2024-12-18T14:20:45,870 Created temporary directory: /tmp/pip-build-tracker-awr08ag0 2024-12-18T14:20:45,871 Initialized build tracking at /tmp/pip-build-tracker-awr08ag0 2024-12-18T14:20:45,872 Created build tracker: /tmp/pip-build-tracker-awr08ag0 2024-12-18T14:20:45,872 Entered build tracker: /tmp/pip-build-tracker-awr08ag0 2024-12-18T14:20:45,873 Created temporary directory: /tmp/pip-wheel-mb9xqiyv 2024-12-18T14:20:45,877 Created temporary directory: /tmp/pip-ephem-wheel-cache-tmjgnjka 2024-12-18T14:20:45,921 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-18T14:20:45,924 2 location(s) to search for versions of pyfus-lib: 2024-12-18T14:20:45,924 * https://pypi.org/simple/pyfus-lib/ 2024-12-18T14:20:45,924 * https://www.piwheels.org/simple/pyfus-lib/ 2024-12-18T14:20:45,924 Fetching project page and analyzing links: https://pypi.org/simple/pyfus-lib/ 2024-12-18T14:20:45,925 Getting page https://pypi.org/simple/pyfus-lib/ 2024-12-18T14:20:45,927 Found index url https://pypi.org/simple/ 2024-12-18T14:20:46,149 Fetched page https://pypi.org/simple/pyfus-lib/ as application/vnd.pypi.simple.v1+json 2024-12-18T14:20:46,153 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/7a/7b/5e426ebb52d19e6fdad724e735bf2dd85f120412c5c38760c70a97019859/pyfus_lib-0.1.4-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,154 Found link https://files.pythonhosted.org/packages/19/75/44e13edf654b1ffdec76dd697030fd65e18f9fe6dbacf7e62933a2380ccc/pyfus_lib-0.1.4.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.4 2024-12-18T14:20:46,155 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/d3/52/a6afb452d218fe18196807c2d648f2317303b3f79895ab3fba2ccf91d665/pyfus_lib-0.1.5-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,156 Found link https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.5 2024-12-18T14:20:46,157 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/25/22/43026bf146e6e45cdaebc51d2b0c055b1fd6ad1a10df5ac4b7eddac04fbc/pyfus_lib-1.0.0-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,157 Found link https://files.pythonhosted.org/packages/9d/1f/9d86894f4504a8f9edb0a88d84dff992ede89df443541c1d5c6e279c5752/pyfus_lib-1.0.0.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.0 2024-12-18T14:20:46,158 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/3f/e9/8264241b7480bf91f01ed4823f553b099d35dd52ee30fa445e25eb5f0de7/pyfus_lib-1.0.1-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,159 Found link https://files.pythonhosted.org/packages/fc/95/26e51a25423d590f2c390761b07193fa36b6ba64e4a5cba4ce23ac7378cd/pyfus_lib-1.0.1.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.1 2024-12-18T14:20:46,160 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/f4/55/73530ccaa603396a0354cf1e453a1a6ef66e326dd03453a240eb9590dea8/pyfus_lib-1.0.2-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,160 Found link https://files.pythonhosted.org/packages/fe/99/c0303242af9045cee27c95f8bc900084fa1fddcb4c0d763301ff14b7c4d7/pyfus_lib-1.0.2.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.2 2024-12-18T14:20:46,161 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/72/48/a649eb2c9491bd226191c0a3335ddfb35a3d119921c03c0b7f3cadad7577/pyfus_lib-1.0.3-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-12-18T14:20:46,162 Found link https://files.pythonhosted.org/packages/13/98/5f67650d15dbfd1adacc17fd28af717fb774895ee34160e4ffe741446b43/pyfus_lib-1.0.3.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 1.0.3 2024-12-18T14:20:46,163 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-18T14:20:46,163 Getting page https://www.piwheels.org/simple/pyfus-lib/ 2024-12-18T14:20:46,166 Found index url https://www.piwheels.org/simple/ 2024-12-18T14:20:46,333 Fetched page https://www.piwheels.org/simple/pyfus-lib/ as text/html 2024-12-18T14:20:46,336 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.2-py3-none-any.whl#sha256=eec9f1199826260380e19b6aeecd749960914bafd7ecd16e888041735fb92f4f (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-18T14:20:46,336 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.1-py3-none-any.whl#sha256=7415bd6384778e4b778c48b52c64998c02e7f6c37219d9a257bf39ea133da9f8 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-18T14:20:46,337 