyper/) (requires-python:>=3.6)
2024-12-11T01:45:13,870 Skipping link: not a file: https://www.piwheels.org/simple/bifidotyper/
2024-12-11T01:45:13,871 Skipping link: not a file: https://pypi.org/simple/bifidotyper/
2024-12-11T01:45:13,890 Given no hashes to check 1 links for project 'bifidotyper': discarding no candidates
2024-12-11T01:45:13,892 Collecting bifidotyper==0.1.4
2024-12-11T01:45:13,894   Created temporary directory: /tmp/pip-unpack-3tyesr95
2024-12-11T01:45:15,048   Downloading bifidotyper-0.1.4.tar.gz (21.6 MB)
2024-12-11T01:45:19,108   Added bifidotyper==0.1.4 from https://files.pythonhosted.org/packages/ab/d0/b46b8a268f0d77e4864473399bece588cb0632f58837ecb461d2392c8aa8/bifidotyper-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-2tl1124_'
2024-12-11T01:45:19,110   Running setup.py (path:/tmp/pip-wheel-bud4ws4j/bifidotyper_e59ff6613f9c4c13ae768bec8213a861/setup.py) egg_info for package bifidotyper
2024-12-11T01:45:19,111   Created temporary directory: /tmp/pip-pip-egg-info-olwewlny
2024-12-11T01:45:19,111   Preparing metadata (setup.py): started
2024-12-11T01:45:19,113   Running command python setup.py egg_info
2024-12-11T01:45:20,165   running egg_info
2024-12-11T01:45:20,193   creating /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info
2024-12-11T01:45:20,194   writing /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/PKG-INFO
2024-12-11T01:45:20,198   writing dependency_links to /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/dependency_links.txt
2024-12-11T01:45:20,199   writing entry points to /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/entry_points.txt
2024-12-11T01:45:20,200   writing requirements to /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/requires.txt
2024-12-11T01:45:20,201   writing top-level names to /tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/top_level.txt
2024-12-11T01:45:20,203   writing manifest file '/tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/SOURCES.txt'
2024-12-11T01:45:20,290   reading manifest file '/tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/SOURCES.txt'
2024-12-11T01:45:20,292   reading manifest template 'MANIFEST.in'
2024-12-11T01:45:20,300   warning: no previously-included files found matching 'src/bifidotyper/data/bin/salmon'
2024-12-11T01:45:20,300   adding license file 'LICENSE'
2024-12-11T01:45:20,304   writing manifest file '/tmp/pip-pip-egg-info-olwewlny/bifidotyper.egg-info/SOURCES.txt'
2024-12-11T01:45:20,411   Preparing metadata (setup.py): finished with status 'done'
2024-12-11T01:45:20,415   Source in /tmp/pip-wheel-bud4ws4j/bifidotyper_e59ff6613f9c4c13ae768bec8213a861 has version 0.1.4, which satisfies requirement bifidotyper==0.1.4 from https://files.pythonhosted.org/packages/ab/d0/b46b8a268f0d77e4864473399bece588cb0632f58837ecb461d2392c8aa8/bifidotyper-0.1.4.tar.gz
2024-12-11T01:45:20,416   Removed bifidotyper==0.1.4 from https://files.pythonhosted.org/packages/ab/d0/b46b8a268f0d77e4864473399bece588cb0632f58837ecb461d2392c8aa8/bifidotyper-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-2tl1124_'
2024-12-11T01:45:20,423 Created temporary directory: /tmp/pip-unpack-hcakmd95
2024-12-11T01:45:20,424 Created temporary directory: /tmp/pip-unpack-5n_ummj_
2024-12-11T01:45:20,425 Building wheels for collected packages: bifidotyper
2024-12-11T01:45:20,429   Created temporary directory: /tmp/pip-wheel-z8e3wgpx
2024-12-11T01:45:20,430   Building wheel for bifidotyper (setup.py): started
2024-12-11T01:45:20,431   Destination directory: /tmp/pip-wheel-z8e3wgpx
2024-12-11T01:45:20,432   Running command python setup.py bdist_wheel
2024-12-11T01:45:21,467   running bdist_wheel
2024-12-11T01:45:21,600   running build
2024-12-11T01:45:21,601   running build_py
2024-12-11T01:45:21,631   creating build/lib/bifidotyper
2024-12-11T01:45:21,633   copying src/bifidotyper/references.py -> build/lib/bifidotyper
2024-12-11T01:45:21,636   copying src/bifidotyper/sylph.py -> build/lib/bifidotyper
2024-12-11T01:45:21,638   copying src/bifidotyper/plotting.py -> build/lib/bifidotyper
2024-12-11T01:45:21,641   copying src/bifidotyper/logger.py -> build/lib/bifidotyper
2024-12-11T01:45:21,643   copying src/bifidotyper/cli.py -> build/lib/bifidotyper
2024-12-11T01:45:21,646   copying src/bifidotyper/processor.py -> build/lib/bifidotyper
2024-12-11T01:45:21,648   copying src/bifidotyper/hmo_genes.py -> build/lib/bifidotyper
2024-12-11T01:45:21,650   copying src/bifidotyper/__init__.py -> build/lib/bifidotyper
2024-12-11T01:45:21,652   running egg_info
2024-12-11T01:45:21,679   writing src/bifidotyper.egg-info/PKG-INFO
2024-12-11T01:45:21,683   writing dependency_links to src/bifidotyper.egg-info/dependency_links.txt
2024-12-11T01:45:21,684   writing entry points to src/bifidotyper.egg-info/entry_points.txt
2024-12-11T01:45:21,686   writing requirements to src/bifidotyper.egg-info/requires.txt
2024-12-11T01:45:21,687   writing top-level names to src/bifidotyper.egg-info/top_level.txt
2024-12-11T01:45:21,719   reading manifest file 'src/bifidotyper.egg-info/SOURCES.txt'
2024-12-11T01:45:21,723   reading manifest template 'MANIFEST.in'
2024-12-11T01:45:21,731   warning: no previously-included files found matching 'src/bifidotyper/data/bin/salmon'
2024-12-11T01:45:21,732   adding license file 'LICENSE'
2024-12-11T01:45:21,735   writing manifest file 'src/bifidotyper.egg-info/SOURCES.txt'
2024-12-11T01:45:21,738   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'bifidotyper.data.bin' is absent from the `packages` configuration.
2024-12-11T01:45:21,739   !!

