2024-12-16T02:05:12,756 Created temporary directory: /tmp/pip-build-tracker-o3fkn84l 2024-12-16T02:05:12,757 Initialized build tracking at /tmp/pip-build-tracker-o3fkn84l 2024-12-16T02:05:12,758 Created build tracker: /tmp/pip-build-tracker-o3fkn84l 2024-12-16T02:05:12,758 Entered build tracker: /tmp/pip-build-tracker-o3fkn84l 2024-12-16T02:05:12,759 Created temporary directory: /tmp/pip-wheel-v49wl_dn 2024-12-16T02:05:12,763 Created temporary directory: /tmp/pip-ephem-wheel-cache-6_wx86bp 2024-12-16T02:05:12,811 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-16T02:05:12,814 2 location(s) to search for versions of hecatomb: 2024-12-16T02:05:12,814 * https://pypi.org/simple/hecatomb/ 2024-12-16T02:05:12,814 * https://www.piwheels.org/simple/hecatomb/ 2024-12-16T02:05:12,814 Fetching project page and analyzing links: https://pypi.org/simple/hecatomb/ 2024-12-16T02:05:12,815 Getting page https://pypi.org/simple/hecatomb/ 2024-12-16T02:05:12,817 Found index url https://pypi.org/simple/ 2024-12-16T02:05:13,041 Fetched page https://pypi.org/simple/hecatomb/ as application/vnd.pypi.simple.v1+json 2024-12-16T02:05:13,044 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/cd/63/aaa5ce961dbf2daa1babcfd88326eb999b63b3d9b697762955b278494d51/hecatomb-1.2.0-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.7) 2024-12-16T02:05:13,046 Found link https://files.pythonhosted.org/packages/e4/8a/60abbe18523fcf27f997b4b5e25499d58a76e6a17cb2343787c4853050f9/hecatomb-1.2.0.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.7), version: 1.2.0 2024-12-16T02:05:13,046 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/6b/f0/3284cfa8ff54616784442f04b2532d7276a58b3eb2417cfd15def8e0c56f/hecatomb-1.3.0-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,047 Found link https://files.pythonhosted.org/packages/ce/56/2dab4a7325b279174f9da6f0a213f655f4e031363974e67130ffc24261e8/hecatomb-1.3.0.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.0 2024-12-16T02:05:13,048 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/a2/7d/dc077ab4a55c89c38c2fb9d38deb3db7e7fdcff5efad9f51c11e689eaedb/hecatomb-1.3.1-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,049 Found link https://files.pythonhosted.org/packages/9c/4a/d3baa63f70267bbfa3112d1af6dc491e105aa4dbf41f9a44c69b8c07111f/hecatomb-1.3.1.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.1 2024-12-16T02:05:13,050 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/35/f5/da7aae250963fd15d6dc9680a056045db375096be2d680f91e42352530ef/hecatomb-1.3.2-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,051 Found link https://files.pythonhosted.org/packages/d2/05/5afc0f3a18a2ccd8b34f6c087a276f941d0e285833c9b2a7b6d8a62d4c5a/hecatomb-1.3.2.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.2 2024-12-16T02:05:13,052 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/9a/13/2677e5d4c737ce094d4af2cfc10a4f954db42d3d6d1673c0db4b16122339/hecatomb-1.3.3-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,053 Found link https://files.pythonhosted.org/packages/b8/5a/33086cb3436426fc88a4f511059d4e7b1e78c676c183ada88bfadc8a0126/hecatomb-1.3.3.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.3 2024-12-16T02:05:13,053 Fetching project page and analyzing links: https://www.piwheels.org/simple/hecatomb/ 2024-12-16T02:05:13,054 Getting page https://www.piwheels.org/simple/hecatomb/ 2024-12-16T02:05:13,056 Found index url https://www.piwheels.org/simple/ 2024-12-16T02:05:13,226 Fetched page https://www.piwheels.org/simple/hecatomb/ as text/html 2024-12-16T02:05:13,228 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.3.2-py3-none-any.whl#sha256=bc8e95a886557900889d280f10358e2b14f97e09cbd7498af6217e9a03cc3dd6 (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,229 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.3.1-py3-none-any.whl#sha256=8f0817abc80281adfc7773bdc4a03ddc88bf1432032a5e8440dba75f23489930 (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,230 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.3.0-py3-none-any.whl#sha256=7c88ee5207d15214efcf06eab485fc2b867d86cc43648f88f8ca409228d62d42 (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.9) 2024-12-16T02:05:13,230 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.2.0-py3-none-any.whl#sha256=ad0eaa01aaa37d90124282fa20269ed0e9153ae6f03c8ab3f713b7245f58e98b (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.7) 2024-12-16T02:05:13,231 Skipping link: not a file: https://www.piwheels.org/simple/hecatomb/ 2024-12-16T02:05:13,231 Skipping link: not a file: https://pypi.org/simple/hecatomb/ 2024-12-16T02:05:13,250 Given no hashes to check 1 links for project 'hecatomb': discarding no candidates 2024-12-16T02:05:13,252 Collecting hecatomb==1.3.3 2024-12-16T02:05:13,254 Created temporary directory: /tmp/pip-unpack-hv8u7m9h 2024-12-16T02:05:13,482 Downloading hecatomb-1.3.3.tar.gz (98.5 MB) 2024-12-16T02:05:31,083 Added hecatomb==1.3.3 from https://files.pythonhosted.org/packages/b8/5a/33086cb3436426fc88a4f511059d4e7b1e78c676c183ada88bfadc8a0126/hecatomb-1.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-o3fkn84l' 2024-12-16T02:05:31,086 Running setup.py (path:/tmp/pip-wheel-v49wl_dn/hecatomb_240edba57007491f95426a0ef4194054/setup.py) egg_info for package hecatomb 2024-12-16T02:05:31,087 Created temporary directory: /tmp/pip-pip-egg-info-fuucr7_s 2024-12-16T02:05:31,088 Preparing metadata (setup.py): started 2024-12-16T02:05:31,089 Running command python setup.py egg_info 2024-12-16T02:05:32,184 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:337: InformationOnly: Normalizing 'v1.3.3' to '1.3.3' 2024-12-16T02:05:32,184 self.metadata.version = self._normalize_version(self.metadata.version) 2024-12-16T02:05:32,219 running egg_info 2024-12-16T02:05:32,246 creating /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info 2024-12-16T02:05:32,247 writing /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/PKG-INFO 2024-12-16T02:05:32,251 writing dependency_links to /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/dependency_links.txt 2024-12-16T02:05:32,252 writing entry points to /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/entry_points.txt 2024-12-16T02:05:32,254 writing requirements to /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/requires.txt 2024-12-16T02:05:32,255 writing top-level names to /tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/top_level.txt 2024-12-16T02:05:32,256 writing manifest file '/tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/SOURCES.txt' 2024-12-16T02:05:32,314 file hecatomb.py (for module hecatomb) not found 2024-12-16T02:05:32,341 reading manifest file '/tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/SOURCES.txt' 2024-12-16T02:05:32,343 reading manifest template 'MANIFEST.in' 2024-12-16T02:05:32,385 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/conda' 2024-12-16T02:05:32,386 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/databases' 2024-12-16T02:05:32,387 adding license file 'LICENSE' 2024-12-16T02:05:32,392 writing manifest file '/tmp/pip-pip-egg-info-fuucr7_s/hecatomb.egg-info/SOURCES.txt' 2024-12-16T02:05:32,500 Preparing metadata (setup.py): finished with status 'done' 2024-12-16T02:05:32,505 Source in /tmp/pip-wheel-v49wl_dn/hecatomb_240edba57007491f95426a0ef4194054 has version 1.3.3, which satisfies requirement hecatomb==1.3.3 from https://files.pythonhosted.org/packages/b8/5a/33086cb3436426fc88a4f511059d4e7b1e78c676c183ada88bfadc8a0126/hecatomb-1.3.3.tar.gz 2024-12-16T02:05:32,506 Removed hecatomb==1.3.3 from https://files.pythonhosted.org/packages/b8/5a/33086cb3436426fc88a4f511059d4e7b1e78c676c183ada88bfadc8a0126/hecatomb-1.