2024-12-20T04:31:26,100 Disabling truststore because Python version isn't 3.10+ 2024-12-20T04:31:26,611 Created temporary directory: /tmp/pip-build-tracker-1g7qa9gq 2024-12-20T04:31:26,612 Initialized build tracking at /tmp/pip-build-tracker-1g7qa9gq 2024-12-20T04:31:26,612 Created build tracker: /tmp/pip-build-tracker-1g7qa9gq 2024-12-20T04:31:26,612 Entered build tracker: /tmp/pip-build-tracker-1g7qa9gq 2024-12-20T04:31:26,613 Created temporary directory: /tmp/pip-wheel-psp6reqk 2024-12-20T04:31:26,618 Created temporary directory: /tmp/pip-ephem-wheel-cache-jsbvjuz4 2024-12-20T04:31:26,662 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-20T04:31:26,665 2 location(s) to search for versions of rsalor: 2024-12-20T04:31:26,665 * https://pypi.org/simple/rsalor/ 2024-12-20T04:31:26,665 * https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:26,668 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2024-12-20T04:31:26,668 Getting page https://pypi.org/simple/rsalor/ 2024-12-20T04:31:26,670 Found index url https://pypi.org/simple/ 2024-12-20T04:31:26,691 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2024-12-20T04:31:26,693 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2024-12-20T04:31:26,694 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2024-12-20T04:31:26,694 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2024-12-20T04:31:26,695 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2024-12-20T04:31:26,695 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:26,695 Getting page https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:26,696 Found index url https://www.piwheels.org/simple/ 2024-12-20T04:31:26,741 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2024-12-20T04:31:26,743 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:26,744 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:26,744 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:26,744 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2024-12-20T04:31:26,744 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2024-12-20T04:31:26,744 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2024-12-20T04:31:26,761 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2024-12-20T04:31:26,762 Collecting rsalor==1.0.3 2024-12-20T04:31:26,765 Created temporary directory: /tmp/pip-unpack-ul3dxj5e 2024-12-20T04:31:26,855 Downloading rsalor-1.0.3.tar.gz (48 kB) 2024-12-20T04:31:26,952 Added rsalor==1.0.3 from https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-1g7qa9gq' 2024-12-20T04:31:26,954 Running setup.py (path:/tmp/pip-wheel-psp6reqk/rsalor_ee413f0e95f94e1ea518cffd7cbbc57e/setup.py) egg_info for package rsalor 2024-12-20T04:31:26,954 Created temporary directory: /tmp/pip-pip-egg-info-9ha9tz_h 2024-12-20T04:31:26,955 Preparing metadata (setup.py): started 2024-12-20T04:31:26,956 Running command python setup.py egg_info 2024-12-20T04:31:28,075 running egg_info 2024-12-20T04:31:28,111 creating /tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info 2024-12-20T04:31:28,114 writing /tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/PKG-INFO 2024-12-20T04:31:28,117 writing dependency_links to /tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/dependency_links.txt 2024-12-20T04:31:28,119 writing requirements to /tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/requires.txt 2024-12-20T04:31:28,120 writing top-level names to /tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/top_level.txt 2024-12-20T04:31:28,122 writing manifest file '/tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:28,265 reading manifest file '/tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:28,267 reading manifest template 'MANIFEST.in' 2024-12-20T04:31:28,268 warning: no files found matching 'pycofitness/plmdca/include/*' 2024-12-20T04:31:28,276 warning: no previously-included files found matching 'fig/*' 2024-12-20T04:31:28,276 warning: no previously-included files found matching 'src/*' 2024-12-20T04:31:28,277 warning: no previously-included files found matching 'tmp/*' 2024-12-20T04:31:28,277 warning: no previously-included files found matching '0_*' 2024-12-20T04:31:28,278 warning: no previously-included files found matching 'conda-env.yml' 2024-12-20T04:31:28,278 warning: no previously-included files found matching 'test_data/*' 2024-12-20T04:31:28,279 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-12-20T04:31:28,280 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2024-12-20T04:31:28,281 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-12-20T04:31:28,281 warning: no previously-included files matching '*.a' found anywhere in distribution 2024-12-20T04:31:28,282 warning: no previously-included files matching '*.o' found anywhere in distribution 2024-12-20T04:31:28,283 warning: no previously-included files matching 'build/*' found anywhere in distribution 2024-12-20T04:31:28,284 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2024-12-20T04:31:28,284 adding license file 'LICENCE' 2024-12-20T04:31:28,288 writing manifest file '/tmp/pip-pip-egg-info-9ha9tz_h/rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:28,377 Preparing metadata (setup.py): finished with status 'done' 2024-12-20T04:31:28,382 Source in /tmp/pip-wheel-psp6reqk/rsalor_ee413f0e95f94e1ea518cffd7cbbc57e has version 1.0.3, which satisfies requirement rsalor==1.0.3 from https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz 2024-12-20T04:31:28,383 Removed