2024-12-11T23:11:46,417 Created temporary directory: /tmp/pip-build-tracker-3pb___8m
2024-12-11T23:11:46,419 Initialized build tracking at /tmp/pip-build-tracker-3pb___8m
2024-12-11T23:11:46,419 Created build tracker: /tmp/pip-build-tracker-3pb___8m
2024-12-11T23:11:46,419 Entered build tracker: /tmp/pip-build-tracker-3pb___8m
2024-12-11T23:11:46,420 Created temporary directory: /tmp/pip-wheel-2pcnh4_o
2024-12-11T23:11:46,424 Created temporary directory: /tmp/pip-ephem-wheel-cache-__o2y3ka
2024-12-11T23:11:46,469 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-11T23:11:46,471 2 location(s) to search for versions of topaz-em:
2024-12-11T23:11:46,471 * https://pypi.org/simple/topaz-em/
2024-12-11T23:11:46,471 * https://www.piwheels.org/simple/topaz-em/
2024-12-11T23:11:46,472 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/
2024-12-11T23:11:46,473 Getting page https://pypi.org/simple/topaz-em/
2024-12-11T23:11:46,474 Found index url https://pypi.org/simple/
2024-12-11T23:11:46,699 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json
2024-12-11T23:11:46,704   Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0
2024-12-11T23:11:46,705   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,705   Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1
2024-12-11T23:11:46,706   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,706   Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2
2024-12-11T23:11:46,707   Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3
2024-12-11T23:11:46,708   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,709   Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4
2024-12-11T23:11:46,709   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,710   Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0
2024-12-11T23:11:46,711   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,711   Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5
2024-12-11T23:11:46,712   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,713   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,714   Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0
2024-12-11T23:11:46,714   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/9c/8d/7720e829913c8b02aa880a0cf34bec0b5c9e7d1af2812a6d237c7539b6d6/topaz_em-0.3.1-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-11T23:11:46,715   Found link https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.1
2024-12-11T23:11:46,715   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d9/f9/5954f56b438dd6f1f08554f0d4403027ebda5e424b4df9c9a9b1b38ea4f2/topaz_em-0.3.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2024-12-11T23:11:46,716   Found link https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.4
2024-12-11T23:11:46,717 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/
2024-12-11T23:11:46,718 Getting page https://www.piwheels.org/simple/topaz-em/
2024-12-11T23:11:46,719 Found index url https://www.piwheels.org/simple/
2024-12-11T23:11:46,884 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html
2024-12-11T23:11:46,888   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.1-py3-none-any.whl#sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,888   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,889   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,889   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,890   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,891   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,891   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,892   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,893   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-11T23:11:46,893 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/
2024-12-11T23:11:46,894 Skipping link: not a file: https://pypi.org/simple/topaz-em/
2024-12-11T23:11:46,914 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates
2024-12-11T23:11:46,915 Collecting topaz-em==0.3.4
2024-12-11T23:11:46,918   Created temporary directory: /tmp/pip-unpack-0jbcwjtb
2024-12-11T23:11:47,146   Downloading topaz_em-0.3.4.tar.gz (48.2 MB)
2024-12-11T23:11:57,593   Added topaz-em==0.3.4 from https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz to build tracker '/tmp/pip-build-tracker-3pb___8m'
2024-12-11T23:11:57,596   Running setup.py (path:/tmp/pip-wheel-2pcnh4_o/topaz-em_9b6445cc494342dc9999d429cf55079c/setup.py) egg_info for package topaz-em
2024-12-11T23:11:57,597   Created temporary directory: /tmp/pip-pip-egg-info-9nqp3car
