2024-12-13T23:11:53,978 Created temporary directory: /tmp/pip-build-tracker-tiq3r_xt
2024-12-13T23:11:53,980 Initialized build tracking at /tmp/pip-build-tracker-tiq3r_xt
2024-12-13T23:11:53,980 Created build tracker: /tmp/pip-build-tracker-tiq3r_xt
2024-12-13T23:11:53,981 Entered build tracker: /tmp/pip-build-tracker-tiq3r_xt
2024-12-13T23:11:53,982 Created temporary directory: /tmp/pip-wheel-x2hx_dwg
2024-12-13T23:11:53,985 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ulihc3v
2024-12-13T23:11:54,030 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-12-13T23:11:54,032 2 location(s) to search for versions of topaz-em:
2024-12-13T23:11:54,032 * https://pypi.org/simple/topaz-em/
2024-12-13T23:11:54,032 * https://www.piwheels.org/simple/topaz-em/
2024-12-13T23:11:54,033 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/
2024-12-13T23:11:54,034 Getting page https://pypi.org/simple/topaz-em/
2024-12-13T23:11:54,035 Found index url https://pypi.org/simple/
2024-12-13T23:11:54,260 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json
2024-12-13T23:11:54,265   Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0
2024-12-13T23:11:54,266   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,267   Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1
2024-12-13T23:11:54,267   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,268   Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2
2024-12-13T23:11:54,269   Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3
2024-12-13T23:11:54,269   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,270   Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4
2024-12-13T23:11:54,271   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,271   Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0
2024-12-13T23:11:54,272   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,273   Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5
2024-12-13T23:11:54,273   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,274   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,275   Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0
2024-12-13T23:11:54,275   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/9c/8d/7720e829913c8b02aa880a0cf34bec0b5c9e7d1af2812a6d237c7539b6d6/topaz_em-0.3.1-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2024-12-13T23:11:54,276   Found link https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.1
2024-12-13T23:11:54,276   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d9/f9/5954f56b438dd6f1f08554f0d4403027ebda5e424b4df9c9a9b1b38ea4f2/topaz_em-0.3.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2024-12-13T23:11:54,277   Found link https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.4
2024-12-13T23:11:54,278   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/bf/cf/c95a25d77ce773c6793924ebf1773b09cc0d53273ffc0924b03d5cb19910/topaz_em-0.3.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2024-12-13T23:11:54,279   Found link https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.5
2024-12-13T23:11:54,280 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/
2024-12-13T23:11:54,281 Getting page https://www.piwheels.org/simple/topaz-em/
2024-12-13T23:11:54,282 Found index url https://www.piwheels.org/simple/
2024-12-13T23:11:54,450 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html
2024-12-13T23:11:54,454   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.4-py3-none-any.whl#sha256=b962fae383a6452ef55bc823afec9fd34b6f6bbb57274fa304f3a4a234f23dd1 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12)
2024-12-13T23:11:54,454   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.1-py3-none-any.whl#sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,455   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,456   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,456   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,457   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,458   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,458   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,459   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,459   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/)
2024-12-13T23:11:54,460 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/
2024-12-13T23:11:54,460 Skipping link: not a file: https://pypi.org/simple/topaz-em/
2024-12-13T23:11:54,480 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates
2024-12-13T23:11:54,482 Collecting topaz-em==0.3.5
2024-12-13T23:11:54,484   Created temporary directory: /tmp/pip-unpack-_1q7y9vq
2024-12-13T23:11:54,718   Downloading topaz_em-0.3.5.tar.gz (48.2 MB)
