2024-12-11T20:23:57,350 Created temporary directory: /tmp/pip-build-tracker-pu86c758 2024-12-11T20:23:57,351 Initialized build tracking at /tmp/pip-build-tracker-pu86c758 2024-12-11T20:23:57,351 Created build tracker: /tmp/pip-build-tracker-pu86c758 2024-12-11T20:23:57,352 Entered build tracker: /tmp/pip-build-tracker-pu86c758 2024-12-11T20:23:57,353 Created temporary directory: /tmp/pip-wheel-ocn0mvr7 2024-12-11T20:23:57,357 Created temporary directory: /tmp/pip-ephem-wheel-cache-16raq_11 2024-12-11T20:23:57,403 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-11T20:23:57,406 2 location(s) to search for versions of nextflow: 2024-12-11T20:23:57,406 * https://pypi.org/simple/nextflow/ 2024-12-11T20:23:57,406 * https://www.piwheels.org/simple/nextflow/ 2024-12-11T20:23:57,407 Fetching project page and analyzing links: https://pypi.org/simple/nextflow/ 2024-12-11T20:23:57,407 Getting page https://pypi.org/simple/nextflow/ 2024-12-11T20:23:57,409 Found index url https://pypi.org/simple/ 2024-12-11T20:23:57,634 Fetched page https://pypi.org/simple/nextflow/ as application/vnd.pypi.simple.v1+json 2024-12-11T20:23:57,638 Found link https://files.pythonhosted.org/packages/d9/3d/162f93ee2c674b19e07782850b8e1044168c3615a9e3e3a9a2d75ad45e8a/nextflow-22.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.1 2024-12-11T20:23:57,639 Found link https://files.pythonhosted.org/packages/0b/00/f6d3c8d84864605147aa79ec17f763fd394f9cfaded672101e3d07bc0345/nextflow-22.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.6 2024-12-11T20:23:57,640 Found link https://files.pythonhosted.org/packages/f5/e8/e0882a1aad0b30b3ac760ae69914ffe986706f12d6539a1c0a08759d0e2b/nextflow-22.10.7.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.7 2024-12-11T20:23:57,640 Found link https://files.pythonhosted.org/packages/d5/eb/d7cd6b33724ea6c37f8dfd4ed4354a06ed66e8a87bb6c50cca26afa3d210/nextflow-23.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.1 2024-12-11T20:23:57,641 Found link https://files.pythonhosted.org/packages/77/eb/6f5e7d09188ac1fedc1b20c5bb3c679302cda22398c49682f8f3213565db/nextflow-23.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.2 2024-12-11T20:23:57,642 Found link https://files.pythonhosted.org/packages/37/0f/cd4e2d76402ebd60994753df846a4581fe1cd2c5c8ecfad4a0758328edf9/nextflow-23.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.3 2024-12-11T20:23:57,642 Found link https://files.pythonhosted.org/packages/7f/a1/ef4e714fdc8de1cf27f285565feea47eec4c85b96fc9063a07fe8215ef83/nextflow-23.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.4 2024-12-11T20:23:57,643 Found link https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.0 2024-12-11T20:23:57,644 Found link https://files.pythonhosted.org/packages/83/af/626ea17fa51a5397849f286ffb2c88e661e1498078b337287c8deee86ba6/nextflow-23.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.1 2024-12-11T20:23:57,645 Found link https://files.pythonhosted.org/packages/c4/9b/9cfb11bf3e9f51644b177c1ef2c635b11e96aedea5a40fd5839d197de7bd/nextflow-24.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.1 2024-12-11T20:23:57,646 Found link https://files.pythonhosted.org/packages/e3/bd/c2bbb7c09b5c88d1521f40025c5ddec825b5c789f374242afbffba08c84b/nextflow-24.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.2 2024-12-11T20:23:57,647 Found link https://files.pythonhosted.org/packages/5d/f7/65b3d0d6efa2d1dc0a74295b0bafac940349fb553ff77aecc2b19341206c/nextflow-24.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.3 2024-12-11T20:23:57,648 Found link https://files.pythonhosted.org/packages/0e/b6/cecfb82e6f67273377507d12df3bed4ac8ddc31a5761c98ce8ab3edf4454/nextflow-24.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.4 2024-12-11T20:23:57,649 Found link https://files.pythonhosted.org/packages/29/52/547b169dda8bf4f6586ee7c81cb6a3fd74ac87ec0cf7d1f23afb417103b0/nextflow-24.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.0 2024-12-11T20:23:57,650 Found link https://files.pythonhosted.org/packages/bc/d7/bc5630f756cafca449c5417b0eb5f7681240355648ca5921dc58c7e070a8/nextflow-24.