2024-12-11T23:11:57,598   Preparing metadata (setup.py): started
2024-12-11T23:11:57,599   Running command python setup.py egg_info
2024-12-11T23:11:58,682   running egg_info
2024-12-11T23:11:58,709   creating /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info
2024-12-11T23:11:58,710   writing /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/PKG-INFO
2024-12-11T23:11:58,713   writing dependency_links to /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/dependency_links.txt
2024-12-11T23:11:58,714   writing entry points to /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/entry_points.txt
2024-12-11T23:11:58,716   writing requirements to /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/requires.txt
2024-12-11T23:11:58,717   writing top-level names to /tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/top_level.txt
2024-12-11T23:11:58,718   writing manifest file '/tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/SOURCES.txt'
2024-12-11T23:11:58,813   reading manifest file '/tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/SOURCES.txt'
2024-12-11T23:11:58,814   reading manifest template 'MANIFEST.in'
2024-12-11T23:11:58,818   adding license file 'LICENSE'
2024-12-11T23:11:58,822   writing manifest file '/tmp/pip-pip-egg-info-9nqp3car/topaz_em.egg-info/SOURCES.txt'
2024-12-11T23:11:58,931   Preparing metadata (setup.py): finished with status 'done'
2024-12-11T23:11:58,935   Source in /tmp/pip-wheel-2pcnh4_o/topaz-em_9b6445cc494342dc9999d429cf55079c has version 0.3.4, which satisfies requirement topaz-em==0.3.4 from https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz
2024-12-11T23:11:58,936   Removed topaz-em==0.3.4 from https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz from build tracker '/tmp/pip-build-tracker-3pb___8m'
2024-12-11T23:11:58,944 Created temporary directory: /tmp/pip-unpack-2v_rzkrz
2024-12-11T23:11:58,945 Created temporary directory: /tmp/pip-unpack-7fkz7cs7
2024-12-11T23:11:58,946 Building wheels for collected packages: topaz-em
2024-12-11T23:11:58,950   Created temporary directory: /tmp/pip-wheel-ycy316ih
2024-12-11T23:11:58,950   Building wheel for topaz-em (setup.py): started
2024-12-11T23:11:58,951   Destination directory: /tmp/pip-wheel-ycy316ih
2024-12-11T23:11:58,952   Running command python setup.py bdist_wheel
2024-12-11T23:11:59,964   running bdist_wheel
2024-12-11T23:12:00,095   running build
2024-12-11T23:12:00,096   running build_py
2024-12-11T23:12:00,125   creating build/lib/topaz
2024-12-11T23:12:00,128   copying topaz/__init__.py -> build/lib/topaz
2024-12-11T23:12:00,130   copying topaz/filters.py -> build/lib/topaz
2024-12-11T23:12:00,132   copying topaz/metrics.py -> build/lib/topaz
2024-12-11T23:12:00,134   copying topaz/mrc.py -> build/lib/topaz
2024-12-11T23:12:00,137   copying topaz/torch.py -> build/lib/topaz
2024-12-11T23:12:00,138   copying topaz/cuda.py -> build/lib/topaz
2024-12-11T23:12:00,140   copying topaz/denoise.py -> build/lib/topaz
2024-12-11T23:12:00,143   copying topaz/predict.py -> build/lib/topaz
2024-12-11T23:12:00,144   copying topaz/main.py -> build/lib/topaz
2024-12-11T23:12:00,147   copying topaz/training.py -> build/lib/topaz
2024-12-11T23:12:00,149   copying topaz/_version.py -> build/lib/topaz
2024-12-11T23:12:00,151   copying topaz/stats.py -> build/lib/topaz
2024-12-11T23:12:00,153   copying topaz/methods.py -> build/lib/topaz
2024-12-11T23:12:00,155   copying topaz/extract.py -> build/lib/topaz
2024-12-11T23:12:00,158   copying topaz/algorithms.py -> build/lib/topaz
2024-12-11T23:12:00,160   creating build/lib/topaz/utils
2024-12-11T23:12:00,161   copying topaz/utils/picks.py -> build/lib/topaz/utils
2024-12-11T23:12:00,164   copying topaz/utils/__init__.py -> build/lib/topaz/utils
2024-12-11T23:12:00,165   copying topaz/utils/conversions.py -> build/lib/topaz/utils
2024-12-11T23:12:00,167   copying topaz/utils/printing.py -> build/lib/topaz/utils
2024-12-11T23:12:00,169   copying topaz/utils/image.py -> build/lib/topaz/utils
2024-12-11T23:12:00,171   copying topaz/utils/star.py -> build/lib/topaz/utils
2024-12-11T23:12:00,173   copying topaz/utils/files.py -> build/lib/topaz/utils
2024-12-11T23:12:00,176   creating build/lib/topaz/model
2024-12-11T23:12:00,177   copying topaz/model/__init__.py -> build/lib/topaz/model
2024-12-11T23:12:00,179   copying topaz/model/classifier.py -> build/lib/topaz/model
2024-12-11T23:12:00,181   copying topaz/model/factory.py -> build/lib/topaz/model
2024-12-11T23:12:00,183   copying topaz/model/utils.py -> build/lib/topaz/model
