2024-12-20T05:37:05,542 Created temporary directory: /tmp/pip-build-tracker-diod_fqe 2024-12-20T05:37:05,544 Initialized build tracking at /tmp/pip-build-tracker-diod_fqe 2024-12-20T05:37:05,544 Created build tracker: /tmp/pip-build-tracker-diod_fqe 2024-12-20T05:37:05,545 Entered build tracker: /tmp/pip-build-tracker-diod_fqe 2024-12-20T05:37:05,546 Created temporary directory: /tmp/pip-wheel-gtipk_if 2024-12-20T05:37:05,549 Created temporary directory: /tmp/pip-ephem-wheel-cache-eco80aip 2024-12-20T05:37:05,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-20T05:37:05,598 2 location(s) to search for versions of codon-bias: 2024-12-20T05:37:05,598 * https://pypi.org/simple/codon-bias/ 2024-12-20T05:37:05,598 * https://www.piwheels.org/simple/codon-bias/ 2024-12-20T05:37:05,599 Fetching project page and analyzing links: https://pypi.org/simple/codon-bias/ 2024-12-20T05:37:05,600 Getting page https://pypi.org/simple/codon-bias/ 2024-12-20T05:37:05,601 Found index url https://pypi.org/simple/ 2024-12-20T05:37:05,821 Fetched page https://pypi.org/simple/codon-bias/ as application/vnd.pypi.simple.v1+json 2024-12-20T05:37:05,824 Found link https://files.pythonhosted.org/packages/17/35/c2e6fcb73d84d1f5035be8092cee3b2af06af723b84352638447529d227c/codon-bias-0.1.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.1.0 2024-12-20T05:37:05,825 Found link https://files.pythonhosted.org/packages/cc/4e/11bcc186f4618fba833af761d7d3e7598b3c57ee4d11f7c733790bb5db20/codon-bias-0.2.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.2.0 2024-12-20T05:37:05,826 Found link https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.0 2024-12-20T05:37:05,827 Found link https://files.pythonhosted.org/packages/03/9f/c0df251e0912595b2d5e55e61832c650c2453f95d1559cb864654e286126/codon-bias-0.3.1.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.1 2024-12-20T05:37:05,828 Found link https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.2 2024-12-20T05:37:05,828 Skipping link: No binaries permitted for codon-bias: https://files.pythonhosted.org/packages/93/54/c8f62181dbbe091c5441fb92e6d1d2000499befd02cf6c8ca278c251b9fc/codon_bias-0.3.2-py3-none-any.whl (from https://pypi.org/simple/codon-bias/) (requires-python:>=3) 2024-12-20T05:37:05,829 Fetching project page and analyzing links: https://www.piwheels.org/simple/codon-bias/ 2024-12-20T05:37:05,830 Getting page https://www.piwheels.org/simple/codon-bias/ 2024-12-20T05:37:05,831 Found index url https://www.piwheels.org/simple/ 2024-12-20T05:37:05,999 Fetched page https://www.piwheels.org/simple/codon-bias/ as text/html 2024-12-20T05:37:06,002 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.1-py3-none-any.whl#sha256=26224a3549ff4812bed0265b7c0f62591b26ef8ff8ebfe7143916ff6f5ecea4c (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2024-12-20T05:37:06,002 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.3.0-py3-none-any.whl#sha256=d3bc123aaf0d19c1e1e0e294b090f33fb6784cdc5e271759162ecd80d8545586 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2024-12-20T05:37:06,003 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.2.0-py3-none-any.whl#sha256=54af1367ee5a968ac294644b098ab9e7b911598789435a083c12187ceeeb410e (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2024-12-20T05:37:06,003 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.1.0-py3-none-any.whl#sha256=45c2aa92ebf3bab8074d6a6e66799cacc106af5c5635b2eb1d6e2369f37a9ed8 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2024-12-20T05:37:06,004 Skipping link: not a file: https://www.piwheels.org/simple/codon-bias/ 2024-12-20T05:37:06,005 Skipping link: not a file: https://pypi.org/simple/codon-bias/ 2024-12-20T05:37:06,024 Given no hashes to check 1 links for project 'codon-bias': discarding no candidates 2024-12-20T05:37:06,026 Collecting codon-bias==0.3.2 2024-12-20T05:37:06,028 Created temporary directory: /tmp/pip-unpack-ie5_nltn 2024-12-20T05:37:06,242 Downloading codon-bias-0.3.2.tar.gz (103 kB) 2024-12-20T05:37:06,372 Added codon-bias==0.3.2 from https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-diod_fqe' 