2024-12-12T04:37:46,186 Created temporary directory: /tmp/pip-build-tracker-41vqndr5 2024-12-12T04:37:46,188 Initialized build tracking at /tmp/pip-build-tracker-41vqndr5 2024-12-12T04:37:46,189 Created build tracker: /tmp/pip-build-tracker-41vqndr5 2024-12-12T04:37:46,190 Entered build tracker: /tmp/pip-build-tracker-41vqndr5 2024-12-12T04:37:46,191 Created temporary directory: /tmp/pip-wheel-3mee3zns 2024-12-12T04:37:46,196 Created temporary directory: /tmp/pip-ephem-wheel-cache-a3u1si1k 2024-12-12T04:37:46,257 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-12T04:37:46,260 2 location(s) to search for versions of kssdutils: 2024-12-12T04:37:46,260 * https://pypi.org/simple/kssdutils/ 2024-12-12T04:37:46,260 * https://www.piwheels.org/simple/kssdutils/ 2024-12-12T04:37:46,262 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2024-12-12T04:37:46,263 Getting page https://pypi.org/simple/kssdutils/ 2024-12-12T04:37:46,266 Found index url https://pypi.org/simple/ 2024-12-12T04:37:46,495 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2024-12-12T04:37:46,498 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2024-12-12T04:37:46,498 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2024-12-12T04:37:46,499 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2024-12-12T04:37:46,499 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2024-12-12T04:37:46,500 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2024-12-12T04:37:46,501 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2024-12-12T04:37:46,502 Getting page https://www.piwheels.org/simple/kssdutils/ 2024-12-12T04:37:46,503 Found index url https://www.piwheels.org/simple/ 2024-12-12T04:37:46,665 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2024-12-12T04:37:46,670 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,670 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,671 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,672 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,672 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,673 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,674 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,674 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,675 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,675 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,676 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,676 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-12T04:37:46,677 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2024-12-12T04:37:46,677 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2024-12-12T04:37:46,697 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2024-12-12T04:37:46,699 Collecting kssdutils==1.0.5 2024-12-12T04:37:46,702 Created temporary directory: /tmp/pip-unpack-r6p1o7mx 2024-12-12T04:37:46,920 Downloading kssdutils-1.0.5.tar.gz (44 kB) 2024-12-12T04:37:47,022 Added kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-41vqndr5' 2024-12-12T04:37:47,024 Running setup.py (path:/tmp/pip-wheel-3mee3zns/kssdutils_798bd3919d1a40cb99ca74ed6dd52523/setup.py) egg_info for package kssdutils 2024-12-12T04:37:47,025 Created temporary directory: /tmp/pip-pip-egg-info-64toh7ch 2024-12-12T04:37:47,026 Preparing metadata (setup.py): started 2024-12-12T04:37:47,027 Running command python setup.py egg_info 2024-12-12T04:37:48,099 running egg_info 2024-12-12T04:37:48,142 creating /tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info 2024-12-12T04:37:48,144 writing /tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/PKG-INFO 2024-12-12T04:37:48,153 writing dependency_links to /tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/dependency_links.txt 2024-12-12T04:37:48,157 writing top-level names to /tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/top_level.txt 2024-12-12T04:37:48,161 writing manifest file '/tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/SOURCES.txt' 2024-12-12T04:37:48,328 reading manifest file '/tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/SOURCES.txt' 2024-12-12T04:37:48,333 reading manifest template 'MANIFEST.in' 2024-12-12T04:37:48,358 writing manifest file '/tmp/pip-pip-egg-info-64toh7ch/kssdutils.egg-info/SOURCES.txt' 2024-12-12T04:37:48,467 Preparing metadata (setup.py): finished with status 'done' 2024-12-12T04:37:48,471 Source in /tmp/pip-wheel-3mee3zns/kssdutils_798bd3919d1a40cb99ca74ed6dd52523 has version 1.0.5, which satisfies requirement kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz 2024-12-12T04:37:48,472 Removed kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-41vqndr5' 2024-12-12T04:37:48,476 Created temporary directory: /tmp/pip-unpack-cn7wbu1_ 2024-12-12T04:37:48,476 Created temporary directory: /tmp/pip-unpack-nlgudw80 2024-12-12T04:37:48,477 Building wheels for collected packages: kssdutils 2024-12-12T04:37:48,481 Created temporary directory: /tmp/pip-wheel-5gap2l_2 2024-12-12T04:37:48,482 Building wheel for kssdutils (setup.py): started 2024-12-12T04:37:48,483 Destination directory: /tmp/pip-wheel-5gap2l_2 2024-12-12T04:37:48,483 Running command python setup.py bdist_wheel 2024-12-12T04:37:49,493 running bdist_wheel 2024-12-12T04:37:49,625 running build 2024-12-12T04:37:49,625 running build_py 2024-12-12T04:37:49,654 creating build/lib.linux-armv7l-cpython-311 2024-12-12T04:37:49,656 copying kssdutils.py -> build/lib.linux-armv7l-cpython-311 2024-12-12T04:37:49,658 running egg_info 2024-12-12T04:37:49,685 writing kssdutils.egg-info/PKG-INFO 2024-12-12T04:37:49,688 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2024-12-12T04:37:49,690 writing top-level names to kssdutils.egg-info/top_level.txt 2024-12-12T04:37:49,718 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-12-12T04:37:49,722 reading manifest template 'MANIFEST.in' 2024-12-12T04:37:49,729 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-12-12T04:37:49,731 