2024-12-11T23:12:00,185   copying topaz/model/generative.py -> build/lib/topaz/model
2024-12-11T23:12:00,188   creating build/lib/topaz/denoising
2024-12-11T23:12:00,189   copying topaz/denoising/__init__.py -> build/lib/topaz/denoising
2024-12-11T23:12:00,190   copying topaz/denoising/models.py -> build/lib/topaz/denoising
2024-12-11T23:12:00,193   copying topaz/denoising/utils.py -> build/lib/topaz/denoising
2024-12-11T23:12:00,195   copying topaz/denoising/datasets.py -> build/lib/topaz/denoising
2024-12-11T23:12:00,198   creating build/lib/topaz/commands
2024-12-11T23:12:00,199   copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
2024-12-11T23:12:00,201   copying topaz/commands/__init__.py -> build/lib/topaz/commands
2024-12-11T23:12:00,203   copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
2024-12-11T23:12:00,205   copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
2024-12-11T23:12:00,206   copying topaz/commands/denoise3d.py -> build/lib/topaz/commands
2024-12-11T23:12:00,209   copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
2024-12-11T23:12:00,211   copying topaz/commands/preprocess.py -> build/lib/topaz/commands
2024-12-11T23:12:00,212   copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
2024-12-11T23:12:00,214   copying topaz/commands/split.py -> build/lib/topaz/commands
2024-12-11T23:12:00,216   copying topaz/commands/normalize.py -> build/lib/topaz/commands
2024-12-11T23:12:00,218   copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
2024-12-11T23:12:00,220   copying topaz/commands/segment.py -> build/lib/topaz/commands
2024-12-11T23:12:00,222   copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
2024-12-11T23:12:00,223   copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
2024-12-11T23:12:00,225   copying topaz/commands/denoise.py -> build/lib/topaz/commands
2024-12-11T23:12:00,228   copying topaz/commands/convert.py -> build/lib/topaz/commands
2024-12-11T23:12:00,230   copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
2024-12-11T23:12:00,232   copying topaz/commands/train.py -> build/lib/topaz/commands
2024-12-11T23:12:00,234   copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
2024-12-11T23:12:00,236   copying topaz/commands/downsample.py -> build/lib/topaz/commands
2024-12-11T23:12:00,238   copying topaz/commands/extract.py -> build/lib/topaz/commands
2024-12-11T23:12:00,240   copying topaz/commands/gui.py -> build/lib/topaz/commands
2024-12-11T23:12:00,242   creating build/lib/topaz/transform
2024-12-11T23:12:00,243   copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
2024-12-11T23:12:00,246   copying topaz/transform/__init__.py -> build/lib/topaz/transform
2024-12-11T23:12:00,248   creating build/lib/topaz/utils/data
2024-12-11T23:12:00,249   copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,251   copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,253   copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,255   copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,257   copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,259   copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,261   copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
2024-12-11T23:12:00,264   creating build/lib/topaz/model/features
2024-12-11T23:12:00,265   copying topaz/model/features/msnet.py -> build/lib/topaz/model/features
2024-12-11T23:12:00,267   copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
2024-12-11T23:12:00,269   copying topaz/model/features/basic.py -> build/lib/topaz/model/features
2024-12-11T23:12:00,271   copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
2024-12-11T23:12:00,273   copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
2024-12-11T23:12:00,275   running egg_info
2024-12-11T23:12:00,303   writing topaz_em.egg-info/PKG-INFO
2024-12-11T23:12:00,306   writing dependency_links to topaz_em.egg-info/dependency_links.txt
2024-12-11T23:12:00,307   writing entry points to topaz_em.egg-info/entry_points.txt
2024-12-11T23:12:00,308   writing requirements to topaz_em.egg-info/requires.txt
2024-12-11T23:12:00,310   writing top-level names to topaz_em.egg-info/top_level.txt
2024-12-11T23:12:00,349   reading manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-12-11T23:12:00,356   reading manifest template 'MANIFEST.in'
2024-12-11T23:12:00,358   adding license file 'LICENSE'
2024-12-11T23:12:00,364   writing manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-12-11T23:12:00,367   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration.
2024-12-11T23:12:00,367   !!