rsalor==1.0.3 from https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-1g7qa9gq' 2024-12-20T04:31:28,391 Created temporary directory: /tmp/pip-unpack-dmj9oux4 2024-12-20T04:31:28,392 Created temporary directory: /tmp/pip-unpack-oj29lfb2 2024-12-20T04:31:28,392 Building wheels for collected packages: rsalor 2024-12-20T04:31:28,396 Created temporary directory: /tmp/pip-wheel-054w3di3 2024-12-20T04:31:28,396 Building wheel for rsalor (setup.py): started 2024-12-20T04:31:28,397 Destination directory: /tmp/pip-wheel-054w3di3 2024-12-20T04:31:28,397 Running command python setup.py bdist_wheel 2024-12-20T04:31:29,700 running bdist_wheel 2024-12-20T04:31:29,870 running build 2024-12-20T04:31:29,870 running build_py 2024-12-20T04:31:29,909 creating build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:29,911 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:29,913 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2024-12-20T04:31:29,916 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:29,918 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:29,920 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:29,922 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2024-12-20T04:31:29,924 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,925 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,927 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,930 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,932 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,934 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2024-12-20T04:31:29,937 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,938 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,940 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,942 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,944 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,946 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2024-12-20T04:31:29,949 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,950 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,952 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,954 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,956 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,959 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,961 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2024-12-20T04:31:29,964 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:29,965 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:29,967 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:29,975 running build_ext 2024-12-20T04:31:30,456 building 'rsalor.weights.lib_computeWeightsBackend' extension 2024-12-20T04:31:30,457 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2024-12-20T04:31:30,459 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp 2024-12-20T04:31:31,682 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2024-12-20T04:31:31,682 rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2024-12-20T04:31:31,682 48 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2024-12-20T04:31:31,683 | ~~^~~~~~~~~~~ 2024-12-20T04:31:32,094 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp 2024-12-20T04:31:33,360 rsalor/weights/msa.cpp: In member function ‘std::vector MSA::computeWeights()’: 2024-12-20T04:31:33,360 rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable] 2024-12-20T04:31:33,360 115 | auto num_threads = this->num_threads; 2024-12-20T04:31:33,360 | ^~~~~~~~~~~ 2024-12-20T04:31:35,404 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -fopenmp -O3 2024-12-20T04:31:35,740 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-20T04:31:35,741 !! 2024-12-20T04:31:35,741 ******************************************************************************** 2024-12-20T04:31:35,741 Please avoid running ``setup.py`` directly. 2024-12-20T04:31:35,741 Instead, use pypa/build, pypa/installer or other 2024-12-20T04:31:35,741 standards-based tools. 2024-12-20T04:31:35,742 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-20T04:31:35,742 ******************************************************************************** 2024-12-20T04:31:35,742 !! 2024-12-20T04:31:35,742 self.initialize_options() 2024-12-20T04:31:35,774 installing to build/bdist.linux-armv7l/wheel 2024-12-20T04:31:35,774 running install 2024-12-20T04:31:35,801 running install_lib 2024-12-20T04:31:35,844 creating build/bdist.linux-armv7l/wheel 2024-12-20T04:31:35,846 creating build/bdist.linux-armv7l/wheel/rsalor 2024-12-20T04:31:35,848 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2024-12-20T04:31:35,849 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:35,851 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:35,853 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2024-12-20T04:31:35,856 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2024-12-20T04:31:35,857 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:35,859 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:35,860 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:35,863 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:35,865 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2024-12-20T04:31:35,866 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2024-12-20T04:31:35,869 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2024-12-20T04:31:35,870 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:35,872 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:35,874 