2024-12-18T15:24:37,544 Created temporary directory: /tmp/pip-build-tracker-cjeat2q3 2024-12-18T15:24:37,545 Initialized build tracking at /tmp/pip-build-tracker-cjeat2q3 2024-12-18T15:24:37,546 Created build tracker: /tmp/pip-build-tracker-cjeat2q3 2024-12-18T15:24:37,546 Entered build tracker: /tmp/pip-build-tracker-cjeat2q3 2024-12-18T15:24:37,547 Created temporary directory: /tmp/pip-wheel-kso0e838 2024-12-18T15:24:37,551 Created temporary directory: /tmp/pip-ephem-wheel-cache-nhwnm2w9 2024-12-18T15:24:37,598 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-18T15:24:37,601 2 location(s) to search for versions of agentp: 2024-12-18T15:24:37,601 * https://pypi.org/simple/agentp/ 2024-12-18T15:24:37,601 * https://www.piwheels.org/simple/agentp/ 2024-12-18T15:24:37,601 Fetching project page and analyzing links: https://pypi.org/simple/agentp/ 2024-12-18T15:24:37,602 Getting page https://pypi.org/simple/agentp/ 2024-12-18T15:24:37,603 Found index url https://pypi.org/simple/ 2024-12-18T15:24:37,832 Fetched page https://pypi.org/simple/agentp/ as application/vnd.pypi.simple.v1+json 2024-12-18T15:24:37,837 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/63/c7/c420da77ffbf6f1685bfb920c36fe5c23bc1a21be69562359eb282a692af/agentp-0.0.0-py3-none-any.whl (from https://pypi.org/simple/agentp/) 2024-12-18T15:24:37,838 Found link https://files.pythonhosted.org/packages/ef/c3/39d7d9399603a27f1f5a449ffc8e73dc96cec6d27485c0498373edb5e7a2/agentp-0.0.0.tar.gz (from https://pypi.org/simple/agentp/), version: 0.0.0 2024-12-18T15:24:37,839 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/04/f5/a29949dd291199d9954033594de435b9b756cfc293a3fd180dbb3b5afb09/agentp-0.0.1-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,839 Found link https://files.pythonhosted.org/packages/2f/15/7564b8993f3f9f0395fe44f3740d2a0adab96652b08053968bc4ecdf4163/agentp-0.0.1.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.1 2024-12-18T15:24:37,840 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/88/df/e3671c4e9626f3619cd4b7a1a1f097b962a09ef77ba14b6c4bf19f09ad22/agentp-0.0.2-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,841 Found link https://files.pythonhosted.org/packages/e9/5d/cfe347c27bf280017f6b492de48360bdc3fe693ef9a0eb642c4eb7ceac03/agentp-0.0.2.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.2 2024-12-18T15:24:37,842 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/73/52/baae15f5c6826aeda64eb040df49627f1c11d6a2d4a00663d2aff00b014a/agentp-0.0.3-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,843 Found link https://files.pythonhosted.org/packages/a7/47/fe7e1d9f5fb2894bb4f7ef714430b32d177d76fca17e5bd3c04b9b7e1d4d/agentp-0.0.3.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.3 2024-12-18T15:24:37,844 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/fc/85/3e611c42a62f6bcd133550a49e59e9bdbdb608eba1558e4d4ccf14512ff8/agentp-0.0.4-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,845 Found link https://files.pythonhosted.org/packages/78/04/04e3903ddf04ef65172b4ab2c2a391b809aa4ac046ce0ecdc12f64743b44/agentp-0.0.4.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.4 2024-12-18T15:24:37,845 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/e4/15/e44c21259e582061962f51010d056152cba0b12bf9bfd44d265da2927af8/agentp-0.0.5-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,846 Found link https://files.pythonhosted.org/packages/51/22/e2730c33f5471d435a3432e15ebd355021ae46db00b384ea4cfcc304198f/agentp-0.0.5.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.5 2024-12-18T15:24:37,847 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/a8/e9/268c101ac47bf0677d4dd2e8572dd3be00a938d2f7ddf5a805b45c49acbf/agentp-0.0.6-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,848 Found link https://files.pythonhosted.org/packages/94/40/d62592db1f3b3f68c6a67fb7fbd9dd668901996bd83965560021bfef2d99/agentp-0.0.6.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.6 2024-12-18T15:24:37,848 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/b2/f0/305f59cb96c7acf284f5aa7a7a1187858de2f03356ab48e6e0fa454da3ef/agentp-0.0.7-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,849 Found link https://files.pythonhosted.org/packages/6d/6a/e3dbd141c7888f8667ac6060519ae309dead67f96ea62d95199a99119f8f/agentp-0.0.7.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.7 2024-12-18T15:24:37,850 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/79/6d/c18f58de0fe51bae2eb3c99648c647f59d8d7048ac2d6553b71ce2fca908/agentp-0.0.8-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,850 Found link https://files.pythonhosted.org/packages/7a/bb/90f033952a1891bd21af9d2d5871cec2e3a51636c986aa8b901ca22f6ce2/agentp-0.0.8.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.8 2024-12-18T15:24:37,851 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/30/0e/d7ae804089a3b548fdbd5d5081fbb5d564c9f6a0da57784af7d0f759a7e6/agentp-0.0.9-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,852 Found link https://files.pythonhosted.org/packages/b3/4a/0ba331d60f5ef03ca3c9776b407105d728396ab6ba9e02bf7d1f53e5ac08/agentp-0.0.9.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.0.9 2024-12-18T15:24:37,853 Skipping link: No binaries permitted for agentp: https://files.pythonhosted.org/packages/64/44/657f1edb7f9e3be9cc48a72bb620f1f0e18a046f331087472b380968ebad/agentp-0.1.0-py3-none-any.whl (from https://pypi.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:37,854 Found link https://files.pythonhosted.org/packages/8a/f8/8b87d5bca86b0f4a4f283b983ab2abbabd5f799728710ea08e0a3c9e5a7e/agentp-0.1.0.tar.gz (from https://pypi.org/simple/agentp/) (requires-python:>=3.8), version: 0.1.0 2024-12-18T15:24:37,855 Fetching project page and analyzing links: https://www.piwheels.org/simple/agentp/ 2024-12-18T15:24:37,855 Getting page https://www.piwheels.org/simple/agentp/ 2024-12-18T15:24:37,857 Found index url https://www.piwheels.org/simple/ 2024-12-18T15:24:38,022 Fetched page https://www.piwheels.org/simple/agentp/ as text/html 2024-12-18T15:24:38,026 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.9-py3-none-any.whl#sha256=21a605577ffcb6b118d257069179f4f7ed8ff1f36e58fcc954efd1414df11af6 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,026 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.8-py3-none-any.whl#sha256=57a55133a30763621d200e78cbf94a1a9d84d87a0f50d5041f81ce3d703c503f (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,027 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.7-py3-none-any.whl#sha256=8e281cbe7a00856890b941fdb3cd52daebeaf73199ba78cde97782366c1ad7e8 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,027 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.6-py3-none-any.whl#sha256=2e395861f2e696f2320441b009c2b59f7f9dd56abcba53f829dc8adfb25fa738 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,028 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.5-py3-none-any.whl#sha256=d4ffc9a1669e0e482becc89f84997571a0519320d619b53e6374a4355b6d4486 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,029 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.4-py3-none-any.whl#sha256=d6254a39e689f872b10ced4daa75dbbb2325847199ba3d2620974375a64b79db (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,029 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.3-py3-none-any.whl#sha256=b34af4d99ce4b30f338cce8de9f1320bb9a7f94c8c6c69f829e416f72826cb32 (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,030 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.2-py3-none-any.whl#sha256=545867d7a817cae521cbcd185ff85b3c7c75894ffd0168362547c8e92d3c257b (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,030 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.1-py3-none-any.whl#sha256=1dd0042825fe12a927a71dcfa5513862427dcd96e304ca82a21b17d51b34ea8f (from https://www.piwheels.org/simple/agentp/) (requires-python:>=3.8) 2024-12-18T15:24:38,031 Skipping link: No binaries permitted for agentp: https://www.piwheels.org/simple/agentp/agentp-0.0.0-py3-none-any.whl#sha256=d8a9c41725f1c435b0e2faa6b7688de8973d4049ee5fe99e6e285c4b423f6c11 (from https://www.piwheels.org/simple/agentp/) 2024-12-18T15:24:38,031 Skipping link: not a file: https://www.piwheels.org/simple/agentp/ 2024-12-18T15:24:38,032 Skipping link: not a file: https://pypi.org/simple/agentp/ 2024-12-18T15:24:38,052 Given no hashes to check 1 links for project 'agentp': discarding no candidates 2024-12-18T15:24:38,054 Collecting agentp==0.1.0 2024-12-18T15:24:38,056 Created temporary directory: /tmp/pip-unpack-0mlht931 2024-12-18T15:24:38,298 Downloading agentp-0.1.0.tar.gz (6.5 MB) 2024-12-18T15:24:40,095 Added agentp==0.1.0 from https://files.pythonhosted.org/packages/8a/f8/8b87d5bca86b0f4a4f283b983ab2abbabd5f799728710ea08e0a3c9e5a7e/agentp-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-cjeat2q3' 2024-12-18T15:24:40,097 Running setup.py (path:/tmp/pip-wheel-kso0e838/agentp_c5f4b7e21f7c4aadb5ec6977dea06c81/setup.py) egg_info for package agentp 2024-12-18T15:24:40,098 Created temporary directory: /tmp/pip-pip-egg-info-1q5ra1ma 2024-12-18T15:24:40,099 Preparing metadata (setup.py): started 2024-12-18T15:24:40,100 Running command python setup.py egg_info 2024-12-18T15:24:41,232 running egg_info 2024-12-18T15:24:41,260 creating /tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info 2024-12-18T15:24:41,262 writing /tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/PKG-INFO 2024-12-18T15:24:41,265 writing dependency_links to /tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/dependency_links.txt 2024-12-18T15:24:41,267 writing requirements to /tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/requires.txt 2024-12-18T15:24:41,268 writing top-level names to /tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/top_level.txt 2024-12-18T15:24:41,270 writing manifest file '/tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/SOURCES.txt' 