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.1 2024-12-11T20:23:57,651 Found link https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.2 2024-12-11T20:23:57,652 Fetching project page and analyzing links: https://www.piwheels.org/simple/nextflow/ 2024-12-11T20:23:57,654 Getting page https://www.piwheels.org/simple/nextflow/ 2024-12-11T20:23:57,655 Found index url https://www.piwheels.org/simple/ 2024-12-11T20:23:57,821 Fetched page https://www.piwheels.org/simple/nextflow/ as text/html 2024-12-11T20:23:57,826 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.10.1-py3-none-any.whl#sha256=18308c012437f7f062a471975eac531db34385ed7b3e54589bda05f7a7ce461b (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,827 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.10.0-py3-none-any.whl#sha256=fa91a2cbc9ab218f57b3c4e1d37b95d7bf9622251cc2e278a92594c457838317 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,828 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.4-py3-none-any.whl#sha256=dd8afff5397e3bd0f6f7bb2f50680177e7b244eb90f9b176391034e9ac648894 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,828 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.3-py3-none-any.whl#sha256=939e5cec991c7e0aa855382e5080b22a5a6d4e29ea2fe78489bc82c8efd54618 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,829 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.2-py3-none-any.whl#sha256=e7fec3dff6b4f186a445cb5cfc249c17ac0391558a134e26af1ff85c0e55d3ba (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,829 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.1-py3-none-any.whl#sha256=de56fffc2db65488a1756d1230de2fdf75ce97d44ab44bd42e5dcd0587b13987 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,830 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.10.1-py3-none-any.whl#sha256=81573f00e62309b377e56977d79c506407a4283adeb34ab3ccf025ee1b840b79 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,830 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.10.0-py3-none-any.whl#sha256=7d68961906a1c33d39660746da229605ecefc580b066c8458ebebf96e563549d (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,831 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.4-py3-none-any.whl#sha256=07d049d85a7b1f1772982e66a45e970378c1b3e4a0aa11e94bff54eea2facfaf (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,831 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.3-py3-none-any.whl#sha256=1d2114b09aec49a7701bb1480ca7ce83e23acd47cdb495a709384efc2a525948 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,832 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.2-py3-none-any.whl#sha256=2056f24035f07ee610923e7a8ec19e52b141789365e337ccf71e27a365a68ce6 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,833 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.1-py3-none-any.whl#sha256=c07e0059e657c9519b9cc0b41d127157c166bf9116bacb750aa5fbf8ef9e9a55 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,833 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.7-py3-none-any.whl#sha256=bd32f54d735936e85cc14b26070f88d5b86f2fda68079680e58d5dcd6472ecdd (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,834 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.6-py3-none-any.whl#sha256=10d80820a116271df8dd0c21f0373823dbf31f40715ebb305d3b85d49f39ad72 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,835 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.1-py3-none-any.whl#sha256=746fe26a0a4083913632e05683071cc2fe41d7780835714a38c1d44116ff9073 (from https://www.piwheels.org/simple/nextflow/) 2024-12-11T20:23:57,835 Skipping link: not a file: https://www.piwheels.org/simple/nextflow/ 2024-12-11T20:23:57,835 Skipping link: not a file: https://pypi.org/simple/nextflow/ 2024-12-11T20:23:57,857 Given no hashes to check 1 links for project 'nextflow': discarding no candidates 2024-12-11T20:23:57,858 Collecting nextflow==24.10.2 2024-12-11T20:23:57,861 Created temporary directory: /tmp/pip-unpack-5zfaxnd2 2024-12-11T20:23:58,086 Downloading nextflow-24.10.2.tar.gz (7.8 kB) 2024-12-11T20:23:58,114 Added nextflow==24.10.2 from https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz to build tracker '/tmp/pip-build-tracker-pu86c758' 2024-12-11T20:23:58,116 Running setup.py (path:/tmp/pip-wheel-ocn0mvr7/nextflow_e8e05d4749ab4a41a767a16467bd1f86/setup.py) egg_info for package nextflow 2024-12-11T20:23:58,117 Created temporary directory: /tmp/pip-pip-egg-info-_doa70af 2024-12-11T20:23:58,117 Preparing metadata (setup.py): started 2024-12-11T20:23:58,118 Running command python setup.py egg_info 2024-12-11T20:23:59,200 running egg_info 2024-12-11T20:23:59,230 creating /tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info 2024-12-11T20:23:59,231 writing /tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/PKG-INFO 2024-12-11T20:23:59,234 writing dependency_links to /tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/dependency_links.txt 2024-12-11T20:23:59,236 writing top-level names to /tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/top_level.txt 