2024-12-16T17:39:22,969 Created temporary directory: /tmp/pip-build-tracker-t1taa3eb 2024-12-16T17:39:22,971 Initialized build tracking at /tmp/pip-build-tracker-t1taa3eb 2024-12-16T17:39:22,971 Created build tracker: /tmp/pip-build-tracker-t1taa3eb 2024-12-16T17:39:22,972 Entered build tracker: /tmp/pip-build-tracker-t1taa3eb 2024-12-16T17:39:22,973 Created temporary directory: /tmp/pip-wheel-8qk5mug8 2024-12-16T17:39:22,977 Created temporary directory: /tmp/pip-ephem-wheel-cache-d21ahrau 2024-12-16T17:39:23,022 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-16T17:39:23,024 2 location(s) to search for versions of nextflow: 2024-12-16T17:39:23,024 * https://pypi.org/simple/nextflow/ 2024-12-16T17:39:23,024 * https://www.piwheels.org/simple/nextflow/ 2024-12-16T17:39:23,025 Fetching project page and analyzing links: https://pypi.org/simple/nextflow/ 2024-12-16T17:39:23,026 Getting page https://pypi.org/simple/nextflow/ 2024-12-16T17:39:23,027 Found index url https://pypi.org/simple/ 2024-12-16T17:39:23,246 Fetched page https://pypi.org/simple/nextflow/ as application/vnd.pypi.simple.v1+json 2024-12-16T17:39:23,251 Found link https://files.pythonhosted.org/packages/d9/3d/162f93ee2c674b19e07782850b8e1044168c3615a9e3e3a9a2d75ad45e8a/nextflow-22.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.1 2024-12-16T17:39:23,251 Found link https://files.pythonhosted.org/packages/0b/00/f6d3c8d84864605147aa79ec17f763fd394f9cfaded672101e3d07bc0345/nextflow-22.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.6 2024-12-16T17:39:23,252 Found link https://files.pythonhosted.org/packages/f5/e8/e0882a1aad0b30b3ac760ae69914ffe986706f12d6539a1c0a08759d0e2b/nextflow-22.10.7.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.7 2024-12-16T17:39:23,253 Found link https://files.pythonhosted.org/packages/d5/eb/d7cd6b33724ea6c37f8dfd4ed4354a06ed66e8a87bb6c50cca26afa3d210/nextflow-23.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.1 2024-12-16T17:39:23,253 Found link https://files.pythonhosted.org/packages/77/eb/6f5e7d09188ac1fedc1b20c5bb3c679302cda22398c49682f8f3213565db/nextflow-23.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.2 2024-12-16T17:39:23,254 Found link https://files.pythonhosted.org/packages/37/0f/cd4e2d76402ebd60994753df846a4581fe1cd2c5c8ecfad4a0758328edf9/nextflow-23.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.3 2024-12-16T17:39:23,254 Found link https://files.pythonhosted.org/packages/7f/a1/ef4e714fdc8de1cf27f285565feea47eec4c85b96fc9063a07fe8215ef83/nextflow-23.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.4 2024-12-16T17:39:23,255 Found link https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.0 2024-12-16T17:39:23,256 Found link https://files.pythonhosted.org/packages/83/af/626ea17fa51a5397849f286ffb2c88e661e1498078b337287c8deee86ba6/nextflow-23.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.1 2024-12-16T17:39:23,256 Found link https://files.pythonhosted.org/packages/c4/9b/9cfb11bf3e9f51644b177c1ef2c635b11e96aedea5a40fd5839d197de7bd/nextflow-24.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.1 2024-12-16T17:39:23,257 Found link https://files.pythonhosted.org/packages/e3/bd/c2bbb7c09b5c88d1521f40025c5ddec825b5c789f374242afbffba08c84b/nextflow-24.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.2 2024-12-16T17:39:23,258 Found link https://files.pythonhosted.org/packages/5d/f7/65b3d0d6efa2d1dc0a74295b0bafac940349fb553ff77aecc2b19341206c/nextflow-24.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.3 2024-12-16T17:39:23,258 Found link https://files.pythonhosted.org/packages/0e/b6/cecfb82e6f67273377507d12df3bed4ac8ddc31a5761c98ce8ab3edf4454/nextflow-24.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.4 2024-12-16T17:39:23,259 Found link https://files.pythonhosted.org/packages/29/52/547b169dda8bf4f6586ee7c81cb6a3fd74ac87ec0cf7d1f23afb417103b0/nextflow-24.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.0 2024-12-16T17:39:23,260 Found link https://files.pythonhosted.org/packages/bc/d7/bc5630f756cafca449c5417b0eb5f7681240355648ca5921dc58c7e070a8/nextflow-24.