2024-12-20T05:37:06,374 Running setup.py (path:/tmp/pip-wheel-gtipk_if/codon-bias_ed0ba7d97e4043b3a2720d8e37b4c0ad/setup.py) egg_info for package codon-bias 2024-12-20T05:37:06,375 Created temporary directory: /tmp/pip-pip-egg-info-iaa5ek01 2024-12-20T05:37:06,375 Preparing metadata (setup.py): started 2024-12-20T05:37:06,376 Running command python setup.py egg_info 2024-12-20T05:37:06,900 No `name` configuration, performing automatic discovery 2024-12-20T05:37:07,472 running egg_info 2024-12-20T05:37:07,499 creating /tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info 2024-12-20T05:37:07,500 writing /tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/PKG-INFO 2024-12-20T05:37:07,503 writing dependency_links to /tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/dependency_links.txt 2024-12-20T05:37:07,505 writing requirements to /tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/requires.txt 2024-12-20T05:37:07,506 writing top-level names to /tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/top_level.txt 2024-12-20T05:37:07,508 writing manifest file '/tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/SOURCES.txt' 2024-12-20T05:37:07,595 reading manifest file '/tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/SOURCES.txt' 2024-12-20T05:37:07,597 reading manifest template 'MANIFEST.in' 2024-12-20T05:37:07,598 adding license file 'LICENSE' 2024-12-20T05:37:07,601 writing manifest file '/tmp/pip-pip-egg-info-iaa5ek01/codon_bias.egg-info/SOURCES.txt' 2024-12-20T05:37:07,711 Preparing metadata (setup.py): finished with status 'done' 2024-12-20T05:37:07,715 Source in /tmp/pip-wheel-gtipk_if/codon-bias_ed0ba7d97e4043b3a2720d8e37b4c0ad has version 0.3.2, which satisfies requirement codon-bias==0.3.2 from https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz 2024-12-20T05:37:07,716 Removed codon-bias==0.3.2 from https://files.pythonhosted.org/packages/23/89/1e3ebc93d1ce9606385c9ca45a6326a60942e9cd4ccf6e6f8edbeb855b58/codon-bias-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-diod_fqe' 2024-12-20T05:37:07,722 Created temporary directory: /tmp/pip-unpack-onr7786_ 2024-12-20T05:37:07,723 Created temporary directory: /tmp/pip-unpack-z9d42a1f 2024-12-20T05:37:07,724 Building wheels for collected packages: codon-bias 2024-12-20T05:37:07,728 Created temporary directory: /tmp/pip-wheel-x815mqd9 2024-12-20T05:37:07,729 Building wheel for codon-bias (setup.py): started 2024-12-20T05:37:07,730 Destination directory: /tmp/pip-wheel-x815mqd9 2024-12-20T05:37:07,731 Running command python setup.py bdist_wheel 2024-12-20T05:37:08,222 No `name` configuration, performing automatic discovery 2024-12-20T05:37:08,756 running bdist_wheel 2024-12-20T05:37:08,885 running build 2024-12-20T05:37:08,885 running build_py 2024-12-20T05:37:08,914 creating build/lib/codonbias 2024-12-20T05:37:08,917 copying codonbias/optimizers.py -> build/lib/codonbias 2024-12-20T05:37:08,919 copying codonbias/__init__.py -> build/lib/codonbias 2024-12-20T05:37:08,921 copying codonbias/scores.py -> build/lib/codonbias 2024-12-20T05:37:08,924 copying codonbias/pairwise.py -> build/lib/codonbias 2024-12-20T05:37:08,927 copying codonbias/stats.py -> build/lib/codonbias 2024-12-20T05:37:08,929 copying codonbias/random.py -> build/lib/codonbias 2024-12-20T05:37:08,932 copying codonbias/utils.py -> build/lib/codonbias 2024-12-20T05:37:08,934 running egg_info 2024-12-20T05:37:08,960 writing codon_bias.egg-info/PKG-INFO 2024-12-20T05:37:08,963 writing dependency_links to codon_bias.egg-info/dependency_links.txt 2024-12-20T05:37:08,965 writing requirements to codon_bias.egg-info/requires.txt 2024-12-20T05:37:08,966 writing top-level names to codon_bias.egg-info/top_level.txt 2024-12-20T05:37:08,999 reading manifest file 'codon_bias.egg-info/SOURCES.txt' 2024-12-20T05:37:09,002 reading manifest template 'MANIFEST.in' 2024-12-20T05:37:09,004 adding license file 'LICENSE' 2024-12-20T05:37:09,007 writing manifest file 'codon_bias.egg-info/SOURCES.txt' 2024-12-20T05:37:09,010 copying codonbias/genetic_code_ncbi.csv -> build/lib/codonbias 2024-12-20T05:37:09,013 copying codonbias/tAI_svalues_Tuller.csv -> build/lib/codonbias 2024-12-20T05:37:09,015 copying codonbias/tAI_svalues_dosReis.csv -> build/lib/codonbias 2024-12-20T05:37:09,044 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-20T05:37:09,044 !! 