2024-12-11T20:10:52,119 Created temporary directory: /tmp/pip-build-tracker-rho9fksa 2024-12-11T20:10:52,120 Initialized build tracking at /tmp/pip-build-tracker-rho9fksa 2024-12-11T20:10:52,121 Created build tracker: /tmp/pip-build-tracker-rho9fksa 2024-12-11T20:10:52,121 Entered build tracker: /tmp/pip-build-tracker-rho9fksa 2024-12-11T20:10:52,122 Created temporary directory: /tmp/pip-wheel-i9_enm1k 2024-12-11T20:10:52,126 Created temporary directory: /tmp/pip-ephem-wheel-cache-_fkxvdjx 2024-12-11T20:10:52,172 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-11T20:10:52,175 2 location(s) to search for versions of agentp: 2024-12-11T20:10:52,175 * https://pypi.org/simple/agentp/ 2024-12-11T20:10:52,175 * https://www.piwheels.org/simple/agentp/ 2024-12-11T20:10:52,176 Fetching project page and analyzing links: https://pypi.org/simple/agentp/ 2024-12-11T20:10:52,177 Getting page https://pypi.org/simple/agentp/ 2024-12-11T20:10:52,178 Found index url https://pypi.org/simple/ 2024-12-11T20:10:52,427 Fetched page https://pypi.org/simple/agentp/ as application/vnd.pypi.simple.v1+json 2024-12-11T20:10:52,432 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/63/c7/c420da77ffbf6f1685bfb920c36fe5c23bc1a21be69562359eb282a692af/agentp-0.0.0-py3-none-any.whl (from https://pypi.org/simple/agentp/) 2024-12-11T20:10:52,432 Found link https://files.pythonhosted.org/packages/ef/c3/39d7d9399603a27f1f5a449ffc8e73dc96cec6d27485c0498373edb5e7a2/agentp-0.0.0.tar.gz (from https://pypi.org/simple/agentp/), version: 0.0.0 2024-12-11T20:10:52,433 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/04/f5/a29949dd291199d9954033594de435b9b756cfc293a3fd180dbb3b5afb09/agentp-0.0.1-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,434 Found link https://files.pythonhosted.org/packages/2f/15/7564b8993f3f9f0395fe44f3740d2a0adab96652b08053968bc4ecdf4163/agentp-0.0.1.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.1 2024-12-11T20:10:52,435 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/88/df/e3671c4e9626f3619cd4b7a1a1f097b962a09ef77ba14b6c4bf19f09ad22/agentp-0.0.2-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,436 Found link https://files.pythonhosted.org/packages/e9/5d/cfe347c27bf280017f6b492de48360bdc3fe693ef9a0eb642c4eb7ceac03/agentp-0.0.2.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.2 2024-12-11T20:10:52,436 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/73/52/baae15f5c6826aeda64eb040df49627f1c11d6a2d4a00663d2aff00b014a/agentp-0.0.3-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,437 Found link https://files.pythonhosted.org/packages/a7/47/fe7e1d9f5fb2894bb4f7ef714430b32d177d76fca17e5bd3c04b9b7e1d4d/agentp-0.0.3.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.3 2024-12-11T20:10:52,438 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/fc/85/3e611c42a62f6bcd133550a49e59e9bdbdb608eba1558e4d4ccf14512ff8/agentp-0.0.4-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,439 Found link https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.4 2024-12-11T20:10:52,440 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/e4/15/e44c21259e582061962f51010d056152cba0b12bf9bfd44d265da2927af8/agentp-0.0.5-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,441 Found link https://files.pythonhosted.org/packages/51/22/e2730c33f5471d435a3432e15ebd355021ae46db00b384ea4cfcc304198f/agentp-0.0.5.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.5 2024-12-11T20:10:52,441 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/a8/e9/268c101ac47bf0677d4dd2e8572dd3be00a938d2f7ddf5a805b45c49acbf/agentp-0.0.6-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,442 Found link https://files.pythonhosted.org/packages/94/40/d62592db1f3b3f68c6a67fb7fbd9dd668901996bd83965560021bfef2d99/agentp-0.0.6.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.6 2024-12-11T20:10:52,443 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/b2/f0/305f59cb96c7acf284f5aa7a7a1187858de2f03356ab48e6e0fa454da3ef/agentp-0.0.7-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,444 Found link https://files.pythonhosted.org/packages/6d/6a/e3dbd141c7888f8667ac6060519ae309dead67f96ea62d95199a99119f8f/agentp-0.0.7.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.7 2024-12-11T20:10:52,444 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/79/6d/c18f58de0fe51bae2eb3c99648c647f59d8d7048ac2d6553b71ce2fca908/agentp-0.0.8-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,445 Found link https://files.pythonhosted.org/packages/7a/bb/90f033952a1891bd21af9d2d5871cec2e3a51636c986aa8b901ca22f6ce2/agentp-0.0.8.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.8 2024-12-11T20:10:52,446 Fetching project page and analyzing links: https://www.piwheels.org/simple/agentp/ 2024-12-11T20:10:52,446 Getting page https://www.piwheels.org/simple/agentp/ 2024-12-11T20:10:52,447 Found index url https://www.piwheels.org/simple/ 2024-12-11T20:10:52,614 Fetched page https://www.piwheels.org/simple/agentp/ as text/html 2024-12-11T20:10:52,617 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.7-py3-none-any.whl#sha256=8e281cbe7a00856890b941fdb3cd52daebeaf73199ba78cde97782366c1ad7e8 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,618 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.6-py3-none-any.whl#sha256=2e395861f2e696f2320441b009c2b59f7f9dd56abcba53f829dc8adfb25fa738 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,619 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.5-py3-none-any.whl#sha256=d4ffc9a1669e0e482becc89f84997571a0519320d619b53e6374a4355b6d4486 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,619 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.4-py3-none-any.whl#sha256=d6254a39e689f872b10ced4daa75dbbb2325847199ba3d2620974375a64b79db (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,620 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.3-py3-none-any.whl#sha256=b34af4d99ce4b30f338cce8de9f1320bb9a7f94c8c6c69f829e416f72826cb32 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,620 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.2-py3-none-any.whl#sha256=545867d7a817cae521cbcd185ff85b3c7c75894ffd0168362547c8e92d3c257b (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,621 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.1-py3-none-any.whl#sha256=1dd0042825fe12a927a71dcfa5513862427dcd96e304ca82a21b17d51b34ea8f (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-11T20:10:52,622 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.0-py3-none-any.whl#sha256=d8a9c41725f1c435b0e2faa6b7688de8973d4049ee5fe99e6e285c4b423f6c11 (from https://www.piwheels.org/simple/agentp/) 2024-12-11T20:10:52,622 Skipping link: not a file: https://www.piwheels.org/simple/agentp/ 2024-12-11T20:10:52,623 Skipping link: not a file: https://pypi.org/simple/agentp/ 2024-12-11T20:10:52,643 Given no hashes to check 1 links for project 'agentp': discarding no candidates 2024-12-11T20:10:52,644 Collecting agentp==0.0.8 2024-12-11T20:10:52,647 Created temporary directory: /tmp/pip-unpack-rz_7hgif 2024-12-11T20:10:52,875 Downloading agentp-0.0.8.tar.gz (6.5 MB) 2024-12-11T20:10:55,028 Added agentp==0.0.8 from https://files.pythonhosted.org/packages/7a/bb/90f033952a1891bd21af9d2d5871cec2e3a51636c986aa8b901ca22f6ce2/agentp-0.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-rho9fksa' 2024-12-11T20:10:55,031 Running setup.py (path:/tmp/pip-wheel-i9_enm1k/agentp_d0a3a408654e422bb12987f443bc010a/setup.py) egg_info for package agentp 2024-12-11T20:10:55,032 Created temporary directory: /tmp/pip-pip-egg-info-2hqvkgu7 2024-12-11T20:10:55,032 Preparing metadata (setup.py): started 2024-12-11T20:10:55,034 Running command python setup.py egg_info 2024-12-11T20:10:56,125 running egg_info 2024-12-11T20:10:56,152 creating /tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info 2024-12-11T20:10:56,154 writing /tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/PKG-INFO 2024-12-11T20:10:56,157 writing dependency_links to /tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/dependency_links.txt 2024-12-11T20:10:56,159 writing requirements to /tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/requires.txt 2024-12-11T20:10:56,160 writing top-level names to /tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/top_level.txt 2024-12-11T20:10:56,161 writing manifest file '/tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/SOURCES.txt' 2024-12-11T20:10:56,247 reading manifest file '/tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/SOURCES.txt' 2024-12-11T20:10:56,248 reading manifest template 'MANIFEST.in' 2024-12-11T20:10:56,287 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-12-11T20:10:56,288 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-12-11T20:10:56,293 writing manifest file '/tmp/pip-pip-egg-info-2hqvkgu7/agentp.egg-info/SOURCES.txt' 2024-12-11T20:10:56,402 Preparing metadata (setup.py): finished with status 'done' 2024-12-11T20:10:56,406 Source in /tmp/pip-wheel-i9_enm1k/agentp_d0a3a408654e422bb12987f443bc010a has version 0.0.8, which satisfies requirement agentp==0.0.8 from https://files.pythonhosted.org/packages/7a/bb/90f033952a1891bd21af9d2d5871cec2e3a51636c986aa8b901ca22f6ce2/agentp-0.0.8.tar.gz 2024-12-11T20:10:56,407 Removed agentp==0.0.8 from https://files.pythonhosted.org/packages/7a/bb/90f033952a1891bd21af9d2d5871cec2e3a51636c986aa8b901ca22f6ce2/agentp-0.