2024-12-17T08:50:38,439 Created temporary directory: /tmp/pip-build-tracker-7ql8gbms 2024-12-17T08:50:38,441 Initialized build tracking at /tmp/pip-build-tracker-7ql8gbms 2024-12-17T08:50:38,441 Created build tracker: /tmp/pip-build-tracker-7ql8gbms 2024-12-17T08:50:38,442 Entered build tracker: /tmp/pip-build-tracker-7ql8gbms 2024-12-17T08:50:38,442 Created temporary directory: /tmp/pip-wheel-ra7cguqn 2024-12-17T08:50:38,446 Created temporary directory: /tmp/pip-ephem-wheel-cache-r2flv35y 2024-12-17T08:50:38,490 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-17T08:50:38,493 2 location(s) to search for versions of kssdutils: 2024-12-17T08:50:38,493 * https://pypi.org/simple/kssdutils/ 2024-12-17T08:50:38,493 * https://www.piwheels.org/simple/kssdutils/ 2024-12-17T08:50:38,493 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2024-12-17T08:50:38,494 Getting page https://pypi.org/simple/kssdutils/ 2024-12-17T08:50:38,496 Found index url https://pypi.org/simple/ 2024-12-17T08:50:38,715 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2024-12-17T08:50:38,718 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2024-12-17T08:50:38,718 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2024-12-17T08:50:38,719 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2024-12-17T08:50:38,720 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2024-12-17T08:50:38,720 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2024-12-17T08:50:38,721 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2024-12-17T08:50:38,722 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2024-12-17T08:50:38,723 Getting page https://www.piwheels.org/simple/kssdutils/ 2024-12-17T08:50:38,725 Found index url https://www.piwheels.org/simple/ 2024-12-17T08:50:38,885 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2024-12-17T08:50:38,890 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,891 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,891 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,892 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,892 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,893 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,894 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,894 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,895 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,895 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,896 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,896 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,897 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,897 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,898 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,898 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2024-12-17T08:50:38,899 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2024-12-17T08:50:38,900 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2024-12-17T08:50:38,919 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2024-12-17T08:50:38,921 Collecting kssdutils==1.0.6 2024-12-17T08:50:38,923 Created temporary directory: /tmp/pip-unpack-3830sd70 2024-12-17T08:50:39,143 Downloading kssdutils-1.0.6.tar.gz (44 kB) 2024-12-17T08:50:39,242 Added kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-7ql8gbms' 2024-12-17T08:50:39,244 Running setup.py (path:/tmp/pip-wheel-ra7cguqn/kssdutils_608db228510f4460a48db040f0a94177/setup.py) egg_info for package kssdutils 2024-12-17T08:50:39,245 Created temporary directory: /tmp/pip-pip-egg-info-ilkbfrxc 2024-12-17T08:50:39,246 Preparing metadata (setup.py): started 2024-12-17T08:50:39,247 Running command python setup.py egg_info 2024-12-17T08:50:40,358 running egg_info 2024-12-17T08:50:40,388 creating /tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info 2024-12-17T08:50:40,389 writing /tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/PKG-INFO 2024-12-17T08:50:40,392 writing dependency_links to /tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/dependency_links.txt 2024-12-17T08:50:40,394 writing top-level names to /tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/top_level.txt 2024-12-17T08:50:40,396 writing manifest file '/tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/SOURCES.txt' 2024-12-17T08:50:40,507 reading manifest file '/tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/SOURCES.txt' 2024-12-17T08:50:40,509 reading manifest template 'MANIFEST.in' 2024-12-17T08:50:40,517 writing manifest file '/tmp/pip-pip-egg-info-ilkbfrxc/kssdutils.egg-info/SOURCES.txt' 2024-12-17T08:50:40,628 Preparing metadata (setup.py): finished with status 'done' 2024-12-17T08:50:40,631 Source in /tmp/pip-wheel-ra7cguqn/kssdutils_608db228510f4460a48db040f0a94177 has version 1.0.6, which satisfies requirement kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz 2024-12-17T08:50:40,632 Removed kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-7ql8gbms' 2024-12-17T08:50:40,636 Created temporary directory: /tmp/pip-unpack-dn6h_jit 2024-12-17T08:50:40,637 Created temporary directory: /tmp/pip-unpack-uc2dvt2r 2024-12-17T08:50:40,637 Building wheels for collected packages: kssdutils 2024-12-17T08:50:40,641 Created temporary directory: /tmp/pip-wheel-rtzxxiuf 2024-12-17T08:50:40,642 Building wheel for kssdutils (setup.py): started 2024-12-17T08:50:40,643 Destination directory: /tmp/pip-wheel-rtzxxiuf 2024-12-17T08:50:40,644 Running command python setup.py bdist_wheel 2024-12-17T08:50:41,675 running bdist_wheel 2024-12-17T08:50:41,809 running build 2024-12-17T08:50:41,810 running build_py 2024-12-17T08:50:41,839 creating build/lib.linux-armv7l-cpython-311 2024-12-17T08:50:41,841 copying kssdutils.py -> build/lib.linux-armv7l-cpython-311 2024-12-17T08:50:41,843 running egg_info 2024-12-17T08:50:41,871 writing kssdutils.egg-info/PKG-INFO 2024-12-17T08:50:41,874 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2024-12-17T08:50:41,876 writing top-level