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-o3fkn84l' 2024-12-16T02:05:32,513 Created temporary directory: /tmp/pip-unpack-esdsaxdq 2024-12-16T02:05:32,514 Created temporary directory: /tmp/pip-unpack-p5ir8lge 2024-12-16T02:05:32,515 Building wheels for collected packages: hecatomb 2024-12-16T02:05:32,519 Created temporary directory: /tmp/pip-wheel-11ffd848 2024-12-16T02:05:32,519 Building wheel for hecatomb (setup.py): started 2024-12-16T02:05:32,520 Destination directory: /tmp/pip-wheel-11ffd848 2024-12-16T02:05:32,521 Running command python setup.py bdist_wheel 2024-12-16T02:05:33,539 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:337: InformationOnly: Normalizing 'v1.3.3' to '1.3.3' 2024-12-16T02:05:33,540 self.metadata.version = self._normalize_version(self.metadata.version) 2024-12-16T02:05:33,548 running bdist_wheel 2024-12-16T02:05:33,679 running build 2024-12-16T02:05:33,679 running build_py 2024-12-16T02:05:33,707 file hecatomb.py (for module hecatomb) not found 2024-12-16T02:05:33,709 creating build/lib/hecatomb 2024-12-16T02:05:33,711 copying hecatomb/__init__.py -> build/lib/hecatomb 2024-12-16T02:05:33,713 copying hecatomb/__main__.py -> build/lib/hecatomb 2024-12-16T02:05:33,715 running egg_info 2024-12-16T02:05:33,743 writing hecatomb.egg-info/PKG-INFO 2024-12-16T02:05:33,747 writing dependency_links to hecatomb.egg-info/dependency_links.txt 2024-12-16T02:05:33,748 writing entry points to hecatomb.egg-info/entry_points.txt 2024-12-16T02:05:33,749 writing requirements to hecatomb.egg-info/requires.txt 2024-12-16T02:05:33,751 writing top-level names to hecatomb.egg-info/top_level.txt 2024-12-16T02:05:33,753 file hecatomb.py (for module hecatomb) not found 2024-12-16T02:05:33,783 reading manifest file 'hecatomb.egg-info/SOURCES.txt' 2024-12-16T02:05:33,791 reading manifest template 'MANIFEST.in' 2024-12-16T02:05:33,832 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/conda' 2024-12-16T02:05:33,833 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/databases' 2024-12-16T02:05:33,834 adding license file 'LICENSE' 2024-12-16T02:05:33,840 writing manifest file 'hecatomb.egg-info/SOURCES.txt' 2024-12-16T02:05:33,843 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.config' is absent from the `packages` configuration. 2024-12-16T02:05:33,844 !! 2024-12-16T02:05:33,845 ******************************************************************************** 2024-12-16T02:05:33,845 ############################ 2024-12-16T02:05:33,846 # Package would be ignored # 2024-12-16T02:05:33,846 ############################ 2024-12-16T02:05:33,847 Python recognizes 'hecatomb.snakemake.config' as an importable package[^1], 2024-12-16T02:05:33,848 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,850 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,850 package, please make sure that 'hecatomb.snakemake.config' is explicitly added 2024-12-16T02:05:33,851 to the `packages` configuration field. 2024-12-16T02:05:33,852 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,852 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,853 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,855 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,856 If you don't want 'hecatomb.snakemake.config' to be distributed and are 2024-12-16T02:05:33,857 already explicitly excluding 'hecatomb.snakemake.config' via 2024-12-16T02:05:33,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,858 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,859 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,861 even if it does not contain any `.py` files. 2024-12-16T02:05:33,861 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,862 directory, all directories are treated like packages. 2024-12-16T02:05:33,862 ******************************************************************************** 2024-12-16T02:05:33,863 !! 2024-12-16T02:05:33,863 check.warn(importable) 2024-12-16T02:05:33,864 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.profile.default' is absent from the `packages` configuration. 2024-12-16T02:05:33,864 !! 2024-12-16T02:05:33,865 ******************************************************************************** 2024-12-16T02:05:33,866 ############################ 2024-12-16T02:05:33,866 # Package would be ignored # 2024-12-16T02:05:33,867 ############################ 2024-12-16T02:05:33,867 Python recognizes 'hecatomb.snakemake.profile.default' as an importable package[^1], 2024-12-16T02:05:33,868 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,868 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,869 package, please make sure that 'hecatomb.snakemake.profile.default' is explicitly added 2024-12-16T02:05:33,870 to the `packages` configuration field. 2024-12-16T02:05:33,871 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,872 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,872 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,874 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,875 If you don't want 'hecatomb.snakemake.profile.default' to be distributed and are 2024-12-16T02:05:33,875 already explicitly excluding 'hecatomb.snakemake.profile.default' via 2024-12-16T02:05:33,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,877 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,878 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,881 even if it does not contain any `.py` files. 2024-12-16T02:05:33,882 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,882 directory, all directories are treated like packages. 2024-12-16T02:05:33,883 ******************************************************************************** 2024-12-16T02:05:33,884 !! 2024-12-16T02:05:33,884 check.warn(importable) 2024-12-16T02:05:33,884 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.profile.example_slurm' is absent from the `packages` configuration. 2024-12-16T02:05:33,885 !! 2024-12-16T02:05:33,886 ******************************************************************************** 2024-12-16T02:05:33,886 ############################ 2024-12-16T02:05:33,887 # Package would be ignored # 2024-12-16T02:05:33,887 ############################ 2024-12-16T02:05:33,888 Python recognizes 'hecatomb.snakemake.profile.example_slurm' as an importable package[^1], 2024-12-16T02:05:33,888 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,889 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,890 package, please make sure that 'hecatomb.snakemake.profile.example_slurm' is explicitly added 2024-12-16T02:05:33,890 to the `packages` configuration field. 2024-12-16T02:05:33,891 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,891 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,892 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,893 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,894 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,895 If you don't want 'hecatomb.snakemake.profile.example_slurm' to be distributed and are 2024-12-16T02:05:33,895 already explicitly excluding 'hecatomb.snakemake.profile.example_slurm' via 2024-12-16T02:05:33,896 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,896 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,897 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,898 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,899 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,900 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,901 even if it does not contain any `.py` files. 2024-12-16T02:05:33,901 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,902 directory, all directories are treated like packages. 2024-12-16T02:05:33,902 ******************************************************************************** 2024-12-16T02:05:33,903 !! 2024-12-16T02:05:33,904 check.warn(importable) 2024-12-16T02:05:33,904 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow' is absent from the `packages` configuration. 2024-12-16T02:05:33,905 !! 2024-12-16T02:05:33,906 ******************************************************************************** 2024-12-16T02:05:33,907 ############################ 2024-12-16T02:05:33,907 # Package would be ignored # 2024-12-16T02:05:33,908 ############################ 2024-12-16T02:05:33,908 Python recognizes 'hecatomb.snakemake.workflow' as an importable package[^1], 2024-12-16T02:05:33,909 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,910 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,911 package, please make sure that 'hecatomb.snakemake.workflow' is explicitly added 2024-12-16T02:05:33,911 to the `packages` configuration field. 2024-12-16T02:05:33,912 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,913 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,914 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,916 If you don't want 'hecatomb.snakemake.workflow' to be distributed and are 2024-12-16T02:05:33,916 already explicitly excluding 'hecatomb.snakemake.workflow' via 2024-12-16T02:05:33,916 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,917 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,918 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,921 even if it does not contain any `.py` files. 2024-12-16T02:05:33,921 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,922 directory, all directories are treated like packages. 2024-12-16T02:05:33,922 ******************************************************************************** 2024-12-16T02:05:33,923 !! 