2024-12-18T15:24:41,359 reading manifest file '/tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/SOURCES.txt' 2024-12-18T15:24:41,360 reading manifest template 'MANIFEST.in' 2024-12-18T15:24:41,411 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-12-18T15:24:41,412 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-12-18T15:24:41,417 writing manifest file '/tmp/pip-pip-egg-info-1q5ra1ma/agentp.egg-info/SOURCES.txt' 2024-12-18T15:24:41,526 Preparing metadata (setup.py): finished with status 'done' 2024-12-18T15:24:41,530 Source in /tmp/pip-wheel-kso0e838/agentp_c5f4b7e21f7c4aadb5ec6977dea06c81 has version 0.1.0, which satisfies requirement agentp==0.1.0 from https://files.pythonhosted.org/packages/8a/f8/8b87d5bca86b0f4a4f283b983ab2abbabd5f799728710ea08e0a3c9e5a7e/agentp-0.1.0.tar.gz 2024-12-18T15:24:41,531 Removed agentp==0.1.0 from https://files.pythonhosted.org/packages/8a/f8/8b87d5bca86b0f4a4f283b983ab2abbabd5f799728710ea08e0a3c9e5a7e/agentp-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-cjeat2q3' 2024-12-18T15:24:41,537 Created temporary directory: /tmp/pip-unpack-95w37rfy 2024-12-18T15:24:41,538 Created temporary directory: /tmp/pip-unpack-5oytmhyc 2024-12-18T15:24:41,539 Building wheels for collected packages: agentp 2024-12-18T15:24:41,543 Created temporary directory: /tmp/pip-wheel-08f3uw6b 2024-12-18T15:24:41,543 Building wheel for agentp (setup.py): started 2024-12-18T15:24:41,545 Destination directory: /tmp/pip-wheel-08f3uw6b 2024-12-18T15:24:41,545 Running command python setup.py bdist_wheel 2024-12-18T15:24:42,614 running bdist_wheel 2024-12-18T15:24:42,970 running build 2024-12-18T15:24:42,971 running build_py 2024-12-18T15:24:43,001 creating build/lib/agentp 2024-12-18T15:24:43,004 copying agentp/Project.py -> build/lib/agentp 2024-12-18T15:24:43,008 copying agentp/TWAS.py -> build/lib/agentp 2024-12-18T15:24:43,010 copying agentp/__init__.py -> build/lib/agentp 2024-12-18T15:24:43,013 copying agentp/GWAS.py -> build/lib/agentp 2024-12-18T15:24:43,016 copying agentp/Genotypes.py -> build/lib/agentp 2024-12-18T15:24:43,019 copying agentp/GREX.py -> build/lib/agentp 2024-12-18T15:24:43,022 copying agentp/Static.py -> build/lib/agentp 2024-12-18T15:24:43,024 running egg_info 2024-12-18T15:24:43,055 writing agentp.egg-info/PKG-INFO 2024-12-18T15:24:43,058 writing dependency_links to agentp.egg-info/dependency_links.txt 2024-12-18T15:24:43,059 writing requirements to agentp.egg-info/requires.txt 2024-12-18T15:24:43,060 writing top-level names to agentp.egg-info/top_level.txt 2024-12-18T15:24:43,092 reading manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-18T15:24:43,099 reading manifest template 'MANIFEST.in' 2024-12-18T15:24:43,149 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-12-18T15:24:43,150 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-12-18T15:24:43,156 writing manifest file 'agentp.egg-info/SOURCES.txt' 2024-12-18T15:24:43,159 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan' is absent from the `packages` configuration. 2024-12-18T15:24:43,160 !! 2024-12-18T15:24:43,161 ******************************************************************************** 2024-12-18T15:24:43,162 ############################ 2024-12-18T15:24:43,162 # Package would be ignored # 2024-12-18T15:24:43,163 ############################ 2024-12-18T15:24:43,163 Python recognizes 'agentp.external.MetaXcan' as an importable package[^1], 2024-12-18T15:24:43,164 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,165 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,166 package, please make sure that 'agentp.external.MetaXcan' is explicitly added 2024-12-18T15:24:43,166 to the `packages` configuration field. 2024-12-18T15:24:43,167 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,169 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,170 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,172 If you don't want 'agentp.external.MetaXcan' to be distributed and are 2024-12-18T15:24:43,173 already explicitly excluding 'agentp.external.MetaXcan' via 2024-12-18T15:24:43,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,174 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,175 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,177 even if it does not contain any `.py` files. 2024-12-18T15:24:43,177 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,178 directory, all directories are treated like packages. 2024-12-18T15:24:43,178 ******************************************************************************** 2024-12-18T15:24:43,179 !! 2024-12-18T15:24:43,179 check.warn(importable) 2024-12-18T15:24:43,179 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax' is absent from the `packages` configuration. 2024-12-18T15:24:43,180 !! 2024-12-18T15:24:43,181 ******************************************************************************** 2024-12-18T15:24:43,181 ############################ 2024-12-18T15:24:43,182 # Package would be ignored # 2024-12-18T15:24:43,183 ############################ 2024-12-18T15:24:43,183 Python recognizes 'agentp.external.MetaXcan.metax' as an importable package[^1], 2024-12-18T15:24:43,184 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,185 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,185 package, please make sure that 'agentp.external.MetaXcan.metax' is explicitly added 2024-12-18T15:24:43,186 to the `packages` configuration field. 2024-12-18T15:24:43,187 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,189 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,191 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,193 If you don't want 'agentp.external.MetaXcan.metax' to be distributed and are 2024-12-18T15:24:43,194 already explicitly excluding 'agentp.external.MetaXcan.metax' via 2024-12-18T15:24:43,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,195 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,196 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,198 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,202 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,203 even if it does not contain any `.py` files. 2024-12-18T15:24:43,205 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,205 directory, all directories are treated like packages. 2024-12-18T15:24:43,206 ******************************************************************************** 2024-12-18T15:24:43,207 !! 2024-12-18T15:24:43,208 check.warn(importable) 2024-12-18T15:24:43,209 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.expression' is absent from the `packages` configuration. 2024-12-18T15:24:43,209 !! 2024-12-18T15:24:43,210 ******************************************************************************** 2024-12-18T15:24:43,211 ############################ 2024-12-18T15:24:43,211 # Package would be ignored # 2024-12-18T15:24:43,212 ############################ 2024-12-18T15:24:43,212 Python recognizes 'agentp.external.MetaXcan.metax.expression' as an importable package[^1], 2024-12-18T15:24:43,213 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,214 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,214 package, please make sure that 'agentp.external.MetaXcan.metax.expression' is explicitly added 2024-12-18T15:24:43,215 to the `packages` configuration field. 2024-12-18T15:24:43,216 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,217 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,218 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,221 If you don't want 'agentp.external.MetaXcan.metax.expression' to be distributed and are 2024-12-18T15:24:43,221 already explicitly excluding 'agentp.external.MetaXcan.metax.expression' via 2024-12-18T15:24:43,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,222 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,224 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,226 even if it does not contain any `.py` files. 2024-12-18T15:24:43,227 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,227 directory, all directories are treated like packages. 2024-12-18T15:24:43,228 ******************************************************************************** 2024-12-18T15:24:43,229 !! 2024-12-18T15:24:43,230 check.warn(importable) 2024-12-18T15:24:43,230 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.genotype' is absent from the `packages` configuration. 2024-12-18T15:24:43,231 !! 2024-12-18T15:24:43,232 ******************************************************************************** 2024-12-18T15:24:43,232 ############################ 2024-12-18T15:24:43,233 # Package would be ignored # 2024-12-18T15:24:43,234 ############################ 2024-12-18T15:24:43,234 Python recognizes 'agentp.external.MetaXcan.metax.genotype' as an importable package[^1], 2024-12-18T15:24:43,235 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,236 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,236 package, please make sure that 'agentp.external.MetaXcan.metax.genotype' is explicitly added 2024-12-18T15:24:43,237 to the `packages` configuration field. 2024-12-18T15:24:43,238 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,239 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,240 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,241 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,242 If you don't want 'agentp.external.MetaXcan.metax.genotype' to be distributed and are 2024-12-18T15:24:43,243 already explicitly excluding 'agentp.external.MetaXcan.metax.genotype' via 2024-12-18T15:24:43,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,244 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,244 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,245 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,246 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,248 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,248 even if it does not contain any `.py` files. 