2024-12-13T23:12:05,034   Added topaz-em==0.3.5 from https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz to build tracker '/tmp/pip-build-tracker-tiq3r_xt'
2024-12-13T23:12:05,037   Running setup.py (path:/tmp/pip-wheel-x2hx_dwg/topaz-em_1d29a5fb438c40ff8655387272a95843/setup.py) egg_info for package topaz-em
2024-12-13T23:12:05,038   Created temporary directory: /tmp/pip-pip-egg-info-_kpr7yr3
2024-12-13T23:12:05,039   Preparing metadata (setup.py): started
2024-12-13T23:12:05,041   Running command python setup.py egg_info
2024-12-13T23:12:06,405   running egg_info
2024-12-13T23:12:06,436   creating /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info
2024-12-13T23:12:06,437   writing /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/PKG-INFO
2024-12-13T23:12:06,443   writing dependency_links to /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/dependency_links.txt
2024-12-13T23:12:06,445   writing entry points to /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/entry_points.txt
2024-12-13T23:12:06,447   writing requirements to /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/requires.txt
2024-12-13T23:12:06,448   writing top-level names to /tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/top_level.txt
2024-12-13T23:12:06,450   writing manifest file '/tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/SOURCES.txt'
2024-12-13T23:12:06,550   reading manifest file '/tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/SOURCES.txt'
2024-12-13T23:12:06,552   reading manifest template 'MANIFEST.in'
2024-12-13T23:12:06,556   adding license file 'LICENSE'
2024-12-13T23:12:06,561   writing manifest file '/tmp/pip-pip-egg-info-_kpr7yr3/topaz_em.egg-info/SOURCES.txt'
2024-12-13T23:12:06,669   Preparing metadata (setup.py): finished with status 'done'
2024-12-13T23:12:06,673   Source in /tmp/pip-wheel-x2hx_dwg/topaz-em_1d29a5fb438c40ff8655387272a95843 has version 0.3.5, which satisfies requirement topaz-em==0.3.5 from https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz
2024-12-13T23:12:06,674   Removed topaz-em==0.3.5 from https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz from build tracker '/tmp/pip-build-tracker-tiq3r_xt'
2024-12-13T23:12:06,681 Created temporary directory: /tmp/pip-unpack-rbpy2vig
2024-12-13T23:12:06,682 Created temporary directory: /tmp/pip-unpack-6a9z3eu8
2024-12-13T23:12:06,683 Building wheels for collected packages: topaz-em
2024-12-13T23:12:06,689   Created temporary directory: /tmp/pip-wheel-ua3pl8m1
2024-12-13T23:12:06,690   Building wheel for topaz-em (setup.py): started
2024-12-13T23:12:06,691   Destination directory: /tmp/pip-wheel-ua3pl8m1
2024-12-13T23:12:06,691   Running command python setup.py bdist_wheel
2024-12-13T23:12:07,769   running bdist_wheel
2024-12-13T23:12:07,908   running build
2024-12-13T23:12:07,909   running build_py
2024-12-13T23:12:07,940   creating build/lib/topaz
2024-12-13T23:12:07,942   copying topaz/extract.py -> build/lib/topaz
2024-12-13T23:12:07,945   copying topaz/mrc.py -> build/lib/topaz
2024-12-13T23:12:07,948   copying topaz/metrics.py -> build/lib/topaz
2024-12-13T23:12:07,951   copying topaz/algorithms.py -> build/lib/topaz
2024-12-13T23:12:07,953   copying topaz/filters.py -> build/lib/topaz
2024-12-13T23:12:07,955   copying topaz/__init__.py -> build/lib/topaz
2024-12-13T23:12:07,957   copying topaz/main.py -> build/lib/topaz
2024-12-13T23:12:07,960   copying topaz/_version.py -> build/lib/topaz
2024-12-13T23:12:07,962   copying topaz/denoise.py -> build/lib/topaz
2024-12-13T23:12:07,965   copying topaz/training.py -> build/lib/topaz
2024-12-13T23:12:07,968   copying topaz/torch.py -> build/lib/topaz
2024-12-13T23:12:07,970   copying topaz/stats.py -> build/lib/topaz
2024-12-13T23:12:07,972   copying topaz/methods.py -> build/lib/topaz
2024-12-13T23:12:07,975   copying topaz/predict.py -> build/lib/topaz
2024-12-13T23:12:07,978   copying topaz/cuda.py -> build/lib/topaz
2024-12-13T23:12:07,980   creating build/lib/topaz/model
2024-12-13T23:12:07,981   copying topaz/model/factory.py -> build/lib/topaz/model
2024-12-13T23:12:07,983   copying topaz/model/generative.py -> build/lib/topaz/model
2024-12-13T23:12:07,985   copying topaz/model/classifier.py -> build/lib/topaz/model
2024-12-13T23:12:07,987   copying topaz/model/__init__.py -> build/lib/topaz/model
2024-12-13T23:12:07,989   copying topaz/model/utils.py -> build/lib/topaz/model
2024-12-13T23:12:07,992   creating build/lib/topaz/utils
2024-12-13T23:12:07,993   copying topaz/utils/image.py -> build/lib/topaz/utils
2024-12-13T23:12:07,996   copying topaz/utils/__init__.py -> build/lib/topaz/utils
2024-12-13T23:12:08,008   copying topaz/utils/files.py -> build/lib/topaz/utils
2024-12-13T23:12:08,012   copying topaz/utils/star.py -> build/lib/topaz/utils