names to kssdutils.egg-info/top_level.txt 2024-12-17T08:50:41,905 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-12-17T08:50:41,908 reading manifest template 'MANIFEST.in' 2024-12-17T08:50:41,916 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2024-12-17T08:50:41,917 running build_ext 2024-12-17T08:50:42,464 building 'kssdtool' extension 2024-12-17T08:50:42,465 creating build/temp.linux-armv7l-cpython-311 2024-12-17T08:50:42,467 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-12-17T08:50:42,658 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-12-17T08:50:42,658 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-17T08:50:42,659 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-12-17T08:50:42,660 | ^ 2024-12-17T08:50:42,662 co2mco.c: In function ‘co2unitllmco’: 2024-12-17T08:50:42,663 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-17T08:50:42,664 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-12-17T08:50:42,665 | ^ 2024-12-17T08:50:43,368 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-12-17T08:50:43,751 command_composite.c: In function ‘get_species_abundance’: 2024-12-17T08:50:43,751 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-12-17T08:50:43,752 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-12-17T08:50:43,752 | ^~ 2024-12-17T08:50:43,753 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-12-17T08:50:43,754 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-12-17T08:50:43,754 | ^~ 2024-12-17T08:50:43,755 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:43,755 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-17T08:50:43,756 | ^ 2024-12-17T08:50:43,756 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:43,757 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-17T08:50:43,758 | ^~~~~~~~~~ 2024-12-17T08:50:43,758 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-17T08:50:43,759 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-12-17T08:50:43,760 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:43,761 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:43,761 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-17T08:50:43,762 | ^ 2024-12-17T08:50:43,764 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:43,764 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-17T08:50:43,765 | ^~~~~~~~~~ 2024-12-17T08:50:43,765 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-17T08:50:43,766 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-12-17T08:50:43,767 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:43,767 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:43,768 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,769 | ^ 2024-12-17T08:50:43,770 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:43,770 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,771 | ^~~~~~~~~~ 2024-12-17T08:50:43,772 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-17T08:50:43,773 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:43,774 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:43,775 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-17T08:50:43,775 | ^ 2024-12-17T08:50:43,776 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:43,776 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-17T08:50:43,777 | ^~~~~~~~~~ 2024-12-17T08:50:43,778 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-12-17T08:50:43,778 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-12-17T08:50:43,779 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:43,779 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:43,780 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,780 | ^ 2024-12-17T08:50:43,781 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:43,782 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,782 | ^~~~~~~~~~~~ 2024-12-17T08:50:43,783 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-12-17T08:50:43,784 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-12-17T08:50:43,784 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,010 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-12-17T08:50:44,239 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-12-17T08:50:44,240 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,241 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,242 | ~~^ 2024-12-17T08:50:44,242 | | 2024-12-17T08:50:44,243 | long unsigned int 2024-12-17T08:50:44,243 | %u 2024-12-17T08:50:44,244 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,244 | ~~~~~~~ 2024-12-17T08:50:44,245 | | 2024-12-17T08:50:44,246 | size_t {aka unsigned int} 2024-12-17T08:50:44,246 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,247 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,248 | ~~^ 2024-12-17T08:50:44,249 | | 2024-12-17T08:50:44,249 | long unsigned int 2024-12-17T08:50:44,250 | %u 2024-12-17T08:50:44,251 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,251 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-17T08:50:44,252 | ~~~~~~~~~ 2024-12-17T08:50:44,252 | | 2024-12-17T08:50:44,253 | size_t {aka unsigned int} 2024-12-17T08:50:44,253 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-17T08:50:44,254 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,254 | ~~^ 2024-12-17T08:50:44,255 | | 2024-12-17T08:50:44,255 | long unsigned int 2024-12-17T08:50:44,256 | %u 2024-12-17T08:50:44,256 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,257 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-17T08:50:44,258 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,259 | | 2024-12-17T08:50:44,259 | unsigned int 2024-12-17T08:50:44,260 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-17T08:50:44,260 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-12-17T08:50:44,261 | ^ 2024-12-17T08:50:44,261 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-12-17T08:50:44,262 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,263 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-17T08:50:44,263 | ~~^ ~~~~~~~ 2024-12-17T08:50:44,264 | | | 2024-12-17T08:50:44,264 | long unsigned int size_t {aka unsigned int} 2024-12-17T08:50:44,265 | %u 2024-12-17T08:50:44,266 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,267 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-17T08:50:44,267 | ~~^ 2024-12-17T08:50:44,268 | | 2024-12-17T08:50:44,269 | long unsigned int 2024-12-17T08:50:44,269 | %u 2024-12-17T08:50:44,270 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-12-17T08:50:44,270 | ~~~~~~~~~ 2024-12-17T08:50:44,271 | | 2024-12-17T08:50:44,271 | size_t {aka unsigned int} 2024-12-17T08:50:44,272 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-17T08:50:44,272 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-12-17T08:50:44,273 | ~~^ 2024-12-17T08:50:44,274 | | 2024-12-17T08:50:44,274 | long unsigned int 2024-12-17T08:50:44,275 | %u 2024-12-17T08:50:44,275 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-12-17T08:50:44,276 865 | (size_t) b * unitsz_distf_mapped); 2024-12-17T08:50:44,277 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,278 | | 2024-12-17T08:50:44,278 | unsigned int 2024-12-17T08:50:44,279 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-12-17T08:50:44,280 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-12-17T08:50:44,280 | ^~~~~~~ 2024-12-17T08:50:44,281 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-12-17T08:50:44,282 809 | struct stat cbd_fcode_stat; 2024-12-17T08:50:44,282 | ^~~~~~~~~~~~~~ 2024-12-17T08:50:44,283 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-12-17T08:50:44,283 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-12-17T08:50:44,284 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,285 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-12-17T08:50:44,285 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-12-17T08:50:44,286 | ^~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,286 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-12-17T08:50:44,287 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,288 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,288 | ~~^ 2024-12-17T08:50:44,289 | | 2024-12-17T08:50:44,290 | long unsigned int 2024-12-17T08:50:44,291 | %u 2024-12-17T08:50:44,291 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,292 | ~~~~~~~ 2024-12-17T08:50:44,293 | | 2024-12-17T08:50:44,293 | size_t {aka unsigned int} 2024-12-17T08:50:44,294 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:44,294 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,295 | ~~^ 2024-12-17T08:50:44,295 | | 2024-12-17T08:50:44,296 | long unsigned int 2024-12-17T08:50:44,296 | %u 2024-12-17T08:50:44,297 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,298 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-17T08:50:44,298 | ~~~~~~~~~ 2024-12-17T08:50:44,299 | | 2024-12-17T08:50:44,299 | size_t {aka unsigned int} 2024-12-17T08:50:44,300 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-12-17T08:50:44,300 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-12-17T08:50:44,301 | ~~^ 2024-12-17T08:50:44,302 | | 2024-12-17T08:50:44,302 | long unsigned int 2024-12-17T08:50:44,303 | %u 2024-12-17T08:50:44,304 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-12-17T08:50:44,304 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-12-17T08:50:44,305 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,306 | | 2024-12-17T08:50:44,307 | unsigned int 2024-12-17T08:50:44,307 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,308 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-12-17T08:50:44,309 | ^ 2024-12-17T08:50:44,309 command_dist.c: In function ‘mco_co_dist_core’: 2024-12-17T08:50:44,310 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-17T08:50:44,311 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-12-17T08:50:44,311 | ^ 2024-12-17T08:50:44,312 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-12-17T08:50:44,313 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,314 1239 | for (int rid = 0; rid < ref_num; rid++) 2024-12-17T08:50:44,314 | ^ 2024-12-17T08:50:44,315 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,316 1245 | for (int rid = 0; rid < ref_num; rid++) { 2024-12-17T08:50:44,316 | ^ 2024-12-17T08:50:44,317 command_dist.c: In function ‘dist_print_nobin’: 2024-12-17T08:50:44,317 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,318 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-12-17T08:50:44,318 | ^ 2024-12-17T08:50:44,319 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,320 1356 | for (int rid = 0; rid < ref_num; rid++) { 2024-12-17T08:50:44,320 | ^ 2024-12-17T08:50:44,321 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-12-17T08:50:44,321 1382 | for (int rid = 0; rid < ref_num; rid++) 2024-12-17T08:50:44,322 | ^ 2024-12-17T08:50:44,682 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-12-17T08:50:44,682 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-12-17T08:50:44,683 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-12-17T08:50:44,684 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:44,684 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2024-12-17T08:50:44,685 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-12-17T08:50:44,686 | ^~~~~~~~~~~~ 2024-12-17T08:50:45,518 command_dist.c: In function ‘get_dim_shuffle’: 2024-12-17T08:50:45,519 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-12-17T08:50:45,520 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-12-17T08:50:45,520 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:45,521 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-12-17T08:50:45,522 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-12-17T08:50:45,522 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,421 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-12-17T08:50:46,422 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:46,422 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,423 | ^~ ~~~~~~~~~ 2024-12-17T08:50:46,423 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-17T08:50:46,424 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,425 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,425 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,426 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,426 | ^~~~~~~~~~~~~~~ 2024-12-17T08:50:46,427 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-17T08:50:46,428 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,428 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,429 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,429 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,430 | ^~~~~~~~~~~ 2024-12-17T08:50:46,430 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:46,431 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,431 | ^~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,432 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-12-17T08:50:46,432 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,433 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,434 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,434 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,435 | ^~~~~ 2024-12-17T08:50:46,435 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:46,436 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,437 | ^~~~~~~~~~~ 2024-12-17T08:50:46,438 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-17T08:50:46,439 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,439 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,671 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-12-17T08:50:46,672 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:46,673 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,674 | ^~ ~~~~~~~~~ 2024-12-17T08:50:46,674 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-17T08:50:46,675 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,676 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,676 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,677 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,678 | ^~~~~~~~~~~~~~~ 2024-12-17T08:50:46,678 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-17T08:50:46,679 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,679 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,680 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,680 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-17T08:50:46,681 | ^~~~~~~~~~~~~ 2024-12-17T08:50:46,682 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-17T08:50:46,682 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-17T08:50:46,683 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,683 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:46,684 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-17T08:50:46,684 | ^ 2024-12-17T08:50:46,685 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2024-12-17T08:50:46,686 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-17T08:50:46,686 | ^~~~~~~~~~ 2024-12-17T08:50:46,687 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-12-17T08:50:46,687 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-12-17T08:50:46,688 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,688 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:46,689 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-17T08:50:46,690 | ^ 2024-12-17T08:50:46,690 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2024-12-17T08:50:46,691 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-17T08:50:46,692 | ^~~~~~~~~~ 2024-12-17T08:50:46,693 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-12-17T08:50:46,694 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-12-17T08:50:46,695 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,952 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-12-17T08:50:46,953 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:46,954 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,954 | ^~ ~~~~~~~~~ 2024-12-17T08:50:46,955 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-12-17T08:50:46,955 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-12-17T08:50:46,956 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,957 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,957 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,958 | ^~~~~~~~~~~~~~~ 2024-12-17T08:50:46,958 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-12-17T08:50:46,959 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-12-17T08:50:46,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,960 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,961 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-17T08:50:46,961 | ^~~~~~~~~~~~~ 2024-12-17T08:50:46,962 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-17T08:50:46,962 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-12-17T08:50:46,963 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,964 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,964 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,965 | ^~~~~~~~~~~ 2024-12-17T08:50:46,965 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:46,966 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,966 | ^~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,967 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-12-17T08:50:46,967 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-12-17T08:50:46,968 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:46,968 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-12-17T08:50:46,969 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,970 | ^~~~~ 2024-12-17T08:50:46,970 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:46,971 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,971 | ^~~~~~~~~~~ 2024-12-17T08:50:46,972 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-17T08:50:46,973 