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-rho9fksa' 2024-12-11T20:10:56,413 Created temporary directory: /tmp/pip-unpack-1kdlbf37 2024-12-11T20:10:56,414 Created temporary directory: /tmp/pip-unpack-7cv18qxo 2024-12-11T20:10:56,415 Building wheels for collected packages: agentp 2024-12-11T20:10:56,419 Created temporary directory: /tmp/pip-wheel-24m3dzh_ 2024-12-11T20:10:56,420 Building wheel for agentp (setup.py): started 2024-12-11T20:10:56,421 Destination directory: /tmp/pip-wheel-24m3dzh_ 2024-12-11T20:10:56,422 Running command python setup.py bdist_wheel 2024-12-11T20:10:57,428 running bdist_wheel 2024-12-11T20:10:57,561 running build 2024-12-11T20:10:57,561 running build_py 2024-12-11T20:10:57,591 creating build/lib/agentp 2024-12-11T20:10:57,593 copying agentp/Static.py -> build/lib/agentp 2024-12-11T20:10:57,595 copying agentp/GREX.py -> build/lib/agentp 2024-12-11T20:10:57,597 copying agentp/TWAS.py -> build/lib/agentp 2024-12-11T20:10:57,600 copying agentp/Genotypes.py -> build/lib/agentp 2024-12-11T20:10:57,602 copying agentp/Project.py -> build/lib/agentp 2024-12-11T20:10:57,605 copying agentp/__init__.py -> build/lib/agentp 2024-12-11T20:10:57,607 copying agentp/GWAS.py -> build/lib/agentp 2024-12-11T20:10:57,608 running egg_info 2024-12-11T20:10:57,635 writing agentp.egg-info/PKG-INFO 2024-12-11T20:10:57,638 writing dependency_links to agentp.egg-info/dependency_links.txt 2024-12-11T20:10:57,640 writing requirements to agentp.egg-info/requires.txt 2024-12-11T20:10:57,641 writing top-level names to agentp.egg-info/top_level.txt 2024-12-11T20:10:57,671 reading manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-11T20:10:57,677 reading manifest template 'MANIFEST.in' 2024-12-11T20:10:57,713 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-12-11T20:10:57,715 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-12-11T20:10:57,721 writing manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-11T20:10:57,723 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan' is absent from the `packages` configuration. 2024-12-11T20:10:57,723 !! 2024-12-11T20:10:57,724 ******************************************************************************** 2024-12-11T20:10:57,725 ############################ 2024-12-11T20:10:57,725 # Package would be ignored # 2024-12-11T20:10:57,726 ############################ 2024-12-11T20:10:57,726 Python recognizes 'agentp.external.MetaXcan' as an importable package[^1], 2024-12-11T20:10:57,727 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,728 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,728 package, please make sure that 'agentp.external.MetaXcan' is explicitly added 2024-12-11T20:10:57,728 to the `packages` configuration field. 2024-12-11T20:10:57,730 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,731 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,732 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,734 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,735 If you don't want 'agentp.external.MetaXcan' to be distributed and are 2024-12-11T20:10:57,736 already explicitly excluding 'agentp.external.MetaXcan' via 2024-12-11T20:10:57,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,738 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,739 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,739 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,741 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,741 even if it does not contain any `.py` files. 2024-12-11T20:10:57,742 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,742 directory, all directories are treated like packages. 2024-12-11T20:10:57,743 ******************************************************************************** 2024-12-11T20:10:57,744 !! 2024-12-11T20:10:57,745 check.warn(importable) 2024-12-11T20:10:57,745 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax' is absent from the `packages` configuration. 2024-12-11T20:10:57,746 !! 2024-12-11T20:10:57,747 ******************************************************************************** 2024-12-11T20:10:57,748 ############################ 2024-12-11T20:10:57,749 # Package would be ignored # 2024-12-11T20:10:57,749 ############################ 2024-12-11T20:10:57,749 Python recognizes 'agentp.external.MetaXcan.metax' as an importable package[^1], 2024-12-11T20:10:57,750 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,751 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,751 package, please make sure that 'agentp.external.MetaXcan.metax' is explicitly added 2024-12-11T20:10:57,751 to the `packages` configuration field. 2024-12-11T20:10:57,752 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,752 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,753 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,754 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,755 If you don't want 'agentp.external.MetaXcan.metax' to be distributed and are 2024-12-11T20:10:57,756 already explicitly excluding 'agentp.external.MetaXcan.metax' via 2024-12-11T20:10:57,756 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,757 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,758 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,759 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,761 even if it does not contain any `.py` files. 2024-12-11T20:10:57,761 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,762 directory, all directories are treated like packages. 2024-12-11T20:10:57,762 ******************************************************************************** 2024-12-11T20:10:57,763 !! 2024-12-11T20:10:57,764 check.warn(importable) 2024-12-11T20:10:57,764 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.expression' is absent from the `packages` configuration. 2024-12-11T20:10:57,765 !! 2024-12-11T20:10:57,766 ******************************************************************************** 2024-12-11T20:10:57,766 ############################ 2024-12-11T20:10:57,767 # Package would be ignored # 2024-12-11T20:10:57,768 ############################ 2024-12-11T20:10:57,768 Python recognizes 'agentp.external.MetaXcan.metax.expression' as an importable package[^1], 2024-12-11T20:10:57,769 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,770 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,770 package, please make sure that 'agentp.external.MetaXcan.metax.expression' is explicitly added 2024-12-11T20:10:57,771 to the `packages` configuration field. 2024-12-11T20:10:57,772 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,772 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,773 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,774 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,775 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,776 If you don't want 'agentp.external.MetaXcan.metax.expression' to be distributed and are 2024-12-11T20:10:57,777 already explicitly excluding 'agentp.external.MetaXcan.metax.expression' via 2024-12-11T20:10:57,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,778 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,778 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,779 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,780 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,781 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,782 even if it does not contain any `.py` files. 2024-12-11T20:10:57,782 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,783 directory, all directories are treated like packages. 2024-12-11T20:10:57,783 ******************************************************************************** 2024-12-11T20:10:57,784 !! 2024-12-11T20:10:57,785 check.warn(importable) 2024-12-11T20:10:57,785 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.genotype' is absent from the `packages` configuration. 2024-12-11T20:10:57,785 !! 2024-12-11T20:10:57,787 ******************************************************************************** 2024-12-11T20:10:57,787 ############################ 2024-12-11T20:10:57,787 # Package would be ignored # 2024-12-11T20:10:57,788 ############################ 2024-12-11T20:10:57,788 Python recognizes 'agentp.external.MetaXcan.metax.genotype' as an importable package[^1], 2024-12-11T20:10:57,789 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,790 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,791 package, please make sure that 'agentp.external.MetaXcan.metax.genotype' is explicitly added 2024-12-11T20:10:57,791 to the `packages` configuration field. 2024-12-11T20:10:57,792 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,793 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,793 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,794 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,796 If you don't want 'agentp.external.MetaXcan.metax.genotype' to be distributed and are 2024-12-11T20:10:57,797 already explicitly excluding 'agentp.external.MetaXcan.metax.genotype' via 2024-12-11T20:10:57,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,798 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,800 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,803 even if it does not contain any `.py` files. 2024-12-11T20:10:57,804 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,804 directory, all directories are treated like packages. 2024-12-11T20:10:57,805 ******************************************************************************** 2024-12-11T20:10:57,806 !! 2024-12-11T20:10:57,806 check.warn(importable) 2024-12-11T20:10:57,807 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.gwas' is absent from the `packages` configuration. 2024-12-11T20:10:57,807 !! 