running build_ext 2024-12-12T04:37:50,191 building 'kssdtool' extension 2024-12-12T04:37:50,192 creating build/temp.linux-armv7l-cpython-311 2024-12-12T04:37:50,194 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-12-12T04:37:50,368 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-12-12T04:37:50,369 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-12T04:37:50,370 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-12-12T04:37:50,371 | ^ 2024-12-12T04:37:50,374 co2mco.c: In function ‘co2unitllmco’: 2024-12-12T04:37:50,375 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-12T04:37:50,376 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-12-12T04:37:50,377 | ^ 2024-12-12T04:37:51,084 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-12-12T04:37:51,460 command_composite.c: In function ‘get_species_abundance’: 2024-12-12T04:37:51,461 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-12-12T04:37:51,462 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-12-12T04:37:51,463 | ^~ 2024-12-12T04:37:51,463 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-12-12T04:37:51,464 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-12-12T04:37:51,465 | ^~ 2024-12-12T04:37:51,466 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:51,467 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-12T04:37:51,468 | ^ 2024-12-12T04:37:51,468 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:51,468 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-12T04:37:51,469 | ^~~~~~~~~~ 2024-12-12T04:37:51,469 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-12T04:37:51,470 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-12T04:37:51,470 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,471 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:51,471 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-12T04:37:51,472 | ^ 2024-12-12T04:37:51,473 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:51,473 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-12T04:37:51,474 | ^~~~~~~~~~ 2024-12-12T04:37:51,474 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-12T04:37:51,475 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-12T04:37:51,476 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,476 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:51,477 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,478 | ^ 2024-12-12T04:37:51,479 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:51,480 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,481 | ^~~~~~~~~~ 2024-12-12T04:37:51,481 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-12T04:37:51,482 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,483 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,483 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:51,484 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-12T04:37:51,485 | ^ 2024-12-12T04:37:51,485 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:51,486 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-12T04:37:51,487 | ^~~~~~~~~~ 2024-12-12T04:37:51,487 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-12T04:37:51,488 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-12T04:37:51,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,490 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:51,491 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,492 | ^ 2024-12-12T04:37:51,493 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:51,493 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,494 | ^~~~~~~~~~~~ 2024-12-12T04:37:51,495 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-12-12T04:37:51,495 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-12T04:37:51,496 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,718 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-12-12T04:37:51,956 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-12-12T04:37:51,958 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:51,958 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:51,959 | ~~^ 2024-12-12T04:37:51,959 | | 2024-12-12T04:37:51,960 | long unsigned int 2024-12-12T04:37:51,960 | %u 2024-12-12T04:37:51,961 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:51,961 | ~~~~~~~ 2024-12-12T04:37:51,962 | | 2024-12-12T04:37:51,963 | size_t {aka unsigned int} 2024-12-12T04:37:51,964 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:51,964 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:51,965 | ~~^ 2024-12-12T04:37:51,966 | | 2024-12-12T04:37:51,967 | long unsigned int 2024-12-12T04:37:51,967 | %u 2024-12-12T04:37:51,968 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:51,968 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-12T04:37:51,969 | ~~~~~~~~~ 2024-12-12T04:37:51,970 | | 2024-12-12T04:37:51,970 | size_t {aka unsigned int} 2024-12-12T04:37:51,971 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-12T04:37:51,972 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:51,973 | ~~^ 2024-12-12T04:37:51,973 | | 2024-12-12T04:37:51,974 | long unsigned int 2024-12-12T04:37:51,975 | %u 2024-12-12T04:37:51,975 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:51,976 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-12T04:37:51,976 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,977 | | 2024-12-12T04:37:51,977 | unsigned int 2024-12-12T04:37:51,978 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-12T04:37:51,978 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-12-12T04:37:51,978 | ^ 2024-12-12T04:37:51,979 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-12-12T04:37:51,979 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:51,980 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-12T04:37:51,980 | ~~^ ~~~~~~~ 2024-12-12T04:37:51,981 | | | 2024-12-12T04:37:51,981 | long unsigned int size_t {aka unsigned int} 2024-12-12T04:37:51,982 | %u 2024-12-12T04:37:51,982 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:51,983 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-12T04:37:51,984 | ~~^ 2024-12-12T04:37:51,985 | | 2024-12-12T04:37:51,985 | long unsigned int 2024-12-12T04:37:51,986 | %u 2024-12-12T04:37:51,986 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-12-12T04:37:51,987 | ~~~~~~~~~ 2024-12-12T04:37:51,987 | | 2024-12-12T04:37:51,988 | size_t {aka unsigned int} 2024-12-12T04:37:51,989 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-12T04:37:51,989 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-12T04:37:51,990 | ~~^ 2024-12-12T04:37:51,991 | | 2024-12-12T04:37:51,992 | long unsigned int 2024-12-12T04:37:51,993 | %u 2024-12-12T04:37:51,993 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-12-12T04:37:51,994 865 | (size_t) b * unitsz_distf_mapped); 2024-12-12T04:37:51,994 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,995 | | 2024-12-12T04:37:51,995 | unsigned int 2024-12-12T04:37:51,996 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-12-12T04:37:51,996 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-12-12T04:37:51,996 | ^~~~~~~ 2024-12-12T04:37:51,997 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-12-12T04:37:51,997 809 | struct stat cbd_fcode_stat; 2024-12-12T04:37:51,998 | ^~~~~~~~~~~~~~ 2024-12-12T04:37:51,998 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-12-12T04:37:51,998 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-12-12T04:37:51,999 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:51,999 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-12-12T04:37:52,000 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-12-12T04:37:52,000 | ^~~~~~~~~~~~~~~~~ 2024-12-12T04:37:52,001 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-12-12T04:37:52,002 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:52,002 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:52,003 | ~~^ 2024-12-12T04:37:52,004 | | 2024-12-12T04:37:52,004 | long unsigned int 2024-12-12T04:37:52,005 | %u 2024-12-12T04:37:52,006 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:52,006 | ~~~~~~~ 2024-12-12T04:37:52,007 | | 2024-12-12T04:37:52,008 | size_t {aka unsigned int} 2024-12-12T04:37:52,008 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:52,009 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:52,009 | ~~^ 2024-12-12T04:37:52,010 | | 2024-12-12T04:37:52,011 | long unsigned int 2024-12-12T04:37:52,011 | %u 2024-12-12T04:37:52,012 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:52,013 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-12T04:37:52,014 | ~~~~~~~~~ 2024-12-12T04:37:52,015 | | 2024-12-12T04:37:52,015 | size_t {aka unsigned int} 2024-12-12T04:37:52,016 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-12T04:37:52,016 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-12T04:37:52,017 | ~~^ 2024-12-12T04:37:52,017 | | 2024-12-12T04:37:52,018 | long unsigned int 2024-12-12T04:37:52,018 | %u 2024-12-12T04:37:52,019 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-12T04:37:52,019 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-12T04:37:52,020 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:52,020 | | 2024-12-12T04:37:52,021 | unsigned int 2024-12-12T04:37:52,021 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,022 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-12-12T04:37:52,022 | ^ 2024-12-12T04:37:52,023 command_dist.c: In function ‘mco_co_dist_core’: 2024-12-12T04:37:52,023 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-12T04:37:52,024 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-12-12T04:37:52,025 | ^ 2024-12-12T04:37:52,026 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-12-12T04:37:52,026 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,027 1239 | for (int rid = 0; rid < ref_num; rid++) 2024-12-12T04:37:52,028 | ^ 2024-12-12T04:37:52,028 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,029 1245 | for (int rid = 0; rid < ref_num; rid++) { 2024-12-12T04:37:52,030 | ^ 2024-12-12T04:37:52,033 command_dist.c: In function ‘dist_print_nobin’: 2024-12-12T04:37:52,034 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,035 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-12-12T04:37:52,036 | ^ 2024-12-12T04:37:52,038 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,038 1356 | for (int rid = 0; rid < ref_num; rid++) { 2024-12-12T04:37:52,039 | ^ 2024-12-12T04:37:52,041 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-12T04:37:52,042 1382 | for (int rid = 0; rid < ref_num; rid++) 2024-12-12T04:37:52,042 | ^ 2024-12-12T04:37:52,404 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-12-12T04:37:52,405 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-12-12T04:37:52,405 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-12-12T04:37:52,406 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:52,407 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2024-12-12T04:37:52,407 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-12-12T04:37:52,408 | ^~~~~~~~~~~~ 2024-12-12T04:37:53,247 command_dist.c: In function ‘get_dim_shuffle’: 2024-12-12T04:37:53,247 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-12-12T04:37:53,248 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-12-12T04:37:53,248 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:53,249 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-12-12T04:37:53,250 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-12-12T04:37:53,250 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,153 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-12-12T04:37:54,154 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,154 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,155 | ^~ ~~~~~~~~~ 2024-12-12T04:37:54,155 