2024-12-20T04:31:13,184 Disabling truststore because Python version isn't 3.10+ 2024-12-20T04:31:13,905 Created temporary directory: /tmp/pip-build-tracker-9unt3fbz 2024-12-20T04:31:13,906 Initialized build tracking at /tmp/pip-build-tracker-9unt3fbz 2024-12-20T04:31:13,906 Created build tracker: /tmp/pip-build-tracker-9unt3fbz 2024-12-20T04:31:13,906 Entered build tracker: /tmp/pip-build-tracker-9unt3fbz 2024-12-20T04:31:13,907 Created temporary directory: /tmp/pip-wheel-o8z0frnz 2024-12-20T04:31:13,917 Created temporary directory: /tmp/pip-ephem-wheel-cache-j8mqexih 2024-12-20T04:31:13,983 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-20T04:31:13,988 2 location(s) to search for versions of rsalor: 2024-12-20T04:31:13,988 * https://pypi.org/simple/rsalor/ 2024-12-20T04:31:13,988 * https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:13,988 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2024-12-20T04:31:13,989 Getting page https://pypi.org/simple/rsalor/ 2024-12-20T04:31:13,991 Found index url https://pypi.org/simple/ 2024-12-20T04:31:14,016 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2024-12-20T04:31:14,019 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2024-12-20T04:31:14,020 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2024-12-20T04:31:14,020 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2024-12-20T04:31:14,021 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2024-12-20T04:31:14,022 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:14,022 Getting page https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:14,024 Found index url https://www.piwheels.org/simple/ 2024-12-20T04:31:14,065 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2024-12-20T04:31:14,068 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:14,068 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:14,068 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:14,068 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:14,069 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:14,069 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2024-12-20T04:31:14,084 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2024-12-20T04:31:14,085 Collecting rsalor==1.0.2 2024-12-20T04:31:14,087 Created temporary directory: /tmp/pip-unpack-fp761e6k 2024-12-20T04:31:14,178 Downloading rsalor-1.0.2.tar.gz (48 kB) 2024-12-20T04:31:14,277 Added rsalor==1.0.2 from https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-9unt3fbz' 2024-12-20T04:31:14,279 Running setup.py (path:/tmp/pip-wheel-o8z0frnz/rsalor_d6895fa087e84a1da226c5ae07efd7e6/setup.py) egg_info for package rsalor 2024-12-20T04:31:14,279 Created temporary directory: /tmp/pip-pip-egg-info-9fur1uqf 2024-12-20T04:31:14,280 Preparing metadata (setup.py): started 2024-12-20T04:31:14,281 Running command python setup.py egg_info 2024-12-20T04:31:15,355 running egg_info 2024-12-20T04:31:15,382 creating /tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info 2024-12-20T04:31:15,383 writing /tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/PKG-INFO 2024-12-20T04:31:15,387 writing dependency_links to /tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/dependency_links.txt 2024-12-20T04:31:15,389 writing requirements to /tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/requires.txt 2024-12-20T04:31:15,390 writing top-level names to /tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/top_level.txt 2024-12-20T04:31:15,391 writing manifest file '/tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:15,511 reading manifest file '/tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:15,512 reading manifest template 'MANIFEST.in' 2024-12-20T04:31:15,523 warning: no previously-included files found matching 'fig/*' 2024-12-20T04:31:15,524 warning: no previously-included files found matching 'src/*' 2024-12-20T04:31:15,525 warning: no previously-included files found matching 'tmp/*' 2024-12-20T04:31:15,525 warning: no previously-included files found matching '0_*' 2024-12-20T04:31:15,526 warning: no previously-included files found matching 'conda-env.yml' 2024-12-20T04:31:15,527 warning: no previously-included files found matching 'test_data/*' 2024-12-20T04:31:15,527 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-12-20T04:31:15,528 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2024-12-20T04:31:15,529 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-12-20T04:31:15,530 warning: no previously-included files matching '*.a' found anywhere in distribution 2024-12-20T04:31:15,530 warning: no previously-included files matching '*.o' found anywhere in distribution 2024-12-20T04:31:15,531 warning: no previously-included files matching 'build/*' found anywhere in distribution 2024-12-20T04:31:15,532 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2024-12-20T04:31:15,532 adding license file 'LICENCE' 2024-12-20T04:31:15,536 writing manifest file '/tmp/pip-pip-egg-info-9fur1uqf/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:15,624 Preparing metadata (setup.py): finished with status 'done' 2024-12-20T04:31:15,630 Source in /tmp/pip-wheel-o8z0frnz/rsalor_d6895fa087e84a1da226c5ae07efd7e6 has version 1.0.2, which satisfies requirement rsalor==1.0.2 from https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz 2024-12-20T04:31:15,631 