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:35,877 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:35,879 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2024-12-20T04:31:35,882 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2024-12-20T04:31:35,883 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,885 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,887 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,889 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,891 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,894 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2024-12-20T04:31:35,897 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2024-12-20T04:31:35,902 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2024-12-20T04:31:35,904 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:35,906 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:35,909 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2024-12-20T04:31:35,921 running install_egg_info 2024-12-20T04:31:35,980 running egg_info 2024-12-20T04:31:36,017 writing rsalor.egg-info/PKG-INFO 2024-12-20T04:31:36,021 writing dependency_links to rsalor.egg-info/dependency_links.txt 2024-12-20T04:31:36,023 writing requirements to rsalor.egg-info/requires.txt 2024-12-20T04:31:36,025 writing top-level names to rsalor.egg-info/top_level.txt 2024-12-20T04:31:36,069 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:36,074 reading manifest template 'MANIFEST.in' 2024-12-20T04:31:36,075 warning: no files found matching 'pycofitness/plmdca/include/*' 2024-12-20T04:31:36,082 warning: no previously-included files found matching 'fig/*' 2024-12-20T04:31:36,083 warning: no previously-included files found matching 'src/*' 2024-12-20T04:31:36,084 warning: no previously-included files found matching 'tmp/*' 2024-12-20T04:31:36,085 warning: no previously-included files found matching '0_*' 2024-12-20T04:31:36,086 warning: no previously-included files found matching 'conda-env.yml' 2024-12-20T04:31:36,087 warning: no previously-included files found matching 'test_data/*' 2024-12-20T04:31:36,088 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-12-20T04:31:36,089 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2024-12-20T04:31:36,090 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-12-20T04:31:36,091 warning: no previously-included files matching '*.a' found anywhere in distribution 2024-12-20T04:31:36,092 warning: no previously-included files matching '*.o' found anywhere in distribution 2024-12-20T04:31:36,093 warning: no previously-included files matching 'build/*' found anywhere in distribution 2024-12-20T04:31:36,094 adding license file 'LICENCE' 2024-12-20T04:31:36,099 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2024-12-20T04:31:36,101 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.3-py3.9.egg-info 2024-12-20T04:31:36,111 running install_scripts 2024-12-20T04:31:36,167 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.3.dist-info/WHEEL 2024-12-20T04:31:36,170 creating '/tmp/pip-wheel-054w3di3/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-20T04:31:36,172 adding 'rsalor/__init__.py' 2024-12-20T04:31:36,177 adding 'rsalor/msa.py' 2024-12-20T04:31:36,180 adding 'rsalor/rsa/__init__.py' 2024-12-20T04:31:36,181 adding 'rsalor/rsa/rsa_biopython.py' 2024-12-20T04:31:36,183 adding 'rsalor/rsa/rsa_dssp.py' 2024-12-20T04:31:36,186 adding 'rsalor/rsa/rsa_music.py' 2024-12-20T04:31:36,187 adding 'rsalor/rsa/rsa_solver.py' 2024-12-20T04:31:36,189 adding 'rsalor/sequence/__init__.py' 2024-12-20T04:31:36,192 adding 'rsalor/sequence/amino_acid.py' 2024-12-20T04:31:36,194 adding 'rsalor/sequence/fasta_reader.py' 2024-12-20T04:31:36,196 adding 'rsalor/sequence/mutation.py' 2024-12-20T04:31:36,198 adding 'rsalor/sequence/pairwise_alignment.py' 2024-12-20T04:31:36,200 adding 'rsalor/sequence/sequence.py' 2024-12-20T04:31:36,202 adding 'rsalor/structure/__init__.py' 2024-12-20T04:31:36,204 adding 'rsalor/structure/residue.py' 2024-12-20T04:31:36,206 adding 'rsalor/structure/structure.py' 2024-12-20T04:31:36,210 adding 'rsalor/utils/CSV.py' 2024-12-20T04:31:36,211 adding 'rsalor/utils/__init__.py' 2024-12-20T04:31:36,213 adding 'rsalor/utils/ali_to_fasta.py' 2024-12-20T04:31:36,214 adding 'rsalor/utils/logger.py' 2024-12-20T04:31:36,216 adding 'rsalor/utils/utils.py' 2024-12-20T04:31:36,218 adding 'rsalor/weights/__init__.py' 2024-12-20T04:31:36,220 adding 'rsalor/weights/compute_weights.py' 2024-12-20T04:31:36,297 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2024-12-20T04:31:36,303 adding 'rsalor-1.0.3.dist-info/LICENCE' 2024-12-20T04:31:36,304 adding 'rsalor-1.0.3.dist-info/METADATA' 2024-12-20T04:31:36,306 adding 'rsalor-1.0.3.dist-info/WHEEL' 2024-12-20T04:31:36,307 adding 'rsalor-1.0.3.dist-info/top_level.txt' 2024-12-20T04:31:36,308 adding 'rsalor-1.0.3.dist-info/RECORD' 2024-12-20T04:31:36,312 removing build/bdist.linux-armv7l/wheel 2024-12-20T04:31:36,447 Building wheel for rsalor (setup.py): finished with status 'done' 2024-12-20T04:31:36,452 Created wheel for rsalor: filename=rsalor-1.0.3-cp39-cp39-linux_armv7l.whl size=183763 sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 2024-12-20T04:31:36,453 Stored in directory: /tmp/pip-ephem-wheel-cache-jsbvjuz4/wheels/5b/c9/44/b82e5784ae44cd72731c78b3ec3487acd4c0dba18679fd9d78 2024-12-20T04:31:36,464 Successfully built rsalor 2024-12-20T04:31:36,472 Removed build tracker: '/tmp/pip-build-tracker-1g7qa9gq'