2024-12-16T02:05:33,924 check.warn(importable) 2024-12-16T02:05:33,924 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.envs' is absent from the `packages` configuration. 2024-12-16T02:05:33,925 !! 2024-12-16T02:05:33,926 ******************************************************************************** 2024-12-16T02:05:33,926 ############################ 2024-12-16T02:05:33,927 # Package would be ignored # 2024-12-16T02:05:33,927 ############################ 2024-12-16T02:05:33,927 Python recognizes 'hecatomb.snakemake.workflow.envs' as an importable package[^1], 2024-12-16T02:05:33,928 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,929 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,930 package, please make sure that 'hecatomb.snakemake.workflow.envs' is explicitly added 2024-12-16T02:05:33,930 to the `packages` configuration field. 2024-12-16T02:05:33,931 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,932 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,933 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,935 If you don't want 'hecatomb.snakemake.workflow.envs' to be distributed and are 2024-12-16T02:05:33,936 already explicitly excluding 'hecatomb.snakemake.workflow.envs' via 2024-12-16T02:05:33,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,937 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,937 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,939 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,941 even if it does not contain any `.py` files. 2024-12-16T02:05:33,942 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,942 directory, all directories are treated like packages. 2024-12-16T02:05:33,942 ******************************************************************************** 2024-12-16T02:05:33,943 !! 2024-12-16T02:05:33,944 check.warn(importable) 2024-12-16T02:05:33,944 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.report' is absent from the `packages` configuration. 2024-12-16T02:05:33,945 !! 2024-12-16T02:05:33,945 ******************************************************************************** 2024-12-16T02:05:33,946 ############################ 2024-12-16T02:05:33,946 # Package would be ignored # 2024-12-16T02:05:33,947 ############################ 2024-12-16T02:05:33,947 Python recognizes 'hecatomb.snakemake.workflow.report' as an importable package[^1], 2024-12-16T02:05:33,948 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,948 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,949 package, please make sure that 'hecatomb.snakemake.workflow.report' is explicitly added 2024-12-16T02:05:33,949 to the `packages` configuration field. 2024-12-16T02:05:33,950 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,951 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,951 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,952 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,953 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,955 If you don't want 'hecatomb.snakemake.workflow.report' to be distributed and are 2024-12-16T02:05:33,955 already explicitly excluding 'hecatomb.snakemake.workflow.report' via 2024-12-16T02:05:33,955 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,956 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,956 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,958 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,958 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,960 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,960 even if it does not contain any `.py` files. 2024-12-16T02:05:33,961 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,962 directory, all directories are treated like packages. 2024-12-16T02:05:33,962 ******************************************************************************** 2024-12-16T02:05:33,963 !! 2024-12-16T02:05:33,964 check.warn(importable) 2024-12-16T02:05:33,964 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.rules.annotation' is absent from the `packages` configuration. 2024-12-16T02:05:33,965 !! 2024-12-16T02:05:33,966 ******************************************************************************** 2024-12-16T02:05:33,967 ############################ 2024-12-16T02:05:33,968 # Package would be ignored # 2024-12-16T02:05:33,968 ############################ 2024-12-16T02:05:33,969 Python recognizes 'hecatomb.snakemake.workflow.rules.annotation' as an importable package[^1], 2024-12-16T02:05:33,969 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,970 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,970 package, please make sure that 'hecatomb.snakemake.workflow.rules.annotation' is explicitly added 2024-12-16T02:05:33,971 to the `packages` configuration field. 2024-12-16T02:05:33,972 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,972 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,973 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,974 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,976 If you don't want 'hecatomb.snakemake.workflow.rules.annotation' to be distributed and are 2024-12-16T02:05:33,976 already explicitly excluding 'hecatomb.snakemake.workflow.rules.annotation' via 2024-12-16T02:05:33,977 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,977 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:33,978 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:33,979 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:33,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:33,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:33,982 even if it does not contain any `.py` files. 2024-12-16T02:05:33,982 On the other hand, currently there is no concept of package data 2024-12-16T02:05:33,983 directory, all directories are treated like packages. 2024-12-16T02:05:33,983 ******************************************************************************** 2024-12-16T02:05:33,984 !! 2024-12-16T02:05:33,985 check.warn(importable) 2024-12-16T02:05:33,986 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.rules.assembly' is absent from the `packages` configuration. 2024-12-16T02:05:33,986 !! 2024-12-16T02:05:33,987 ******************************************************************************** 2024-12-16T02:05:33,988 ############################ 2024-12-16T02:05:33,988 # Package would be ignored # 2024-12-16T02:05:33,989 ############################ 2024-12-16T02:05:33,990 Python recognizes 'hecatomb.snakemake.workflow.rules.assembly' as an importable package[^1], 2024-12-16T02:05:33,990 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:33,991 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:33,992 package, please make sure that 'hecatomb.snakemake.workflow.rules.assembly' is explicitly added 2024-12-16T02:05:33,992 to the `packages` configuration field. 2024-12-16T02:05:33,994 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:33,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:33,995 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:33,996 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:33,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:33,998 If you don't want 'hecatomb.snakemake.workflow.rules.assembly' to be distributed and are 2024-12-16T02:05:33,999 already explicitly excluding 'hecatomb.snakemake.workflow.rules.assembly' via 2024-12-16T02:05:33,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:33,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,000 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,001 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,002 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,003 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,003 even if it does not contain any `.py` files. 2024-12-16T02:05:34,004 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,004 directory, all directories are treated like packages. 2024-12-16T02:05:34,005 ******************************************************************************** 2024-12-16T02:05:34,006 !! 2024-12-16T02:05:34,006 check.warn(importable) 2024-12-16T02:05:34,007 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.rules.preflight' is absent from the `packages` configuration. 2024-12-16T02:05:34,007 !! 