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-1.0.0-py3-none-any.whl#sha256=c9a5bf28f231c19a52c8c5c14154175bf79ea07b0a8fec22d4940ed3353d4ecc (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-18T14:20:46,337 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.5-py3-none-any.whl#sha256=ed070f1a51d3fd23c542b61c6a6c2cb863ebf9d11a2f15ebc3ab7c300cf882e7 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-18T14:20:46,338 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.4-py3-none-any.whl#sha256=2984a83dbf3708f0a6f63c5c7fe47a35885eabbf0fd460372100e23b189c9126 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-12-18T14:20:46,338 Skipping link: not a file: https://www.piwheels.org/simple/pyfus-lib/ 2024-12-18T14:20:46,339 Skipping link: not a file: https://pypi.org/simple/pyfus-lib/ 2024-12-18T14:20:46,358 Given no hashes to check 1 links for project 'pyfus-lib': discarding no candidates 2024-12-18T14:20:46,360 Collecting pyfus-lib==1.0.3 2024-12-18T14:20:46,363 Created temporary directory: /tmp/pip-unpack-8k8he9rp 2024-12-18T14:20:46,580 Downloading pyfus_lib-1.0.3.tar.gz (258 kB) 2024-12-18T14:20:47,117 Added pyfus-lib==1.0.3 from https://files.pythonhosted.org/packages/13/98/5f67650d15dbfd1adacc17fd28af717fb774895ee34160e4ffe741446b43/pyfus_lib-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-awr08ag0' 2024-12-18T14:20:47,119 Running setup.py (path:/tmp/pip-wheel-mb9xqiyv/pyfus-lib_21e2875e50274492b05fa576fc30a8db/setup.py) egg_info for package pyfus-lib 2024-12-18T14:20:47,120 Created temporary directory: /tmp/pip-pip-egg-info-xonr14jn 2024-12-18T14:20:47,121 Preparing metadata (setup.py): started 2024-12-18T14:20:47,122 Running command python setup.py egg_info 2024-12-18T14:20:47,648 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-18T14:20:47,649 warnings.warn(msg) 2024-12-18T14:20:48,180 running egg_info 2024-12-18T14:20:48,206 creating /tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info 2024-12-18T14:20:48,207 writing /tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/PKG-INFO 2024-12-18T14:20:48,211 writing dependency_links to /tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/dependency_links.txt 2024-12-18T14:20:48,213 writing requirements to /tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/requires.txt 2024-12-18T14:20:48,214 writing top-level names to /tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/top_level.txt 2024-12-18T14:20:48,216 writing manifest file '/tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/SOURCES.txt' 2024-12-18T14:20:48,301 reading manifest file '/tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/SOURCES.txt' 2024-12-18T14:20:48,303 reading manifest template 'MANIFEST.in' 2024-12-18T14:20:48,314 writing manifest file '/tmp/pip-pip-egg-info-xonr14jn/pyfus_lib.egg-info/SOURCES.txt' 2024-12-18T14:20:48,422 Preparing metadata (setup.py): finished with status 'done' 2024-12-18T14:20:48,427 Source in /tmp/pip-wheel-mb9xqiyv/pyfus-lib_21e2875e50274492b05fa576fc30a8db has version 1.0.3, which satisfies requirement pyfus-lib==1.0.3 from https://files.pythonhosted.org/packages/13/98/5f67650d15dbfd1adacc17fd28af717fb774895ee34160e4ffe741446b43/pyfus_lib-1.0.3.tar.gz 2024-12-18T14:20:48,428 Removed pyfus-lib==1.0.3 from https://files.pythonhosted.org/packages/13/98/5f67650d15dbfd1adacc17fd28af717fb774895ee34160e4ffe741446b43/pyfus_lib-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-awr08ag0' 2024-12-18T14:20:48,435 Created temporary directory: /tmp/pip-unpack-aybwruah 2024-12-18T14:20:48,436 Created temporary directory: /tmp/pip-unpack-b5c8fwv0 2024-12-18T14:20:48,437 Building wheels for collected packages: pyfus-lib 2024-12-18T14:20:48,441 Created temporary directory: /tmp/pip-wheel-dtkgd98e 2024-12-18T14:20:48,442 Building wheel for pyfus-lib (setup.py): started 2024-12-18T14:20:48,443 Destination directory: /tmp/pip-wheel-dtkgd98e 2024-12-18T14:20:48,443 Running command python setup.py bdist_wheel 2024-12-18T14:20:48,971 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2024-12-18T14:20:48,972 warnings.warn(msg) 2024-12-18T14:20:49,465 running bdist_wheel 2024-12-18T14:20:49,598 running build 2024-12-18T14:20:49,598 running build_py 2024-12-18T14:20:49,628 creating build/lib/pyfus 