2024-12-11T23:12:00,368           ********************************************************************************
2024-12-11T23:12:00,369           ############################
2024-12-11T23:12:00,370           # Package would be ignored #
2024-12-11T23:12:00,370           ############################
2024-12-11T23:12:00,371           Python recognizes 'topaz.gui' as an importable package[^1],
2024-12-11T23:12:00,371           but it is absent from setuptools' `packages` configuration.

2024-12-11T23:12:00,372           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-11T23:12:00,373           package, please make sure that 'topaz.gui' is explicitly added
2024-12-11T23:12:00,373           to the `packages` configuration field.

2024-12-11T23:12:00,375           Alternatively, you can also rely on setuptools' discovery methods
2024-12-11T23:12:00,375           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-11T23:12:00,376           instead of `find_packages(...)`/`find:`).

2024-12-11T23:12:00,377           You can read more about "package discovery" on setuptools documentation page:

2024-12-11T23:12:00,379           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-11T23:12:00,380           If you don't want 'topaz.gui' to be distributed and are
2024-12-11T23:12:00,380           already explicitly excluding 'topaz.gui' via
2024-12-11T23:12:00,381           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-11T23:12:00,381           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-11T23:12:00,381           combination with a more fine grained `package-data` configuration.

2024-12-11T23:12:00,382           You can read more about "package data files" on setuptools documentation page:

2024-12-11T23:12:00,388           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-11T23:12:00,389           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-11T23:12:00,390                 even if it does not contain any `.py` files.
2024-12-11T23:12:00,390                 On the other hand, currently there is no concept of package data
2024-12-11T23:12:00,391                 directory, all directories are treated like packages.
2024-12-11T23:12:00,391           ********************************************************************************

2024-12-11T23:12:00,392   !!
2024-12-11T23:12:00,393     check.warn(importable)
2024-12-11T23:12:00,393   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration.
2024-12-11T23:12:00,394   !!

2024-12-11T23:12:00,395           ********************************************************************************
2024-12-11T23:12:00,395           ############################
2024-12-11T23:12:00,396           # Package would be ignored #
2024-12-11T23:12:00,396           ############################
2024-12-11T23:12:00,397           Python recognizes 'topaz.pretrained.denoise' as an importable package[^1],
2024-12-11T23:12:00,397           but it is absent from setuptools' `packages` configuration.

2024-12-11T23:12:00,399           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-11T23:12:00,399           package, please make sure that 'topaz.pretrained.denoise' is explicitly added
2024-12-11T23:12:00,400           to the `packages` configuration field.

2024-12-11T23:12:00,401           Alternatively, you can also rely on setuptools' discovery methods
2024-12-11T23:12:00,402           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-11T23:12:00,403           instead of `find_packages(...)`/`find:`).