2024-12-16T02:05:34,008 ******************************************************************************** 2024-12-16T02:05:34,008 ############################ 2024-12-16T02:05:34,009 # Package would be ignored # 2024-12-16T02:05:34,010 ############################ 2024-12-16T02:05:34,010 Python recognizes 'hecatomb.snakemake.workflow.rules.preflight' as an importable package[^1], 2024-12-16T02:05:34,011 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:34,012 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:34,012 package, please make sure that 'hecatomb.snakemake.workflow.rules.preflight' is explicitly added 2024-12-16T02:05:34,013 to the `packages` configuration field. 2024-12-16T02:05:34,014 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:34,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:34,015 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:34,016 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:34,018 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:34,019 If you don't want 'hecatomb.snakemake.workflow.rules.preflight' to be distributed and are 2024-12-16T02:05:34,019 already explicitly excluding 'hecatomb.snakemake.workflow.rules.preflight' via 2024-12-16T02:05:34,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:34,020 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,021 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,022 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,025 even if it does not contain any `.py` files. 2024-12-16T02:05:34,026 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,026 directory, all directories are treated like packages. 2024-12-16T02:05:34,027 ******************************************************************************** 2024-12-16T02:05:34,028 !! 2024-12-16T02:05:34,028 check.warn(importable) 2024-12-16T02:05:34,029 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.rules.preprocessing' is absent from the `packages` configuration. 2024-12-16T02:05:34,029 !! 2024-12-16T02:05:34,030 ******************************************************************************** 2024-12-16T02:05:34,030 ############################ 2024-12-16T02:05:34,031 # Package would be ignored # 2024-12-16T02:05:34,031 ############################ 2024-12-16T02:05:34,032 Python recognizes 'hecatomb.snakemake.workflow.rules.preprocessing' as an importable package[^1], 2024-12-16T02:05:34,032 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:34,033 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:34,034 package, please make sure that 'hecatomb.snakemake.workflow.rules.preprocessing' is explicitly added 2024-12-16T02:05:34,034 to the `packages` configuration field. 2024-12-16T02:05:34,035 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:34,035 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:34,036 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:34,037 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:34,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:34,039 If you don't want 'hecatomb.snakemake.workflow.rules.preprocessing' to be distributed and are 2024-12-16T02:05:34,039 already explicitly excluding 'hecatomb.snakemake.workflow.rules.preprocessing' via 2024-12-16T02:05:34,040 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:34,040 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,041 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,042 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,043 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,044 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,044 even if it does not contain any `.py` files. 2024-12-16T02:05:34,045 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,046 directory, all directories are treated like packages. 2024-12-16T02:05:34,046 ******************************************************************************** 2024-12-16T02:05:34,047 !! 2024-12-16T02:05:34,048 check.warn(importable) 2024-12-16T02:05:34,048 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.rules.reports' is absent from the `packages` configuration. 2024-12-16T02:05:34,049 !! 2024-12-16T02:05:34,050 ******************************************************************************** 2024-12-16T02:05:34,050 ############################ 2024-12-16T02:05:34,051 # Package would be ignored # 2024-12-16T02:05:34,051 ############################ 2024-12-16T02:05:34,052 Python recognizes 'hecatomb.snakemake.workflow.rules.reports' as an importable package[^1], 2024-12-16T02:05:34,052 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:34,054 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:34,054 package, please make sure that 'hecatomb.snakemake.workflow.rules.reports' is explicitly added 2024-12-16T02:05:34,055 to the `packages` configuration field. 2024-12-16T02:05:34,056 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:34,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:34,057 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:34,058 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:34,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:34,059 If you don't want 'hecatomb.snakemake.workflow.rules.reports' to be distributed and are 2024-12-16T02:05:34,060 already explicitly excluding 'hecatomb.snakemake.workflow.rules.reports' via 2024-12-16T02:05:34,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:34,061 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,061 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,062 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,065 even if it does not contain any `.py` files. 2024-12-16T02:05:34,066 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,066 directory, all directories are treated like packages. 2024-12-16T02:05:34,067 ******************************************************************************** 2024-12-16T02:05:34,067 !! 2024-12-16T02:05:34,068 check.warn(importable) 2024-12-16T02:05:34,069 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.snakemake.workflow.scripts' is absent from the `packages` configuration. 2024-12-16T02:05:34,069 !! 2024-12-16T02:05:34,070 ******************************************************************************** 2024-12-16T02:05:34,071 ############################ 2024-12-16T02:05:34,072 # Package would be ignored # 2024-12-16T02:05:34,072 ############################ 2024-12-16T02:05:34,073 Python recognizes 'hecatomb.snakemake.workflow.scripts' as an importable package[^1], 2024-12-16T02:05:34,074 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:34,075 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:34,076 package, please make sure that 'hecatomb.snakemake.workflow.scripts' is explicitly added 2024-12-16T02:05:34,076 to the `packages` configuration field. 2024-12-16T02:05:34,077 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:34,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:34,078 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:34,079 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:34,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:34,082 If you don't want 'hecatomb.snakemake.workflow.scripts' to be distributed and are 2024-12-16T02:05:34,082 already explicitly excluding 'hecatomb.snakemake.workflow.scripts' via 2024-12-16T02:05:34,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:34,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,084 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,085 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,086 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,088 even if it does not contain any `.py` files. 2024-12-16T02:05:34,088 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,088 directory, all directories are treated like packages. 2024-12-16T02:05:34,090 ******************************************************************************** 2024-12-16T02:05:34,097 !! 2024-12-16T02:05:34,104 check.warn(importable) 2024-12-16T02:05:34,111 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'hecatomb.test_data' is absent from the `packages` configuration. 2024-12-16T02:05:34,124 !! 2024-12-16T02:05:34,135 ******************************************************************************** 2024-12-16T02:05:34,137 ############################ 2024-12-16T02:05:34,137 # Package would be ignored # 2024-12-16T02:05:34,138 ############################ 2024-12-16T02:05:34,138 Python recognizes 'hecatomb.test_data' as an importable package[^1], 2024-12-16T02:05:34,139 but it is absent from setuptools' `packages` configuration. 2024-12-16T02:05:34,140 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-16T02:05:34,141 package, please make sure that 'hecatomb.test_data' is explicitly added 2024-12-16T02:05:34,144 to the `packages` configuration field. 2024-12-16T02:05:34,145 Alternatively, you can also rely on setuptools' discovery methods 2024-12-16T02:05:34,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-16T02:05:34,146 instead of `find_packages(...)