2024-12-11T01:45:21,740           ********************************************************************************
2024-12-11T01:45:21,740           ############################
2024-12-11T01:45:21,741           # Package would be ignored #
2024-12-11T01:45:21,741           ############################
2024-12-11T01:45:21,741           Python recognizes 'bifidotyper.data.bin' as an importable package[^1],
2024-12-11T01:45:21,742           but it is absent from setuptools' `packages` configuration.

2024-12-11T01:45:21,743           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-11T01:45:21,743           package, please make sure that 'bifidotyper.data.bin' is explicitly added
2024-12-11T01:45:21,744           to the `packages` configuration field.

2024-12-11T01:45:21,745           Alternatively, you can also rely on setuptools' discovery methods
2024-12-11T01:45:21,745           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-11T01:45:21,746           instead of `find_packages(...)`/`find:`).

2024-12-11T01:45:21,747           You can read more about "package discovery" on setuptools documentation page:

2024-12-11T01:45:21,749           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-11T01:45:21,750           If you don't want 'bifidotyper.data.bin' to be distributed and are
2024-12-11T01:45:21,750           already explicitly excluding 'bifidotyper.data.bin' via
2024-12-11T01:45:21,751           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-11T01:45:21,752           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-11T01:45:21,753           combination with a more fine grained `package-data` configuration.