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-12T04:37:54,156 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,157 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,158 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,159 | ^~~~~~~~~~~~~~~ 2024-12-12T04:37:54,159 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-12T04:37:54,160 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,161 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,162 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,162 | ^~~~~~~~~~~ 2024-12-12T04:37:54,163 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:54,164 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,164 | ^~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,166 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-12-12T04:37:54,166 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,167 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,168 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,169 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,170 | ^~~~~ 2024-12-12T04:37:54,170 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:54,171 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,171 | ^~~~~~~~~~~ 2024-12-12T04:37:54,172 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-12T04:37:54,172 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,173 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,405 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-12-12T04:37:54,406 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,406 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,407 | ^~ ~~~~~~~~~ 2024-12-12T04:37:54,407 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-12T04:37:54,407 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,408 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,408 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,409 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,409 | ^~~~~~~~~~~~~~~ 2024-12-12T04:37:54,410 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-12T04:37:54,411 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,411 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,412 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,413 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-12T04:37:54,413 | ^~~~~~~~~~~~~ 2024-12-12T04:37:54,414 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-12T04:37:54,415 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-12T04:37:54,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,416 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,416 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-12T04:37:54,417 | ^ 2024-12-12T04:37:54,418 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2024-12-12T04:37:54,418 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-12T04:37:54,419 | ^~~~~~~~~~ 2024-12-12T04:37:54,420 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-12-12T04:37:54,421 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-12T04:37:54,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,422 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,423 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-12T04:37:54,424 | ^ 2024-12-12T04:37:54,424 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2024-12-12T04:37:54,425 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-12T04:37:54,425 | ^~~~~~~~~~ 2024-12-12T04:37:54,426 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-12-12T04:37:54,427 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-12T04:37:54,427 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,684 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-12-12T04:37:54,685 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,685 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,686 | ^~ ~~~~~~~~~ 2024-12-12T04:37:54,686 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-12T04:37:54,687 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-12T04:37:54,687 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,687 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,688 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,689 | ^~~~~~~~~~~~~~~ 2024-12-12T04:37:54,689 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-12T04:37:54,690 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-12T04:37:54,690 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,691 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,692 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-12T04:37:54,693 | ^~~~~~~~~~~~~ 2024-12-12T04:37:54,693 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-12T04:37:54,694 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-12T04:37:54,695 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,695 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,696 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,696 | ^~~~~~~~~~~ 2024-12-12T04:37:54,697 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:54,698 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,698 | ^~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,699 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-12-12T04:37:54,699 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-12T04:37:54,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,701 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-12T04:37:54,702 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,702 | ^~~~~ 2024-12-12T04:37:54,703 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:54,704 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,704 | ^~~~~~~~~~~ 2024-12-12T04:37:54,705 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-12T04:37:54,705 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-12T04:37:54,706 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,979 command_dist.c: In function ‘combine_queries’: 2024-12-12T04:37:54,981 