2024-12-18T15:24:43,249 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,249 directory, all directories are treated like packages. 2024-12-18T15:24:43,250 ******************************************************************************** 2024-12-18T15:24:43,251 !! 2024-12-18T15:24:43,251 check.warn(importable) 2024-12-18T15:24:43,252 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.gwas' is absent from the `packages` configuration. 2024-12-18T15:24:43,253 !! 2024-12-18T15:24:43,254 ******************************************************************************** 2024-12-18T15:24:43,254 ############################ 2024-12-18T15:24:43,255 # Package would be ignored # 2024-12-18T15:24:43,256 ############################ 2024-12-18T15:24:43,256 Python recognizes 'agentp.external.MetaXcan.metax.gwas' as an importable package[^1], 2024-12-18T15:24:43,257 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,258 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,258 package, please make sure that 'agentp.external.MetaXcan.metax.gwas' is explicitly added 2024-12-18T15:24:43,259 to the `packages` configuration field. 2024-12-18T15:24:43,260 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,261 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,262 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,265 If you don't want 'agentp.external.MetaXcan.metax.gwas' to be distributed and are 2024-12-18T15:24:43,265 already explicitly excluding 'agentp.external.MetaXcan.metax.gwas' via 2024-12-18T15:24:43,266 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,267 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,268 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,271 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,271 even if it does not contain any `.py` files. 2024-12-18T15:24:43,272 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,273 directory, all directories are treated like packages. 2024-12-18T15:24:43,273 ******************************************************************************** 2024-12-18T15:24:43,274 !! 2024-12-18T15:24:43,275 check.warn(importable) 2024-12-18T15:24:43,275 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.metaxcan' is absent from the `packages` configuration. 2024-12-18T15:24:43,276 !! 2024-12-18T15:24:43,277 ******************************************************************************** 2024-12-18T15:24:43,278 ############################ 2024-12-18T15:24:43,278 # Package would be ignored # 2024-12-18T15:24:43,279 ############################ 2024-12-18T15:24:43,279 Python recognizes 'agentp.external.MetaXcan.metax.metaxcan' as an importable package[^1], 2024-12-18T15:24:43,280 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,281 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,282 package, please make sure that 'agentp.external.MetaXcan.metax.metaxcan' is explicitly added 2024-12-18T15:24:43,282 to the `packages` configuration field. 2024-12-18T15:24:43,283 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,284 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,285 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,286 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,288 If you don't want 'agentp.external.MetaXcan.metax.metaxcan' to be distributed and are 2024-12-18T15:24:43,288 already explicitly excluding 'agentp.external.MetaXcan.metax.metaxcan' via 2024-12-18T15:24:43,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,289 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,290 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,291 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,292 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,294 even if it does not contain any `.py` files. 2024-12-18T15:24:43,294 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,295 directory, all directories are treated like packages. 2024-12-18T15:24:43,295 ******************************************************************************** 2024-12-18T15:24:43,297 !! 2024-12-18T15:24:43,297 check.warn(importable) 2024-12-18T15:24:43,298 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.misc' is absent from the `packages` configuration. 2024-12-18T15:24:43,298 !! 2024-12-18T15:24:43,299 ******************************************************************************** 2024-12-18T15:24:43,300 ############################ 2024-12-18T15:24:43,301 # Package would be ignored # 2024-12-18T15:24:43,301 ############################ 2024-12-18T15:24:43,302 Python recognizes 'agentp.external.MetaXcan.metax.misc' as an importable package[^1], 2024-12-18T15:24:43,303 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,304 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,304 package, please make sure that 'agentp.external.MetaXcan.metax.misc' is explicitly added 2024-12-18T15:24:43,305 to the `packages` configuration field. 2024-12-18T15:24:43,306 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,306 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,307 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,308 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,309 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,309 If you don't want 'agentp.external.MetaXcan.metax.misc' to be distributed and are 2024-12-18T15:24:43,310 already explicitly excluding 'agentp.external.MetaXcan.metax.misc' via 2024-12-18T15:24:43,310 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,311 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,312 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,313 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,314 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,315 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,316 even if it does not contain any `.py` files. 2024-12-18T15:24:43,316 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,317 directory, all directories are treated like packages. 2024-12-18T15:24:43,317 ******************************************************************************** 2024-12-18T15:24:43,318 !! 2024-12-18T15:24:43,319 check.warn(importable) 2024-12-18T15:24:43,319 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.MetaXcan.metax.predixcan' is absent from the `packages` configuration. 2024-12-18T15:24:43,320 !! 2024-12-18T15:24:43,321 ******************************************************************************** 2024-12-18T15:24:43,322 ############################ 2024-12-18T15:24:43,322 # Package would be ignored # 2024-12-18T15:24:43,323 ############################ 2024-12-18T15:24:43,324 Python recognizes 'agentp.external.MetaXcan.metax.predixcan' as an importable package[^1], 2024-12-18T15:24:43,324 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,325 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,326 package, please make sure that 'agentp.external.MetaXcan.metax.predixcan' is explicitly added 2024-12-18T15:24:43,326 to the `packages` configuration field. 2024-12-18T15:24:43,327 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,329 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,330 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,333 If you don't want 'agentp.external.MetaXcan.metax.predixcan' to be distributed and are 2024-12-18T15:24:43,334 already explicitly excluding 'agentp.external.MetaXcan.metax.predixcan' via 2024-12-18T15:24:43,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,335 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,336 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,337 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,338 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,339 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,339 even if it does not contain any `.py` files. 2024-12-18T15:24:43,340 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,341 directory, all directories are treated like packages. 2024-12-18T15:24:43,341 ******************************************************************************** 2024-12-18T15:24:43,342 !! 2024-12-18T15:24:43,343 check.warn(importable) 2024-12-18T15:24:43,343 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.fusion_twas' is absent from the `packages` configuration. 2024-12-18T15:24:43,344 !! 2024-12-18T15:24:43,345 ******************************************************************************** 2024-12-18T15:24:43,345 ############################ 2024-12-18T15:24:43,346 # Package would be ignored # 2024-12-18T15:24:43,346 ############################ 2024-12-18T15:24:43,347 Python recognizes 'agentp.external.fusion_twas' as an importable package[^1], 2024-12-18T15:24:43,348 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,349 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,350 package, please make sure that 'agentp.external.fusion_twas' is explicitly added 2024-12-18T15:24:43,351 to the `packages` configuration field. 2024-12-18T15:24:43,352 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,353 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,354 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,355 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,357 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,358 If you don't want 'agentp.external.fusion_twas' to be distributed and are 2024-12-18T15:24:43,359 already explicitly excluding 'agentp.external.fusion_twas' via 2024-12-18T15:24:43,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,361 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,362 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,366 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,367 even if it does not contain any `.py` files. 2024-12-18T15:24:43,368 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,368 directory, all directories are treated like packages. 