2024-12-11T01:45:21,754           You can read more about "package data files" on setuptools documentation page:

2024-12-11T01:45:21,755           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-11T01:45:21,763           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-11T01:45:21,770                 even if it does not contain any `.py` files.
2024-12-11T01:45:21,771                 On the other hand, currently there is no concept of package data
2024-12-11T01:45:21,773                 directory, all directories are treated like packages.
2024-12-11T01:45:21,774           ********************************************************************************

2024-12-11T01:45:21,783   !!
2024-12-11T01:45:21,789     check.warn(importable)
2024-12-11T01:45:21,796   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'bifidotyper.data.reference' is absent from the `packages` configuration.
2024-12-11T01:45:21,797   !!

2024-12-11T01:45:21,798           ********************************************************************************
2024-12-11T01:45:21,799           ############################
2024-12-11T01:45:21,800           # Package would be ignored #
2024-12-11T01:45:21,801           ############################
2024-12-11T01:45:21,801           Python recognizes 'bifidotyper.data.reference' as an importable package[^1],
2024-12-11T01:45:21,802           but it is absent from setuptools' `packages` configuration.

2024-12-11T01:45:21,803           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-11T01:45:21,803           package, please make sure that 'bifidotyper.data.reference' is explicitly added
2024-12-11T01:45:21,804           to the `packages` configuration field.

2024-12-11T01:45:21,805           Alternatively, you can also rely on setuptools' discovery methods
2024-12-11T01:45:21,805           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-11T01:45:21,806           instead of `find_packages(...)`/`find:`).

2024-12-11T01:45:21,807           You can read more about "package discovery" on setuptools documentation page:

2024-12-11T01:45:21,807           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-11T01:45:21,816           If you don't want 'bifidotyper.data.reference' to be distributed and are
2024-12-11T01:45:21,823           already explicitly excluding 'bifidotyper.data.reference' via
2024-12-11T01:45:21,824           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-11T01:45:21,825           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-11T01:45:21,826           combination with a more fine grained `package-data` configuration.

2024-12-11T01:45:21,827           You can read more about "package data files" on setuptools documentation page:

2024-12-11T01:45:21,832           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-11T01:45:21,834           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-11T01:45:21,835                 even if it does not contain any `.py` files.
2024-12-11T01:45:21,835                 On the other hand, currently there is no concept of package data
2024-12-11T01:45:21,836                 directory, all directories are treated like packages.
2024-12-11T01:45:21,837           ********************************************************************************

2024-12-11T01:45:21,842   !!
2024-12-11T01:45:21,844     check.warn(importable)
2024-12-11T01:45:21,851   creating build/lib/bifidotyper/data/bin
2024-12-11T01:45:21,856   copying src/bifidotyper/data/bin/sylph_aarch64-any-linux -> build/lib/bifidotyper/data/bin
2024-12-11T01:45:21,857   copying src/bifidotyper/data/bin/sylph_arm64-any-darwin -> build/lib/bifidotyper/data/bin
2024-12-11T01:45:21,857   copying src/bifidotyper/data/bin/sylph_x86_64-any-darwin -> build/lib/bifidotyper/data/bin
2024-12-11T01:45:21,858   copying src/bifidotyper/data/bin/sylph_x86_64-any-linux -> build/lib/bifidotyper/data/bin
2024-12-11T01:45:21,858   creating build/lib/bifidotyper/data/reference
2024-12-11T01:45:21,859   copying src/bifidotyper/data/reference/CP001095.1_coding_seqs.gb -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:21,906   copying src/bifidotyper/data/reference/CP001095.1_gene_sequences.fasta -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:21,945   copying src/bifidotyper/data/reference/CP001095.1_genes.bed -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:21,950   copying src/bifidotyper/data/reference/CP001095.1_genes.gff3 -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:21,987   copying src/bifidotyper/data/reference/CP001095.1_genome.fasta -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,032   copying src/bifidotyper/data/reference/CP001095.1_genome.fasta.fai -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,034   copying src/bifidotyper/data/reference/bifidobacteria_sketches.syldb -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,274   copying src/bifidotyper/data/reference/bifidotyper_graphical_abstract.png -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,286   copying src/bifidotyper/data/reference/genomes.csv -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,288   copying src/bifidotyper/data/reference/get_gene_sequences.sh -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,290   copying src/bifidotyper/data/reference/humann2_HMO_annotation.csv -> build/lib/bifidotyper/data/reference
2024-12-11T01:45:22,319   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-11T01:45:22,319   !!