`/`find:`). 2024-12-16T02:05:34,147 You can read more about "package discovery" on setuptools documentation page: 2024-12-16T02:05:34,149 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-16T02:05:34,150 If you don't want 'hecatomb.test_data' to be distributed and are 2024-12-16T02:05:34,150 already explicitly excluding 'hecatomb.test_data' via 2024-12-16T02:05:34,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-16T02:05:34,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-16T02:05:34,152 combination with a more fine grained `package-data` configuration. 2024-12-16T02:05:34,154 You can read more about "package data files" on setuptools documentation page: 2024-12-16T02:05:34,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-16T02:05:34,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-16T02:05:34,157 even if it does not contain any `.py` files. 2024-12-16T02:05:34,158 On the other hand, currently there is no concept of package data 2024-12-16T02:05:34,158 directory, all directories are treated like packages. 2024-12-16T02:05:34,159 ******************************************************************************** 2024-12-16T02:05:34,160 !! 2024-12-16T02:05:34,166 check.warn(importable) 2024-12-16T02:05:34,167 copying hecatomb/hecatomb.CITATION -> build/lib/hecatomb 2024-12-16T02:05:34,174 copying hecatomb/hecatomb.LICENSE -> build/lib/hecatomb 2024-12-16T02:05:34,204 copying hecatomb/hecatomb.VERSION -> build/lib/hecatomb 2024-12-16T02:05:34,216 creating build/lib/hecatomb/snakemake/config 2024-12-16T02:05:34,218 copying hecatomb/snakemake/config/config.yaml -> build/lib/hecatomb/snakemake/config 2024-12-16T02:05:34,219 copying hecatomb/snakemake/config/dbFiles.yaml -> build/lib/hecatomb/snakemake/config 2024-12-16T02:05:34,220 copying hecatomb/snakemake/config/immutable.yaml -> build/lib/hecatomb/snakemake/config 2024-12-16T02:05:34,222 creating build/lib/hecatomb/snakemake/profile/default 2024-12-16T02:05:34,223 copying hecatomb/snakemake/profile/default/config.yaml -> build/lib/hecatomb/snakemake/profile/default 2024-12-16T02:05:34,226 creating build/lib/hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:34,230 copying hecatomb/snakemake/profile/example_slurm/config.yaml -> build/lib/hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:34,231 copying hecatomb/snakemake/profile/example_slurm/slurm-status.py -> build/lib/hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:34,233 creating build/lib/hecatomb/snakemake/workflow 2024-12-16T02:05:34,235 copying hecatomb/snakemake/workflow/AddHost.smk -> build/lib/hecatomb/snakemake/workflow 2024-12-16T02:05:34,236 copying hecatomb/snakemake/workflow/DownloadDB.smk -> build/lib/hecatomb/snakemake/workflow 2024-12-16T02:05:34,238 copying hecatomb/snakemake/workflow/Hecatomb.smk -> build/lib/hecatomb/snakemake/workflow 2024-12-16T02:05:34,239 copying hecatomb/snakemake/workflow/combineOutputs.smk -> build/lib/hecatomb/snakemake/workflow 2024-12-16T02:05:34,240 creating build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,242 copying hecatomb/snakemake/workflow/envs/bbmap.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,242 copying hecatomb/snakemake/workflow/envs/bedtools.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,244 copying hecatomb/snakemake/workflow/envs/canu.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,244 copying hecatomb/snakemake/workflow/envs/curl.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,246 copying hecatomb/snakemake/workflow/envs/koverage.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,246 copying hecatomb/snakemake/workflow/envs/krona.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,247 copying hecatomb/snakemake/workflow/envs/megahit.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,248 copying hecatomb/snakemake/workflow/envs/metaflye.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,248 copying hecatomb/snakemake/workflow/envs/minimap2.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,250 copying hecatomb/snakemake/workflow/envs/mmseqs2.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,251 copying hecatomb/snakemake/workflow/envs/pigz.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,252 copying hecatomb/snakemake/workflow/envs/pysam.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,253 copying hecatomb/snakemake/workflow/envs/samtools.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,254 copying hecatomb/snakemake/workflow/envs/seqkit.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,256 copying hecatomb/snakemake/workflow/envs/trimnami.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:34,258 creating build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,260 copying hecatomb/snakemake/workflow/report/host_removed_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,262 copying hecatomb/snakemake/workflow/report/mapped_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,264 copying hecatomb/snakemake/workflow/report/nucleotide_annotations.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,266 copying hecatomb/snakemake/workflow/report/protein_annotations.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,268 copying hecatomb/snakemake/workflow/report/raw_read_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,271 copying hecatomb/snakemake/workflow/report/sankey.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,272 copying hecatomb/snakemake/workflow/report/step07.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,274 copying hecatomb/snakemake/workflow/report/step08.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,274 copying hecatomb/snakemake/workflow/report/step09.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,276 copying hecatomb/snakemake/workflow/report/step10.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,276 copying hecatomb/snakemake/workflow/report/step11.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,278 copying hecatomb/snakemake/workflow/report/step12.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,278 copying hecatomb/snakemake/workflow/report/step13.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,280 copying hecatomb/snakemake/workflow/report/summary_table.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,280 copying hecatomb/snakemake/workflow/report/tax_level_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,282 copying hecatomb/snakemake/workflow/report/unclassified_seqtable.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-12-16T02:05:34,282 creating build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:34,283 copying hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:34,284 copying hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:34,286 copying hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:34,286 creating build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:34,288 copying hecatomb/snakemake/workflow/rules/assembly/coverage.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:34,289 copying hecatomb/snakemake/workflow/rules/assembly/longreads.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:34,290 copying hecatomb/snakemake/workflow/rules/assembly/shortreads.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:34,292 creating build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:34,293 copying hecatomb/snakemake/workflow/rules/preflight/directories.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:34,294 copying hecatomb/snakemake/workflow/rules/preflight/functions.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:34,296 copying hecatomb/snakemake/workflow/rules/preflight/targets.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:34,297 copying hecatomb/snakemake/workflow/rules/preflight/validate.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:34,299 creating build/lib/hecatomb/snakemake/workflow/rules/preprocessing 2024-12-16T02:05:34,302 copying hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk -> build/lib/hecatomb/snakemake/workflow/rules/preprocessing 2024-12-16T02:05:34,305 creating build/lib/hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:34,317 copying hecatomb/snakemake/workflow/rules/reports/summaries.smk -> build/lib/hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:34,329 copying hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk -> build/lib/hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:34,341 creating build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,345 copying hecatomb/snakemake/workflow/scripts/__init__.