2024-12-18T15:24:43,369 ******************************************************************************** 2024-12-18T15:24:43,371 !! 2024-12-18T15:24:43,371 check.warn(importable) 2024-12-18T15:24:43,372 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.fusion_twas.utils' is absent from the `packages` configuration. 2024-12-18T15:24:43,373 !! 2024-12-18T15:24:43,374 ******************************************************************************** 2024-12-18T15:24:43,375 ############################ 2024-12-18T15:24:43,375 # Package would be ignored # 2024-12-18T15:24:43,376 ############################ 2024-12-18T15:24:43,376 Python recognizes 'agentp.external.fusion_twas.utils' as an importable package[^1], 2024-12-18T15:24:43,377 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,378 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,379 package, please make sure that 'agentp.external.fusion_twas.utils' is explicitly added 2024-12-18T15:24:43,379 to the `packages` configuration field. 2024-12-18T15:24:43,380 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,382 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,383 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,384 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,385 If you don't want 'agentp.external.fusion_twas.utils' to be distributed and are 2024-12-18T15:24:43,386 already explicitly excluding 'agentp.external.fusion_twas.utils' via 2024-12-18T15:24:43,386 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,387 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,388 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,389 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,393 even if it does not contain any `.py` files. 2024-12-18T15:24:43,394 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,395 directory, all directories are treated like packages. 2024-12-18T15:24:43,396 ******************************************************************************** 2024-12-18T15:24:43,402 !! 2024-12-18T15:24:43,425 check.warn(importable) 2024-12-18T15:24:43,457 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc' is absent from the `packages` configuration. 2024-12-18T15:24:43,481 !! 2024-12-18T15:24:43,508 ******************************************************************************** 2024-12-18T15:24:43,510 ############################ 2024-12-18T15:24:43,511 # Package would be ignored # 2024-12-18T15:24:43,511 ############################ 2024-12-18T15:24:43,512 Python recognizes 'agentp.external.ldsc' as an importable package[^1], 2024-12-18T15:24:43,513 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,514 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,514 package, please make sure that 'agentp.external.ldsc' is explicitly added 2024-12-18T15:24:43,515 to the `packages` configuration field. 2024-12-18T15:24:43,517 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,520 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,528 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,530 If you don't want 'agentp.external.ldsc' to be distributed and are 2024-12-18T15:24:43,531 already explicitly excluding 'agentp.external.ldsc' via 2024-12-18T15:24:43,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,532 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,533 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,534 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,536 even if it does not contain any `.py` files. 2024-12-18T15:24:43,537 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,537 directory, all directories are treated like packages. 2024-12-18T15:24:43,538 ******************************************************************************** 2024-12-18T15:24:43,538 !! 2024-12-18T15:24:43,539 check.warn(importable) 2024-12-18T15:24:43,539 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc.ContinuousAnnotations' is absent from the `packages` configuration. 2024-12-18T15:24:43,540 !! 2024-12-18T15:24:43,541 ******************************************************************************** 2024-12-18T15:24:43,542 ############################ 2024-12-18T15:24:43,542 # Package would be ignored # 2024-12-18T15:24:43,542 ############################ 2024-12-18T15:24:43,543 Python recognizes 'agentp.external.ldsc.ContinuousAnnotations' as an importable package[^1], 2024-12-18T15:24:43,543 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,545 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,545 package, please make sure that 'agentp.external.ldsc.ContinuousAnnotations' is explicitly added 2024-12-18T15:24:43,546 to the `packages` configuration field. 2024-12-18T15:24:43,547 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,548 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,549 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,551 If you don't want 'agentp.external.ldsc.ContinuousAnnotations' to be distributed and are 2024-12-18T15:24:43,551 already explicitly excluding 'agentp.external.ldsc.ContinuousAnnotations' via 2024-12-18T15:24:43,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,553 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,554 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,557 even if it does not contain any `.py` files. 2024-12-18T15:24:43,558 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,559 directory, all directories are treated like packages. 2024-12-18T15:24:43,559 ******************************************************************************** 2024-12-18T15:24:43,561 !! 2024-12-18T15:24:43,561 check.warn(importable) 2024-12-18T15:24:43,562 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.ldsc.ldscore' is absent from the `packages` configuration. 2024-12-18T15:24:43,562 !! 2024-12-18T15:24:43,563 ******************************************************************************** 2024-12-18T15:24:43,563 ############################ 2024-12-18T15:24:43,564 # Package would be ignored # 2024-12-18T15:24:43,564 ############################ 2024-12-18T15:24:43,565 Python recognizes 'agentp.external.ldsc.ldscore' as an importable package[^1], 2024-12-18T15:24:43,566 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,566 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,567 package, please make sure that 'agentp.external.ldsc.ldscore' is explicitly added 2024-12-18T15:24:43,567 to the `packages` configuration field. 2024-12-18T15:24:43,568 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,569 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,570 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,572 If you don't want 'agentp.external.ldsc.ldscore' to be distributed and are 2024-12-18T15:24:43,573 already explicitly excluding 'agentp.external.ldsc.ldscore' via 2024-12-18T15:24:43,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,574 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,575 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,578 even if it does not contain any `.py` files. 2024-12-18T15:24:43,579 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,579 directory, all directories are treated like packages. 2024-12-18T15:24:43,580 ******************************************************************************** 2024-12-18T15:24:43,581 !! 2024-12-18T15:24:43,582 check.warn(importable) 2024-12-18T15:24:43,582 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R' is absent from the `packages` configuration. 2024-12-18T15:24:43,583 !! 2024-12-18T15:24:43,584 ******************************************************************************** 2024-12-18T15:24:43,584 ############################ 2024-12-18T15:24:43,585 # Package would be ignored # 2024-12-18T15:24:43,585 ############################ 2024-12-18T15:24:43,586 Python recognizes 'agentp.external.plink2R' as an importable package[^1], 2024-12-18T15:24:43,586 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,588 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,588 package, please make sure that 'agentp.external.plink2R' is explicitly added 2024-12-18T15:24:43,589 to the `packages` configuration field. 2024-12-18T15:24:43,590 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,591 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,592 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,593 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,594 If you don't want 'agentp.external.plink2R' to be distributed and are 2024-12-18T15:24:43,594 already explicitly excluding 'agentp.external.plink2R' via 2024-12-18T15:24:43,594 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,595 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,595 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,596 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,597 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,598 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,599 even if it does not contain any `.py` files. 2024-12-18T15:24:43,600 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,600 directory, all directories are treated like packages. 2024-12-18T15:24:43,601 ******************************************************************************** 2024-12-18T15:24:43,602 !! 2024-12-18T15:24:43,602 check.warn(importable) 2024-12-18T15:24:43,603 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R' is absent from the `packages` configuration. 2024-12-18T15:24:43,603 !! 2024-12-18T15:24:43,605 ******************************************************************************** 2024-12-18T15:24:43,605 ############################ 2024-12-18T15:24:43,606 # Package would be ignored # 2024-12-18T15:24:43,606 ############################ 2024-12-18T15:24:43,607 Python recognizes 'agentp.external.plink2R.plink2R' as an importable package[^1], 2024-12-18T15:24:43,607 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,608 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,609 package, please make sure that 'agentp.external.plink2R.plink2R' is explicitly added 2024-12-18T15:24:43,609 to the `packages` configuration field. 