2024-12-11T23:12:00,404           You can read more about "package discovery" on setuptools documentation page:

2024-12-11T23:12:00,409           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-11T23:12:00,431           If you don't want 'topaz.pretrained.denoise' to be distributed and are
2024-12-11T23:12:00,432           already explicitly excluding 'topaz.pretrained.denoise' via
2024-12-11T23:12:00,433           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-11T23:12:00,433           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-11T23:12:00,434           combination with a more fine grained `package-data` configuration.

2024-12-11T23:12:00,435           You can read more about "package data files" on setuptools documentation page:

2024-12-11T23:12:00,436           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-11T23:12:00,438           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-11T23:12:00,439                 even if it does not contain any `.py` files.
2024-12-11T23:12:00,439                 On the other hand, currently there is no concept of package data
2024-12-11T23:12:00,440                 directory, all directories are treated like packages.
2024-12-11T23:12:00,441           ********************************************************************************

2024-12-11T23:12:00,442   !!
2024-12-11T23:12:00,443     check.warn(importable)
2024-12-11T23:12:00,443   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration.
2024-12-11T23:12:00,444   !!

2024-12-11T23:12:00,445           ********************************************************************************
2024-12-11T23:12:00,445           ############################
2024-12-11T23:12:00,445           # Package would be ignored #
2024-12-11T23:12:00,446           ############################
2024-12-11T23:12:00,446           Python recognizes 'topaz.pretrained.detector' as an importable package[^1],
2024-12-11T23:12:00,447           but it is absent from setuptools' `packages` configuration.

2024-12-11T23:12:00,448           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-11T23:12:00,448           package, please make sure that 'topaz.pretrained.detector' is explicitly added
2024-12-11T23:12:00,449           to the `packages` configuration field.

2024-12-11T23:12:00,449           Alternatively, you can also rely on setuptools' discovery methods
2024-12-11T23:12:00,450           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-11T23:12:00,450           instead of `find_packages(...)`/`find:`).

2024-12-11T23:12:00,451           You can read more about "package discovery" on setuptools documentation page:

2024-12-11T23:12:00,452           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-11T23:12:00,453           If you don't want 'topaz.pretrained.detector' to be distributed and are
2024-12-11T23:12:00,454           already explicitly excluding 'topaz.pretrained.detector' via
2024-12-11T23:12:00,454           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-11T23:12:00,455           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-11T23:12:00,456           combination with a more fine grained `package-data` configuration.

2024-12-11T23:12:00,457           You can read more about "package data files" on setuptools documentation page:

2024-12-11T23:12:00,459           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-11T23:12:00,461           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-11T23:12:00,461                 even if it does not contain any `.py` files.
2024-12-11T23:12:00,462                 On the other hand, currently there is no concept of package data
2024-12-11T23:12:00,463                 directory, all directories are treated like packages.
2024-12-11T23:12:00,463           ********************************************************************************

2024-12-11T23:12:00,465   !!
2024-12-11T23:12:00,465     check.warn(importable)
2024-12-11T23:12:00,466   creating build/lib/topaz/gui
2024-12-11T23:12:00,466   copying topaz/gui/topaz.html -> build/lib/topaz/gui
2024-12-11T23:12:00,467   creating build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,467   copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,468   copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,468   copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,600   copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,785   copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,843   copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,910   copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-11T23:12:00,950   creating build/lib/topaz/pretrained/detector
2024-12-11T23:12:00,951   copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector
2024-12-11T23:12:00,982   copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector
2024-12-11T23:12:01,140   copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector
2024-12-11T23:12:01,172   copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector
2024-12-11T23:12:01,292   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-11T23:12:01,293   !!

2024-12-11T23:12:01,293           ********************************************************************************
2024-12-11T23:12:01,294           Please avoid running ``setup.py`` directly.
2024-12-11T23:12:01,295           Instead, use pypa/build, pypa/installer or other
2024-12-11T23:12:01,295           standards-based tools.