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,345 copying hecatomb/snakemake/workflow/scripts/aaBigtable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,346 copying hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,346 copying hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,347 copying hecatomb/snakemake/workflow/scripts/contigCountTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,347 copying hecatomb/snakemake/workflow/scripts/contigKronaText.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,347 copying hecatomb/snakemake/workflow/scripts/contigReadTaxon.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,348 copying hecatomb/snakemake/workflow/scripts/kronaText.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,348 copying hecatomb/snakemake/workflow/scripts/mergeSeqTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,349 copying hecatomb/snakemake/workflow/scripts/ntBigtable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,354 copying hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,354 copying hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,355 copying hecatomb/snakemake/workflow/scripts/orfmFilt.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,355 copying hecatomb/snakemake/workflow/scripts/sankey.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,356 copying hecatomb/snakemake/workflow/scripts/seqPropertyTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,357 copying hecatomb/snakemake/workflow/scripts/taxLevelCounts.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:34,357 creating build/lib/hecatomb/test_data 2024-12-16T02:05:34,358 copying hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,358 copying hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,359 copying hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,360 copying hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,424 copying hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,497 copying hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,573 copying hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,643 copying hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,720 copying hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,791 copying hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,882 copying hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:34,992 copying hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,075 copying hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,163 copying hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,338 copying hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,453 copying hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,542 copying hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,619 copying hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,720 copying hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,788 copying hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,865 copying hecatomb/test_data/test_config.yaml -> build/lib/hecatomb/test_data 2024-12-16T02:05:35,867 file hecatomb.py (for module hecatomb) not found 2024-12-16T02:05:35,895 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-16T02:05:35,896 !! 2024-12-16T02:05:35,897 ******************************************************************************** 2024-12-16T02:05:35,897 Please avoid running ``setup.py`` directly. 2024-12-16T02:05:35,897 Instead, use pypa/build, pypa/installer or other 2024-12-16T02:05:35,898 standards-based tools. 2024-12-16T02:05:35,899 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-16T02:05:35,899 ******************************************************************************** 2024-12-16T02:05:35,900 !! 2024-12-16T02:05:35,901 self.initialize_options() 2024-12-16T02:05:35,923 installing to build/bdist.linux-armv7l/wheel 2024-12-16T02:05:35,923 running install 2024-12-16T02:05:35,948 running install_lib 2024-12-16T02:05:35,975 creating build/bdist.linux-armv7l/wheel 2024-12-16T02:05:35,977 creating build/bdist.linux-armv7l/wheel/hecatomb 2024-12-16T02:05:35,978 copying build/lib/hecatomb/hecatomb.LICENSE -> build/bdist.linux-armv7l/wheel/./hecatomb 2024-12-16T02:05:35,980 copying build/lib/hecatomb/__init__.py -> build/bdist.linux-armv7l/wheel/./hecatomb 2024-12-16T02:05:35,982 creating build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-12-16T02:05:35,984 copying build/lib/hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,061 copying build/lib/hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,137 copying build/lib/hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,215 copying build/lib/hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,285 copying build/lib/hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,353 copying build/lib/hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,427 copying build/lib/hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,507 copying build/lib/hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,592 copying build/lib/hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,663 copying build/lib/hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,751 copying build/lib/hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,866 copying build/lib/hecatomb/test_data/test_config.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:36,869 copying build/lib/hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,053 copying build/lib/hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,351 copying build/lib/hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,468 copying build/lib/hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,546 copying build/lib/hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,607 copying build/lib/hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,683 copying build/lib/hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,763 copying build/lib/hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,836 copying build/lib/hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/./hecatomb/test_data 2024-12-16T02:05:37,915 copying build/lib/hecatomb/__main__.py -> build/bdist.linux-armv7l/wheel/./hecatomb 2024-12-16T02:05:37,918 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake 2024-12-16T02:05:37,920 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-12-16T02:05:37,922 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules 2024-12-16T02:05:37,924 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preprocessing 2024-12-16T02:05:37,925 copying build/lib/hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/preprocessing 2024-12-16T02:05:37,928 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:37,930 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/validate.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:37,932 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/targets.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:37,934 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/functions.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:37,936 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/directories.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/preflight 2024-12-16T02:05:37,938 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:37,939 copying build/lib/hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:37,942 copying build/lib/hecatomb/snakemake/workflow/rules/reports/summaries.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/reports 2024-12-16T02:05:37,944 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:37,946 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/longreads.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:37,948 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/coverage.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:37,950 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/shortreads.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/assembly 2024-12-16T02:05:37,953 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:37,954 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:37,957 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:37,959 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/rules/annotation 2024-12-16T02:05:37,961 copying build/lib/hecatomb/snakemake/workflow/DownloadDB.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow 2024-12-16T02:05:37,963 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,964 copying build/lib/hecatomb/snakemake/workflow/scripts/seqPropertyTable.