2024-12-13T23:12:08,015   copying topaz/utils/picks.py -> build/lib/topaz/utils
2024-12-13T23:12:08,019   copying topaz/utils/printing.py -> build/lib/topaz/utils
2024-12-13T23:12:08,022   copying topaz/utils/conversions.py -> build/lib/topaz/utils
2024-12-13T23:12:08,025   creating build/lib/topaz/transform
2024-12-13T23:12:08,027   copying topaz/transform/__init__.py -> build/lib/topaz/transform
2024-12-13T23:12:08,029   copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
2024-12-13T23:12:08,034   creating build/lib/topaz/commands
2024-12-13T23:12:08,037   copying topaz/commands/preprocess.py -> build/lib/topaz/commands
2024-12-13T23:12:08,040   copying topaz/commands/extract.py -> build/lib/topaz/commands
2024-12-13T23:12:08,043   copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
2024-12-13T23:12:08,046   copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
2024-12-13T23:12:08,050   copying topaz/commands/gui.py -> build/lib/topaz/commands
2024-12-13T23:12:08,054   copying topaz/commands/__init__.py -> build/lib/topaz/commands
2024-12-13T23:12:08,058   copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
2024-12-13T23:12:08,064   copying topaz/commands/segment.py -> build/lib/topaz/commands
2024-12-13T23:12:08,069   copying topaz/commands/convert.py -> build/lib/topaz/commands
2024-12-13T23:12:08,078   copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
2024-12-13T23:12:08,086   copying topaz/commands/denoise3d.py -> build/lib/topaz/commands
2024-12-13T23:12:08,096   copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
2024-12-13T23:12:08,106   copying topaz/commands/denoise.py -> build/lib/topaz/commands
2024-12-13T23:12:08,115   copying topaz/commands/train.py -> build/lib/topaz/commands
2024-12-13T23:12:08,119   copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
2024-12-13T23:12:08,122   copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
2024-12-13T23:12:08,125   copying topaz/commands/normalize.py -> build/lib/topaz/commands
2024-12-13T23:12:08,129   copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
2024-12-13T23:12:08,139   copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
2024-12-13T23:12:08,151   copying topaz/commands/downsample.py -> build/lib/topaz/commands
2024-12-13T23:12:08,164   copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
2024-12-13T23:12:08,175   copying topaz/commands/split.py -> build/lib/topaz/commands
2024-12-13T23:12:08,187   creating build/lib/topaz/denoising
2024-12-13T23:12:08,190   copying topaz/denoising/models.py -> build/lib/topaz/denoising
2024-12-13T23:12:08,199   copying topaz/denoising/__init__.py -> build/lib/topaz/denoising
2024-12-13T23:12:08,204   copying topaz/denoising/utils.py -> build/lib/topaz/denoising
2024-12-13T23:12:08,210   copying topaz/denoising/datasets.py -> build/lib/topaz/denoising
2024-12-13T23:12:08,218   creating build/lib/topaz/model/features
2024-12-13T23:12:08,220   copying topaz/model/features/basic.py -> build/lib/topaz/model/features
2024-12-13T23:12:08,223   copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
2024-12-13T23:12:08,226   copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
2024-12-13T23:12:08,230   copying topaz/model/features/msnet.py -> build/lib/topaz/model/features
2024-12-13T23:12:08,235   copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
2024-12-13T23:12:08,241   creating build/lib/topaz/utils/data
2024-12-13T23:12:08,243   copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,249   copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,254   copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,257   copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,259   copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,263   copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,268   copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data
2024-12-13T23:12:08,273   running egg_info
2024-12-13T23:12:08,330   writing topaz_em.egg-info/PKG-INFO
2024-12-13T23:12:08,340   writing dependency_links to topaz_em.egg-info/dependency_links.txt
2024-12-13T23:12:08,345   writing entry points to topaz_em.egg-info/entry_points.txt
2024-12-13T23:12:08,350   writing requirements to topaz_em.egg-info/requires.txt
2024-12-13T23:12:08,353   writing top-level names to topaz_em.egg-info/top_level.txt
2024-12-13T23:12:08,401   reading manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-12-13T23:12:08,408   reading manifest template 'MANIFEST.in'
2024-12-13T23:12:08,411   adding license file 'LICENSE'
2024-12-13T23:12:08,417   writing manifest file 'topaz_em.egg-info/SOURCES.txt'
2024-12-13T23:12:08,420   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration.
2024-12-13T23:12:08,421   !!