2024-12-20T05:37:09,045 ******************************************************************************** 2024-12-20T05:37:09,046 Please avoid running ``setup.py`` directly. 2024-12-20T05:37:09,046 Instead, use pypa/build, pypa/installer or other 2024-12-20T05:37:09,047 standards-based tools. 2024-12-20T05:37:09,048 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-20T05:37:09,048 ******************************************************************************** 2024-12-20T05:37:09,050 !! 2024-12-20T05:37:09,050 self.initialize_options() 2024-12-20T05:37:09,071 installing to build/bdist.linux-armv7l/wheel 2024-12-20T05:37:09,071 running install 2024-12-20T05:37:09,095 running install_lib 2024-12-20T05:37:09,123 creating build/bdist.linux-armv7l/wheel 2024-12-20T05:37:09,125 creating build/bdist.linux-armv7l/wheel/codonbias 2024-12-20T05:37:09,126 copying build/lib/codonbias/genetic_code_ncbi.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,128 copying build/lib/codonbias/optimizers.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,131 copying build/lib/codonbias/__init__.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,132 copying build/lib/codonbias/scores.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,135 copying build/lib/codonbias/pairwise.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,137 copying build/lib/codonbias/tAI_svalues_Tuller.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,139 copying build/lib/codonbias/stats.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,142 copying build/lib/codonbias/random.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,144 copying build/lib/codonbias/tAI_svalues_dosReis.csv -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,146 copying build/lib/codonbias/utils.py -> build/bdist.linux-armv7l/wheel/./codonbias 2024-12-20T05:37:09,148 running install_egg_info 2024-12-20T05:37:09,181 Copying codon_bias.egg-info to build/bdist.linux-armv7l/wheel/./codon_bias-0.3.2-py3.11.egg-info 2024-12-20T05:37:09,191 running install_scripts 2024-12-20T05:37:09,204 creating build/bdist.linux-armv7l/wheel/codon_bias-0.3.2.dist-info/WHEEL 2024-12-20T05:37:09,207 creating '/tmp/pip-wheel-x815mqd9/codon_bias-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-20T05:37:09,210 adding 'codonbias/__init__.py' 2024-12-20T05:37:09,212 adding 'codonbias/genetic_code_ncbi.csv' 2024-12-20T05:37:09,214 adding 'codonbias/optimizers.py' 2024-12-20T05:37:09,215 adding 'codonbias/pairwise.py' 2024-12-20T05:37:09,218 adding 'codonbias/random.py' 2024-12-20T05:37:09,222 adding 'codonbias/scores.py' 2024-12-20T05:37:09,224 adding 'codonbias/stats.py' 2024-12-20T05:37:09,226 adding 'codonbias/tAI_svalues_Tuller.csv' 2024-12-20T05:37:09,227 adding 'codonbias/tAI_svalues_dosReis.csv' 2024-12-20T05:37:09,228 adding 'codonbias/utils.py' 2024-12-20T05:37:09,230 adding 'codon_bias-0.3.2.dist-info/LICENSE' 2024-12-20T05:37:09,231 adding 'codon_bias-0.3.2.dist-info/METADATA' 2024-12-20T05:37:09,232 adding 'codon_bias-0.3.2.dist-info/WHEEL' 2024-12-20T05:37:09,233 adding 'codon_bias-0.3.2.dist-info/top_level.txt' 2024-12-20T05:37:09,233 adding 'codon_bias-0.3.2.dist-info/RECORD' 2024-12-20T05:37:09,235 removing build/bdist.linux-armv7l/wheel 2024-12-20T05:37:09,349 Building wheel for codon-bias (setup.py): finished with status 'done' 2024-12-20T05:37:09,352 Created wheel for codon-bias: filename=codon_bias-0.3.2-py3-none-any.whl size=27844 sha256=7d19f79566e03ef7de880c81eea9659e1ab32de5f7c4cd6a42153627ed4d5c7b 2024-12-20T05:37:09,353 Stored in directory: /tmp/pip-ephem-wheel-cache-eco80aip/wheels/a5/ca/86/07db6029c81146037a4f12ae4412509ed3d2681cd684ae0245 2024-12-20T05:37:09,363 Successfully built codon-bias 2024-12-20T05:37:09,367 Removed build tracker: '/tmp/pip-build-tracker-diod_fqe'