2024-12-18T14:20:49,630 copying pyfus/data_loading.py -> build/lib/pyfus 2024-12-18T14:20:49,634 copying pyfus/__init__.py -> build/lib/pyfus 2024-12-18T14:20:49,636 copying pyfus/registration.py -> build/lib/pyfus 2024-12-18T14:20:49,638 copying pyfus/clustering.py -> build/lib/pyfus 2024-12-18T14:20:49,641 copying pyfus/utils.py -> build/lib/pyfus 2024-12-18T14:20:49,644 copying pyfus/global_variables.py -> build/lib/pyfus 2024-12-18T14:20:49,646 copying pyfus/quantification.py -> build/lib/pyfus 2024-12-18T14:20:49,648 copying pyfus/quality_control.py -> build/lib/pyfus 2024-12-18T14:20:49,651 copying pyfus/features_extraction.py -> build/lib/pyfus 2024-12-18T14:20:49,652 copying pyfus/ccf_v3_atlas_generation.py -> build/lib/pyfus 2024-12-18T14:20:49,654 copying pyfus/autoencoders.py -> build/lib/pyfus 2024-12-18T14:20:49,657 copying pyfus/region_averaging_analysis.py -> build/lib/pyfus 2024-12-18T14:20:49,659 copying pyfus/correlation_analysis.py -> build/lib/pyfus 2024-12-18T14:20:49,661 running egg_info 2024-12-18T14:20:49,688 writing pyfus_lib.egg-info/PKG-INFO 2024-12-18T14:20:49,691 writing dependency_links to pyfus_lib.egg-info/dependency_links.txt 2024-12-18T14:20:49,693 writing requirements to pyfus_lib.egg-info/requires.txt 2024-12-18T14:20:49,694 writing top-level names to pyfus_lib.egg-info/top_level.txt 2024-12-18T14:20:49,728 reading manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-18T14:20:49,731 reading manifest template 'MANIFEST.in' 2024-12-18T14:20:49,740 writing manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-12-18T14:20:49,743 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases' is absent from the `packages` configuration. 2024-12-18T14:20:49,743 !! 2024-12-18T14:20:49,744 ******************************************************************************** 2024-12-18T14:20:49,745 ############################ 2024-12-18T14:20:49,746 # Package would be ignored # 2024-12-18T14:20:49,746 ############################ 2024-12-18T14:20:49,747 Python recognizes 'pyfus.atlases' as an importable package[^1], 2024-12-18T14:20:49,747 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,749 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,749 package, please make sure that 'pyfus.atlases' is explicitly added 2024-12-18T14:20:49,750 to the `packages` configuration field. 2024-12-18T14:20:49,751 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,752 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,753 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,753 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,755 If you don't want 'pyfus.atlases' to be distributed and are 2024-12-18T14:20:49,756 already explicitly excluding 'pyfus.atlases' via 2024-12-18T14:20:49,756 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,757 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:49,758 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:49,759 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:49,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:49,761 even if it does not contain any `.py` files. 2024-12-18T14:20:49,762 On the other hand, currently there is no concept of package data 2024-12-18T14:20:49,762 directory, all directories are treated like packages. 2024-12-18T14:20:49,763 ******************************************************************************** 2024-12-18T14:20:49,763 !! 2024-12-18T14:20:49,764 check.warn(importable) 2024-12-18T14:20:49,764 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.__pycache__' is absent from the `packages` configuration. 2024-12-18T14:20:49,765 !! 2024-12-18T14:20:49,766 ******************************************************************************** 2024-12-18T14:20:49,767 ############################ 2024-12-18T14:20:49,767 # Package would be ignored # 2024-12-18T14:20:49,768 ############################ 2024-12-18T14:20:49,768 Python recognizes 'pyfus.atlases.__pycache__' as an importable package[^1], 2024-12-18T14:20:49,769 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,770 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,770 package, please make sure that 'pyfus.atlases.__pycache__' is explicitly added 2024-12-18T14:20:49,771 to the `packages` configuration field. 