2024-12-13T23:12:08,422           ********************************************************************************
2024-12-13T23:12:08,423           ############################
2024-12-13T23:12:08,424           # Package would be ignored #
2024-12-13T23:12:08,425           ############################
2024-12-13T23:12:08,426           Python recognizes 'topaz.gui' as an importable package[^1],
2024-12-13T23:12:08,427           but it is absent from setuptools' `packages` configuration.

2024-12-13T23:12:08,430           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-13T23:12:08,431           package, please make sure that 'topaz.gui' is explicitly added
2024-12-13T23:12:08,432           to the `packages` configuration field.

2024-12-13T23:12:08,435           Alternatively, you can also rely on setuptools' discovery methods
2024-12-13T23:12:08,436           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-13T23:12:08,438           instead of `find_packages(...)`/`find:`).

2024-12-13T23:12:08,439           You can read more about "package discovery" on setuptools documentation page:

2024-12-13T23:12:08,441           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-13T23:12:08,443           If you don't want 'topaz.gui' to be distributed and are
2024-12-13T23:12:08,445           already explicitly excluding 'topaz.gui' via
2024-12-13T23:12:08,447           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-13T23:12:08,450           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-13T23:12:08,450           combination with a more fine grained `package-data` configuration.

2024-12-13T23:12:08,452           You can read more about "package data files" on setuptools documentation page:

2024-12-13T23:12:08,453           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-13T23:12:08,456           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-13T23:12:08,456                 even if it does not contain any `.py` files.
2024-12-13T23:12:08,457                 On the other hand, currently there is no concept of package data
2024-12-13T23:12:08,457                 directory, all directories are treated like packages.
2024-12-13T23:12:08,464           ********************************************************************************

2024-12-13T23:12:08,465   !!
2024-12-13T23:12:08,466     check.warn(importable)
2024-12-13T23:12:08,466   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration.
2024-12-13T23:12:08,467   !!

2024-12-13T23:12:08,468           ********************************************************************************
2024-12-13T23:12:08,469           ############################
2024-12-13T23:12:08,469           # Package would be ignored #
2024-12-13T23:12:08,470           ############################
2024-12-13T23:12:08,470           Python recognizes 'topaz.pretrained.denoise' as an importable package[^1],
2024-12-13T23:12:08,471           but it is absent from setuptools' `packages` configuration.

2024-12-13T23:12:08,472           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-13T23:12:08,473           package, please make sure that 'topaz.pretrained.denoise' is explicitly added
2024-12-13T23:12:08,474           to the `packages` configuration field.