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.1 2024-12-16T17:39:23,261 Found link https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.2 2024-12-16T17:39:23,262 Found link https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.3 2024-12-16T17:39:23,262 Fetching project page and analyzing links: https://www.piwheels.org/simple/nextflow/ 2024-12-16T17:39:23,263 Getting page https://www.piwheels.org/simple/nextflow/ 2024-12-16T17:39:23,264 Found index url https://www.piwheels.org/simple/ 2024-12-16T17:39:23,480 Fetched page https://www.piwheels.org/simple/nextflow/ as text/html 2024-12-16T17:39:23,485 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.10.2-py3-none-any.whl#sha256=4c9e56e2f1c6029aaa3283a369ff59b75839956b0eab52289593fb174690a066 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,486 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.10.1-py3-none-any.whl#sha256=18308c012437f7f062a471975eac531db34385ed7b3e54589bda05f7a7ce461b (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,486 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.10.0-py3-none-any.whl#sha256=fa91a2cbc9ab218f57b3c4e1d37b95d7bf9622251cc2e278a92594c457838317 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,487 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.4-py3-none-any.whl#sha256=dd8afff5397e3bd0f6f7bb2f50680177e7b244eb90f9b176391034e9ac648894 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,487 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.3-py3-none-any.whl#sha256=939e5cec991c7e0aa855382e5080b22a5a6d4e29ea2fe78489bc82c8efd54618 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,488 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.2-py3-none-any.whl#sha256=e7fec3dff6b4f186a445cb5cfc249c17ac0391558a134e26af1ff85c0e55d3ba (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,488 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-24.4.1-py3-none-any.whl#sha256=de56fffc2db65488a1756d1230de2fdf75ce97d44ab44bd42e5dcd0587b13987 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,489 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.10.1-py3-none-any.whl#sha256=81573f00e62309b377e56977d79c506407a4283adeb34ab3ccf025ee1b840b79 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,490 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.10.0-py3-none-any.whl#sha256=7d68961906a1c33d39660746da229605ecefc580b066c8458ebebf96e563549d (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,490 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.4-py3-none-any.whl#sha256=07d049d85a7b1f1772982e66a45e970378c1b3e4a0aa11e94bff54eea2facfaf (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,491 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.3-py3-none-any.whl#sha256=1d2114b09aec49a7701bb1480ca7ce83e23acd47cdb495a709384efc2a525948 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,491 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.2-py3-none-any.whl#sha256=2056f24035f07ee610923e7a8ec19e52b141789365e337ccf71e27a365a68ce6 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,492 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.1-py3-none-any.whl#sha256=c07e0059e657c9519b9cc0b41d127157c166bf9116bacb750aa5fbf8ef9e9a55 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,493 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.7-py3-none-any.whl#sha256=bd32f54d735936e85cc14b26070f88d5b86f2fda68079680e58d5dcd6472ecdd (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,493 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.6-py3-none-any.whl#sha256=10d80820a116271df8dd0c21f0373823dbf31f40715ebb305d3b85d49f39ad72 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,494 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.1-py3-none-any.whl#sha256=746fe26a0a4083913632e05683071cc2fe41d7780835714a38c1d44116ff9073 (from https://www.piwheels.org/simple/nextflow/) 2024-12-16T17:39:23,494 Skipping link: not a file: https://www.piwheels.org/simple/nextflow/ 2024-12-16T17:39:23,495 Skipping link: not a file: https://pypi.org/simple/nextflow/ 2024-12-16T17:39:23,515 Given no hashes to check 1 links for project 'nextflow': discarding no candidates 2024-12-16T17:39:23,517 Collecting nextflow==24.10.3 2024-12-16T17:39:23,519 Created temporary directory: /tmp/pip-unpack-mrnoezjt 2024-12-16T17:39:23,735 Downloading nextflow-24.10.3.tar.gz (7.8 kB) 2024-12-16T17:39:23,760 Added nextflow==24.10.3 from https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz to build tracker '/tmp/pip-build-tracker-t1taa3eb' 2024-12-16T17:39:23,762 Running setup.py (path:/tmp/pip-wheel-8qk5mug8/nextflow_39fc0c4fe126461cb9ef6c756dde0e97/setup.py) egg_info for package nextflow 2024-12-16T17:39:23,763 Created temporary directory: /tmp/pip-pip-egg-info-owgfh4pf 2024-12-16T17:39:23,763 Preparing metadata (setup.py): started 2024-12-16T17:39:23,765 Running command python setup.py egg_info 2024-12-16T17:39:24,846 running egg_info 2024-12-16T17:39:24,877 creating /tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info 2024-12-16T17:39:24,878 writing /tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/PKG-INFO 2024-12-16T17:39:24,881 writing dependency_links to /tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/dependency_links.txt 2024-12-16T17:39:24,883 