2024-12-11T20:10:57,808 ******************************************************************************** 2024-12-11T20:10:57,808 ############################ 2024-12-11T20:10:57,809 # Package would be ignored # 2024-12-11T20:10:57,809 ############################ 2024-12-11T20:10:57,810 Python recognizes 'agentp.external.MetaXcan.metax.gwas' as an importable package[^1], 2024-12-11T20:10:57,811 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,811 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,812 package, please make sure that 'agentp.external.MetaXcan.metax.gwas' is explicitly added 2024-12-11T20:10:57,812 to the `packages` configuration field. 2024-12-11T20:10:57,813 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,814 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,815 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,817 If you don't want 'agentp.external.MetaXcan.metax.gwas' to be distributed and are 2024-12-11T20:10:57,817 already explicitly excluding 'agentp.external.MetaXcan.metax.gwas' via 2024-12-11T20:10:57,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,818 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,819 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,820 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,824 even if it does not contain any `.py` files. 2024-12-11T20:10:57,824 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,825 directory, all directories are treated like packages. 2024-12-11T20:10:57,826 ******************************************************************************** 2024-12-11T20:10:57,827 !! 2024-12-11T20:10:57,827 check.warn(importable) 2024-12-11T20:10:57,828 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.metaxcan' is absent from the `packages` configuration. 2024-12-11T20:10:57,828 !! 2024-12-11T20:10:57,829 ******************************************************************************** 2024-12-11T20:10:57,830 ############################ 2024-12-11T20:10:57,830 # Package would be ignored # 2024-12-11T20:10:57,831 ############################ 2024-12-11T20:10:57,831 Python recognizes 'agentp.external.MetaXcan.metax.metaxcan' as an importable package[^1], 2024-12-11T20:10:57,832 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,833 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,834 package, please make sure that 'agentp.external.MetaXcan.metax.metaxcan' is explicitly added 2024-12-11T20:10:57,835 to the `packages` configuration field. 2024-12-11T20:10:57,836 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,837 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,837 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,839 If you don't want 'agentp.external.MetaXcan.metax.metaxcan' to be distributed and are 2024-12-11T20:10:57,840 already explicitly excluding 'agentp.external.MetaXcan.metax.metaxcan' via 2024-12-11T20:10:57,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,841 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,843 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,846 even if it does not contain any `.py` files. 2024-12-11T20:10:57,846 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,847 directory, all directories are treated like packages. 2024-12-11T20:10:57,848 ******************************************************************************** 2024-12-11T20:10:57,849 !! 2024-12-11T20:10:57,849 check.warn(importable) 2024-12-11T20:10:57,850 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.misc' is absent from the `packages` configuration. 2024-12-11T20:10:57,851 !! 2024-12-11T20:10:57,851 ******************************************************************************** 2024-12-11T20:10:57,852 ############################ 2024-12-11T20:10:57,853 # Package would be ignored # 2024-12-11T20:10:57,853 ############################ 2024-12-11T20:10:57,854 Python recognizes 'agentp.external.MetaXcan.metax.misc' as an importable package[^1], 2024-12-11T20:10:57,854 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,856 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,856 package, please make sure that 'agentp.external.MetaXcan.metax.misc' is explicitly added 2024-12-11T20:10:57,857 to the `packages` configuration field. 2024-12-11T20:10:57,859 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,860 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,861 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,862 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,864 If you don't want 'agentp.external.MetaXcan.metax.misc' to be distributed and are 2024-12-11T20:10:57,864 already explicitly excluding 'agentp.external.MetaXcan.metax.misc' via 2024-12-11T20:10:57,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,866 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,868 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,871 even if it does not contain any `.py` files. 2024-12-11T20:10:57,871 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,872 directory, all directories are treated like packages. 2024-12-11T20:10:57,872 ******************************************************************************** 2024-12-11T20:10:57,873 !! 2024-12-11T20:10:57,873 check.warn(importable) 2024-12-11T20:10:57,874 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.predixcan' is absent from the `packages` configuration. 2024-12-11T20:10:57,874 !! 2024-12-11T20:10:57,875 ******************************************************************************** 2024-12-11T20:10:57,876 ############################ 2024-12-11T20:10:57,876 # Package would be ignored # 2024-12-11T20:10:57,877 ############################ 2024-12-11T20:10:57,877 Python recognizes 'agentp.external.MetaXcan.metax.predixcan' as an importable package[^1], 2024-12-11T20:10:57,878 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,879 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,879 package, please make sure that 'agentp.external.MetaXcan.metax.predixcan' is explicitly added 2024-12-11T20:10:57,879 to the `packages` configuration field. 2024-12-11T20:10:57,881 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,882 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,883 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,886 If you don't want 'agentp.external.MetaXcan.metax.predixcan' to be distributed and are 2024-12-11T20:10:57,886 already explicitly excluding 'agentp.external.MetaXcan.metax.predixcan' via 2024-12-11T20:10:57,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,888 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,890 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,893 even if it does not contain any `.py` files. 2024-12-11T20:10:57,894 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,894 directory, all directories are treated like packages. 2024-12-11T20:10:57,895 ******************************************************************************** 2024-12-11T20:10:57,896 !! 2024-12-11T20:10:57,897 check.warn(importable) 2024-12-11T20:10:57,897 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.fusion_twas' is absent from the `packages` configuration. 2024-12-11T20:10:57,898 !! 2024-12-11T20:10:57,899 ******************************************************************************** 2024-12-11T20:10:57,900 ############################ 2024-12-11T20:10:57,901 # Package would be ignored # 2024-12-11T20:10:57,901 ############################ 2024-12-11T20:10:57,902 Python recognizes 'agentp.external.fusion_twas' as an importable package[^1], 2024-12-11T20:10:57,902 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:57,903 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:57,903 package, please make sure that 'agentp.external.fusion_twas' is explicitly added 2024-12-11T20:10:57,904 to the `packages` configuration field. 2024-12-11T20:10:57,905 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:57,905 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:57,906 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:57,907 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:57,908 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:57,908 If you don't want 'agentp.external.fusion_twas' to be distributed and are 2024-12-11T20:10:57,909 already explicitly excluding 'agentp.external.fusion_twas' via 2024-12-11T20:10:57,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:57,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:57,911 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:57,911 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:57,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:57,917 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:57,918 even if it does not contain any `.py` files. 2024-12-11T20:10:57,924 On the other hand, currently there is no concept of package data 2024-12-11T20:10:57,936 directory, all directories are treated like packages. 2024-12-11T20:10:57,947 ******************************************************************************** 2024-12-11T20:10:57,985 !! 2024-12-11T20:10:58,007 check.warn(importable) 2024-12-11T20:10:58,008 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.fusion_twas.utils' is absent from the `packages` configuration. 2024-12-11T20:10:58,009 !! 2024-12-11T20:10:58,010 ******************************************************************************** 2024-12-11T20:10:58,010 ############################ 2024-12-11T20:10:58,011 # Package would be ignored # 2024-12-11T20:10:58,011 ############################ 2024-12-11T20:10:58,012 Python recognizes 'agentp.external.fusion_twas.utils' as an importable package[^1], 2024-12-11T20:10:58,012 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,013 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,014 package, please make sure that 'agentp.external.fusion_twas.utils' is explicitly added 2024-12-11T20:10:58,015 to the `packages` configuration field. 