2024-12-13T23:12:08,475           Alternatively, you can also rely on setuptools' discovery methods
2024-12-13T23:12:08,475           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-13T23:12:08,476           instead of `find_packages(...)`/`find:`).

2024-12-13T23:12:08,477           You can read more about "package discovery" on setuptools documentation page:

2024-12-13T23:12:08,478           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-13T23:12:08,480           If you don't want 'topaz.pretrained.denoise' to be distributed and are
2024-12-13T23:12:08,480           already explicitly excluding 'topaz.pretrained.denoise' via
2024-12-13T23:12:08,481           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-13T23:12:08,481           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-13T23:12:08,482           combination with a more fine grained `package-data` configuration.

2024-12-13T23:12:08,483           You can read more about "package data files" on setuptools documentation page:

2024-12-13T23:12:08,492           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-13T23:12:08,498           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-13T23:12:08,498                 even if it does not contain any `.py` files.
2024-12-13T23:12:08,499                 On the other hand, currently there is no concept of package data
2024-12-13T23:12:08,499                 directory, all directories are treated like packages.
2024-12-13T23:12:08,499           ********************************************************************************

2024-12-13T23:12:08,500   !!
2024-12-13T23:12:08,501     check.warn(importable)
2024-12-13T23:12:08,501   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration.
2024-12-13T23:12:08,502   !!

2024-12-13T23:12:08,503           ********************************************************************************
2024-12-13T23:12:08,503           ############################
2024-12-13T23:12:08,503           # Package would be ignored #
2024-12-13T23:12:08,504           ############################
2024-12-13T23:12:08,504           Python recognizes 'topaz.pretrained.detector' as an importable package[^1],
2024-12-13T23:12:08,505           but it is absent from setuptools' `packages` configuration.

2024-12-13T23:12:08,506           This leads to an ambiguous overall configuration. If you want to distribute this
2024-12-13T23:12:08,507           package, please make sure that 'topaz.pretrained.detector' is explicitly added
2024-12-13T23:12:08,507           to the `packages` configuration field.

2024-12-13T23:12:08,508           Alternatively, you can also rely on setuptools' discovery methods
2024-12-13T23:12:08,509           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-12-13T23:12:08,510           instead of `find_packages(...)`/`find:`).

2024-12-13T23:12:08,511           You can read more about "package discovery" on setuptools documentation page:

2024-12-13T23:12:08,512           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-12-13T23:12:08,514           If you don't want 'topaz.pretrained.detector' to be distributed and are
2024-12-13T23:12:08,515           already explicitly excluding 'topaz.pretrained.detector' via
2024-12-13T23:12:08,516           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-12-13T23:12:08,516           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-12-13T23:12:08,517           combination with a more fine grained `package-data` configuration.

2024-12-13T23:12:08,518           You can read more about "package data files" on setuptools documentation page:

2024-12-13T23:12:08,519           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-12-13T23:12:08,521           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-12-13T23:12:08,522                 even if it does not contain any `.py` files.
2024-12-13T23:12:08,522                 On the other hand, currently there is no concept of package data
2024-12-13T23:12:08,523                 directory, all directories are treated like packages.
2024-12-13T23:12:08,524           ********************************************************************************

2024-12-13T23:12:08,525   !!
2024-12-13T23:12:08,525     check.warn(importable)
2024-12-13T23:12:08,526   creating build/lib/topaz/gui
2024-12-13T23:12:08,527   copying topaz/gui/topaz.html -> build/lib/topaz/gui
2024-12-13T23:12:08,527   creating build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,528   copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,529   copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,530   copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,683   copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,894   copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:08,964   copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:09,033   copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2024-12-13T23:12:09,080   creating build/lib/topaz/pretrained/detector
2024-12-13T23:12:09,081   copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector
2024-12-13T23:12:09,122   copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector
2024-12-13T23:12:09,253   copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector
2024-12-13T23:12:09,276   copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector
2024-12-13T23:12:09,385   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-12-13T23:12:09,386   !!