2024-12-18T15:24:43,610 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,611 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,613 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,615 If you don't want 'agentp.external.plink2R.plink2R' to be distributed and are 2024-12-18T15:24:43,616 already explicitly excluding 'agentp.external.plink2R.plink2R' via 2024-12-18T15:24:43,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,618 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,618 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,620 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,621 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,622 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,622 even if it does not contain any `.py` files. 2024-12-18T15:24:43,623 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,623 directory, all directories are treated like packages. 2024-12-18T15:24:43,624 ******************************************************************************** 2024-12-18T15:24:43,625 !! 2024-12-18T15:24:43,625 check.warn(importable) 2024-12-18T15:24:43,625 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.R' is absent from the `packages` configuration. 2024-12-18T15:24:43,626 !! 2024-12-18T15:24:43,627 ******************************************************************************** 2024-12-18T15:24:43,631 ############################ 2024-12-18T15:24:43,635 # Package would be ignored # 2024-12-18T15:24:43,641 ############################ 2024-12-18T15:24:43,644 Python recognizes 'agentp.external.plink2R.plink2R.R' as an importable package[^1], 2024-12-18T15:24:43,646 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,658 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,666 package, please make sure that 'agentp.external.plink2R.plink2R.R' is explicitly added 2024-12-18T15:24:43,668 to the `packages` configuration field. 2024-12-18T15:24:43,669 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,669 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,670 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,671 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,674 If you don't want 'agentp.external.plink2R.plink2R.R' to be distributed and are 2024-12-18T15:24:43,675 already explicitly excluding 'agentp.external.plink2R.plink2R.R' via 2024-12-18T15:24:43,677 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,682 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,684 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,687 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,687 even if it does not contain any `.py` files. 2024-12-18T15:24:43,688 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,688 directory, all directories are treated like packages. 2024-12-18T15:24:43,689 ******************************************************************************** 2024-12-18T15:24:43,690 !! 2024-12-18T15:24:43,690 check.warn(importable) 2024-12-18T15:24:43,691 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.man' is absent from the `packages` configuration. 2024-12-18T15:24:43,691 !! 2024-12-18T15:24:43,693 ******************************************************************************** 2024-12-18T15:24:43,694 ############################ 2024-12-18T15:24:43,694 # Package would be ignored # 2024-12-18T15:24:43,694 ############################ 2024-12-18T15:24:43,695 Python recognizes 'agentp.external.plink2R.plink2R.man' as an importable package[^1], 2024-12-18T15:24:43,695 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,696 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,697 package, please make sure that 'agentp.external.plink2R.plink2R.man' is explicitly added 2024-12-18T15:24:43,697 to the `packages` configuration field. 2024-12-18T15:24:43,698 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,698 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,699 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,700 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,702 If you don't want 'agentp.external.plink2R.plink2R.man' to be distributed and are 2024-12-18T15:24:43,702 already explicitly excluding 'agentp.external.plink2R.plink2R.man' via 2024-12-18T15:24:43,703 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,704 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,705 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,707 even if it does not contain any `.py` files. 2024-12-18T15:24:43,708 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,709 directory, all directories are treated like packages. 2024-12-18T15:24:43,709 ******************************************************************************** 2024-12-18T15:24:43,710 !! 2024-12-18T15:24:43,711 check.warn(importable) 2024-12-18T15:24:43,711 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.external.plink2R.plink2R.src' is absent from the `packages` configuration. 2024-12-18T15:24:43,712 !! 2024-12-18T15:24:43,713 ******************************************************************************** 2024-12-18T15:24:43,714 ############################ 2024-12-18T15:24:43,714 # Package would be ignored # 2024-12-18T15:24:43,715 ############################ 2024-12-18T15:24:43,715 Python recognizes 'agentp.external.plink2R.plink2R.src' as an importable package[^1], 2024-12-18T15:24:43,716 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,717 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,717 package, please make sure that 'agentp.external.plink2R.plink2R.src' is explicitly added 2024-12-18T15:24:43,718 to the `packages` configuration field. 2024-12-18T15:24:43,720 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,721 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,723 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,725 If you don't want 'agentp.external.plink2R.plink2R.src' to be distributed and are 2024-12-18T15:24:43,725 already explicitly excluding 'agentp.external.plink2R.plink2R.src' via 2024-12-18T15:24:43,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,727 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,727 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,730 even if it does not contain any `.py` files. 2024-12-18T15:24:43,731 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,731 directory, all directories are treated like packages. 2024-12-18T15:24:43,732 ******************************************************************************** 2024-12-18T15:24:43,733 !! 2024-12-18T15:24:43,733 check.warn(importable) 2024-12-18T15:24:43,734 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'agentp.models' is absent from the `packages` configuration. 2024-12-18T15:24:43,734 !! 2024-12-18T15:24:43,735 ******************************************************************************** 2024-12-18T15:24:43,735 ############################ 2024-12-18T15:24:43,736 # Package would be ignored # 2024-12-18T15:24:43,736 ############################ 2024-12-18T15:24:43,737 Python recognizes 'agentp.models' as an importable package[^1], 2024-12-18T15:24:43,737 but it is absent from setuptools' `packages` configuration. 2024-12-18T15:24:43,739 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-18T15:24:43,740 package, please make sure that 'agentp.models' is explicitly added 2024-12-18T15:24:43,741 to the `packages` configuration field. 2024-12-18T15:24:43,742 Alternatively, you can also rely on setuptools' discovery methods 2024-12-18T15:24:43,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-18T15:24:43,743 instead of `find_packages(...)`/`find:`). 2024-12-18T15:24:43,744 You can read more about "package discovery" on setuptools documentation page: 2024-12-18T15:24:43,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-18T15:24:43,747 If you don't want 'agentp.models' to be distributed and are 2024-12-18T15:24:43,747 already explicitly excluding 'agentp.models' via 2024-12-18T15:24:43,748 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-18T15:24:43,748 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-18T15:24:43,749 combination with a more fine grained `package-data` configuration. 2024-12-18T15:24:43,750 You can read more about "package data files" on setuptools documentation page: 2024-12-18T15:24:43,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-18T15:24:43,753 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-18T15:24:43,753 even if it does not contain any `.py` files. 2024-12-18T15:24:43,754 On the other hand, currently there is no concept of package data 2024-12-18T15:24:43,755 directory, all directories are treated like packages. 2024-12-18T15:24:43,755 ******************************************************************************** 2024-12-18T15:24:43,756 !! 2024-12-18T15:24:43,757 check.warn(importable) 2024-12-18T15:24:43,757 creating build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,758 copying agentp/external/MetaXcan/M03_betas.py -> build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,758 copying agentp/external/MetaXcan/M04_zscores.py -> build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,758 copying agentp/external/MetaXcan/PrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,759 copying agentp/external/MetaXcan/Predict.py -> build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,759 copying agentp/external/MetaXcan/SPrediXcan.py -> build/lib/agentp/external/MetaXcan 2024-12-18T15:24:43,760 creating build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,761 copying agentp/external/MetaXcan/metax/Constants.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,761 copying agentp/external/MetaXcan/metax/Exceptions.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,762 copying agentp/external/MetaXcan/metax/Logging.