2024-12-11T23:12:01,296           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-11T23:12:01,297           ********************************************************************************

2024-12-11T23:12:01,298   !!
2024-12-11T23:12:01,298     self.initialize_options()
2024-12-11T23:12:01,319   installing to build/bdist.linux-armv7l/wheel
2024-12-11T23:12:01,320   running install
2024-12-11T23:12:01,344   running install_lib
2024-12-11T23:12:01,371   creating build/bdist.linux-armv7l/wheel
2024-12-11T23:12:01,373   creating build/bdist.linux-armv7l/wheel/topaz
2024-12-11T23:12:01,375   creating build/bdist.linux-armv7l/wheel/topaz/utils
2024-12-11T23:12:01,376   copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,378   copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,380   copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,382   copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,383   copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,386   creating build/bdist.linux-armv7l/wheel/topaz/utils/data
2024-12-11T23:12:01,387   copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,389   copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,391   copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,393   copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,395   copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,397   copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,400   copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-11T23:12:01,402   copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,404   copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-11T23:12:01,406   copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:01,408   creating build/bdist.linux-armv7l/wheel/topaz/model
2024-12-11T23:12:01,409   copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-11T23:12:01,411   copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-11T23:12:01,413   copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-11T23:12:01,415   copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-11T23:12:01,418   creating build/bdist.linux-armv7l/wheel/topaz/model/features
2024-12-11T23:12:01,419   copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-11T23:12:01,422   copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-11T23:12:01,423   copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-11T23:12:01,425   copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-11T23:12:01,427   copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-11T23:12:01,429   copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-11T23:12:01,431   copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:01,434   creating build/bdist.linux-armv7l/wheel/topaz/pretrained
2024-12-11T23:12:01,436   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector
2024-12-11T23:12:01,437   copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-11T23:12:01,470   copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-11T23:12:01,648   copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-11T23:12:01,672   copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-11T23:12:01,777   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
2024-12-11T23:12:01,778   copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:01,949   copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,034   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,126   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,201   copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,244   copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,283   copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-11T23:12:03,285   copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,287   copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,289   copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,291   copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,293   copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,296   creating build/bdist.linux-armv7l/wheel/topaz/denoising
2024-12-11T23:12:03,297   copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-11T23:12:03,298   copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-11T23:12:03,301   copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-11T23:12:03,303   copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-11T23:12:03,306   copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,308   copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,310   copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,314   creating build/bdist.linux-armv7l/wheel/topaz/commands