2024-12-13T23:12:09,387           ********************************************************************************
2024-12-13T23:12:09,387           Please avoid running ``setup.py`` directly.
2024-12-13T23:12:09,387           Instead, use pypa/build, pypa/installer or other
2024-12-13T23:12:09,388           standards-based tools.

2024-12-13T23:12:09,389           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-12-13T23:12:09,390           ********************************************************************************

2024-12-13T23:12:09,391   !!
2024-12-13T23:12:09,391     self.initialize_options()
2024-12-13T23:12:09,413   installing to build/bdist.linux-armv7l/wheel
2024-12-13T23:12:09,414   running install
2024-12-13T23:12:09,439   running install_lib
2024-12-13T23:12:09,466   creating build/bdist.linux-armv7l/wheel
2024-12-13T23:12:09,468   creating build/bdist.linux-armv7l/wheel/topaz
2024-12-13T23:12:09,469   copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,472   copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,475   creating build/bdist.linux-armv7l/wheel/topaz/model
2024-12-13T23:12:09,476   copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-13T23:12:09,479   copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-13T23:12:09,481   copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-13T23:12:09,482   copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-13T23:12:09,485   creating build/bdist.linux-armv7l/wheel/topaz/model/features
2024-12-13T23:12:09,486   copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-13T23:12:09,488   copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-13T23:12:09,490   copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-13T23:12:09,492   copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-13T23:12:09,494   copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2024-12-13T23:12:09,497   copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2024-12-13T23:12:09,499   copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,502   copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,504   copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,507   creating build/bdist.linux-armv7l/wheel/topaz/utils
2024-12-13T23:12:09,508   copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,510   copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,512   copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,515   creating build/bdist.linux-armv7l/wheel/topaz/utils/data
2024-12-13T23:12:09,516   copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,518   copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,520   copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,522   copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,524   copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,526   copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,528   copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2024-12-13T23:12:09,530   copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,532   copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,534   copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,536   copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2024-12-13T23:12:09,539   copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,540   copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,543   copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,544   copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:09,547   creating build/bdist.linux-armv7l/wheel/topaz/pretrained
2024-12-13T23:12:09,549   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector
2024-12-13T23:12:09,550   copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-13T23:12:09,663   copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-13T23:12:09,754   copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-13T23:12:09,776   copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2024-12-13T23:12:09,826   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
2024-12-13T23:12:09,828   copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,000   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,059   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,125   copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,157   copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,160   copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,203   copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2024-12-13T23:12:10,385   copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,389   copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,391   copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,395   creating build/bdist.linux-armv7l/wheel/topaz/transform