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-12-17T08:50:46,973 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:47,241 command_dist.c: In function ‘combine_queries’: 2024-12-17T08:50:47,243 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:47,243 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-12-17T08:50:47,244 | ^ 2024-12-17T08:50:47,244 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:47,245 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-12-17T08:50:47,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:47,246 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:47,247 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-12-17T08:50:47,247 | ^ 2024-12-17T08:50:47,248 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:47,248 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-12-17T08:50:47,249 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:47,250 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:47,251 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-12-17T08:50:47,251 | ^~ ~~~~~~~~ 2024-12-17T08:50:47,252 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-12-17T08:50:47,253 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-12-17T08:50:47,254 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:47,737 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-12-17T08:50:47,913 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-12-17T08:50:48,113 command_set.c: In function ‘sketch_operate’: 2024-12-17T08:50:48,114 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-12-17T08:50:48,115 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-12-17T08:50:48,116 | ^ 2024-12-17T08:50:48,131 command_set.c: In function ‘combin_subset_pans’: 2024-12-17T08:50:48,132 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-12-17T08:50:48,132 457 | free(co_dstat_fpath); 2024-12-17T08:50:48,133 | ^~~~~~~~~~~~~~ 2024-12-17T08:50:48,134 In file included from kssdheaders/global_basic.h:159, 2024-12-17T08:50:48,134 from command_set.c:15: 2024-12-17T08:50:48,135 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-12-17T08:50:48,135 568 | extern void free (void *__ptr) __THROW; 2024-12-17T08:50:48,136 | ~~~~~~^~~~~ 2024-12-17T08:50:48,139 command_set.c: In function ‘grouping_genomes’: 2024-12-17T08:50:48,140 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-12-17T08:50:48,140 562 | free(co_dstat_fpath); 2024-12-17T08:50:48,141 | ^~~~~~~~~~~~~~ 2024-12-17T08:50:48,142 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-12-17T08:50:48,143 568 | extern void free (void *__ptr) __THROW; 2024-12-17T08:50:48,143 | ~~~~~~^~~~~ 2024-12-17T08:50:48,308 command_set.c: In function ‘sketch_union’: 2024-12-17T08:50:48,309 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:48,310 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,310 | ^ 2024-12-17T08:50:48,311 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:48,312 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,312 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,313 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,314 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,314 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,315 command_set.c:82:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,315 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,316 | ^~~~~~~~~~ 2024-12-17T08:50:48,317 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:48,317 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,319 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,320 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-17T08:50:48,320 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:48,321 command_set.c:92:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,322 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-17T08:50:48,322 | ^~~~~~~~~~ 2024-12-17T08:50:48,322 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-17T08:50:48,323 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-12-17T08:50:48,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,441 command_set.c: In function ‘sketch_operate’: 2024-12-17T08:50:48,442 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,443 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-17T08:50:48,444 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:48,445 command_set.c:153:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,446 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-17T08:50:48,447 | ^~~~~~~~~~ 2024-12-17T08:50:48,448 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-12-17T08:50:48,449 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-12-17T08:50:48,451 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,452 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,454 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-17T08:50:48,455 | ^~ ~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,457 command_set.c:155:29: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,459 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-17T08:50:48,461 | ^~~~~~~~~~ 2024-12-17T08:50:48,461 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-12-17T08:50:48,462 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-12-17T08:50:48,463 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,463 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,464 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,465 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,465 command_set.c:165:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,466 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,466 | ^~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,467 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:48,468 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,468 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,469 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,470 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,471 