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,762 copying agentp/external/MetaXcan/metax/MatrixManager.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,763 copying agentp/external/MetaXcan/metax/NamingConventions.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,763 copying agentp/external/MetaXcan/metax/PredictionModel.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,764 copying agentp/external/MetaXcan/metax/Utilities.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,764 copying agentp/external/MetaXcan/metax/__init__.py -> build/lib/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,765 creating build/lib/agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:43,765 copying agentp/external/MetaXcan/metax/expression/Expression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:43,766 copying agentp/external/MetaXcan/metax/expression/HDF5Expression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:43,767 copying agentp/external/MetaXcan/metax/expression/PlainTextExpression.py -> build/lib/agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:43,768 creating build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:43,768 copying agentp/external/MetaXcan/metax/genotype/DosageGenotype.py -> build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:43,769 copying agentp/external/MetaXcan/metax/genotype/Genotype.py -> build/lib/agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:43,769 creating build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,770 copying agentp/external/MetaXcan/metax/gwas/GWAS.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,770 copying agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,771 copying agentp/external/MetaXcan/metax/gwas/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,771 creating build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,772 copying agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py -> build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,773 copying agentp/external/MetaXcan/metax/metaxcan/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,773 creating build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,774 copying agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,775 copying agentp/external/MetaXcan/metax/misc/GWASAndModels.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,775 copying agentp/external/MetaXcan/metax/misc/Genomics.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,776 copying agentp/external/MetaXcan/metax/misc/KeyedDataSource.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,777 copying agentp/external/MetaXcan/metax/misc/Math.py -> build/lib/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:43,777 creating build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:43,778 copying agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:43,778 copying agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:43,779 copying agentp/external/MetaXcan/metax/predixcan/Utilities.py -> build/lib/agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:43,779 creating build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,779 copying agentp/external/fusion_twas/FUSION.assoc_test.R -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,780 copying agentp/external/fusion_twas/FUSION.compute_weights.R -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,781 copying agentp/external/fusion_twas/FUSION.post_process.R -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,781 copying agentp/external/fusion_twas/LICENSE -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,782 copying agentp/external/fusion_twas/README.md -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,782 copying agentp/external/fusion_twas/gcta_nr_robust -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,783 copying agentp/external/fusion_twas/glist-hg19 -> build/lib/agentp/external/fusion_twas 2024-12-18T15:24:43,783 creating build/lib/agentp/external/fusion_twas/utils 2024-12-18T15:24:43,784 copying agentp/external/fusion_twas/utils/FUSION.profile_wgt.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-18T15:24:43,785 copying agentp/external/fusion_twas/utils/README.md -> build/lib/agentp/external/fusion_twas/utils 2024-12-18T15:24:43,785 copying agentp/external/fusion_twas/utils/compare_models.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-18T15:24:43,786 copying agentp/external/fusion_twas/utils/make_score.R -> build/lib/agentp/external/fusion_twas/utils 2024-12-18T15:24:43,786 creating build/lib/agentp/external/ldsc 2024-12-18T15:24:43,787 copying agentp/external/ldsc/CHANGELOG -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,787 copying agentp/external/ldsc/LICENSE -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,788 copying agentp/external/ldsc/README.md -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,789 copying agentp/external/ldsc/environment.yml -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,789 copying agentp/external/ldsc/ldsc.py -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,790 copying agentp/external/ldsc/make_annot.py -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,790 copying agentp/external/ldsc/munge_sumstats.py -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,791 copying agentp/external/ldsc/requirements.txt -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,792 copying agentp/external/ldsc/setup.py -> build/lib/agentp/external/ldsc 2024-12-18T15:24:43,792 creating build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,793 copying agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl -> build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,793 copying agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r -> build/lib/agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,794 creating build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,795 copying agentp/external/ldsc/ldscore/__init__.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,795 copying agentp/external/ldsc/ldscore/irwls.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,796 copying agentp/external/ldsc/ldscore/jackknife.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,797 copying agentp/external/ldsc/ldscore/ldscore.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,798 copying agentp/external/ldsc/ldscore/parse.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,799 copying agentp/external/ldsc/ldscore/regressions.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,799 copying agentp/external/ldsc/ldscore/sumstats.py -> build/lib/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,799 creating build/lib/agentp/external/plink2R 2024-12-18T15:24:43,800 copying agentp/external/plink2R/README.md -> build/lib/agentp/external/plink2R 2024-12-18T15:24:43,801 copying agentp/external/plink2R/data.bed -> build/lib/agentp/external/plink2R 2024-12-18T15:24:43,801 copying agentp/external/plink2R/data.bim -> build/lib/agentp/external/plink2R 2024-12-18T15:24:43,802 copying agentp/external/plink2R/data.fam -> build/lib/agentp/external/plink2R 2024-12-18T15:24:43,802 copying agentp/external/plink2R/plink2R.R -> build/lib/agentp/external/plink2R 2024-12-18T15:24:43,803 creating build/lib/agentp/external/plink2R/plink2R 2024-12-18T15:24:43,803 copying agentp/external/plink2R/plink2R/DESCRIPTION -> build/lib/agentp/external/plink2R/plink2R 2024-12-18T15:24:43,804 copying agentp/external/plink2R/plink2R/NAMESPACE -> build/lib/agentp/external/plink2R/plink2R 2024-12-18T15:24:43,804 creating build/lib/agentp/external/plink2R/plink2R/R 2024-12-18T15:24:43,805 copying agentp/external/plink2R/plink2R/R/plink2R.R -> build/lib/agentp/external/plink2R/plink2R/R 2024-12-18T15:24:43,805 creating build/lib/agentp/external/plink2R/plink2R/man 2024-12-18T15:24:43,805 copying agentp/external/plink2R/plink2R/man/plink2R-package.Rd -> build/lib/agentp/external/plink2R/plink2R/man 2024-12-18T15:24:43,806 creating build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,807 copying agentp/external/plink2R/plink2R/src/Makevars -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,807 copying agentp/external/plink2R/plink2R/src/Makevars.win -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,808 copying agentp/external/plink2R/plink2R/src/data.cpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,808 copying agentp/external/plink2R/plink2R/src/data.hpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,809 copying agentp/external/plink2R/plink2R/src/data.o -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,810 copying agentp/external/plink2R/plink2R/src/plink2R.cpp -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,811 copying agentp/external/plink2R/plink2R/src/plink2R.h -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,811 copying agentp/external/plink2R/plink2R/src/plink2R.o -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,812 copying agentp/external/plink2R/plink2R/src/plink2R.so -> build/lib/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:43,813 creating build/lib/agentp/models 2024-12-18T15:24:43,813 copying agentp/models/README.txt -> build/lib/agentp/models 2024-12-18T15:24:43,814 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-18T15:24:43,814 !! 2024-12-18T15:24:43,816 ******************************************************************************** 2024-12-18T15:24:43,816 Please avoid running ``setup.py`` directly. 2024-12-18T15:24:43,817 Instead, use pypa/build, pypa/installer or other 2024-12-18T15:24:43,817 standards-based tools. 2024-12-18T15:24:43,818 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-18T15:24:43,819 ******************************************************************************** 2024-12-18T15:24:43,820 !! 