2024-12-13T23:12:10,397   copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-12-13T23:12:10,399   copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2024-12-13T23:12:10,402   copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,406   creating build/bdist.linux-armv7l/wheel/topaz/gui
2024-12-13T23:12:10,407   copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui
2024-12-13T23:12:10,421   copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,424   creating build/bdist.linux-armv7l/wheel/topaz/commands
2024-12-13T23:12:10,425   copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,427   copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,430   copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,433   copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,435   copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,437   copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,439   copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,442   copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,444   copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,447   copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,449   copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,452   copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,455   copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,458   copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,461   copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,464   copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,467   copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,470   copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,472   copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,475   copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,477   copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,480   copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2024-12-13T23:12:10,483   creating build/bdist.linux-armv7l/wheel/topaz/denoising
2024-12-13T23:12:10,484   copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-13T23:12:10,488   copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-13T23:12:10,490   copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-13T23:12:10,492   copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2024-12-13T23:12:10,495   copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz
2024-12-13T23:12:10,497   running install_egg_info
2024-12-13T23:12:10,533   Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.5-py3.11.egg-info
2024-12-13T23:12:10,548   running install_scripts
2024-12-13T23:12:10,570   creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.5.dist-info/WHEEL
2024-12-13T23:12:10,572   creating '/tmp/pip-wheel-ua3pl8m1/topaz_em-0.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-12-13T23:12:10,575   adding 'topaz/__init__.py'
2024-12-13T23:12:10,577   adding 'topaz/_version.py'
2024-12-13T23:12:10,578   adding 'topaz/algorithms.py'
2024-12-13T23:12:10,580   adding 'topaz/cuda.py'
2024-12-13T23:12:10,583   adding 'topaz/denoise.py'
2024-12-13T23:12:10,586   adding 'topaz/extract.py'
2024-12-13T23:12:10,588   adding 'topaz/filters.py'
2024-12-13T23:12:10,590   adding 'topaz/main.py'
2024-12-13T23:12:10,592   adding 'topaz/methods.py'
2024-12-13T23:12:10,594   adding 'topaz/metrics.py'
2024-12-13T23:12:10,596   adding 'topaz/mrc.py'
2024-12-13T23:12:10,597   adding 'topaz/predict.py'
2024-12-13T23:12:10,600   adding 'topaz/stats.py'
2024-12-13T23:12:10,601   adding 'topaz/torch.py'
2024-12-13T23:12:10,606   adding 'topaz/training.py'
2024-12-13T23:12:10,608   adding 'topaz/commands/__init__.py'
2024-12-13T23:12:10,610   adding 'topaz/commands/boxes_to_coordinates.py'
2024-12-13T23:12:10,612   adding 'topaz/commands/convert.py'
2024-12-13T23:12:10,614   adding 'topaz/commands/coordinates_to_boxes.py'
2024-12-13T23:12:10,615   adding 'topaz/commands/coordinates_to_eman2_json.py'
2024-12-13T23:12:10,617   adding 'topaz/commands/coordinates_to_star.py'
2024-12-13T23:12:10,619   adding 'topaz/commands/denoise.py'
2024-12-13T23:12:10,621   adding 'topaz/commands/denoise3d.py'
2024-12-13T23:12:10,623   adding 'topaz/commands/downsample.py'
2024-12-13T23:12:10,625   adding 'topaz/commands/extract.py'
2024-12-13T23:12:10,626   adding 'topaz/commands/gui.py'
2024-12-13T23:12:10,628   adding 'topaz/commands/normalize.py'