2024-12-11T20:10:58,016 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,016 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,017 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,019 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,028 If you don't want 'agentp.external.fusion_twas.utils' to be distributed and are 2024-12-11T20:10:58,028 already explicitly excluding 'agentp.external.fusion_twas.utils' via 2024-12-11T20:10:58,028 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,029 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,030 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,033 even if it does not contain any `.py` files. 2024-12-11T20:10:58,033 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,033 directory, all directories are treated like packages. 2024-12-11T20:10:58,034 ******************************************************************************** 2024-12-11T20:10:58,035 !! 2024-12-11T20:10:58,035 check.warn(importable) 2024-12-11T20:10:58,036 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc' is absent from the `packages` configuration. 2024-12-11T20:10:58,036 !! 2024-12-11T20:10:58,037 ******************************************************************************** 2024-12-11T20:10:58,038 ############################ 2024-12-11T20:10:58,038 # Package would be ignored # 2024-12-11T20:10:58,039 ############################ 2024-12-11T20:10:58,039 Python recognizes 'agentp.external.ldsc' as an importable package[^1], 2024-12-11T20:10:58,039 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,040 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,041 package, please make sure that 'agentp.external.ldsc' is explicitly added 2024-12-11T20:10:58,041 to the `packages` configuration field. 2024-12-11T20:10:58,042 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,044 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,045 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,047 If you don't want 'agentp.external.ldsc' to be distributed and are 2024-12-11T20:10:58,048 already explicitly excluding 'agentp.external.ldsc' via 2024-12-11T20:10:58,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,049 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,050 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,053 even if it does not contain any `.py` files. 2024-12-11T20:10:58,054 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,055 directory, all directories are treated like packages. 2024-12-11T20:10:58,055 ******************************************************************************** 2024-12-11T20:10:58,056 !! 2024-12-11T20:10:58,057 check.warn(importable) 2024-12-11T20:10:58,057 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc.ContinuousAnnotations' is absent from the `packages` configuration. 2024-12-11T20:10:58,058 !! 2024-12-11T20:10:58,058 ******************************************************************************** 2024-12-11T20:10:58,059 ############################ 2024-12-11T20:10:58,059 # Package would be ignored # 2024-12-11T20:10:58,060 ############################ 2024-12-11T20:10:58,060 Python recognizes 'agentp.external.ldsc.ContinuousAnnotations' as an importable package[^1], 2024-12-11T20:10:58,060 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,062 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,062 package, please make sure that 'agentp.external.ldsc.ContinuousAnnotations' is explicitly added 2024-12-11T20:10:58,063 to the `packages` configuration field. 2024-12-11T20:10:58,064 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,065 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,066 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,068 If you don't want 'agentp.external.ldsc.ContinuousAnnotations' to be distributed and are 2024-12-11T20:10:58,068 already explicitly excluding 'agentp.external.ldsc.ContinuousAnnotations' via 2024-12-11T20:10:58,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,070 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,070 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,073 even if it does not contain any `.py` files. 2024-12-11T20:10:58,074 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,074 directory, all directories are treated like packages. 2024-12-11T20:10:58,075 ******************************************************************************** 2024-12-11T20:10:58,076 !! 2024-12-11T20:10:58,076 check.warn(importable) 2024-12-11T20:10:58,077 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc.ldscore' is absent from the `packages` configuration. 2024-12-11T20:10:58,077 !! 2024-12-11T20:10:58,078 ******************************************************************************** 2024-12-11T20:10:58,079 ############################ 2024-12-11T20:10:58,079 # Package would be ignored # 2024-12-11T20:10:58,080 ############################ 2024-12-11T20:10:58,080 Python recognizes 'agentp.external.ldsc.ldscore' as an importable package[^1], 2024-12-11T20:10:58,081 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,082 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,083 package, please make sure that 'agentp.external.ldsc.ldscore' is explicitly added 2024-12-11T20:10:58,084 to the `packages` configuration field. 2024-12-11T20:10:58,085 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,086 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,087 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,088 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,089 If you don't want 'agentp.external.ldsc.ldscore' to be distributed and are 2024-12-11T20:10:58,089 already explicitly excluding 'agentp.external.ldsc.ldscore' via 2024-12-11T20:10:58,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,090 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,091 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,094 even if it does not contain any `.py` files. 2024-12-11T20:10:58,094 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,095 directory, all directories are treated like packages. 2024-12-11T20:10:58,096 ******************************************************************************** 2024-12-11T20:10:58,096 !! 2024-12-11T20:10:58,097 check.warn(importable) 2024-12-11T20:10:58,097 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R' is absent from the `packages` configuration. 2024-12-11T20:10:58,098 !! 2024-12-11T20:10:58,099 ******************************************************************************** 2024-12-11T20:10:58,099 ############################ 2024-12-11T20:10:58,099 # Package would be ignored # 2024-12-11T20:10:58,100 ############################ 2024-12-11T20:10:58,100 Python recognizes 'agentp.external.plink2R' as an importable package[^1], 2024-12-11T20:10:58,101 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,102 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,103 package, please make sure that 'agentp.external.plink2R' is explicitly added 2024-12-11T20:10:58,103 to the `packages` configuration field. 2024-12-11T20:10:58,104 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,106 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,107 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,109 If you don't want 'agentp.external.plink2R' to be distributed and are 2024-12-11T20:10:58,109 already explicitly excluding 'agentp.external.plink2R' via 2024-12-11T20:10:58,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,111 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,112 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,122 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,126 even if it does not contain any `.py` files. 2024-12-11T20:10:58,152 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,152 directory, all directories are treated like packages. 2024-12-11T20:10:58,153 ******************************************************************************** 2024-12-11T20:10:58,153 !! 2024-12-11T20:10:58,154 check.warn(importable) 2024-12-11T20:10:58,154 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R' is absent from the `packages` configuration. 2024-12-11T20:10:58,155 !! 2024-12-11T20:10:58,156 ******************************************************************************** 2024-12-11T20:10:58,156 ############################ 2024-12-11T20:10:58,157 # Package would be ignored # 2024-12-11T20:10:58,157 ############################ 2024-12-11T20:10:58,158 Python recognizes 'agentp.external.plink2R.plink2R' as an importable package[^1], 2024-12-11T20:10:58,159 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,162 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,163 package, please make sure that 'agentp.external.plink2R.plink2R' is explicitly added 2024-12-11T20:10:58,163 to the `packages` configuration field. 2024-12-11T20:10:58,164 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,165 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,166 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,167 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,169 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,170 If you don't want 'agentp.external.plink2R.plink2R' to be distributed and are 2024-12-11T20:10:58,171 already explicitly excluding 'agentp.external.plink2R.plink2R' via 2024-12-11T20:10:58,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,174 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,175 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,179 even if it does not contain any `.py` files. 