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:54,981 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-12-12T04:37:54,982 | ^ 2024-12-12T04:37:54,983 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:54,983 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-12-12T04:37:54,983 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,984 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:54,985 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-12-12T04:37:54,985 | ^ 2024-12-12T04:37:54,986 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:54,987 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-12-12T04:37:54,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:54,989 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:54,990 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-12-12T04:37:54,990 | ^~ ~~~~~~~~ 2024-12-12T04:37:54,991 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-12T04:37:54,992 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-12-12T04:37:54,992 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:55,469 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-12-12T04:37:55,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-12-12T04:37:55,812 command_set.c: In function ‘sketch_operate’: 2024-12-12T04:37:55,813 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-12T04:37:55,813 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-12-12T04:37:55,814 | ^ 2024-12-12T04:37:55,827 command_set.c: In function ‘combin_subset_pans’: 2024-12-12T04:37:55,828 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-12-12T04:37:55,828 457 | free(co_dstat_fpath); 2024-12-12T04:37:55,829 | ^~~~~~~~~~~~~~ 2024-12-12T04:37:55,830 In file included from kssdheaders/global_basic.h:159, 2024-12-12T04:37:55,830 from command_set.c:15: 2024-12-12T04:37:55,831 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-12-12T04:37:55,831 568 | extern void free (void *__ptr) __THROW; 2024-12-12T04:37:55,831 | ~~~~~~^~~~~ 2024-12-12T04:37:55,837 command_set.c: In function ‘grouping_genomes’: 2024-12-12T04:37:55,838 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-12-12T04:37:55,838 562 | free(co_dstat_fpath); 2024-12-12T04:37:55,839 | ^~~~~~~~~~~~~~ 2024-12-12T04:37:55,839 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-12-12T04:37:55,840 568 | extern void free (void *__ptr) __THROW; 2024-12-12T04:37:55,840 | ~~~~~~^~~~~ 2024-12-12T04:37:56,007 command_set.c: In function ‘sketch_union’: 2024-12-12T04:37:56,008 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,008 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,009 | ^ 2024-12-12T04:37:56,009 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,010 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,011 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,012 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,012 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,013 command_set.c:82:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,014 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,014 | ^~~~~~~~~~ 2024-12-12T04:37:56,015 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,016 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,016 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,017 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,018 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-12T04:37:56,019 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,019 command_set.c:92:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,020 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-12T04:37:56,021 | ^~~~~~~~~~ 2024-12-12T04:37:56,021 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-12T04:37:56,022 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-12T04:37:56,023 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,149 command_set.c: In function ‘sketch_operate’: 2024-12-12T04:37:56,149 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,150 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-12T04:37:56,151 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,151 command_set.c:153:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,152 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-12T04:37:56,153 | ^~~~~~~~~~ 2024-12-12T04:37:56,153 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-12T04:37:56,154 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-12T04:37:56,154 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,154 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,155 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-12T04:37:56,155 | ^~ ~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,156 command_set.c:155:29: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,156 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-12T04:37:56,157 | ^~~~~~~~~~ 2024-12-12T04:37:56,157 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-12-12T04:37:56,158 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-12T04:37:56,158 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,159 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,159 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,160 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,160 command_set.c:165:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,161 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,162 | ^~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,162 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,163 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,163 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,164 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,165 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,165 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,166 command_set.c:169:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,167 