2024-12-13T23:12:10,630   adding 'topaz/commands/particle_stack.py'
2024-12-13T23:12:10,631   adding 'topaz/commands/precision_recall_curve.py'
2024-12-13T23:12:10,633   adding 'topaz/commands/preprocess.py'
2024-12-13T23:12:10,634   adding 'topaz/commands/scale_coordinates.py'
2024-12-13T23:12:10,636   adding 'topaz/commands/segment.py'
2024-12-13T23:12:10,637   adding 'topaz/commands/split.py'
2024-12-13T23:12:10,639   adding 'topaz/commands/star_particles_threshold.py'
2024-12-13T23:12:10,641   adding 'topaz/commands/star_to_coordinates.py'
2024-12-13T23:12:10,643   adding 'topaz/commands/train.py'
2024-12-13T23:12:10,645   adding 'topaz/commands/train_test_split.py'
2024-12-13T23:12:10,647   adding 'topaz/denoising/__init__.py'
2024-12-13T23:12:10,650   adding 'topaz/denoising/datasets.py'
2024-12-13T23:12:10,653   adding 'topaz/denoising/models.py'
2024-12-13T23:12:10,654   adding 'topaz/denoising/utils.py'
2024-12-13T23:12:10,708   adding 'topaz/gui/topaz.html'
2024-12-13T23:12:10,714   adding 'topaz/model/__init__.py'
2024-12-13T23:12:10,716   adding 'topaz/model/classifier.py'
2024-12-13T23:12:10,718   adding 'topaz/model/factory.py'
2024-12-13T23:12:10,720   adding 'topaz/model/generative.py'
2024-12-13T23:12:10,722   adding 'topaz/model/utils.py'
2024-12-13T23:12:10,724   adding 'topaz/model/features/__init__.py'
2024-12-13T23:12:10,726   adding 'topaz/model/features/basic.py'
2024-12-13T23:12:10,728   adding 'topaz/model/features/densenet.py'
2024-12-13T23:12:10,730   adding 'topaz/model/features/msnet.py'
2024-12-13T23:12:10,732   adding 'topaz/model/features/resnet.py'
2024-12-13T23:12:10,735   adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav'
2024-12-13T23:12:11,041   adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav'
2024-12-13T23:12:12,838   adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav'
2024-12-13T23:12:14,695   adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav'
2024-12-13T23:12:15,362   adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav'
2024-12-13T23:12:16,071   adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav'
2024-12-13T23:12:16,501   adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav'
2024-12-13T23:12:16,797   adding 'topaz/pretrained/detector/resnet16_u32.sav'
2024-12-13T23:12:17,927   adding 'topaz/pretrained/detector/resnet16_u64.sav'
2024-12-13T23:12:18,174   adding 'topaz/pretrained/detector/resnet8_u32.sav'
2024-12-13T23:12:18,980   adding 'topaz/pretrained/detector/resnet8_u64.sav'
2024-12-13T23:12:19,014   adding 'topaz/transform/__init__.py'
2024-12-13T23:12:19,016   adding 'topaz/transform/scaled_gaussian_mixture.py'
2024-12-13T23:12:19,018   adding 'topaz/utils/__init__.py'
2024-12-13T23:12:19,020   adding 'topaz/utils/conversions.py'
2024-12-13T23:12:19,022   adding 'topaz/utils/files.py'
2024-12-13T23:12:19,024   adding 'topaz/utils/image.py'
2024-12-13T23:12:19,026   adding 'topaz/utils/picks.py'
2024-12-13T23:12:19,027   adding 'topaz/utils/printing.py'
2024-12-13T23:12:19,029   adding 'topaz/utils/star.py'
2024-12-13T23:12:19,031   adding 'topaz/utils/data/__init__.py'
2024-12-13T23:12:19,032   adding 'topaz/utils/data/coordinates.py'
2024-12-13T23:12:19,035   adding 'topaz/utils/data/loader.py'
2024-12-13T23:12:19,037   adding 'topaz/utils/data/memory_mapped_data.py'
2024-12-13T23:12:19,039   adding 'topaz/utils/data/partition.py'
2024-12-13T23:12:19,041   adding 'topaz/utils/data/sampler.py'
2024-12-13T23:12:19,043   adding 'topaz/utils/data/train_test_split_micrographs.py'
2024-12-13T23:12:19,050   adding 'topaz_em-0.3.5.dist-info/LICENSE'
2024-12-13T23:12:19,052   adding 'topaz_em-0.3.5.dist-info/METADATA'
2024-12-13T23:12:19,053   adding 'topaz_em-0.3.5.dist-info/WHEEL'
2024-12-13T23:12:19,054   adding 'topaz_em-0.3.5.dist-info/entry_points.txt'
2024-12-13T23:12:19,055   adding 'topaz_em-0.3.5.dist-info/top_level.txt'
2024-12-13T23:12:19,058   adding 'topaz_em-0.3.5.dist-info/RECORD'
2024-12-13T23:12:19,558   removing build/bdist.linux-armv7l/wheel
2024-12-13T23:12:19,721   Building wheel for topaz-em (setup.py): finished with status 'done'
2024-12-13T23:12:20,197   Created wheel for topaz-em: filename=topaz_em-0.3.5-py3-none-any.whl size=48203307 sha256=a51b117556b0902d11bad3e1b0daaeb973ae7dcb00417b8bc07c1d895553d8a8
2024-12-13T23:12:20,198   Stored in directory: /tmp/pip-ephem-wheel-cache-4ulihc3v/wheels/f3/c0/fc/18f624d186b5b0134098c88656fb14864c7f2fef4fe80f3e21
2024-12-13T23:12:20,227 Successfully built topaz-em
2024-12-13T23:12:21,386 Removed build tracker: '/tmp/pip-build-tracker-tiq3r_xt'