2024-12-18T14:20:49,772 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,772 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,773 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,774 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,775 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,776 If you don't want 'pyfus.atlases.__pycache__' to be distributed and are 2024-12-18T14:20:49,777 already explicitly excluding 'pyfus.atlases.__pycache__' via 2024-12-18T14:20:49,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,778 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,778 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:49,780 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:49,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:49,782 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:49,783 even if it does not contain any `.py` files. 2024-12-18T14:20:49,784 On the other hand, currently there is no concept of package data 2024-12-18T14:20:49,784 directory, all directories are treated like packages. 2024-12-18T14:20:49,785 ******************************************************************************** 2024-12-18T14:20:49,786 !! 2024-12-18T14:20:49,786 check.warn(importable) 2024-12-18T14:20:49,787 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists' is absent from the `packages` configuration. 2024-12-18T14:20:49,787 !! 2024-12-18T14:20:49,788 ******************************************************************************** 2024-12-18T14:20:49,788 ############################ 2024-12-18T14:20:49,789 # Package would be ignored # 2024-12-18T14:20:49,789 ############################ 2024-12-18T14:20:49,790 Python recognizes 'pyfus.atlases.atlases_lists' as an importable package[^1], 2024-12-18T14:20:49,790 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,791 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,792 package, please make sure that 'pyfus.atlases.atlases_lists' is explicitly added 2024-12-18T14:20:49,792 to the `packages` configuration field. 2024-12-18T14:20:49,794 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,794 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,795 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,796 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,797 If you don't want 'pyfus.atlases.atlases_lists' to be distributed and are 2024-12-18T14:20:49,798 already explicitly excluding 'pyfus.atlases.atlases_lists' via 2024-12-18T14:20:49,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,799 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,799 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:49,801 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:49,802 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:49,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:49,804 even if it does not contain any `.py` files. 2024-12-18T14:20:49,805 On the other hand, currently there is no concept of package data 2024-12-18T14:20:49,805 directory, all directories are treated like packages. 2024-12-18T14:20:49,806 ******************************************************************************** 2024-12-18T14:20:49,807 !! 2024-12-18T14:20:49,808 check.warn(importable) 2024-12-18T14:20:49,808 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_lists.__pycache__' is absent from the `packages` configuration. 2024-12-18T14:20:49,809 !! 2024-12-18T14:20:49,811 ******************************************************************************** 2024-12-18T14:20:49,812 ############################ 2024-12-18T14:20:49,812 # Package would be ignored # 2024-12-18T14:20:49,813 ############################ 2024-12-18T14:20:49,814 Python recognizes 'pyfus.atlases.atlases_lists.__pycache__' as an importable package[^1], 2024-12-18T14:20:49,814 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,816 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,816 package, please make sure that 'pyfus.atlases.atlases_lists.__pycache__' is explicitly added 2024-12-18T14:20:49,817 to the `packages` configuration field. 2024-12-18T14:20:49,818 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,818 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,819 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,821 If you don't want 'pyfus.atlases.atlases_lists.