2024-12-11T20:10:58,180 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,181 directory, all directories are treated like packages. 2024-12-11T20:10:58,181 ******************************************************************************** 2024-12-11T20:10:58,182 !! 2024-12-11T20:10:58,183 check.warn(importable) 2024-12-11T20:10:58,184 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.R' is absent from the `packages` configuration. 2024-12-11T20:10:58,185 !! 2024-12-11T20:10:58,186 ******************************************************************************** 2024-12-11T20:10:58,187 ############################ 2024-12-11T20:10:58,188 # Package would be ignored # 2024-12-11T20:10:58,188 ############################ 2024-12-11T20:10:58,189 Python recognizes 'agentp.external.plink2R.plink2R.R' as an importable package[^1], 2024-12-11T20:10:58,190 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,192 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,192 package, please make sure that 'agentp.external.plink2R.plink2R.R' is explicitly added 2024-12-11T20:10:58,193 to the `packages` configuration field. 2024-12-11T20:10:58,194 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,194 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,195 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,196 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,197 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,198 If you don't want 'agentp.external.plink2R.plink2R.R' to be distributed and are 2024-12-11T20:10:58,198 already explicitly excluding 'agentp.external.plink2R.plink2R.R' via 2024-12-11T20:10:58,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,200 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,201 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,202 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,205 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,206 even if it does not contain any `.py` files. 2024-12-11T20:10:58,207 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,207 directory, all directories are treated like packages. 2024-12-11T20:10:58,208 ******************************************************************************** 2024-12-11T20:10:58,209 !! 2024-12-11T20:10:58,210 check.warn(importable) 2024-12-11T20:10:58,210 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.man' is absent from the `packages` configuration. 2024-12-11T20:10:58,211 !! 2024-12-11T20:10:58,213 ******************************************************************************** 2024-12-11T20:10:58,214 ############################ 2024-12-11T20:10:58,215 # Package would be ignored # 2024-12-11T20:10:58,215 ############################ 2024-12-11T20:10:58,216 Python recognizes 'agentp.external.plink2R.plink2R.man' as an importable package[^1], 2024-12-11T20:10:58,217 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,219 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,220 package, please make sure that 'agentp.external.plink2R.plink2R.man' is explicitly added 2024-12-11T20:10:58,220 to the `packages` configuration field. 2024-12-11T20:10:58,221 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,223 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,225 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,226 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,227 If you don't want 'agentp.external.plink2R.plink2R.man' to be distributed and are 2024-12-11T20:10:58,228 already explicitly excluding 'agentp.external.plink2R.plink2R.man' via 2024-12-11T20:10:58,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,230 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,231 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,233 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,233 even if it does not contain any `.py` files. 2024-12-11T20:10:58,234 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,234 directory, all directories are treated like packages. 2024-12-11T20:10:58,235 ******************************************************************************** 2024-12-11T20:10:58,236 !! 2024-12-11T20:10:58,236 check.warn(importable) 2024-12-11T20:10:58,237 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.src' is absent from the `packages` configuration. 2024-12-11T20:10:58,237 !! 2024-12-11T20:10:58,238 ******************************************************************************** 2024-12-11T20:10:58,239 ############################ 2024-12-11T20:10:58,239 # Package would be ignored # 2024-12-11T20:10:58,240 ############################ 2024-12-11T20:10:58,240 Python recognizes 'agentp.external.plink2R.plink2R.src' as an importable package[^1], 2024-12-11T20:10:58,241 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,242 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,242 package, please make sure that 'agentp.external.plink2R.plink2R.src' is explicitly added 2024-12-11T20:10:58,243 to the `packages` configuration field. 2024-12-11T20:10:58,244 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,244 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,245 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,247 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,249 If you don't want 'agentp.external.plink2R.plink2R.src' to be distributed and are 2024-12-11T20:10:58,249 already explicitly excluding 'agentp.external.plink2R.plink2R.src' via 2024-12-11T20:10:58,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,251 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,252 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,253 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,255 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,255 even if it does not contain any `.py` files. 2024-12-11T20:10:58,256 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,256 directory, all directories are treated like packages. 2024-12-11T20:10:58,257 ******************************************************************************** 2024-12-11T20:10:58,258 !! 2024-12-11T20:10:58,259 check.warn(importable) 2024-12-11T20:10:58,259 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.models' is absent from the `packages` configuration. 2024-12-11T20:10:58,260 !! 2024-12-11T20:10:58,261 ******************************************************************************** 2024-12-11T20:10:58,261 ############################ 2024-12-11T20:10:58,262 # Package would be ignored # 2024-12-11T20:10:58,262 ############################ 2024-12-11T20:10:58,263 Python recognizes 'agentp.models' as an importable package[^1], 2024-12-11T20:10:58,263 but it is absent from setuptools' `packages` configuration. 2024-12-11T20:10:58,264 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-11T20:10:58,265 package, please make sure that 'agentp.models' is explicitly added 2024-12-11T20:10:58,265 to the `packages` configuration field. 2024-12-11T20:10:58,266 Alternatively, you can also rely on setuptools' discovery methods 2024-12-11T20:10:58,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-11T20:10:58,267 instead of `find_packages(...)`/`find:`). 2024-12-11T20:10:58,269 You can read more about "package discovery" on setuptools documentation page: 2024-12-11T20:10:58,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-11T20:10:58,270 If you don't want 'agentp.models' to be distributed and are 2024-12-11T20:10:58,271 already explicitly excluding 'agentp.models' via 2024-12-11T20:10:58,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-11T20:10:58,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-11T20:10:58,272 combination with a more fine grained `package-data` configuration. 2024-12-11T20:10:58,273 You can read more about "package data files" on setuptools documentation page: 2024-12-11T20:10:58,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-11T20:10:58,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-11T20:10:58,277 even if it does not contain any `.py` files. 2024-12-11T20:10:58,278 On the other hand, currently there is no concept of package data 2024-12-11T20:10:58,279 directory, all directories are treated like packages. 2024-12-11T20:10:58,279 ******************************************************************************** 2024-12-11T20:10:58,281 !! 2024-12-11T20:10:58,281 check.warn(importable) 2024-12-11T20:10:58,282 creating build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,283 copying agentp/external/MetaXcan/M03_betas.py -> build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,283 copying agentp/external/MetaXcan/M04_zscores.py -> build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,284 copying agentp/external/MetaXcan/PrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,285 copying agentp/external/MetaXcan/Predict.py -> build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,285 copying agentp/external/MetaXcan/SPrediXcan.py -> build/lib/agentp/external/MetaXcan 2024-12-11T20:10:58,286 creating build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,287 copying agentp/external/MetaXcan/metax/Constants.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,287 copying agentp/external/MetaXcan/metax/Exceptions.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,288 copying agentp/external/MetaXcan/metax/Logging.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,289 copying agentp/external/MetaXcan/metax/MatrixManager.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,289 copying agentp/external/MetaXcan/metax/NamingConventions.