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,167 | ^~~~~~~~~~ 2024-12-12T04:37:56,168 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,168 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-12T04:37:56,169 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,170 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,170 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,171 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,172 command_set.c:174:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,173 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,174 | ^~~~~~~~~~ 2024-12-12T04:37:56,174 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,175 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,175 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,176 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,176 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,176 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,177 command_set.c:187:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,177 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,178 | ^~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,178 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,179 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-12T04:37:56,179 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,180 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,180 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,181 | ^ 2024-12-12T04:37:56,182 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,183 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,183 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,337 command_set.c: In function ‘uniq_sketch_union’: 2024-12-12T04:37:56,338 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,338 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-12-12T04:37:56,339 | ^ 2024-12-12T04:37:56,340 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-12-12T04:37:56,340 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-12-12T04:37:56,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,342 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,343 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,343 | ^ 2024-12-12T04:37:56,344 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,345 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,345 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,346 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,347 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,347 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,348 command_set.c:247:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,349 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,349 | ^~~~~~~~~~ 2024-12-12T04:37:56,350 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,351 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-12T04:37:56,351 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,352 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,352 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-12T04:37:56,353 | ^~ ~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,353 command_set.c:259:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,354 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-12T04:37:56,354 | ^~~~~~~~~~ 2024-12-12T04:37:56,355 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-12-12T04:37:56,355 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-12T04:37:56,355 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,483 command_set.c: In function ‘combin_pans’: 2024-12-12T04:37:56,484 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,484 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,484 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,485 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2024-12-12T04:37:56,486 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,487 | ^~~~~~~~~~ 2024-12-12T04:37:56,487 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-12-12T04:37:56,488 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,489 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,490 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,491 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,491 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2024-12-12T04:37:56,492 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,493 | ^~~~~~~~~~ 2024-12-12T04:37:56,493 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-12-12T04:37:56,494 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,494 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,495 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,496 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,496 | ^ 2024-12-12T04:37:56,497 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,498 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,499 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,700 command_set.c: In function ‘combin_subset_pans’: 2024-12-12T04:37:56,701 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,702 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,702 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,703 command_set.c:469:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,703 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,704 | ^~~~~~~~~~ 2024-12-12T04:37:56,704 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,704 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,705 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,705 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,706 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,706 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,707 command_set.c:475:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,707 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,708 | ^~~~~~~~~~ 2024-12-12T04:37:56,708 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,708 