__pycache__' to be distributed and are 2024-12-18T14:20:49,822 already explicitly excluding 'pyfus.atlases.atlases_lists.__pycache__' via 2024-12-18T14:20:49,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,827 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:49,828 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:49,829 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:49,831 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:49,831 even if it does not contain any `.py` files. 2024-12-18T14:20:49,832 On the other hand, currently there is no concept of package data 2024-12-18T14:20:49,832 directory, all directories are treated like packages. 2024-12-18T14:20:49,833 ******************************************************************************** 2024-12-18T14:20:49,834 !! 2024-12-18T14:20:49,835 check.warn(importable) 2024-12-18T14:20:49,836 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy' is absent from the `packages` configuration. 2024-12-18T14:20:49,836 !! 2024-12-18T14:20:49,838 ******************************************************************************** 2024-12-18T14:20:49,838 ############################ 2024-12-18T14:20:49,839 # Package would be ignored # 2024-12-18T14:20:49,839 ############################ 2024-12-18T14:20:49,840 Python recognizes 'pyfus.atlases.atlases_npy' as an importable package[^1], 2024-12-18T14:20:49,840 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,852 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,854 package, please make sure that 'pyfus.atlases.atlases_npy' is explicitly added 2024-12-18T14:20:49,869 to the `packages` configuration field. 2024-12-18T14:20:49,925 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,928 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,929 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,931 If you don't want 'pyfus.atlases.atlases_npy' to be distributed and are 2024-12-18T14:20:49,931 already explicitly excluding 'pyfus.atlases.atlases_npy' via 2024-12-18T14:20:49,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,933 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:49,935 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:49,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:49,937 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:49,938 even if it does not contain any `.py` files. 2024-12-18T14:20:49,938 On the other hand, currently there is no concept of package data 2024-12-18T14:20:49,939 directory, all directories are treated like packages. 2024-12-18T14:20:49,939 ******************************************************************************** 2024-12-18T14:20:49,940 !! 2024-12-18T14:20:49,941 check.warn(importable) 2024-12-18T14:20:49,941 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pyfus.atlases.atlases_npy.__pycache__' is absent from the `packages` configuration. 2024-12-18T14:20:49,942 !! 2024-12-18T14:20:49,943 ******************************************************************************** 2024-12-18T14:20:49,943 ############################ 2024-12-18T14:20:49,943 # Package would be ignored # 2024-12-18T14:20:49,944 ############################ 2024-12-18T14:20:49,944 Python recognizes 'pyfus.atlases.atlases_npy.__pycache__' as an importable package[^1], 2024-12-18T14:20:49,946 but it is absent from setuptools' `packages` configuration. 2024-12-18T14:20:49,947 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T14:20:49,948 package, please make sure that 'pyfus.atlases.atlases_npy.__pycache__' is explicitly added 2024-12-18T14:20:49,948 to the `packages` configuration field. 2024-12-18T14:20:49,950 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T14:20:49,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T14:20:49,951 instead of `find_packages(...)`/`find:`). 2024-12-18T14:20:49,952 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T14:20:49,954 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T14:20:49,955 If you don't want 'pyfus.atlases.atlases_npy.__pycache__' to be distributed and are 2024-12-18T14:20:49,957 already explicitly excluding 'pyfus.atlases.atlases_npy.