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,290 copying agentp/external/MetaXcan/metax/PredictionModel.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,291 copying agentp/external/MetaXcan/metax/Utilities.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,292 copying agentp/external/MetaXcan/metax/__init__.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,292 creating build/lib/agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,293 copying agentp/external/MetaXcan/metax/expression/Expression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,293 copying agentp/external/MetaXcan/metax/expression/HDF5Expression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,294 copying agentp/external/MetaXcan/metax/expression/PlainTextExpression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,295 creating build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,295 copying agentp/external/MetaXcan/metax/genotype/DosageGenotype.py -> build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,296 copying agentp/external/MetaXcan/metax/genotype/Genotype.py -> build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,296 creating build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,297 copying agentp/external/MetaXcan/metax/gwas/GWAS.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,298 copying agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,298 copying agentp/external/MetaXcan/metax/gwas/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,299 creating build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,299 copying agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py -> build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,300 copying agentp/external/MetaXcan/metax/metaxcan/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,301 creating build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,301 copying agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,302 copying agentp/external/MetaXcan/metax/misc/GWASAndModels.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,303 copying agentp/external/MetaXcan/metax/misc/Genomics.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,304 copying agentp/external/MetaXcan/metax/misc/KeyedDataSource.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,305 copying agentp/external/MetaXcan/metax/misc/Math.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,305 creating build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,306 copying agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,307 copying agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,307 copying agentp/external/MetaXcan/metax/predixcan/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,308 creating build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,309 copying agentp/external/fusion_twas/FUSION.assoc_test.R -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,309 copying agentp/external/fusion_twas/FUSION.compute_weights.R -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,310 copying agentp/external/fusion_twas/FUSION.post_process.R -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,311 copying agentp/external/fusion_twas/LICENSE -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,312 copying agentp/external/fusion_twas/README.md -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,312 copying agentp/external/fusion_twas/gcta_nr_robust -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,313 copying agentp/external/fusion_twas/glist-hg19 -> build/lib/agentp/external/fusion_twas 2024-12-11T20:10:58,314 creating build/lib/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,315 copying agentp/external/fusion_twas/utils/FUSION.profile_wgt.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,315 copying agentp/external/fusion_twas/utils/README.md -> build/lib/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,316 copying agentp/external/fusion_twas/utils/compare_models.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,316 copying agentp/external/fusion_twas/utils/make_score.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,317 creating build/lib/agentp/external/ldsc 2024-12-11T20:10:58,317 copying agentp/external/ldsc/CHANGELOG -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,318 copying agentp/external/ldsc/LICENSE -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,318 copying agentp/external/ldsc/README.md -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,319 copying agentp/external/ldsc/environment.yml -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,319 copying agentp/external/ldsc/ldsc.py -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,320 copying agentp/external/ldsc/make_annot.py -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,320 copying agentp/external/ldsc/munge_sumstats.py -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,321 copying agentp/external/ldsc/requirements.txt -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,321 copying agentp/external/ldsc/setup.py -> build/lib/agentp/external/ldsc 2024-12-11T20:10:58,322 creating build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,323 copying agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl -> build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,323 copying agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r -> build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,324 creating build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,325 copying agentp/external/ldsc/ldscore/__init__.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,325 copying agentp/external/ldsc/ldscore/irwls.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,326 copying agentp/external/ldsc/ldscore/jackknife.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,327 copying agentp/external/ldsc/ldscore/ldscore.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,327 copying agentp/external/ldsc/ldscore/parse.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,328 copying agentp/external/ldsc/ldscore/regressions.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,329 copying agentp/external/ldsc/ldscore/sumstats.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,329 creating build/lib/agentp/external/plink2R 2024-12-11T20:10:58,330 copying agentp/external/plink2R/README.md -> build/lib/agentp/external/plink2R 2024-12-11T20:10:58,330 copying agentp/external/plink2R/data.bed -> build/lib/agentp/external/plink2R 2024-12-11T20:10:58,331 copying agentp/external/plink2R/data.bim -> build/lib/agentp/external/plink2R 2024-12-11T20:10:58,332 copying agentp/external/plink2R/data.fam -> build/lib/agentp/external/plink2R 2024-12-11T20:10:58,332 copying agentp/external/plink2R/plink2R.R -> build/lib/agentp/external/plink2R 2024-12-11T20:10:58,333 creating build/lib/agentp/external/plink2R/plink2R 2024-12-11T20:10:58,334 copying agentp/external/plink2R/plink2R/DESCRIPTION -> build/lib/agentp/external/plink2R/plink2R 2024-12-11T20:10:58,334 copying agentp/external/plink2R/plink2R/NAMESPACE -> build/lib/agentp/external/plink2R/plink2R 2024-12-11T20:10:58,335 creating build/lib/agentp/external/plink2R/plink2R/R 2024-12-11T20:10:58,336 copying agentp/external/plink2R/plink2R/R/plink2R.R -> build/lib/agentp/external/plink2R/plink2R/R 2024-12-11T20:10:58,337 creating build/lib/agentp/external/plink2R/plink2R/man 2024-12-11T20:10:58,338 copying agentp/external/plink2R/plink2R/man/plink2R-package.Rd -> build/lib/agentp/external/plink2R/plink2R/man 2024-12-11T20:10:58,338 creating build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,339 copying agentp/external/plink2R/plink2R/src/Makevars -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,339 copying agentp/external/plink2R/plink2R/src/Makevars.win -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,340 copying agentp/external/plink2R/plink2R/src/data.cpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,340 copying agentp/external/plink2R/plink2R/src/data.hpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,341 copying agentp/external/plink2R/plink2R/src/data.o -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,341 copying agentp/external/plink2R/plink2R/src/plink2R.cpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,341 copying agentp/external/plink2R/plink2R/src/plink2R.h -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,342 copying agentp/external/plink2R/plink2R/src/plink2R.o -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,343 copying agentp/external/plink2R/plink2R/src/plink2R.so -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,343 creating build/lib/agentp/models 2024-12-11T20:10:58,344 copying agentp/models/README.txt -> build/lib/agentp/models 2024-12-11T20:10:58,344 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-11T20:10:58,345 !! 2024-12-11T20:10:58,346 ******************************************************************************** 2024-12-11T20:10:58,346 Please avoid running ``setup.py`` directly. 2024-12-11T20:10:58,347 Instead, use pypa/build, pypa/installer or other 2024-12-11T20:10:58,347 standards-based tools. 2024-12-11T20:10:58,349 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-11T20:10:58,349 ******************************************************************************** 2024-12-11T20:10:58,350 !! 2024-12-11T20:10:58,351 self.initialize_options() 2024-12-11T20:10:58,352 installing to build/bdist.linux-armv7l/wheel 2024-12-11T20:10:58,352 running install 2024-12-11T20:10:58,362 running install_lib 2024-12-11T20:10:58,394 creating build/bdist.linux-armv7l/wheel 2024-12-11T20:10:58,396 creating build/bdist.linux-armv7l/wheel/agentp 2024-12-11T20:10:58,398 creating build/bdist.linux-armv7l/wheel/agentp/models 2024-12-11T20:10:58,399 copying build/lib/agentp/models/README.txt -> build/bdist.linux-armv7l/wheel/./agentp/models 2024-12-11T20:10:58,401 copying build/lib/agentp/Static.