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,709 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,710 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,711 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,711 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,712 command_set.c:481:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,713 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,714 | ^~~~~~~~~~ 2024-12-12T04:37:56,714 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,715 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,716 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,716 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,717 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,717 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,718 command_set.c:512:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,718 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,719 | ^~~~~~~~~~ 2024-12-12T04:37:56,720 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,720 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,721 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,722 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,722 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,723 | ^ 2024-12-12T04:37:56,724 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,724 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,725 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,946 command_set.c: In function ‘grouping_genomes’: 2024-12-12T04:37:56,946 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,947 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,947 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,948 command_set.c:574:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,948 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,949 | ^~~~~~~~~~ 2024-12-12T04:37:56,949 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,950 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-12T04:37:56,950 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,951 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,951 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,952 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,952 command_set.c:580:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,953 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,953 | ^~~~~~~~~~ 2024-12-12T04:37:56,954 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,955 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-12T04:37:56,955 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,956 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,956 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,957 | ^~ ~~~~~~~~~~~ 2024-12-12T04:37:56,958 command_set.c:612:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,959 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,959 | ^~~~~~~~~~ 2024-12-12T04:37:56,960 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-12T04:37:56,961 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-12T04:37:56,961 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,962 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-12T04:37:56,962 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,963 | ^~ ~~~~~~~~~~ 2024-12-12T04:37:56,964 command_set.c:634:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-12T04:37:56,964 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,965 | ^~~~~~~~~~ 2024-12-12T04:37:56,966 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-12T04:37:56,967 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-12T04:37:56,968 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:56,968 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-12T04:37:56,968 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,969 | ^ 2024-12-12T04:37:56,969 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-12T04:37:56,970 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-12T04:37:56,970 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-12T04:37:57,242 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-12-12T04:37:57,555 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-12-12T04:37:57,753 global_basic.c: In function ‘organize_infile_list’: 2024-12-12T04:37:57,754 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-12-12T04:37:57,754 195 | while (isspace(*buf)) buf++; 2024-12-12T04:37:57,755 | ^~~~~~~ 2024-12-12T04:37:57,756 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-12-12T04:37:57,756 34 | #include 2024-12-12T04:37:57,757 +++ |+#include 2024-12-12T04:37:57,758 35 | 2024-12-12T04:37:57,759 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:57,760 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-12-12T04:37:57,760 | ~~^ 2024-12-12T04:37:57,761 | | 2024-12-12T04:37:57,762 | long unsigned int 2024-12-12T04:37:57,763 | %u 2024-12-12T04:37:57,764 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-12-12T04:37:57,764 | ~~~~~~~~~~~ 2024-12-12T04:37:57,765 | | 2024-12-12T04:37:57,766 | size_t {aka unsigned int} 2024-12-12T04:37:57,767 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-12T04:37:57,768 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-12-12T04:37:57,769 | ~~^ 2024-12-12T04:37:57,769 | | 2024-12-12T04:37:57,770 | long unsigned int 2024-12-12T04:37:57,771 | %u 2024-12-12T04:37:57,772 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-12-12T04:37:57,772 | ~~~~~~~~~~~ 2024-12-12T04:37:57,773 | | 2024-12-12T04:37:57,774 | size_t {aka unsigned int} 2024-12-12T04:37:58,520 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-12-12T04:37:58,697 iseq2comem.c: In function ‘reads2mco’: 2024-12-12T04:37:58,697 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,698 156 | if (base > TL) { 2024-12-12T04:37:58,698 | ^ 2024-12-12T04:37:58,699 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,699 