__pycache__' via 2024-12-18T14:20:49,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T14:20:49,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T14:20:49,977 combination with a more fine grained `package-data` configuration. 2024-12-18T14:20:50,003 You can read more about "package data files" on setuptools documentation page: 2024-12-18T14:20:50,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T14:20:50,008 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T14:20:50,009 even if it does not contain any `.py` files. 2024-12-18T14:20:50,009 On the other hand, currently there is no concept of package data 2024-12-18T14:20:50,010 directory, all directories are treated like packages. 2024-12-18T14:20:50,010 ******************************************************************************** 2024-12-18T14:20:50,011 !! 2024-12-18T14:20:50,013 check.warn(importable) 2024-12-18T14:20:50,013 creating build/lib/pyfus/atlases 2024-12-18T14:20:50,014 copying pyfus/atlases/__init__.py -> build/lib/pyfus/atlases 2024-12-18T14:20:50,015 creating build/lib/pyfus/atlases/__pycache__ 2024-12-18T14:20:50,015 copying pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/__pycache__ 2024-12-18T14:20:50,016 creating build/lib/pyfus/atlases/atlases_lists 2024-12-18T14:20:50,017 copying pyfus/atlases/atlases_lists/__init__.py -> build/lib/pyfus/atlases/atlases_lists 2024-12-18T14:20:50,017 copying pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/lib/pyfus/atlases/atlases_lists 2024-12-18T14:20:50,018 creating build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-18T14:20:50,018 copying pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-12-18T14:20:50,018 creating build/lib/pyfus/atlases/atlases_npy 2024-12-18T14:20:50,019 copying pyfus/atlases/atlases_npy/__init__.py -> build/lib/pyfus/atlases/atlases_npy 2024-12-18T14:20:50,019 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-18T14:20:50,021 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/lib/pyfus/atlases/atlases_npy 2024-12-18T14:20:50,021 creating build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-18T14:20:50,022 copying pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-12-18T14:20:50,046 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-18T14:20:50,046 !! 2024-12-18T14:20:50,047 ******************************************************************************** 2024-12-18T14:20:50,048 Please avoid running ``setup.py`` directly. 2024-12-18T14:20:50,048 Instead, use pypa/build, pypa/installer or other 2024-12-18T14:20:50,049 standards-based tools. 2024-12-18T14:20:50,050 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-18T14:20:50,051 ******************************************************************************** 2024-12-18T14:20:50,052 !! 2024-12-18T14:20:50,052 self.initialize_options() 2024-12-18T14:20:50,077 installing to build/bdist.linux-armv7l/wheel 2024-12-18T14:20:50,078 running install 2024-12-18T14:20:50,104 running install_lib 2024-12-18T14:20:50,133 creating build/bdist.linux-armv7l/wheel 2024-12-18T14:20:50,135 creating build/bdist.linux-armv7l/wheel/pyfus 2024-12-18T14:20:50,137 copying build/lib/pyfus/data_loading.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,140 copying build/lib/pyfus/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,142 copying build/lib/pyfus/registration.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,145 copying build/lib/pyfus/clustering.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,148 copying build/lib/pyfus/utils.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,151 copying build/lib/pyfus/global_variables.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,153 copying build/lib/pyfus/quantification.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,157 copying build/lib/pyfus/quality_control.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,159 copying build/lib/pyfus/features_extraction.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,161 copying build/lib/pyfus/ccf_v3_atlas_generation.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,164 copying build/lib/pyfus/autoencoders.