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,966 copying build/lib/hecatomb/snakemake/workflow/scripts/contigCountTable.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,968 copying build/lib/hecatomb/snakemake/workflow/scripts/kronaText.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,970 copying build/lib/hecatomb/snakemake/workflow/scripts/contigKronaText.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,972 copying build/lib/hecatomb/snakemake/workflow/scripts/mergeSeqTable.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,974 copying build/lib/hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,976 copying build/lib/hecatomb/snakemake/workflow/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,978 copying build/lib/hecatomb/snakemake/workflow/scripts/contigReadTaxon.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,980 copying build/lib/hecatomb/snakemake/workflow/scripts/taxLevelCounts.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,982 copying build/lib/hecatomb/snakemake/workflow/scripts/sankey.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,984 copying build/lib/hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,986 copying build/lib/hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,988 copying build/lib/hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,990 copying build/lib/hecatomb/snakemake/workflow/scripts/orfmFilt.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,992 copying build/lib/hecatomb/snakemake/workflow/scripts/ntBigtable.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,994 copying build/lib/hecatomb/snakemake/workflow/scripts/aaBigtable.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/scripts 2024-12-16T02:05:37,996 copying build/lib/hecatomb/snakemake/workflow/combineOutputs.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow 2024-12-16T02:05:38,000 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,001 copying build/lib/hecatomb/snakemake/workflow/envs/bedtools.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,003 copying build/lib/hecatomb/snakemake/workflow/envs/metaflye.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,005 copying build/lib/hecatomb/snakemake/workflow/envs/canu.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,006 copying build/lib/hecatomb/snakemake/workflow/envs/seqkit.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,008 copying build/lib/hecatomb/snakemake/workflow/envs/bbmap.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,010 copying build/lib/hecatomb/snakemake/workflow/envs/pysam.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,012 copying build/lib/hecatomb/snakemake/workflow/envs/trimnami.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,014 copying build/lib/hecatomb/snakemake/workflow/envs/samtools.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,015 copying build/lib/hecatomb/snakemake/workflow/envs/curl.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,017 copying build/lib/hecatomb/snakemake/workflow/envs/megahit.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,019 copying build/lib/hecatomb/snakemake/workflow/envs/krona.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,021 copying build/lib/hecatomb/snakemake/workflow/envs/mmseqs2.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,023 copying build/lib/hecatomb/snakemake/workflow/envs/pigz.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,024 copying build/lib/hecatomb/snakemake/workflow/envs/minimap2.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,026 copying build/lib/hecatomb/snakemake/workflow/envs/koverage.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/envs 2024-12-16T02:05:38,029 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,030 copying build/lib/hecatomb/snakemake/workflow/report/step13.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,032 copying build/lib/hecatomb/snakemake/workflow/report/nucleotide_annotations.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,034 copying build/lib/hecatomb/snakemake/workflow/report/host_removed_counts.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,035 copying build/lib/hecatomb/snakemake/workflow/report/mapped_counts.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,037 copying build/lib/hecatomb/snakemake/workflow/report/protein_annotations.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,039 copying build/lib/hecatomb/snakemake/workflow/report/sankey.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,041 copying build/lib/hecatomb/snakemake/workflow/report/step08.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,043 copying build/lib/hecatomb/snakemake/workflow/report/tax_level_counts.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,044 copying build/lib/hecatomb/snakemake/workflow/report/summary_table.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,046 copying build/lib/hecatomb/snakemake/workflow/report/step07.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,048 copying build/lib/hecatomb/snakemake/workflow/report/step11.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,050 copying build/lib/hecatomb/snakemake/workflow/report/step10.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,052 copying build/lib/hecatomb/snakemake/workflow/report/step12.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,054 copying build/lib/hecatomb/snakemake/workflow/report/unclassified_seqtable.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,056 copying build/lib/hecatomb/snakemake/workflow/report/step09.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,057 copying build/lib/hecatomb/snakemake/workflow/report/raw_read_counts.rst -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow/report 2024-12-16T02:05:38,059 copying build/lib/hecatomb/snakemake/workflow/AddHost.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow 2024-12-16T02:05:38,061 copying build/lib/hecatomb/snakemake/workflow/Hecatomb.smk -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/workflow 2024-12-16T02:05:38,063 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/config 2024-12-16T02:05:38,064 copying build/lib/hecatomb/snakemake/config/immutable.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/config 2024-12-16T02:05:38,067 copying build/lib/hecatomb/snakemake/config/dbFiles.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/config 2024-12-16T02:05:38,068 copying build/lib/hecatomb/snakemake/config/config.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/config 2024-12-16T02:05:38,071 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile 2024-12-16T02:05:38,072 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:38,074 copying build/lib/hecatomb/snakemake/profile/example_slurm/slurm-status.py -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:38,076 copying build/lib/hecatomb/snakemake/profile/example_slurm/config.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/profile/example_slurm 2024-12-16T02:05:38,078 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/default 2024-12-16T02:05:38,079 copying build/lib/hecatomb/snakemake/profile/default/config.yaml -> build/bdist.linux-armv7l/wheel/./hecatomb/snakemake/profile/default 2024-12-16T02:05:38,081 copying build/lib/hecatomb/hecatomb.VERSION -> build/bdist.linux-armv7l/wheel/./hecatomb 2024-12-16T02:05:38,083 copying build/lib/hecatomb/hecatomb.CITATION -> build/bdist.linux-armv7l/wheel/./hecatomb 2024-12-16T02:05:38,084 running install_data 2024-12-16T02:05:38,113 creating build/bdist.linux-armv7l/wheel/hecatomb-1.3.3.data/data 2024-12-16T02:05:38,115 copying README.md -> build/bdist.linux-armv7l/wheel/hecatomb-1.3.3.data/data/. 2024-12-16T02:05:38,117 running install_egg_info 2024-12-16T02:05:38,151 Copying hecatomb.egg-info to build/bdist.linux-armv7l/wheel/./hecatomb-1.3.3-py3.11.egg-info 2024-12-16T02:05:38,163 running install_scripts 2024-12-16T02:05:38,180 creating build/bdist.linux-armv7l/wheel/hecatomb-1.3.3.dist-info/WHEEL 2024-12-16T02:05:38,182 creating '/tmp/pip-wheel-11ffd848/hecatomb-1.