2024-12-18T15:24:43,821 self.initialize_options() 2024-12-18T15:24:43,836 installing to build/bdist.linux-armv7l/wheel 2024-12-18T15:24:43,837 running install 2024-12-18T15:24:43,862 running install_lib 2024-12-18T15:24:43,890 creating build/bdist.linux-armv7l/wheel 2024-12-18T15:24:43,893 creating build/bdist.linux-armv7l/wheel/agentp 2024-12-18T15:24:43,895 creating build/bdist.linux-armv7l/wheel/agentp/models 2024-12-18T15:24:43,896 copying build/lib/agentp/models/README.txt -> build/bdist.linux-armv7l/wheel/./agentp/models 2024-12-18T15:24:43,899 copying build/lib/agentp/Project.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,903 copying build/lib/agentp/TWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,906 copying build/lib/agentp/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,908 copying build/lib/agentp/GWAS.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,910 copying build/lib/agentp/Genotypes.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,912 copying build/lib/agentp/GREX.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,915 copying build/lib/agentp/Static.py -> build/bdist.linux-armv7l/wheel/./agentp 2024-12-18T15:24:43,917 creating build/bdist.linux-armv7l/wheel/agentp/external 2024-12-18T15:24:43,919 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc 2024-12-18T15:24:43,921 copying build/lib/agentp/external/ldsc/CHANGELOG -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,923 copying build/lib/agentp/external/ldsc/ldsc.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,927 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc/ldscore 2024-12-18T15:24:43,928 copying build/lib/agentp/external/ldsc/ldscore/ldscore.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,931 copying build/lib/agentp/external/ldsc/ldscore/regressions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,933 copying build/lib/agentp/external/ldsc/ldscore/sumstats.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,936 copying build/lib/agentp/external/ldsc/ldscore/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,937 copying build/lib/agentp/external/ldsc/ldscore/parse.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,940 copying build/lib/agentp/external/ldsc/ldscore/irwls.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,942 copying build/lib/agentp/external/ldsc/ldscore/jackknife.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ldscore 2024-12-18T15:24:43,947 copying build/lib/agentp/external/ldsc/munge_sumstats.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,953 copying build/lib/agentp/external/ldsc/environment.yml -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,956 copying build/lib/agentp/external/ldsc/setup.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,958 creating build/bdist.linux-armv7l/wheel/agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,959 copying build/lib/agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,962 copying build/lib/agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc/ContinuousAnnotations 2024-12-18T15:24:43,964 copying build/lib/agentp/external/ldsc/make_annot.py -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,967 copying build/lib/agentp/external/ldsc/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,970 copying build/lib/agentp/external/ldsc/requirements.txt -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,972 copying build/lib/agentp/external/ldsc/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/ldsc 2024-12-18T15:24:43,975 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan 2024-12-18T15:24:43,977 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax 2024-12-18T15:24:43,979 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,981 copying build/lib/agentp/external/MetaXcan/metax/metaxcan/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,983 copying build/lib/agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/metaxcan 2024-12-18T15:24:43,986 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,987 copying build/lib/agentp/external/MetaXcan/metax/gwas/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,990 copying build/lib/agentp/external/MetaXcan/metax/gwas/GWAS.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,992 copying build/lib/agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/gwas 2024-12-18T15:24:43,995 copying build/lib/agentp/external/MetaXcan/metax/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:43,999 copying build/lib/agentp/external/MetaXcan/metax/Constants.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,002 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,004 copying build/lib/agentp/external/MetaXcan/metax/misc/KeyedDataSource.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,007 copying build/lib/agentp/external/MetaXcan/metax/misc/GWASAndModels.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,009 copying build/lib/agentp/external/MetaXcan/metax/misc/Math.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,011 copying build/lib/agentp/external/MetaXcan/metax/misc/Genomics.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,013 copying build/lib/agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/misc 2024-12-18T15:24:44,015 copying build/lib/agentp/external/MetaXcan/metax/MatrixManager.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,017 copying build/lib/agentp/external/MetaXcan/metax/Logging.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,019 copying build/lib/agentp/external/MetaXcan/metax/__init__.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,021 copying build/lib/agentp/external/MetaXcan/metax/NamingConventions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,024 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:44,026 copying build/lib/agentp/external/MetaXcan/metax/predixcan/Utilities.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:44,029 copying build/lib/agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:44,031 copying build/lib/agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/predixcan 2024-12-18T15:24:44,034 copying build/lib/agentp/external/MetaXcan/metax/Exceptions.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,037 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:44,038 copying build/lib/agentp/external/MetaXcan/metax/expression/PlainTextExpression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:44,041 copying build/lib/agentp/external/MetaXcan/metax/expression/HDF5Expression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:44,044 copying build/lib/agentp/external/MetaXcan/metax/expression/Expression.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/expression 2024-12-18T15:24:44,046 copying build/lib/agentp/external/MetaXcan/metax/PredictionModel.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax 2024-12-18T15:24:44,051 creating build/bdist.linux-armv7l/wheel/agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:44,053 copying build/lib/agentp/external/MetaXcan/metax/genotype/Genotype.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:44,055 copying build/lib/agentp/external/MetaXcan/metax/genotype/DosageGenotype.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan/metax/genotype 2024-12-18T15:24:44,058 copying build/lib/agentp/external/MetaXcan/SPrediXcan.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-18T15:24:44,061 copying build/lib/agentp/external/MetaXcan/M04_zscores.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-18T15:24:44,063 copying build/lib/agentp/external/MetaXcan/M03_betas.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-18T15:24:44,066 copying build/lib/agentp/external/MetaXcan/Predict.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-18T15:24:44,069 copying build/lib/agentp/external/MetaXcan/PrediXcanAssociation.py -> build/bdist.linux-armv7l/wheel/./agentp/external/MetaXcan 2024-12-18T15:24:44,072 creating build/bdist.linux-armv7l/wheel/agentp/external/fusion_twas 2024-12-18T15:24:44,074 creating build/bdist.linux-armv7l/wheel/agentp/external/fusion_twas/utils 2024-12-18T15:24:44,076 copying build/lib/agentp/external/fusion_twas/utils/compare_models.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-18T15:24:44,078 copying build/lib/agentp/external/fusion_twas/utils/FUSION.profile_wgt.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-18T15:24:44,081 copying build/lib/agentp/external/fusion_twas/utils/make_score.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-18T15:24:44,083 copying build/lib/agentp/external/fusion_twas/utils/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas/utils 2024-12-18T15:24:44,085 copying build/lib/agentp/external/fusion_twas/glist-hg19 -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,101 copying build/lib/agentp/external/fusion_twas/FUSION.post_process.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,104 copying build/lib/agentp/external/fusion_twas/gcta_nr_robust -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,281 copying build/lib/agentp/external/fusion_twas/FUSION.compute_weights.