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,403 copying build/lib/agentp/GREX.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,405 copying build/lib/agentp/TWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,407 copying build/lib/agentp/Genotypes.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,410 creating build/bdist.linux-armv7l/wheel/agentp/external 2024-12-11T20:10:58,412 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc 2024-12-11T20:10:58,413 copying build/lib/agentp/external/ldsc/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,415 copying build/lib/agentp/external/ldsc/munge_sumstats.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,418 copying build/lib/agentp/external/ldsc/requirements.txt -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,420 copying build/lib/agentp/external/ldsc/make_annot.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,423 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc/ldscore 2024-12-11T20:10:58,424 copying build/lib/agentp/external/ldsc/ldscore/irwls.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,426 copying build/lib/agentp/external/ldsc/ldscore/ldscore.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,428 copying build/lib/agentp/external/ldsc/ldscore/parse.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,431 copying build/lib/agentp/external/ldsc/ldscore/regressions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,433 copying build/lib/agentp/external/ldsc/ldscore/sumstats.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,436 copying build/lib/agentp/external/ldsc/ldscore/jackknife.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,439 copying build/lib/agentp/external/ldsc/ldscore/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-11T20:10:58,440 copying build/lib/agentp/external/ldsc/CHANGELOG -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,442 copying build/lib/agentp/external/ldsc/setup.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,444 copying build/lib/agentp/external/ldsc/ldsc.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,447 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,448 copying build/lib/agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,451 copying build/lib/agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ContinuousAnnotations 2024-12-11T20:10:58,453 copying build/lib/agentp/external/ldsc/environment.yml -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,455 copying build/lib/agentp/external/ldsc/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-11T20:10:58,458 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R 2024-12-11T20:10:58,460 copying build/lib/agentp/external/plink2R/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-11T20:10:58,461 copying build/lib/agentp/external/plink2R/data.bim -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-11T20:10:58,470 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R 2024-12-11T20:10:58,471 copying build/lib/agentp/external/plink2R/plink2R/DESCRIPTION -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R 2024-12-11T20:10:58,473 copying build/lib/agentp/external/plink2R/plink2R/NAMESPACE -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R 2024-12-11T20:10:58,476 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,477 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.so -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,481 copying build/lib/agentp/external/plink2R/plink2R/src/data.cpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,483 copying build/lib/agentp/external/plink2R/plink2R/src/data.hpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,486 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.cpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,487 copying build/lib/agentp/external/plink2R/plink2R/src/data.o -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,491 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.h -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,493 copying build/lib/agentp/external/plink2R/plink2R/src/Makevars -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,495 copying build/lib/agentp/external/plink2R/plink2R/src/Makevars.win -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,496 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.o -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-11T20:10:58,501 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/R 2024-12-11T20:10:58,502 copying build/lib/agentp/external/plink2R/plink2R/R/plink2R.R -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/R 2024-12-11T20:10:58,505 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/man 2024-12-11T20:10:58,506 copying build/lib/agentp/external/plink2R/plink2R/man/plink2R-package.Rd -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/man 2024-12-11T20:10:58,508 copying build/lib/agentp/external/plink2R/plink2R.R -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-11T20:10:58,510 copying build/lib/agentp/external/plink2R/data.fam -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-11T20:10:58,512 copying build/lib/agentp/external/plink2R/data.bed -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-11T20:10:58,565 creating build/bdist.linux-armv7l/wheel/agentp/external/fusion_twas 2024-12-11T20:10:58,566 copying build/lib/agentp/external/fusion_twas/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,568 copying build/lib/agentp/external/fusion_twas/FUSION.assoc_test.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,571 copying build/lib/agentp/external/fusion_twas/FUSION.compute_weights.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,574 creating build/bdist.linux-armv7l/wheel/agentp/external/fusion_twas/utils 2024-12-11T20:10:58,575 copying build/lib/agentp/external/fusion_twas/utils/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-11T20:10:58,577 copying build/lib/agentp/external/fusion_twas/utils/make_score.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-11T20:10:58,579 copying build/lib/agentp/external/fusion_twas/utils/FUSION.profile_wgt.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-11T20:10:58,581 copying build/lib/agentp/external/fusion_twas/utils/compare_models.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-11T20:10:58,583 copying build/lib/agentp/external/fusion_twas/gcta_nr_robust -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,724 copying build/lib/agentp/external/fusion_twas/glist-hg19 -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,738 copying build/lib/agentp/external/fusion_twas/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,741 copying build/lib/agentp/external/fusion_twas/FUSION.post_process.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-11T20:10:58,745 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan 2024-12-11T20:10:58,747 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax 2024-12-11T20:10:58,749 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,751 copying build/lib/agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,753 copying build/lib/agentp/external/MetaXcan/metax/metaxcan/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/metaxcan 2024-12-11T20:10:58,756 copying build/lib/agentp/external/MetaXcan/metax/Constants.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,758 copying build/lib/agentp/external/MetaXcan/metax/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,761 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,763 copying build/lib/agentp/external/MetaXcan/metax/gwas/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,766 copying build/lib/agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,768 copying build/lib/agentp/external/MetaXcan/metax/gwas/GWAS.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-11T20:10:58,771 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,773 copying build/lib/agentp/external/MetaXcan/metax/genotype/DosageGenotype.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,775 copying build/lib/agentp/external/MetaXcan/metax/genotype/Genotype.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/genotype 2024-12-11T20:10:58,777 copying build/lib/agentp/external/MetaXcan/metax/PredictionModel.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,780 copying build/lib/agentp/external/MetaXcan/metax/Logging.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,783 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,785 copying build/lib/agentp/external/MetaXcan/metax/predixcan/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,788 copying build/lib/agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,791 copying build/lib/agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-11T20:10:58,794 copying build/lib/agentp/external/MetaXcan/metax/MatrixManager.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,797 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,799 copying build/lib/agentp/external/MetaXcan/metax/misc/GWASAndModels.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,801 copying build/lib/agentp/external/MetaXcan/metax/misc/Genomics.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,804 copying build/lib/agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,806 copying build/lib/agentp/external/MetaXcan/metax/misc/KeyedDataSource.