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-16T02:05:38,184 adding 'hecatomb/__init__.py' 2024-12-16T02:05:38,187 adding 'hecatomb/__main__.py' 2024-12-16T02:05:38,188 adding 'hecatomb/hecatomb.CITATION' 2024-12-16T02:05:38,189 adding 'hecatomb/hecatomb.LICENSE' 2024-12-16T02:05:38,191 adding 'hecatomb/hecatomb.VERSION' 2024-12-16T02:05:38,193 adding 'hecatomb/snakemake/config/config.yaml' 2024-12-16T02:05:38,194 adding 'hecatomb/snakemake/config/dbFiles.yaml' 2024-12-16T02:05:38,196 adding 'hecatomb/snakemake/config/immutable.yaml' 2024-12-16T02:05:38,198 adding 'hecatomb/snakemake/profile/default/config.yaml' 2024-12-16T02:05:38,200 adding 'hecatomb/snakemake/profile/example_slurm/config.yaml' 2024-12-16T02:05:38,201 adding 'hecatomb/snakemake/profile/example_slurm/slurm-status.py' 2024-12-16T02:05:38,203 adding 'hecatomb/snakemake/workflow/AddHost.smk' 2024-12-16T02:05:38,204 adding 'hecatomb/snakemake/workflow/DownloadDB.smk' 2024-12-16T02:05:38,206 adding 'hecatomb/snakemake/workflow/Hecatomb.smk' 2024-12-16T02:05:38,208 adding 'hecatomb/snakemake/workflow/combineOutputs.smk' 2024-12-16T02:05:38,210 adding 'hecatomb/snakemake/workflow/envs/bbmap.yaml' 2024-12-16T02:05:38,211 adding 'hecatomb/snakemake/workflow/envs/bedtools.yaml' 2024-12-16T02:05:38,212 adding 'hecatomb/snakemake/workflow/envs/canu.yaml' 2024-12-16T02:05:38,213 adding 'hecatomb/snakemake/workflow/envs/curl.yaml' 2024-12-16T02:05:38,215 adding 'hecatomb/snakemake/workflow/envs/koverage.yaml' 2024-12-16T02:05:38,216 adding 'hecatomb/snakemake/workflow/envs/krona.yaml' 2024-12-16T02:05:38,217 adding 'hecatomb/snakemake/workflow/envs/megahit.yaml' 2024-12-16T02:05:38,218 adding 'hecatomb/snakemake/workflow/envs/metaflye.yaml' 2024-12-16T02:05:38,219 adding 'hecatomb/snakemake/workflow/envs/minimap2.yaml' 2024-12-16T02:05:38,220 adding 'hecatomb/snakemake/workflow/envs/mmseqs2.yaml' 2024-12-16T02:05:38,221 adding 'hecatomb/snakemake/workflow/envs/pigz.yaml' 2024-12-16T02:05:38,222 adding 'hecatomb/snakemake/workflow/envs/pysam.yaml' 2024-12-16T02:05:38,223 adding 'hecatomb/snakemake/workflow/envs/samtools.yaml' 2024-12-16T02:05:38,224 adding 'hecatomb/snakemake/workflow/envs/seqkit.yaml' 2024-12-16T02:05:38,225 adding 'hecatomb/snakemake/workflow/envs/trimnami.yaml' 2024-12-16T02:05:38,227 adding 'hecatomb/snakemake/workflow/report/host_removed_counts.rst' 2024-12-16T02:05:38,228 adding 'hecatomb/snakemake/workflow/report/mapped_counts.rst' 2024-12-16T02:05:38,229 adding 'hecatomb/snakemake/workflow/report/nucleotide_annotations.rst' 2024-12-16T02:05:38,230 adding 'hecatomb/snakemake/workflow/report/protein_annotations.rst' 2024-12-16T02:05:38,231 adding 'hecatomb/snakemake/workflow/report/raw_read_counts.rst' 2024-12-16T02:05:38,232 adding 'hecatomb/snakemake/workflow/report/sankey.rst' 2024-12-16T02:05:38,233 adding 'hecatomb/snakemake/workflow/report/step07.rst' 2024-12-16T02:05:38,235 adding 'hecatomb/snakemake/workflow/report/step08.rst' 2024-12-16T02:05:38,236 adding 'hecatomb/snakemake/workflow/report/step09.rst' 2024-12-16T02:05:38,237 adding 'hecatomb/snakemake/workflow/report/step10.rst' 2024-12-16T02:05:38,238 adding 'hecatomb/snakemake/workflow/report/step11.rst' 2024-12-16T02:05:38,239 adding 'hecatomb/snakemake/workflow/report/step12.rst' 2024-12-16T02:05:38,240 adding 'hecatomb/snakemake/workflow/report/step13.rst' 2024-12-16T02:05:38,242 adding 'hecatomb/snakemake/workflow/report/summary_table.rst' 2024-12-16T02:05:38,243 adding 'hecatomb/snakemake/workflow/report/tax_level_counts.rst' 2024-12-16T02:05:38,244 adding 'hecatomb/snakemake/workflow/report/unclassified_seqtable.rst' 2024-12-16T02:05:38,247 adding 'hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk' 2024-12-16T02:05:38,248 adding 'hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk' 2024-12-16T02:05:38,250 adding 'hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk' 2024-12-16T02:05:38,252 adding 'hecatomb/snakemake/workflow/rules/assembly/coverage.smk' 2024-12-16T02:05:38,254 adding 'hecatomb/snakemake/workflow/rules/assembly/longreads.smk' 2024-12-16T02:05:38,256 adding 'hecatomb/snakemake/workflow/rules/assembly/shortreads.smk' 2024-12-16T02:05:38,258 adding 'hecatomb/snakemake/workflow/rules/preflight/directories.smk' 2024-12-16T02:05:38,259 adding 'hecatomb/snakemake/workflow/rules/preflight/functions.smk' 2024-12-16T02:05:38,261 adding 'hecatomb/snakemake/workflow/rules/preflight/targets.smk' 2024-12-16T02:05:38,263 adding 'hecatomb/snakemake/workflow/rules/preflight/validate.smk' 2024-12-16T02:05:38,265 adding 'hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk' 2024-12-16T02:05:38,266 adding 'hecatomb/snakemake/workflow/rules/reports/summaries.smk' 2024-12-16T02:05:38,268 adding 'hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk' 2024-12-16T02:05:38,270 adding 'hecatomb/snakemake/workflow/scripts/__init__.py' 2024-12-16T02:05:38,271 adding 'hecatomb/snakemake/workflow/scripts/aaBigtable.py' 2024-12-16T02:05:38,273 adding 'hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py' 2024-12-16T02:05:38,274 adding 'hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py' 2024-12-16T02:05:38,275 adding 'hecatomb/snakemake/workflow/scripts/contigCountTable.py' 2024-12-16T02:05:38,276 adding 'hecatomb/snakemake/workflow/scripts/contigKronaText.py' 2024-12-16T02:05:38,278 adding 'hecatomb/snakemake/workflow/scripts/contigReadTaxon.py' 2024-12-16T02:05:38,279 adding 'hecatomb/snakemake/workflow/scripts/kronaText.py' 2024-12-16T02:05:38,280 adding 'hecatomb/snakemake/workflow/scripts/mergeSeqTable.py' 2024-12-16T02:05:38,281 adding 'hecatomb/snakemake/workflow/scripts/ntBigtable.py' 2024-12-16T02:05:38,282 adding 'hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py' 2024-12-16T02:05:38,283 adding 'hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py' 2024-12-16T02:05:38,285 adding 'hecatomb/snakemake/workflow/scripts/orfmFilt.py' 2024-12-16T02:05:38,286 adding 'hecatomb/snakemake/workflow/scripts/sankey.py' 2024-12-16T02:05:38,287 adding 'hecatomb/snakemake/workflow/scripts/seqPropertyTable.py' 2024-12-16T02:05:38,288 adding 'hecatomb/snakemake/workflow/scripts/taxLevelCounts.py' 2024-12-16T02:05:38,801 adding 'hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz' 2024-12-16T02:05:39,379 adding 'hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz' 2024-12-16T02:05:39,957 adding 'hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz' 2024-12-16T02:05:40,539 adding 'hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz' 2024-12-16T02:05:41,069 adding 'hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz' 2024-12-16T02:05:41,640 adding 'hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz' 2024-12-16T02:05:42,183 adding 'hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz' 2024-12-16T02:05:42,772 adding 'hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz' 2024-12-16T02:05:43,330 adding 'hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz' 2024-12-16T02:05:43,944 adding 'hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz' 2024-12-16T02:05:44,464 adding 'hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz' 2024-12-16T02:05:45,098 adding 'hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz' 2024-12-16T02:05:45,602 adding 'hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz' 2024-12-16T02:05:46,236 adding 'hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz' 2024-12-16T02:05:46,771 adding 'hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz' 2024-12-16T02:05:47,372 adding 'hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz' 2024-12-16T02:05:47,934 adding 'hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz' 2024-12-16T02:05:48,504 adding 'hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz' 2024-12-16T02:05:49,024 adding 'hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz' 2024-12-16T02:05:49,614 adding 'hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz' 2024-12-16T02:05:49,646 adding 'hecatomb/test_data/test_config.yaml' 2024-12-16T02:05:49,649 adding 'hecatomb-1.3.3.data/data/README.md' 2024-12-16T02:05:49,651 adding 'hecatomb-1.3.3.dist-info/LICENSE' 2024-12-16T02:05:49,653 adding 'hecatomb-1.3.3.dist-info/METADATA' 2024-12-16T02:05:49,654 adding 'hecatomb-1.3.3.dist-info/WHEEL' 2024-12-16T02:05:49,655 adding 'hecatomb-1.3.3.dist-info/entry_points.txt' 2024-12-16T02:05:49,660 adding 'hecatomb-1.3.3.dist-info/top_level.txt' 2024-12-16T02:05:49,661 adding 'hecatomb-1.3.3.dist-info/RECORD' 2024-12-16T02:05:50,012 removing build/bdist.linux-armv7l/wheel 2024-12-16T02:05:50,190 Building wheel for hecatomb (setup.py): finished with status 'done' 2024-12-16T02:05:52,263 Created wheel for hecatomb: filename=hecatomb-1.3.3-py3-none-any.whl size=98565901 sha256=0f093bc1e24b44f69453da9e86a79fa2b98d56a0ccab9070dbf2c14d34031439 2024-12-16T02:05:52,264 Stored in directory: /tmp/pip-ephem-wheel-cache-6_wx86bp/wheels/82/41/b1/a2ab113d9669a80ed45b1c8d3d27a2de746ee70d2e254e3bc1 2024-12-16T02:05:52,307 Successfully built hecatomb 2024-12-16T02:05:54,567 Removed build tracker: '/tmp/pip-build-tracker-o3fkn84l'