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,283 copying build/lib/agentp/external/fusion_twas/LICENSE -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,286 copying build/lib/agentp/external/fusion_twas/FUSION.assoc_test.R -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,288 copying build/lib/agentp/external/fusion_twas/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/fusion_twas 2024-12-18T15:24:44,291 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R 2024-12-18T15:24:44,292 copying build/lib/agentp/external/plink2R/data.fam -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-18T15:24:44,295 copying build/lib/agentp/external/plink2R/plink2R.R -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-18T15:24:44,297 copying build/lib/agentp/external/plink2R/data.bim -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-18T15:24:44,307 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R 2024-12-18T15:24:44,308 copying build/lib/agentp/external/plink2R/plink2R/NAMESPACE -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R 2024-12-18T15:24:44,311 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/R 2024-12-18T15:24:44,313 copying build/lib/agentp/external/plink2R/plink2R/R/plink2R.R -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/R 2024-12-18T15:24:44,316 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,318 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.so -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,322 copying build/lib/agentp/external/plink2R/plink2R/src/data.hpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,324 copying build/lib/agentp/external/plink2R/plink2R/src/data.cpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,326 copying build/lib/agentp/external/plink2R/plink2R/src/data.o -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,329 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.o -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,333 copying build/lib/agentp/external/plink2R/plink2R/src/Makevars.win -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,335 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.cpp -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,337 copying build/lib/agentp/external/plink2R/plink2R/src/plink2R.h -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,339 copying build/lib/agentp/external/plink2R/plink2R/src/Makevars -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/src 2024-12-18T15:24:44,341 creating build/bdist.linux-armv7l/wheel/agentp/external/plink2R/plink2R/man 2024-12-18T15:24:44,342 copying build/lib/agentp/external/plink2R/plink2R/man/plink2R-package.Rd -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R/man 2024-12-18T15:24:44,345 copying build/lib/agentp/external/plink2R/plink2R/DESCRIPTION -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R/plink2R 2024-12-18T15:24:44,346 copying build/lib/agentp/external/plink2R/README.md -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-18T15:24:44,349 copying build/lib/agentp/external/plink2R/data.bed -> build/bdist.linux-armv7l/wheel/./agentp/external/plink2R 2024-12-18T15:24:44,399 running install_egg_info 2024-12-18T15:24:44,433 Copying agentp.egg-info to build/bdist.linux-armv7l/wheel/./agentp-0.1.0-py3.11.egg-info 2024-12-18T15:24:44,444 running install_scripts 2024-12-18T15:24:44,457 creating build/bdist.linux-armv7l/wheel/agentp-0.1.0.dist-info/WHEEL 2024-12-18T15:24:44,459 creating '/tmp/pip-wheel-08f3uw6b/agentp-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-18T15:24:44,463 adding 'agentp/GREX.py' 2024-12-18T15:24:44,464 adding 'agentp/GWAS.py' 2024-12-18T15:24:44,466 adding 'agentp/Genotypes.py' 2024-12-18T15:24:44,468 adding 'agentp/Project.py' 2024-12-18T15:24:44,470 adding 'agentp/Static.py' 2024-12-18T15:24:44,472 adding 'agentp/TWAS.py' 2024-12-18T15:24:44,473 adding 'agentp/__init__.py' 2024-12-18T15:24:44,476 adding 'agentp/external/MetaXcan/M03_betas.py' 2024-12-18T15:24:44,478 adding 'agentp/external/MetaXcan/M04_zscores.py' 2024-12-18T15:24:44,479 adding 'agentp/external/MetaXcan/PrediXcanAssociation.py' 2024-12-18T15:24:44,481 adding 'agentp/external/MetaXcan/Predict.py' 2024-12-18T15:24:44,483 adding 'agentp/external/MetaXcan/SPrediXcan.py' 2024-12-18T15:24:44,485 adding 'agentp/external/MetaXcan/metax/Constants.py' 2024-12-18T15:24:44,486 adding 'agentp/external/MetaXcan/metax/Exceptions.py' 2024-12-18T15:24:44,488 adding 'agentp/external/MetaXcan/metax/Logging.py' 2024-12-18T15:24:44,489 adding 'agentp/external/MetaXcan/metax/MatrixManager.py' 2024-12-18T15:24:44,491 adding 'agentp/external/MetaXcan/metax/NamingConventions.py' 2024-12-18T15:24:44,492 adding 'agentp/external/MetaXcan/metax/PredictionModel.py' 2024-12-18T15:24:44,494 adding 'agentp/external/MetaXcan/metax/Utilities.py' 2024-12-18T15:24:44,495 adding 'agentp/external/MetaXcan/metax/__init__.py' 2024-12-18T15:24:44,497 adding 'agentp/external/MetaXcan/metax/expression/Expression.py' 2024-12-18T15:24:44,499 adding 'agentp/external/MetaXcan/metax/expression/HDF5Expression.py' 2024-12-18T15:24:44,500 adding 'agentp/external/MetaXcan/metax/expression/PlainTextExpression.py' 2024-12-18T15:24:44,502 adding 'agentp/external/MetaXcan/metax/genotype/DosageGenotype.py' 2024-12-18T15:24:44,503 adding 'agentp/external/MetaXcan/metax/genotype/Genotype.py' 2024-12-18T15:24:44,506 adding 'agentp/external/MetaXcan/metax/gwas/GWAS.py' 2024-12-18T15:24:44,507 adding 'agentp/external/MetaXcan/metax/gwas/GWASSpecialHandling.py' 2024-12-18T15:24:44,509 adding 'agentp/external/MetaXcan/metax/gwas/Utilities.py' 2024-12-18T15:24:44,511 adding 'agentp/external/MetaXcan/metax/metaxcan/AssociationCalculation.py' 2024-12-18T15:24:44,513 adding 'agentp/external/MetaXcan/metax/metaxcan/Utilities.py' 2024-12-18T15:24:44,515 adding 'agentp/external/MetaXcan/metax/misc/DataFrameStreamer.py' 2024-12-18T15:24:44,517 adding 'agentp/external/MetaXcan/metax/misc/GWASAndModels.py' 2024-12-18T15:24:44,518 adding 'agentp/external/MetaXcan/metax/misc/Genomics.py' 2024-12-18T15:24:44,520 adding 'agentp/external/MetaXcan/metax/misc/KeyedDataSource.py' 2024-12-18T15:24:44,521 adding 'agentp/external/MetaXcan/metax/misc/Math.py' 2024-12-18T15:24:44,523 adding 'agentp/external/MetaXcan/metax/predixcan/MultiPrediXcanAssociation.py' 2024-12-18T15:24:44,525 adding 'agentp/external/MetaXcan/metax/predixcan/PrediXcanAssociation.py' 2024-12-18T15:24:44,527 adding 'agentp/external/MetaXcan/metax/predixcan/Utilities.py' 2024-12-18T15:24:44,530 adding 'agentp/external/fusion_twas/FUSION.assoc_test.R' 2024-12-18T15:24:44,533 adding 'agentp/external/fusion_twas/FUSION.compute_weights.R' 2024-12-18T15:24:44,537 adding 'agentp/external/fusion_twas/FUSION.post_process.R' 2024-12-18T15:24:44,543 adding 'agentp/external/fusion_twas/LICENSE' 2024-12-18T15:24:44,544 adding 'agentp/external/fusion_twas/README.md' 2024-12-18T15:24:46,069 adding 'agentp/external/fusion_twas/gcta_nr_robust' 2024-12-18T15:24:46,314 adding 'agentp/external/fusion_twas/glist-hg19' 2024-12-18T15:24:46,321 adding 'agentp/external/fusion_twas/utils/FUSION.profile_wgt.R' 2024-12-18T15:24:46,322 adding 'agentp/external/fusion_twas/utils/README.md' 2024-12-18T15:24:46,323 adding 'agentp/external/fusion_twas/utils/compare_models.R' 2024-12-18T15:24:46,325 adding 'agentp/external/fusion_twas/utils/make_score.R' 2024-12-18T15:24:46,327 adding 'agentp/external/ldsc/CHANGELOG' 2024-12-18T15:24:46,333 adding 'agentp/external/ldsc/LICENSE' 2024-12-18T15:24:46,334 adding 'agentp/external/ldsc/README.md' 2024-12-18T15:24:46,335 adding 'agentp/external/ldsc/environment.yml' 2024-12-18T15:24:46,339 adding 'agentp/external/ldsc/ldsc.py' 2024-12-18T15:24:46,341 adding 'agentp/external/ldsc/make_annot.py' 2024-12-18T15:24:46,344 adding 'agentp/external/ldsc/munge_sumstats.py' 2024-12-18T15:24:46,345 adding 'agentp/external/ldsc/requirements.txt' 2024-12-18T15:24:46,347 adding 'agentp/external/ldsc/setup.py' 2024-12-18T15:24:46,349 adding 'agentp/external/ldsc/ContinuousAnnotations/quantile_M.pl' 2024-12-18T15:24:46,350 adding 'agentp/external/ldsc/ContinuousAnnotations/quantile_h2g.r' 2024-12-18T15:24:46,352 adding 'agentp/external/ldsc/ldscore/__init__.py' 2024-12-18T15:24:46,354 adding 'agentp/external/ldsc/ldscore/irwls.py' 2024-12-18T15:24:46,356 adding 'agentp/external/ldsc/ldscore/jackknife.py' 2024-12-18T15:24:46,358 adding 'agentp/external/ldsc/ldscore/ldscore.py' 2024-12-18T15:24:46,360 adding 'agentp/external/ldsc/ldscore/parse.py' 2024-12-18T15:24:46,363 adding 'agentp/external/ldsc/ldscore/regressions.py' 2024-12-18T15:24:46,366 adding 'agentp/external/ldsc/ldscore/sumstats.py' 2024-12-18T15:24:46,368 adding 'agentp/external/plink2R/README.md' 2024-12-18T15:24:47,163 adding 'agentp/external/plink2R/data.bed' 2024-12-18T15:24:47,282 adding 'agentp/external/plink2R/data.bim' 2024-12-18T15:24:47,288 adding 'agentp/external/plink2R/data.fam' 2024-12-18T15:24:47,290 adding 'agentp/external/plink2R/plink2R.R' 2024-12-18T15:24:47,291 adding 'agentp/external/plink2R/plink2R/DESCRIPTION' 2024-12-18T15:24:47,292 adding 'agentp/external/plink2R/plink2R/NAMESPACE' 2024-12-18T15:24:47,294 adding 'agentp/external/plink2R/plink2R/R/plink2R.R' 2024-12-18T15:24:47,295 adding 'agentp/external/plink2R/plink2R/man/plink2R-package.Rd' 2024-12-18T15:24:47,297 adding 'agentp/external/plink2R/plink2R/src/Makevars' 2024-12-18T15:24:47,299 adding 'agentp/external/plink2R/plink2R/src/Makevars.win' 2024-12-18T15:24:47,300 adding 'agentp/external/plink2R/plink2R/src/data.cpp' 2024-12-18T15:24:47,302 adding 'agentp/external/plink2R/plink2R/src/data.hpp' 2024-12-18T15:24:47,307 adding 'agentp/external/plink2R/plink2R/src/data.o' 2024-12-18T15:24:47,308 adding 'agentp/external/plink2R/plink2R/src/plink2R.cpp' 2024-12-18T15:24:47,309 adding 'agentp/external/plink2R/plink2R/src/plink2R.h' 2024-12-18T15:24:47,322 adding 'agentp/external/plink2R/plink2R/src/plink2R.o' 2024-12-18T15:24:47,340 adding 'agentp/external/plink2R/plink2R/src/plink2R.so' 2024-12-18T15:24:47,343 adding 'agentp/models/README.txt' 2024-12-18T15:24:47,345 adding 'agentp-0.1.0.dist-info/METADATA' 2024-12-18T15:24:47,346 adding 'agentp-0.1.0.dist-info/WHEEL' 2024-12-18T15:24:47,347 adding 'agentp-0.1.0.dist-info/top_level.txt' 2024-12-18T15:24:47,349 adding 'agentp-0.1.0.dist-info/RECORD' 2024-12-18T15:24:47,430 removing build/bdist.linux-armv7l/wheel 2024-12-18T15:24:47,587 Building wheel for agentp (setup.py): finished with status 'done' 2024-12-18T15:24:47,654 Created wheel for agentp: filename=agentp-0.1.0-py3-none-any.whl size=6568131 sha256=3ecca6c94bc77170c69aea6984217a60370c5eb01ad0dbbe6bcfc83be62aa57f 2024-12-18T15:24:47,656 Stored in directory: /tmp/pip-ephem-wheel-cache-nhwnm2w9/wheels/c4/3e/64/9b7f6533d95391387a8270bf9c7889932c0ce650ee28b9b5a2 2024-12-18T15:24:47,670 Successfully built agentp 2024-12-18T15:24:47,888 Removed build tracker: '/tmp/pip-build-tracker-cjeat2q3'