Removed rsalor==1.0.2 from https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-9unt3fbz' 2024-12-20T04:31:15,638 Created temporary directory: /tmp/pip-unpack-0_cvv_bh 2024-12-20T04:31:15,639 Created temporary directory: /tmp/pip-unpack-a1dbahhi 2024-12-20T04:31:15,639 Building wheels for collected packages: rsalor 2024-12-20T04:31:15,643 Created temporary directory: /tmp/pip-wheel-5vvxkc1i 2024-12-20T04:31:15,644 Building wheel for rsalor (setup.py): started 2024-12-20T04:31:15,645 Destination directory: /tmp/pip-wheel-5vvxkc1i 2024-12-20T04:31:15,645 Running command python setup.py bdist_wheel 2024-12-20T04:31:16,666 running bdist_wheel 2024-12-20T04:31:16,797 running build 2024-12-20T04:31:16,798 running build_py 2024-12-20T04:31:16,827 creating build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:16,829 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:16,832 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:16,835 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:16,836 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:16,838 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:16,840 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,842 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,845 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,847 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,849 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,851 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:16,854 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:16,855 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:16,858 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:16,860 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:16,863 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,864 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,867 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,870 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,872 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,875 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,878 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:16,880 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,882 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,884 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,886 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,888 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,890 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:16,899 running build_ext 2024-12-20T04:31:17,388 building 'rsalor.weights.lib_computeWeightsBackend' extension 2024-12-20T04:31:17,388 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:17,391 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp 2024-12-20T04:31:18,840 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2024-12-20T04:31:18,840 rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2024-12-20T04:31:18,841 48 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2024-12-20T04:31:18,841 | ~~^~~~~~~~~~~ 2024-12-20T04:31:19,363 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp 2024-12-20T04:31:20,627 rsalor/weights/msa.cpp: In member function ‘std::vector MSA::computeWeights()’: 2024-12-20T04:31:20,627 rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable] 2024-12-20T04:31:20,628 115 | auto num_threads = this->num_threads; 2024-12-20T04:31:20,628 | ^~~~~~~~~~~ 2024-12-20T04:31:22,588 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -fopenmp -O3 2024-12-20T04:31:22,918 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-20T04:31:22,918 !! 2024-12-20T04:31:22,919 ******************************************************************************** 2024-12-20T04:31:22,919 Please avoid running ``setup.py`` directly. 2024-12-20T04:31:22,919 Instead, use pypa/build, pypa/installer or other 2024-12-20T04:31:22,919 standards-based tools. 2024-12-20T04:31:22,919 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-20T04:31:22,919 ******************************************************************************** 2024-12-20T04:31:22,920 !! 2024-12-20T04:31:22,920 self.initialize_options() 2024-12-20T04:31:22,943 installing to build/bdist.linux-armv7l/wheel 2024-12-20T04:31:22,943 running install 2024-12-20T04:31:22,970 running install_lib 2024-12-20T04:31:22,996 creating build/bdist.linux-armv7l/wheel 2024-12-20T04:31:22,999 creating build/bdist.linux-armv7l/wheel/rsalor 2024-12-20T04:31:23,000 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2024-12-20T04:31:23,003 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2024-12-20T04:31:23,006 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2024-12-20T04:31:23,007 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:23,011 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:23,020 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:23,023 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2024-12-20T04:31:23,024 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:23,027 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:23,029 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:23,030 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:23,032 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:23,036 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2024-12-20T04:31:23,037 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:23,039 