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,471 command_set.c:169:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,472 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,472 | ^~~~~~~~~~ 2024-12-17T08:50:48,473 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:48,473 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-12-17T08:50:48,474 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,474 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,475 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,475 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,476 command_set.c:174:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,476 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,477 | ^~~~~~~~~~ 2024-12-17T08:50:48,477 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:48,478 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,479 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,479 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,480 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,481 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,481 command_set.c:187:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,482 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,483 | ^~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,483 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:48,484 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-12-17T08:50:48,485 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,485 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:48,486 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,486 | ^ 2024-12-17T08:50:48,487 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:48,488 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,630 command_set.c: In function ‘uniq_sketch_union’: 2024-12-17T08:50:48,631 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:48,632 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-12-17T08:50:48,632 | ^ 2024-12-17T08:50:48,633 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-12-17T08:50:48,634 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-12-17T08:50:48,635 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,635 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:48,636 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,636 | ^ 2024-12-17T08:50:48,637 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:48,638 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,638 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,639 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,639 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,640 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,640 command_set.c:247:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,641 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,641 | ^~~~~~~~~~ 2024-12-17T08:50:48,642 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:48,642 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-12-17T08:50:48,643 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,643 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,644 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-17T08:50:48,645 | ^~ ~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,646 command_set.c:259:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:48,647 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-17T08:50:48,647 | ^~~~~~~~~~ 2024-12-17T08:50:48,648 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-12-17T08:50:48,649 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-12-17T08:50:48,649 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,782 command_set.c: In function ‘combin_pans’: 2024-12-17T08:50:48,782 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,783 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:48,784 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:48,784 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2024-12-17T08:50:48,785 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:48,785 | ^~~~~~~~~~ 2024-12-17T08:50:48,786 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-12-17T08:50:48,786 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:48,787 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,788 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:48,790 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:48,791 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:48,791 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2024-12-17T08:50:48,792 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:48,793 | ^~~~~~~~~~ 2024-12-17T08:50:48,793 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-12-17T08:50:48,794 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:48,795 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:48,795 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:48,796 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,796 | ^ 2024-12-17T08:50:48,797 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:48,804 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:48,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,003 command_set.c: In function ‘combin_subset_pans’: 2024-12-17T08:50:49,004 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,004 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,005 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:49,006 command_set.c:469:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,006 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,007 | ^~~~~~~~~~ 2024-12-17T08:50:49,007 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:49,008 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,009 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,010 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,011 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:49,011 command_set.c:475:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,012 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,012 | ^~~~~~~~~~ 2024-12-17T08:50:49,013 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:49,014 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,014 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,015 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,016 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,016 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:49,017 command_set.c:481:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,018 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,018 | ^~~~~~~~~~ 2024-12-17T08:50:49,019 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:49,020 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,022 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,022 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,023 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:49,023 command_set.c:512:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,024 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,024 | ^~~~~~~~~~ 2024-12-17T08:50:49,024 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:49,025 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,025 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,026 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:49,026 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:49,027 | ^ 2024-12-17T08:50:49,027 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:49,028 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:49,028 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,254 command_set.c: In function ‘grouping_genomes’: 2024-12-17T08:50:49,255 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,256 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,256 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:49,257 command_set.c:574:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,258 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,258 | ^~~~~~~~~~ 2024-12-17T08:50:49,259 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:49,259 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-12-17T08:50:49,260 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,261 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,261 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,262 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:49,262 command_set.c:580:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,263 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,264 | ^~~~~~~~~~ 2024-12-17T08:50:49,264 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:49,265 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-12-17T08:50:49,265 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,266 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,266 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,267 | ^~ ~~~~~~~~~~~ 2024-12-17T08:50:49,268 command_set.c:612:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,269 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,269 | ^~~~~~~~~~ 2024-12-17T08:50:49,270 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-12-17T08:50:49,270 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-12-17T08:50:49,270 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,271 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-12-17T08:50:49,271 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,272 | ^~ ~~~~~~~~~~ 2024-12-17T08:50:49,272 command_set.c:634:25: note: directive argument in the range [-2147483644, 2147483646] 2024-12-17T08:50:49,273 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,273 | ^~~~~~~~~~ 2024-12-17T08:50:49,274 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-12-17T08:50:49,274 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-12-17T08:50:49,275 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,275 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-12-17T08:50:49,276 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:49,277 | ^ 2024-12-17T08:50:49,277 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-12-17T08:50:49,278 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-12-17T08:50:49,278 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-12-17T08:50:49,567 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-12-17T08:50:49,895 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-12-17T08:50:50,124 global_basic.c: In function ‘organize_infile_list’: 2024-12-17T08:50:50,125 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-12-17T08:50:50,126 195 | while (isspace(*buf)) buf++; 2024-12-17T08:50:50,127 | ^~~~~~~ 2024-12-17T08:50:50,127 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-12-17T08:50:50,128 34 | #include 2024-12-17T08:50:50,129 +++ |+#include 2024-12-17T08:50:50,129 35 | 2024-12-17T08:50:50,130 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:50,131 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-12-17T08:50:50,131 | ~~^ 2024-12-17T08:50:50,132 | | 2024-12-17T08:50:50,133 | long unsigned int 2024-12-17T08:50:50,134 | %u 2024-12-17T08:50:50,135 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-12-17T08:50:50,135 | ~~~~~~~~~~~ 2024-12-17T08:50:50,136 | | 2024-12-17T08:50:50,136 | size_t {aka unsigned int} 2024-12-17T08:50:50,137 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-12-17T08:50:50,137 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-12-17T08:50:50,138 | ~~^ 2024-12-17T08:50:50,138 | | 2024-12-17T08:50:50,139 | long unsigned int 2024-12-17T08:50:50,140 | %u 2024-12-17T08:50:50,141 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-12-17T08:50:50,142 | ~~~~~~~~~~~ 2024-12-17T08:50:50,142 | | 2024-12-17T08:50:50,143 | size_t {aka unsigned int} 2024-12-17T08:50:50,923 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-12-17T08:50:51,103 iseq2comem.c: In function ‘reads2mco’: 2024-12-17T08:50:51,103 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,104 156 | if (base > TL) { 2024-12-17T08:50:51,105 | ^ 2024-12-17T08:50:51,106 