2024-12-11T20:23:59,237 writing manifest file '/tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/SOURCES.txt' 2024-12-11T20:23:59,320 reading manifest file '/tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/SOURCES.txt' 2024-12-11T20:23:59,323 writing manifest file '/tmp/pip-pip-egg-info-_doa70af/nextflow.egg-info/SOURCES.txt' 2024-12-11T20:23:59,433 Preparing metadata (setup.py): finished with status 'done' 2024-12-11T20:23:59,437 Source in /tmp/pip-wheel-ocn0mvr7/nextflow_e8e05d4749ab4a41a767a16467bd1f86 has version 24.10.2, which satisfies requirement nextflow==24.10.2 from https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz 2024-12-11T20:23:59,438 Removed nextflow==24.10.2 from https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz from build tracker '/tmp/pip-build-tracker-pu86c758' 2024-12-11T20:23:59,442 Created temporary directory: /tmp/pip-unpack-g0ki17_l 2024-12-11T20:23:59,443 Created temporary directory: /tmp/pip-unpack-l4c5bhr9 2024-12-11T20:23:59,444 Building wheels for collected packages: nextflow 2024-12-11T20:23:59,448 Created temporary directory: /tmp/pip-wheel-5v2wbzsh 2024-12-11T20:23:59,448 Building wheel for nextflow (setup.py): started 2024-12-11T20:23:59,450 Destination directory: /tmp/pip-wheel-5v2wbzsh 2024-12-11T20:23:59,450 Running command python setup.py bdist_wheel 2024-12-11T20:24:00,495 running bdist_wheel 2024-12-11T20:24:00,635 running build 2024-12-11T20:24:00,636 running build_scripts 2024-12-11T20:24:00,636 creating build/scripts-3.11 2024-12-11T20:24:00,639 copying launcher/nextflow -> build/scripts-3.11 2024-12-11T20:24:00,641 changing mode of build/scripts-3.11/nextflow from 644 to 755 2024-12-11T20:24:00,669 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-11T20:24:00,670 !! 2024-12-11T20:24:00,671 ******************************************************************************** 2024-12-11T20:24:00,671 Please avoid running ``setup.py`` directly. 2024-12-11T20:24:00,672 Instead, use pypa/build, pypa/installer or other 2024-12-11T20:24:00,672 standards-based tools. 2024-12-11T20:24:00,673 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-11T20:24:00,674 ******************************************************************************** 2024-12-11T20:24:00,675 !! 2024-12-11T20:24:00,675 self.initialize_options() 2024-12-11T20:24:00,698 installing to build/bdist.linux-armv7l/wheel 2024-12-11T20:24:00,699 running install 2024-12-11T20:24:00,723 running install_egg_info 2024-12-11T20:24:00,785 running egg_info 2024-12-11T20:24:00,817 writing nextflow.egg-info/PKG-INFO 2024-12-11T20:24:00,820 writing dependency_links to nextflow.egg-info/dependency_links.txt 2024-12-11T20:24:00,822 writing top-level names to nextflow.egg-info/top_level.txt 2024-12-11T20:24:00,850 reading manifest file 'nextflow.egg-info/SOURCES.txt' 2024-12-11T20:24:00,854 writing manifest file 'nextflow.egg-info/SOURCES.txt' 2024-12-11T20:24:00,857 Copying nextflow.egg-info to build/bdist.linux-armv7l/wheel/./nextflow-24.10.2-py3.11.egg-info 2024-12-11T20:24:00,865 running install_scripts 2024-12-11T20:24:00,866 creating build/bdist.linux-armv7l/wheel/nextflow-24.10.2.data/scripts 2024-12-11T20:24:00,868 copying build/scripts-3.11/nextflow -> build/bdist.linux-armv7l/wheel/nextflow-24.10.2.data/scripts 2024-12-11T20:24:00,870 changing mode of build/bdist.linux-armv7l/wheel/nextflow-24.10.2.data/scripts/nextflow to 755 2024-12-11T20:24:00,880 creating build/bdist.linux-armv7l/wheel/nextflow-24.10.2.dist-info/WHEEL 2024-12-11T20:24:00,882 creating '/tmp/pip-wheel-5v2wbzsh/nextflow-24.10.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-11T20:24:00,886 adding 'nextflow-24.10.2.data/scripts/nextflow' 2024-12-11T20:24:00,888 adding 'nextflow-24.10.2.dist-info/METADATA' 2024-12-11T20:24:00,889 adding 'nextflow-24.10.2.dist-info/WHEEL' 2024-12-11T20:24:00,890 adding 'nextflow-24.10.2.dist-info/top_level.txt' 2024-12-11T20:24:00,891 adding 'nextflow-24.10.2.dist-info/RECORD' 2024-12-11T20:24:00,892 removing build/bdist.linux-armv7l/wheel 2024-12-11T20:24:01,004 Building wheel for nextflow (setup.py): finished with status 'done' 2024-12-11T20:24:01,007 Created wheel for nextflow: filename=nextflow-24.10.2-py3-none-any.whl size=7928 sha256=4c9e56e2f1c6029aaa3283a369ff59b75839956b0eab52289593fb174690a066 2024-12-11T20:24:01,008 Stored in directory: /tmp/pip-ephem-wheel-cache-16raq_11/wheels/56/72/00/d60047a6ba7b88602c045f044baaf16a629dfdd736202eac50 2024-12-11T20:24:01,017 Successfully built nextflow 2024-12-11T20:24:01,020 Removed build tracker: '/tmp/pip-build-tracker-pu86c758'