2024-12-11T23:12:03,315   copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,317   copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,319   copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,321   copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,323   copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,325   copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,328   copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,329   copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,331   copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,333   copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,335   copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,337   copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,340   copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,341   copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,343   copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,346   copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,349   copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,351   copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,353   copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,355   copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,357   copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,360   copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-11T23:12:03,362   copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,364   copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,367   creating build/bdist.linux-armv7l/wheel/topaz/transform
2024-12-11T23:12:03,368   copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-12-11T23:12:03,371   copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-12-11T23:12:03,373   copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,376   copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,379   copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-11T23:12:03,381   creating build/bdist.linux-armv7l/wheel/topaz/gui
2024-12-11T23:12:03,382   copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui
2024-12-11T23:12:03,394   running install_egg_info
2024-12-11T23:12:03,429   Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.4-py3.11.egg-info
2024-12-11T23:12:03,442   running install_scripts
2024-12-11T23:12:03,460   creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.4.dist-info/WHEEL
2024-12-11T23:12:03,463   creating '/tmp/pip-wheel-ycy316ih/topaz_em-0.3.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-11T23:12:03,466   adding 'topaz/__init__.py'
2024-12-11T23:12:03,467   adding 'topaz/_version.py'
2024-12-11T23:12:03,469   adding 'topaz/algorithms.py'
2024-12-11T23:12:03,470   adding 'topaz/cuda.py'
2024-12-11T23:12:03,473   adding 'topaz/denoise.py'
2024-12-11T23:12:03,476   adding 'topaz/extract.py'
2024-12-11T23:12:03,477   adding 'topaz/filters.py'
2024-12-11T23:12:03,479   adding 'topaz/main.py'
2024-12-11T23:12:03,481   adding 'topaz/methods.py'
2024-12-11T23:12:03,482   adding 'topaz/metrics.py'
2024-12-11T23:12:03,484   adding 'topaz/mrc.py'
2024-12-11T23:12:03,485   adding 'topaz/predict.py'
2024-12-11T23:12:03,487   adding 'topaz/stats.py'
2024-12-11T23:12:03,489   adding 'topaz/torch.py'
2024-12-11T23:12:03,493   adding 'topaz/training.py'
2024-12-11T23:12:03,495   adding 'topaz/commands/__init__.py'
2024-12-11T23:12:03,496   adding 'topaz/commands/boxes_to_coordinates.py'
2024-12-11T23:12:03,498   adding 'topaz/commands/convert.py'
2024-12-11T23:12:03,500   adding 'topaz/commands/coordinates_to_boxes.py'
2024-12-11T23:12:03,501   adding 'topaz/commands/coordinates_to_eman2_json.py'
2024-12-11T23:12:03,502   adding 'topaz/commands/coordinates_to_star.py'
2024-12-11T23:12:03,504   adding 'topaz/commands/denoise.py'
2024-12-11T23:12:03,506   adding 'topaz/commands/denoise3d.py'
2024-12-11T23:12:03,507   adding 'topaz/commands/downsample.py'
2024-12-11T23:12:03,509   adding 'topaz/commands/extract.py'
2024-12-11T23:12:03,510   adding 'topaz/commands/gui.py'
2024-12-11T23:12:03,512   adding 'topaz/commands/normalize.py'
2024-12-11T23:12:03,513   adding 'topaz/commands/particle_stack.py'
2024-12-11T23:12:03,514   adding 'topaz/commands/precision_recall_curve.py'