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,106 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,107 | ^~ 2024-12-17T08:50:51,108 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,108 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,109 | ^ 2024-12-17T08:50:51,110 iseq2comem.c: In function ‘fasta2co’: 2024-12-17T08:50:51,110 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,111 239 | if (base > TL) { 2024-12-17T08:50:51,111 | ^ 2024-12-17T08:50:51,112 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,113 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,113 | ^~ 2024-12-17T08:50:51,114 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,115 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,115 | ^ 2024-12-17T08:50:51,116 iseq2comem.c: In function ‘fastq2co’: 2024-12-17T08:50:51,117 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-12-17T08:50:51,117 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-12-17T08:50:51,118 | ^~ 2024-12-17T08:50:51,119 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,119 318 | if (base > TL) { 2024-12-17T08:50:51,120 | ^ 2024-12-17T08:50:51,120 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,121 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,121 | ^~ 2024-12-17T08:50:51,122 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,122 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,123 | ^ 2024-12-17T08:50:51,123 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,124 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-12-17T08:50:51,125 | ^ 2024-12-17T08:50:51,126 iseq2comem.c: In function ‘fastq2koc’: 2024-12-17T08:50:51,126 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,127 402 | if (base > TL) { 2024-12-17T08:50:51,128 | ^ 2024-12-17T08:50:51,128 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,130 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,131 | ^~ 2024-12-17T08:50:51,132 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,132 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,133 | ^ 2024-12-17T08:50:51,134 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-12-17T08:50:51,134 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,135 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,136 | ^~ 2024-12-17T08:50:51,136 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-12-17T08:50:51,137 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-12-17T08:50:51,138 | ^ 2024-12-17T08:50:52,474 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-12-17T08:50:52,534 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-12-17T08:50:52,662 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-12-17T08:50:53,079 pykssd.c: In function ‘py_dist_dispatch’: 2024-12-17T08:50:53,079 pykssd.c:335:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-12-17T08:50:53,080 335 | int state1 = dist_dispatch(&dist_opt_val1); 2024-12-17T08:50:53,081 | ^~~~~~ 2024-12-17T08:50:53,081 pykssd.c:397:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-12-17T08:50:53,082 397 | int state2 = dist_dispatch(&dist_opt_val2); 2024-12-17T08:50:53,082 | ^~~~~~ 2024-12-17T08:50:53,083 pykssd.c:531:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-12-17T08:50:53,083 531 | int state4 = dist_dispatch(&dist_opt_val4); 2024-12-17T08:50:53,084 | ^~~~~~ 2024-12-17T08:50:53,735 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-12-17T08:50:53,960 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-17T08:50:53,960 !! 2024-12-17T08:50:53,962 ******************************************************************************** 2024-12-17T08:50:53,962 Please avoid running ``setup.py`` directly. 2024-12-17T08:50:53,963 Instead, use pypa/build, pypa/installer or other 2024-12-17T08:50:53,963 standards-based tools. 2024-12-17T08:50:53,964 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-17T08:50:53,965 ******************************************************************************** 2024-12-17T08:50:53,966 !! 2024-12-17T08:50:53,967 self.initialize_options() 2024-12-17T08:50:53,987 installing to build/bdist.linux-armv7l/wheel 2024-12-17T08:50:53,988 running install 2024-12-17T08:50:54,012 running install_lib 2024-12-17T08:50:54,039 creating build/bdist.linux-armv7l/wheel 2024-12-17T08:50:54,040 copying build/lib.linux-armv7l-cpython-311/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2024-12-17T08:50:54,043 copying build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-12-17T08:50:54,051 running install_egg_info 2024-12-17T08:50:54,090 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.0.6-py3.11.egg-info 2024-12-17T08:50:54,099 running install_scripts 2024-12-17T08:50:54,154 creating build/bdist.linux-armv7l/wheel/kssdutils-1.0.6.dist-info/WHEEL 2024-12-17T08:50:54,157 creating '/tmp/pip-wheel-rtzxxiuf/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-17T08:50:54,241 adding 'kssdtool.cpython-311-arm-linux-gnueabihf.so' 2024-12-17T08:50:54,245 adding 'kssdutils.py' 2024-12-17T08:50:54,247 adding 'kssdutils-1.0.6.dist-info/METADATA' 2024-12-17T08:50:54,248 adding 'kssdutils-1.0.6.dist-info/WHEEL' 2024-12-17T08:50:54,250 adding 'kssdutils-1.0.6.dist-info/dependency_links.txt' 2024-12-17T08:50:54,250 adding 'kssdutils-1.0.6.dist-info/top_level.txt' 2024-12-17T08:50:54,251 adding 'kssdutils-1.0.6.dist-info/RECORD' 2024-12-17T08:50:54,256 removing build/bdist.linux-armv7l/wheel 2024-12-17T08:50:54,406 Building wheel for kssdutils (setup.py): finished with status 'done' 2024-12-17T08:50:54,410 Created wheel for kssdutils: filename=kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl size=178803 sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 2024-12-17T08:50:54,411 Stored in directory: /tmp/pip-ephem-wheel-cache-r2flv35y/wheels/1b/5a/49/50991ace754b92d51658f86004f36ac9c4c34965fd3f09cf69 2024-12-17T08:50:54,420 Successfully built kssdutils 2024-12-17T08:50:54,428 Removed build tracker: '/tmp/pip-build-tracker-7ql8gbms'