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,700 | ^~ 2024-12-12T04:37:58,700 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,701 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,701 | ^ 2024-12-12T04:37:58,704 iseq2comem.c: In function ‘fasta2co’: 2024-12-12T04:37:58,704 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,705 239 | if (base > TL) { 2024-12-12T04:37:58,706 | ^ 2024-12-12T04:37:58,706 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,707 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,708 | ^~ 2024-12-12T04:37:58,708 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,709 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,710 | ^ 2024-12-12T04:37:58,710 iseq2comem.c: In function ‘fastq2co’: 2024-12-12T04:37:58,711 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-12-12T04:37:58,712 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-12-12T04:37:58,712 | ^~ 2024-12-12T04:37:58,713 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,714 318 | if (base > TL) { 2024-12-12T04:37:58,714 | ^ 2024-12-12T04:37:58,715 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,715 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,716 | ^~ 2024-12-12T04:37:58,717 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,718 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,719 | ^ 2024-12-12T04:37:58,719 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,720 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-12-12T04:37:58,720 | ^ 2024-12-12T04:37:58,721 iseq2comem.c: In function ‘fastq2koc’: 2024-12-12T04:37:58,721 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,722 402 | if (base > TL) { 2024-12-12T04:37:58,722 | ^ 2024-12-12T04:37:58,723 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,723 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,724 | ^~ 2024-12-12T04:37:58,724 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,725 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,726 | ^ 2024-12-12T04:37:58,727 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-12-12T04:37:58,728 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,729 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,729 | ^~ 2024-12-12T04:37:58,730 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-12T04:37:58,731 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-12T04:37:58,732 | ^ 2024-12-12T04:38:00,078 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-12-12T04:38:00,133 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-12-12T04:38:00,254 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-12-12T04:38:00,642 pykssd.c: In function ‘py_dist_dispatch’: 2024-12-12T04:38:00,643 pykssd.c:329:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-12-12T04:38:00,644 329 | int state1 = dist_dispatch(&dist_opt_val1); 2024-12-12T04:38:00,644 | ^~~~~~ 2024-12-12T04:38:00,645 pykssd.c:386:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-12-12T04:38:00,646 386 | int state2 = dist_dispatch(&dist_opt_val2); 2024-12-12T04:38:00,647 | ^~~~~~ 2024-12-12T04:38:00,647 pykssd.c:510:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-12-12T04:38:00,648 510 | int state4 = dist_dispatch(&dist_opt_val4); 2024-12-12T04:38:00,649 | ^~~~~~ 2024-12-12T04:38:01,290 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-12-12T04:38:01,459 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-12T04:38:01,460 !! 2024-12-12T04:38:01,461 ******************************************************************************** 2024-12-12T04:38:01,461 Please avoid running ``setup.py`` directly. 2024-12-12T04:38:01,462 Instead, use pypa/build, pypa/installer or other 2024-12-12T04:38:01,462 standards-based tools. 2024-12-12T04:38:01,463 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-12T04:38:01,463 ******************************************************************************** 2024-12-12T04:38:01,464 !! 2024-12-12T04:38:01,465 self.initialize_options() 2024-12-12T04:38:01,489 installing to build/bdist.linux-armv7l/wheel 2024-12-12T04:38:01,490 running install 2024-12-12T04:38:01,514 running install_lib 2024-12-12T04:38:01,542 creating build/bdist.linux-armv7l/wheel 2024-12-12T04:38:01,544 copying build/lib.linux-armv7l-cpython-311/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2024-12-12T04:38:01,546 copying build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-12-12T04:38:01,557 running install_egg_info 2024-12-12T04:38:01,590 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.0.5-py3.11.egg-info 2024-12-12T04:38:01,601 running install_scripts 2024-12-12T04:38:01,655 creating build/bdist.linux-armv7l/wheel/kssdutils-1.0.5.dist-info/WHEEL 2024-12-12T04:38:01,658 creating '/tmp/pip-wheel-5gap2l_2/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-12T04:38:01,741 adding 'kssdtool.cpython-311-arm-linux-gnueabihf.so' 2024-12-12T04:38:01,745 adding 'kssdutils.py' 2024-12-12T04:38:01,747 adding 'kssdutils-1.0.5.dist-info/METADATA' 2024-12-12T04:38:01,748 adding 'kssdutils-1.0.5.dist-info/WHEEL' 2024-12-12T04:38:01,749 adding 'kssdutils-1.0.5.dist-info/dependency_links.txt' 2024-12-12T04:38:01,750 adding 'kssdutils-1.0.5.dist-info/top_level.txt' 2024-12-12T04:38:01,751 adding 'kssdutils-1.0.5.dist-info/RECORD' 2024-12-12T04:38:01,754 removing build/bdist.linux-armv7l/wheel 2024-12-12T04:38:01,900 Building wheel for kssdutils (setup.py): finished with status 'done' 2024-12-12T04:38:01,904 Created wheel for kssdutils: filename=kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl size=178605 sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 2024-12-12T04:38:01,905 Stored in directory: /tmp/pip-ephem-wheel-cache-a3u1si1k/wheels/b6/ba/7f/d53c1bc401cb289ba550d931640d07c1731fb0a4342e416349 2024-12-12T04:38:01,914 Successfully built kssdutils 2024-12-12T04:38:01,923 Removed build tracker: '/tmp/pip-build-tracker-41vqndr5'