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:23,041 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:23,044 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2024-12-20T04:31:23,045 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,048 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,050 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,052 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,054 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,057 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:23,059 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2024-12-20T04:31:23,061 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:23,062 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:23,064 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:23,066 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:23,068 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:23,071 running install_egg_info 2024-12-20T04:31:23,105 running egg_info 2024-12-20T04:31:23,134 writing rsalor.egg-info/PKG-INFO 2024-12-20T04:31:23,138 writing dependency_links to rsalor.egg-info/dependency_links.txt 2024-12-20T04:31:23,139 writing requirements to rsalor.egg-info/requires.txt 2024-12-20T04:31:23,140 writing top-level names to rsalor.egg-info/top_level.txt 2024-12-20T04:31:23,179 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:23,183 reading manifest template 'MANIFEST.in' 2024-12-20T04:31:23,191 warning: no previously-included files found matching 'fig/*' 2024-12-20T04:31:23,192 warning: no previously-included files found matching 'src/*' 2024-12-20T04:31:23,192 warning: no previously-included files found matching 'tmp/*' 2024-12-20T04:31:23,193 warning: no previously-included files found matching '0_*' 2024-12-20T04:31:23,193 warning: no previously-included files found matching 'conda-env.yml' 2024-12-20T04:31:23,194 warning: no previously-included files found matching 'test_data/*' 2024-12-20T04:31:23,195 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-12-20T04:31:23,196 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2024-12-20T04:31:23,196 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-12-20T04:31:23,197 warning: no previously-included files matching '*.a' found anywhere in distribution 2024-12-20T04:31:23,198 warning: no previously-included files matching '*.o' found anywhere in distribution 2024-12-20T04:31:23,198 warning: no previously-included files matching 'build/*' found anywhere in distribution 2024-12-20T04:31:23,199 adding license file 'LICENCE' 2024-12-20T04:31:23,204 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:23,206 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.2-py3.9.egg-info 2024-12-20T04:31:23,217 running install_scripts 2024-12-20T04:31:23,272 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.2.dist-info/WHEEL 2024-12-20T04:31:23,274 creating '/tmp/pip-wheel-5vvxkc1i/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-20T04:31:23,276 adding 'rsalor/__init__.py' 2024-12-20T04:31:23,281 adding 'rsalor/msa.py' 2024-12-20T04:31:23,283 adding 'rsalor/rsa/__init__.py' 2024-12-20T04:31:23,285 adding 'rsalor/rsa/rsa_biopython.py' 2024-12-20T04:31:23,286 adding 'rsalor/rsa/rsa_dssp.py' 2024-12-20T04:31:23,288 adding 'rsalor/rsa/rsa_music.py' 2024-12-20T04:31:23,290 adding 'rsalor/rsa/rsa_solver.py' 2024-12-20T04:31:23,291 adding 'rsalor/sequence/__init__.py' 2024-12-20T04:31:23,294 adding 'rsalor/sequence/amino_acid.py' 2024-12-20T04:31:23,296 adding 'rsalor/sequence/fasta_reader.py' 2024-12-20T04:31:23,297 adding 'rsalor/sequence/mutation.py' 2024-12-20T04:31:23,299 adding 'rsalor/sequence/pairwise_alignment.py' 2024-12-20T04:31:23,300 adding 'rsalor/sequence/sequence.py' 2024-12-20T04:31:23,302 adding 'rsalor/structure/__init__.py' 2024-12-20T04:31:23,303 adding 'rsalor/structure/residue.py' 2024-12-20T04:31:23,305 adding 'rsalor/structure/structure.py' 2024-12-20T04:31:23,308 adding 'rsalor/utils/CSV.py' 2024-12-20T04:31:23,310 adding 'rsalor/utils/__init__.py' 2024-12-20T04:31:23,311 adding 'rsalor/utils/ali_to_fasta.py' 2024-12-20T04:31:23,312 adding 'rsalor/utils/logger.py' 2024-12-20T04:31:23,314 adding 'rsalor/utils/utils.py' 2024-12-20T04:31:23,315 adding 'rsalor/weights/__init__.py' 2024-12-20T04:31:23,317 adding 'rsalor/weights/compute_weights.py' 2024-12-20T04:31:23,392 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2024-12-20T04:31:23,397 adding 'rsalor-1.0.2.dist-info/LICENCE' 2024-12-20T04:31:23,398 adding 'rsalor-1.0.2.dist-info/METADATA' 2024-12-20T04:31:23,399 adding 'rsalor-1.0.2.dist-info/WHEEL' 2024-12-20T04:31:23,400 adding 'rsalor-1.0.2.dist-info/top_level.txt' 2024-12-20T04:31:23,401 adding 'rsalor-1.0.2.dist-info/RECORD' 2024-12-20T04:31:23,405 removing build/bdist.linux-armv7l/wheel 2024-12-20T04:31:23,540 Building wheel for rsalor (setup.py): finished with status 'done' 2024-12-20T04:31:23,545 Created wheel for rsalor: filename=rsalor-1.0.2-cp39-cp39-linux_armv7l.whl size=183806 sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c 2024-12-20T04:31:23,546 Stored in directory: /tmp/pip-ephem-wheel-cache-j8mqexih/wheels/70/ad/33/a578ca13a11c888cd173ef432e4bf28103628eb889cd276173 2024-12-20T04:31:23,558 Successfully built rsalor 2024-12-20T04:31:23,568 Removed build tracker: '/tmp/pip-build-tracker-9unt3fbz'