2024-12-11T23:12:03,516   adding 'topaz/commands/preprocess.py'
2024-12-11T23:12:03,517   adding 'topaz/commands/scale_coordinates.py'
2024-12-11T23:12:03,518   adding 'topaz/commands/segment.py'
2024-12-11T23:12:03,520   adding 'topaz/commands/split.py'
2024-12-11T23:12:03,521   adding 'topaz/commands/star_particles_threshold.py'
2024-12-11T23:12:03,522   adding 'topaz/commands/star_to_coordinates.py'
2024-12-11T23:12:03,524   adding 'topaz/commands/train.py'
2024-12-11T23:12:03,525   adding 'topaz/commands/train_test_split.py'
2024-12-11T23:12:03,527   adding 'topaz/denoising/__init__.py'
2024-12-11T23:12:03,530   adding 'topaz/denoising/datasets.py'
2024-12-11T23:12:03,533   adding 'topaz/denoising/models.py'
2024-12-11T23:12:03,534   adding 'topaz/denoising/utils.py'
2024-12-11T23:12:03,588   adding 'topaz/gui/topaz.html'
2024-12-11T23:12:03,593   adding 'topaz/model/__init__.py'
2024-12-11T23:12:03,594   adding 'topaz/model/classifier.py'
2024-12-11T23:12:03,596   adding 'topaz/model/factory.py'
2024-12-11T23:12:03,597   adding 'topaz/model/generative.py'
2024-12-11T23:12:03,599   adding 'topaz/model/utils.py'
2024-12-11T23:12:03,600   adding 'topaz/model/features/__init__.py'
2024-12-11T23:12:03,602   adding 'topaz/model/features/basic.py'
2024-12-11T23:12:03,604   adding 'topaz/model/features/densenet.py'
2024-12-11T23:12:03,606   adding 'topaz/model/features/msnet.py'
2024-12-11T23:12:03,608   adding 'topaz/model/features/resnet.py'
2024-12-11T23:12:03,611   adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav'
2024-12-11T23:12:03,916   adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav'
2024-12-11T23:12:05,727   adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav'
2024-12-11T23:12:07,593   adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav'
2024-12-11T23:12:08,266   adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav'
2024-12-11T23:12:08,979   adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav'
2024-12-11T23:12:09,412   adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav'
2024-12-11T23:12:09,707   adding 'topaz/pretrained/detector/resnet16_u32.sav'
2024-12-11T23:12:10,844   adding 'topaz/pretrained/detector/resnet16_u64.sav'
2024-12-11T23:12:11,091   adding 'topaz/pretrained/detector/resnet8_u32.sav'
2024-12-11T23:12:11,903   adding 'topaz/pretrained/detector/resnet8_u64.sav'
2024-12-11T23:12:11,938   adding 'topaz/transform/__init__.py'
2024-12-11T23:12:11,939   adding 'topaz/transform/scaled_gaussian_mixture.py'
2024-12-11T23:12:11,941   adding 'topaz/utils/__init__.py'
2024-12-11T23:12:11,943   adding 'topaz/utils/conversions.py'
2024-12-11T23:12:11,945   adding 'topaz/utils/files.py'
2024-12-11T23:12:11,946   adding 'topaz/utils/image.py'
2024-12-11T23:12:11,948   adding 'topaz/utils/picks.py'
2024-12-11T23:12:11,949   adding 'topaz/utils/printing.py'
2024-12-11T23:12:11,950   adding 'topaz/utils/star.py'
2024-12-11T23:12:11,952   adding 'topaz/utils/data/__init__.py'
2024-12-11T23:12:11,953   adding 'topaz/utils/data/coordinates.py'
2024-12-11T23:12:11,955   adding 'topaz/utils/data/loader.py'
2024-12-11T23:12:11,957   adding 'topaz/utils/data/memory_mapped_data.py'
2024-12-11T23:12:11,959   adding 'topaz/utils/data/partition.py'
2024-12-11T23:12:11,961   adding 'topaz/utils/data/sampler.py'
2024-12-11T23:12:11,962   adding 'topaz/utils/data/train_test_split_micrographs.py'
2024-12-11T23:12:11,969   adding 'topaz_em-0.3.4.dist-info/LICENSE'
2024-12-11T23:12:11,970   adding 'topaz_em-0.3.4.dist-info/METADATA'
2024-12-11T23:12:11,971   adding 'topaz_em-0.3.4.dist-info/WHEEL'
2024-12-11T23:12:11,972   adding 'topaz_em-0.3.4.dist-info/entry_points.txt'
2024-12-11T23:12:11,973   adding 'topaz_em-0.3.4.dist-info/top_level.txt'
2024-12-11T23:12:11,975   adding 'topaz_em-0.3.4.dist-info/RECORD'
2024-12-11T23:12:12,537   removing build/bdist.linux-armv7l/wheel
2024-12-11T23:12:12,695   Building wheel for topaz-em (setup.py): finished with status 'done'
2024-12-11T23:12:13,171   Created wheel for topaz-em: filename=topaz_em-0.3.4-py3-none-any.whl size=48203308 sha256=b962fae383a6452ef55bc823afec9fd34b6f6bbb57274fa304f3a4a234f23dd1
2024-12-11T23:12:13,172   Stored in directory: /tmp/pip-ephem-wheel-cache-__o2y3ka/wheels/54/f4/4f/25458a9865b7f2923df6758e670b0d1bbd1afe26d91bfa034b
2024-12-11T23:12:13,201 Successfully built topaz-em
2024-12-11T23:12:14,497 Removed build tracker: '/tmp/pip-build-tracker-3pb___8m'