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,808 copying build/lib/agentp/external/MetaXcan/metax/misc/Math.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-11T20:10:58,811 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,813 copying build/lib/agentp/external/MetaXcan/metax/expression/PlainTextExpression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,815 copying build/lib/agentp/external/MetaXcan/metax/expression/HDF5Expression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,818 copying build/lib/agentp/external/MetaXcan/metax/expression/Expression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-11T20:10:58,820 copying build/lib/agentp/external/MetaXcan/metax/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,822 copying build/lib/agentp/external/MetaXcan/metax/Exceptions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,824 copying build/lib/agentp/external/MetaXcan/metax/NamingConventions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-11T20:10:58,827 copying build/lib/agentp/external/MetaXcan/SPrediXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-11T20:10:58,829 copying build/lib/agentp/external/MetaXcan/M04_zscores.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-11T20:10:58,832 copying build/lib/agentp/external/MetaXcan/Predict.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-11T20:10:58,834 copying build/lib/agentp/external/MetaXcan/M03_betas.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-11T20:10:58,837 copying build/lib/agentp/external/MetaXcan/PrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-11T20:10:58,840 copying build/lib/agentp/Project.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,842 copying build/lib/agentp/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,845 copying build/lib/agentp/GWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-11T20:10:58,847 running install_egg_info 2024-12-11T20:10:58,881 Copying agentp.egg-info to build/bdist.linux-armv7l/wheel/./agentp-0.0.8-py3.11.egg-info 2024-12-11T20:10:58,891 running install_scripts 2024-12-11T20:10:58,904 creating build/bdist.linux-armv7l/wheel/agentp-0.0.8.dist-info/WHEEL 2024-12-11T20:10:58,906 creating '/tmp/pip-wheel-24m3dzh_/agentp-0.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-11T20:10:58,909 adding 'agentp/GREX.py' 2024-12-11T20:10:58,911 adding 'agentp/GWAS.py' 2024-12-11T20:10:58,912 adding 'agentp/Genotypes.py' 2024-12-11T20:10:58,914 adding 'agentp/Project.py' 2024-12-11T20:10:58,916 adding 'agentp/Static.py' 2024-12-11T20:10:58,918 adding 'agentp/TWAS.py' 2024-12-11T20:10:58,919 adding 'agentp/__init__.py' 2024-12-11T20:10:58,922 adding 'agentp/external/MetaXcan/M03_betas.py' 2024-12-11T20:10:58,924 adding 'agentp/external/MetaXcan/M04_zscores.py' 2024-12-11T20:10:58,925 adding 'agentp/external/MetaXcan/PrediXcanAssociation.py' 2024-12-11T20:10:58,927 adding 'agentp/external/MetaXcan/Predict.py' 2024-12-11T20:10:58,928 adding 'agentp/external/MetaXcan/SPrediXcan.py' 2024-12-11T20:10:58,930 adding 'agentp/external/MetaXcan/metax/Constants.py' 2024-12-11T20:10:58,931 adding 'agentp/external/MetaXcan/metax/Exceptions.py' 2024-12-11T20:10:58,933 adding 'agentp/external/MetaXcan/metax/Logging.py' 2024-12-11T20:10:58,934 adding 'agentp/external/MetaXcan/metax/MatrixManager.py' 2024-12-11T20:10:58,936 adding 'agentp/external/MetaXcan/metax/NamingConventions.py' 2024-12-11T20:10:58,937 adding 'agentp/external/MetaXcan/metax/PredictionModel.py' 2024-12-11T20:10:58,939 adding 'agentp/external/MetaXcan/metax/Utilities.py' 2024-12-11T20:10:58,941 adding 'agentp/external/MetaXcan/metax/__init__.py' 2024-12-11T20:10:58,942 adding 'agentp/external/MetaXcan/metax/expression/Expression.py' 2024-12-11T20:10:58,944 adding 'agentp/external/MetaXcan/metax/expression/HDF5Expression.py' 2024-12-11T20:10:58,945 adding 'agentp/external/MetaXcan/metax/expression/PlainTextExpression.py' 2024-12-11T20:10:58,947 adding 'agentp/external/MetaXcan/metax/genotype/DosageGenotype.py' 2024-12-11T20:10:58,948 adding 'agentp/external/MetaXcan/metax/genotype/Genotype.py' 2024-12-11T20:10:58,951 adding 'agentp/external/MetaXcan/metax/gwas/GWAS.py' 2024-12-11T20:10:58,952 adding 'agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py' 2024-12-11T20:10:58,954 adding 'agentp/external/MetaXcan/metax/gwas/Utilities.py' 2024-12-11T20:10:58,956 adding 'agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py' 2024-12-11T20:10:58,958 adding 'agentp/external/MetaXcan/metax/metaxcan/Utilities.py' 2024-12-11T20:10:58,960 adding 'agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py' 2024-12-11T20:10:58,961 adding 'agentp/external/MetaXcan/metax/misc/GWASAndModels.py' 2024-12-11T20:10:58,962 adding 'agentp/external/MetaXcan/metax/misc/Genomics.py' 2024-12-11T20:10:58,963 adding 'agentp/external/MetaXcan/metax/misc/KeyedDataSource.py' 2024-12-11T20:10:58,965 adding 'agentp/external/MetaXcan/metax/misc/Math.py' 2024-12-11T20:10:58,967 adding 'agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py' 2024-12-11T20:10:58,968 adding 'agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py' 2024-12-11T20:10:58,970 adding 'agentp/external/MetaXcan/metax/predixcan/Utilities.py' 2024-12-11T20:10:58,973 adding 'agentp/external/fusion_twas/FUSION.assoc_test.R' 2024-12-11T20:10:58,975 adding 'agentp/external/fusion_twas/FUSION.compute_weights.R' 2024-12-11T20:10:58,979 adding 'agentp/external/fusion_twas/FUSION.post_process.R' 2024-12-11T20:10:58,985 adding 'agentp/external/fusion_twas/LICENSE' 2024-12-11T20:10:58,987 adding 'agentp/external/fusion_twas/README.md' 2024-12-11T20:11:00,539 adding 'agentp/external/fusion_twas/gcta_nr_robust' 2024-12-11T20:11:00,785 adding 'agentp/external/fusion_twas/glist-hg19' 2024-12-11T20:11:00,792 adding 'agentp/external/fusion_twas/utils/FUSION.profile_wgt.R' 2024-12-11T20:11:00,793 adding 'agentp/external/fusion_twas/utils/README.md' 2024-12-11T20:11:00,795 adding 'agentp/external/fusion_twas/utils/compare_models.R' 2024-12-11T20:11:00,796 adding 'agentp/external/fusion_twas/utils/make_score.R' 2024-12-11T20:11:00,798 adding 'agentp/external/ldsc/CHANGELOG' 2024-12-11T20:11:00,804 adding 'agentp/external/ldsc/LICENSE' 2024-12-11T20:11:00,806 adding 'agentp/external/ldsc/README.md' 2024-12-11T20:11:00,807 adding 'agentp/external/ldsc/environment.yml' 2024-12-11T20:11:00,811 adding 'agentp/external/ldsc/ldsc.py' 2024-12-11T20:11:00,812 adding 'agentp/external/ldsc/make_annot.py' 2024-12-11T20:11:00,816 adding 'agentp/external/ldsc/munge_sumstats.py' 2024-12-11T20:11:00,817 adding 'agentp/external/ldsc/requirements.txt' 2024-12-11T20:11:00,819 adding 'agentp/external/ldsc/setup.py' 2024-12-11T20:11:00,821 adding 'agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl' 2024-12-11T20:11:00,822 adding 'agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r' 2024-12-11T20:11:00,824 adding 'agentp/external/ldsc/ldscore/__init__.py' 2024-12-11T20:11:00,826 adding 'agentp/external/ldsc/ldscore/irwls.py' 2024-12-11T20:11:00,828 adding 'agentp/external/ldsc/ldscore/jackknife.py' 2024-12-11T20:11:00,831 adding 'agentp/external/ldsc/ldscore/ldscore.py' 2024-12-11T20:11:00,832 adding 'agentp/external/ldsc/ldscore/parse.py' 2024-12-11T20:11:00,836 adding 'agentp/external/ldsc/ldscore/regressions.py' 2024-12-11T20:11:00,839 adding 'agentp/external/ldsc/ldscore/sumstats.py' 2024-12-11T20:11:00,841 adding 'agentp/external/plink2R/README.md' 2024-12-11T20:11:01,633 adding 'agentp/external/plink2R/data.bed' 2024-12-11T20:11:01,753 adding 'agentp/external/plink2R/data.bim' 2024-12-11T20:11:01,760 adding 'agentp/external/plink2R/data.fam' 2024-12-11T20:11:01,761 adding 'agentp/external/plink2R/plink2R.R' 2024-12-11T20:11:01,763 adding 'agentp/external/plink2R/plink2R/DESCRIPTION' 2024-12-11T20:11:01,764 adding 'agentp/external/plink2R/plink2R/NAMESPACE' 2024-12-11T20:11:01,765 adding 'agentp/external/plink2R/plink2R/R/plink2R.R' 2024-12-11T20:11:01,767 adding 'agentp/external/plink2R/plink2R/man/plink2R-package.Rd' 2024-12-11T20:11:01,769 adding 'agentp/external/plink2R/plink2R/src/Makevars' 2024-12-11T20:11:01,770 adding 'agentp/external/plink2R/plink2R/src/Makevars.win' 2024-12-11T20:11:01,772 adding 'agentp/external/plink2R/plink2R/src/data.cpp' 2024-12-11T20:11:01,773 adding 'agentp/external/plink2R/plink2R/src/data.hpp' 2024-12-11T20:11:01,779 adding 'agentp/external/plink2R/plink2R/src/data.o' 2024-12-11T20:11:01,780 adding 'agentp/external/plink2R/plink2R/src/plink2R.cpp' 2024-12-11T20:11:01,781 adding 'agentp/external/plink2R/plink2R/src/plink2R.h' 2024-12-11T20:11:01,795 adding 'agentp/external/plink2R/plink2R/src/plink2R.o' 2024-12-11T20:11:01,812 adding 'agentp/external/plink2R/plink2R/src/plink2R.so' 2024-12-11T20:11:01,814 adding 'agentp/models/README.txt' 2024-12-11T20:11:01,816 adding 'agentp-0.0.8.dist-info/METADATA' 2024-12-11T20:11:01,817 adding 'agentp-0.0.8.dist-info/WHEEL' 2024-12-11T20:11:01,818 adding 'agentp-0.0.8.dist-info/top_level.txt' 2024-12-11T20:11:01,820 adding 'agentp-0.0.8.dist-info/RECORD' 2024-12-11T20:11:01,901 removing build/bdist.linux-armv7l/wheel 2024-12-11T20:11:02,046 Building wheel for agentp (setup.py): finished with status 'done' 2024-12-11T20:11:02,112 Created wheel for agentp: filename=agentp-0.0.8-py3-none-any.whl size=6568134 sha256=57a55133a30763621d200e78cbf94a1a9d84d87a0f50d5041f81ce3d703c503f 2024-12-11T20:11:02,113 Stored in directory: /tmp/pip-ephem-wheel-cache-_fkxvdjx/wheels/b6/1e/a4/097a2467d0721018175f49cd6fe6e39cf4b4dab94595aece9b 2024-12-11T20:11:02,127 Successfully built agentp 2024-12-11T20:11:02,304 Removed build tracker: '/tmp/pip-build-tracker-rho9fksa'