2024-12-11T01:45:22,320           ********************************************************************************
2024-12-11T01:45:22,321           Please avoid running ``setup.py`` directly.
2024-12-11T01:45:22,321           Instead, use pypa/build, pypa/installer or other
2024-12-11T01:45:22,322           standards-based tools.

2024-12-11T01:45:22,323           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-11T01:45:22,323           ********************************************************************************

2024-12-11T01:45:22,324   !!
2024-12-11T01:45:22,324     self.initialize_options()
2024-12-11T01:45:22,346   installing to build/bdist.linux-armv7l/wheel
2024-12-11T01:45:22,347   running install
2024-12-11T01:45:22,371   running install_lib
2024-12-11T01:45:22,398   creating build/bdist.linux-armv7l/wheel
2024-12-11T01:45:22,400   creating build/bdist.linux-armv7l/wheel/bifidotyper
2024-12-11T01:45:22,402   copying build/lib/bifidotyper/references.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:22,405   creating build/bdist.linux-armv7l/wheel/bifidotyper/data
2024-12-11T01:45:22,406   creating build/bdist.linux-armv7l/wheel/bifidotyper/data/reference
2024-12-11T01:45:22,408   copying build/lib/bifidotyper/data/reference/CP001095.1_genome.fasta -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,453   copying build/lib/bifidotyper/data/reference/CP001095.1_genome.fasta.fai -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,455   copying build/lib/bifidotyper/data/reference/CP001095.1_genes.bed -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,459   copying build/lib/bifidotyper/data/reference/CP001095.1_gene_sequences.fasta -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,496   copying build/lib/bifidotyper/data/reference/genomes.csv -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,498   copying build/lib/bifidotyper/data/reference/get_gene_sequences.sh -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,500   copying build/lib/bifidotyper/data/reference/humann2_HMO_annotation.csv -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,502   copying build/lib/bifidotyper/data/reference/CP001095.1_coding_seqs.gb -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,551   copying build/lib/bifidotyper/data/reference/CP001095.1_genes.gff3 -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,577   copying build/lib/bifidotyper/data/reference/bifidotyper_graphical_abstract.png -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,590   copying build/lib/bifidotyper/data/reference/bifidobacteria_sketches.syldb -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/reference
2024-12-11T01:45:22,920   creating build/bdist.linux-armv7l/wheel/bifidotyper/data/bin
2024-12-11T01:45:22,922   copying build/lib/bifidotyper/data/bin/sylph_x86_64-any-darwin -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-11T01:45:22,947   copying build/lib/bifidotyper/data/bin/sylph_arm64-any-darwin -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-11T01:45:22,968   copying build/lib/bifidotyper/data/bin/sylph_aarch64-any-linux -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-11T01:45:22,997   copying build/lib/bifidotyper/data/bin/sylph_x86_64-any-linux -> build/bdist.linux-armv7l/wheel/./bifidotyper/data/bin