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,167 creating build/bdist.linux-armv7l/wheel/pyfus/atlases 2024-12-18T14:20:50,169 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists 2024-12-18T14:20:50,171 copying build/lib/pyfus/atlases/atlases_lists/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-18T14:20:50,173 copying build/lib/pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-12-18T14:20:50,177 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists/__pycache__ 2024-12-18T14:20:50,179 copying build/lib/pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists/__pycache__ 2024-12-18T14:20:50,181 copying build/lib/pyfus/atlases/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases 2024-12-18T14:20:50,184 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy 2024-12-18T14:20:50,185 copying build/lib/pyfus/atlases/atlases_npy/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-18T14:20:50,187 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-18T14:20:50,266 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy/__pycache__ 2024-12-18T14:20:50,267 copying build/lib/pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy/__pycache__ 2024-12-18T14:20:50,270 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-12-18T14:20:50,431 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/__pycache__ 2024-12-18T14:20:50,432 copying build/lib/pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/__pycache__ 2024-12-18T14:20:50,434 copying build/lib/pyfus/region_averaging_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,437 copying build/lib/pyfus/correlation_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-12-18T14:20:50,439 running install_egg_info 2024-12-18T14:20:50,473 Copying pyfus_lib.egg-info to build/bdist.linux-armv7l/wheel/./pyfus_lib-1.0.3-py3.11.egg-info 2024-12-18T14:20:50,483 running install_scripts 2024-12-18T14:20:50,499 creating build/bdist.linux-armv7l/wheel/pyfus_lib-1.0.3.dist-info/WHEEL 2024-12-18T14:20:50,501 creating '/tmp/pip-wheel-dtkgd98e/pyfus_lib-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-18T14:20:50,504 adding 'pyfus/__init__.py' 2024-12-18T14:20:50,506 adding 'pyfus/autoencoders.py' 2024-12-18T14:20:50,508 adding 'pyfus/ccf_v3_atlas_generation.py' 2024-12-18T14:20:50,513 adding 'pyfus/clustering.py' 2024-12-18T14:20:50,515 adding 'pyfus/correlation_analysis.py' 2024-12-18T14:20:50,519 adding 'pyfus/data_loading.py' 2024-12-18T14:20:50,521 adding 'pyfus/features_extraction.py' 2024-12-18T14:20:50,523 adding 'pyfus/global_variables.py' 2024-12-18T14:20:50,525 adding 'pyfus/quality_control.py' 2024-12-18T14:20:50,529 adding 'pyfus/quantification.py' 2024-12-18T14:20:50,531 adding 'pyfus/region_averaging_analysis.py' 2024-12-18T14:20:50,533 adding 'pyfus/registration.py' 2024-12-18T14:20:50,536 adding 'pyfus/utils.py' 2024-12-18T14:20:50,538 adding 'pyfus/atlases/__init__.py' 2024-12-18T14:20:50,539 adding 'pyfus/atlases/__pycache__/__init__.cpython-39.pyc' 2024-12-18T14:20:50,541 adding 'pyfus/atlases/atlases_lists/__init__.py' 2024-12-18T14:20:50,543 adding 'pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt' 2024-12-18T14:20:50,544 adding 'pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc' 2024-12-18T14:20:50,546 adding 'pyfus/atlases/atlases_npy/__init__.py' 2024-12-18T14:20:50,753 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy' 2024-12-18T14:20:50,989 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy' 2024-12-18T14:20:51,020 adding 'pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc' 2024-12-18T14:20:51,022 adding 'pyfus_lib-1.0.3.dist-info/METADATA' 2024-12-18T14:20:51,023 adding 'pyfus_lib-1.0.3.dist-info/WHEEL' 2024-12-18T14:20:51,024 adding 'pyfus_lib-1.0.3.dist-info/top_level.txt' 2024-12-18T14:20:51,025 adding 'pyfus_lib-1.0.3.dist-info/RECORD' 2024-12-18T14:20:51,029 removing build/bdist.linux-armv7l/wheel 2024-12-18T14:20:51,154 Building wheel for pyfus-lib (setup.py): finished with status 'done' 2024-12-18T14:20:51,159 Created wheel for pyfus-lib: filename=pyfus_lib-1.0.3-py3-none-any.whl size=281343 sha256=7ce4424493ea626c0c7cc9c9bba5272f7b46996dd0f68207b4cd162edf777191 2024-12-18T14:20:51,160 Stored in directory: /tmp/pip-ephem-wheel-cache-tmjgnjka/wheels/86/1f/82/3c815271159ea1e3e9a92a3a20ac85cb13ce79925f2d6e0d96 2024-12-18T14:20:51,169 Successfully built pyfus-lib 2024-12-18T14:20:51,181 Removed build tracker: '/tmp/pip-build-tracker-awr08ag0'