writing top-level names to /tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/top_level.txt 2024-12-16T17:39:24,885 writing manifest file '/tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/SOURCES.txt' 2024-12-16T17:39:24,967 reading manifest file '/tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/SOURCES.txt' 2024-12-16T17:39:24,970 writing manifest file '/tmp/pip-pip-egg-info-owgfh4pf/nextflow.egg-info/SOURCES.txt' 2024-12-16T17:39:25,078 Preparing metadata (setup.py): finished with status 'done' 2024-12-16T17:39:25,082 Source in /tmp/pip-wheel-8qk5mug8/nextflow_39fc0c4fe126461cb9ef6c756dde0e97 has version 24.10.3, which satisfies requirement nextflow==24.10.3 from https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz 2024-12-16T17:39:25,083 Removed nextflow==24.10.3 from https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz from build tracker '/tmp/pip-build-tracker-t1taa3eb' 2024-12-16T17:39:25,087 Created temporary directory: /tmp/pip-unpack-krmzm6j8 2024-12-16T17:39:25,088 Created temporary directory: /tmp/pip-unpack-voub087n 2024-12-16T17:39:25,089 Building wheels for collected packages: nextflow 2024-12-16T17:39:25,093 Created temporary directory: /tmp/pip-wheel-t7jv6mrb 2024-12-16T17:39:25,094 Building wheel for nextflow (setup.py): started 2024-12-16T17:39:25,095 Destination directory: /tmp/pip-wheel-t7jv6mrb 2024-12-16T17:39:25,095 Running command python setup.py bdist_wheel 2024-12-16T17:39:26,114 running bdist_wheel 2024-12-16T17:39:26,249 running build 2024-12-16T17:39:26,250 running build_scripts 2024-12-16T17:39:26,250 creating build/scripts-3.11 2024-12-16T17:39:26,252 copying launcher/nextflow -> build/scripts-3.11 2024-12-16T17:39:26,255 changing mode of build/scripts-3.11/nextflow from 644 to 755 2024-12-16T17:39:26,282 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-16T17:39:26,283 !! 2024-12-16T17:39:26,284 ******************************************************************************** 2024-12-16T17:39:26,284 Please avoid running ``setup.py`` directly. 2024-12-16T17:39:26,285 Instead, use pypa/build, pypa/installer or other 2024-12-16T17:39:26,285 standards-based tools. 2024-12-16T17:39:26,286 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-16T17:39:26,287 ******************************************************************************** 2024-12-16T17:39:26,288 !! 2024-12-16T17:39:26,288 self.initialize_options() 2024-12-16T17:39:26,311 installing to build/bdist.linux-armv7l/wheel 2024-12-16T17:39:26,311 running install 2024-12-16T17:39:26,336 running install_egg_info 2024-12-16T17:39:26,398 running egg_info 2024-12-16T17:39:26,425 writing nextflow.egg-info/PKG-INFO 2024-12-16T17:39:26,427 writing dependency_links to nextflow.egg-info/dependency_links.txt 2024-12-16T17:39:26,429 writing top-level names to nextflow.egg-info/top_level.txt 2024-12-16T17:39:26,457 reading manifest file 'nextflow.egg-info/SOURCES.txt' 2024-12-16T17:39:26,462 writing manifest file 'nextflow.egg-info/SOURCES.txt' 2024-12-16T17:39:26,464 Copying nextflow.egg-info to build/bdist.linux-armv7l/wheel/./nextflow-24.10.3-py3.11.egg-info 2024-12-16T17:39:26,472 running install_scripts 2024-12-16T17:39:26,473 creating build/bdist.linux-armv7l/wheel/nextflow-24.10.3.data/scripts 2024-12-16T17:39:26,475 copying build/scripts-3.11/nextflow -> build/bdist.linux-armv7l/wheel/nextflow-24.10.3.data/scripts 2024-12-16T17:39:26,477 changing mode of build/bdist.linux-armv7l/wheel/nextflow-24.10.3.data/scripts/nextflow to 755 2024-12-16T17:39:26,487 creating build/bdist.linux-armv7l/wheel/nextflow-24.10.3.dist-info/WHEEL 2024-12-16T17:39:26,489 creating '/tmp/pip-wheel-t7jv6mrb/nextflow-24.10.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-16T17:39:26,493 adding 'nextflow-24.10.3.data/scripts/nextflow' 2024-12-16T17:39:26,496 adding 'nextflow-24.10.3.dist-info/METADATA' 2024-12-16T17:39:26,497 adding 'nextflow-24.10.3.dist-info/WHEEL' 2024-12-16T17:39:26,498 adding 'nextflow-24.10.3.dist-info/top_level.txt' 2024-12-16T17:39:26,499 adding 'nextflow-24.10.3.dist-info/RECORD' 2024-12-16T17:39:26,500 removing build/bdist.linux-armv7l/wheel 2024-12-16T17:39:26,616 Building wheel for nextflow (setup.py): finished with status 'done' 2024-12-16T17:39:26,619 Created wheel for nextflow: filename=nextflow-24.10.3-py3-none-any.whl size=7930 sha256=1437c2fd819656a0370a4c2660ff8afbb95a0c2130c723843fc4bcb87cf59017 2024-12-16T17:39:26,621 Stored in directory: /tmp/pip-ephem-wheel-cache-d21ahrau/wheels/bb/aa/5d/7aba661566a87e60c27079d067187b973fbad07df6e1d424d8 2024-12-16T17:39:26,632 Successfully built nextflow 2024-12-16T17:39:26,636 Removed build tracker: '/tmp/pip-build-tracker-t1taa3eb'