2024-12-11T01:45:23,030   copying build/lib/bifidotyper/sylph.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,032   copying build/lib/bifidotyper/plotting.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,035   copying build/lib/bifidotyper/logger.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,037   copying build/lib/bifidotyper/cli.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,040   copying build/lib/bifidotyper/processor.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,042   copying build/lib/bifidotyper/hmo_genes.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,044   copying build/lib/bifidotyper/__init__.py -> build/bdist.linux-armv7l/wheel/./bifidotyper
2024-12-11T01:45:23,046   running install_egg_info
2024-12-11T01:45:23,081   Copying src/bifidotyper.egg-info to build/bdist.linux-armv7l/wheel/./bifidotyper-0.1.4-py3.11.egg-info
2024-12-11T01:45:23,094   running install_scripts
2024-12-11T01:45:23,111   creating build/bdist.linux-armv7l/wheel/bifidotyper-0.1.4.dist-info/WHEEL
2024-12-11T01:45:23,114   creating '/tmp/pip-wheel-z8e3wgpx/bifidotyper-0.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-11T01:45:23,116   adding 'bifidotyper/__init__.py'
2024-12-11T01:45:23,119   adding 'bifidotyper/cli.py'
2024-12-11T01:45:23,121   adding 'bifidotyper/hmo_genes.py'
2024-12-11T01:45:23,123   adding 'bifidotyper/logger.py'
2024-12-11T01:45:23,126   adding 'bifidotyper/plotting.py'
2024-12-11T01:45:23,128   adding 'bifidotyper/processor.py'
2024-12-11T01:45:23,129   adding 'bifidotyper/references.py'
2024-12-11T01:45:23,131   adding 'bifidotyper/sylph.py'
2024-12-11T01:45:23,423   adding 'bifidotyper/data/bin/sylph_aarch64-any-linux'
2024-12-11T01:45:23,651   adding 'bifidotyper/data/bin/sylph_arm64-any-darwin'
2024-12-11T01:45:23,942   adding 'bifidotyper/data/bin/sylph_x86_64-any-darwin'
2024-12-11T01:45:24,271   adding 'bifidotyper/data/bin/sylph_x86_64-any-linux'
2024-12-11T01:45:24,489   adding 'bifidotyper/data/reference/CP001095.1_coding_seqs.gb'
2024-12-11T01:45:25,801   adding 'bifidotyper/data/reference/CP001095.1_gene_sequences.fasta'
2024-12-11T01:45:25,831   adding 'bifidotyper/data/reference/CP001095.1_genes.bed'
2024-12-11T01:45:25,922   adding 'bifidotyper/data/reference/CP001095.1_genes.gff3'
2024-12-11T01:45:27,476   adding 'bifidotyper/data/reference/CP001095.1_genome.fasta'
2024-12-11T01:45:27,496   adding 'bifidotyper/data/reference/CP001095.1_genome.fasta.fai'
2024-12-11T01:45:29,749   adding 'bifidotyper/data/reference/bifidobacteria_sketches.syldb'
2024-12-11T01:45:29,916   adding 'bifidotyper/data/reference/bifidotyper_graphical_abstract.png'
2024-12-11T01:45:29,923   adding 'bifidotyper/data/reference/genomes.csv'
2024-12-11T01:45:29,925   adding 'bifidotyper/data/reference/get_gene_sequences.sh'
2024-12-11T01:45:29,927   adding 'bifidotyper/data/reference/humann2_HMO_annotation.csv'
2024-12-11T01:45:29,930   adding 'bifidotyper-0.1.4.dist-info/LICENSE'
2024-12-11T01:45:29,932   adding 'bifidotyper-0.1.4.dist-info/METADATA'
2024-12-11T01:45:29,933   adding 'bifidotyper-0.1.4.dist-info/WHEEL'
2024-12-11T01:45:29,935   adding 'bifidotyper-0.1.4.dist-info/entry_points.txt'
2024-12-11T01:45:29,936   adding 'bifidotyper-0.1.4.dist-info/top_level.txt'
2024-12-11T01:45:29,937   adding 'bifidotyper-0.1.4.dist-info/RECORD'
2024-12-11T01:45:30,223   removing build/bdist.linux-armv7l/wheel
2024-12-11T01:45:30,356   Building wheel for bifidotyper (setup.py): finished with status 'done'
2024-12-11T01:45:30,572   Created wheel for bifidotyper: filename=bifidotyper-0.1.4-py3-none-any.whl size=21699573 sha256=40fae8c9edefc40abf02b6ee28f2c189340c1f977f3c7732a4c29afd3fc4a787
2024-12-11T01:45:30,574   Stored in directory: /tmp/pip-ephem-wheel-cache-w0l1iddr/wheels/d9/84/f8/1f4dfbe89746df0afd4eb7f6fb21c13c0cb443c09a1f5a08c1
2024-12-11T01:45:30,592 Successfully built bifidotyper
2024-12-11T01:45:31,102 Removed build tracker: '/tmp/pip-build-tracker-2tl1124_'