2024-12-31T09:10:27,144 Created temporary directory: /tmp/pip-build-tracker-gt40vhx7 2024-12-31T09:10:27,146 Initialized build tracking at /tmp/pip-build-tracker-gt40vhx7 2024-12-31T09:10:27,147 Created build tracker: /tmp/pip-build-tracker-gt40vhx7 2024-12-31T09:10:27,147 Entered build tracker: /tmp/pip-build-tracker-gt40vhx7 2024-12-31T09:10:27,148 Created temporary directory: /tmp/pip-wheel-2hadhjqk 2024-12-31T09:10:27,152 Created temporary directory: /tmp/pip-ephem-wheel-cache-oxg7l0gf 2024-12-31T09:10:27,203 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-12-31T09:10:27,206 2 location(s) to search for versions of protenix: 2024-12-31T09:10:27,206 * https://pypi.org/simple/protenix/ 2024-12-31T09:10:27,206 * https://www.piwheels.org/simple/protenix/ 2024-12-31T09:10:27,208 Fetching project page and analyzing links: https://pypi.org/simple/protenix/ 2024-12-31T09:10:27,209 Getting page https://pypi.org/simple/protenix/ 2024-12-31T09:10:27,211 Found index url https://pypi.org/simple/ 2024-12-31T09:10:27,438 Fetched page https://pypi.org/simple/protenix/ as application/vnd.pypi.simple.v1+json 2024-12-31T09:10:27,444 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/a8/ea/bbe375d1a89b5e3cbe5e07e56184e29a7b779f964a8ea910337a0746af5e/Protenix-0.0.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) 2024-12-31T09:10:27,444 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/35/f6/105b3517490c13d23880689ef3b4477d072d117ca4cc6f805bad9ee16391/protenix-0.0.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) 2024-12-31T09:10:27,445 Found link https://files.pythonhosted.org/packages/63/d5/22a2098752b2b8c95f2ced18d38918883aa9a5ac8cee9df5174aadfee19c/protenix-0.0.1.tar.gz (from https://pypi.org/simple/protenix/), version: 0.0.1 2024-12-31T09:10:27,446 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/85/33/10bb83edcf222b7cd05cc94d453ac7edfa86f09c7100db8c62fcc894745c/protenix-0.1.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,447 Found link https://files.pythonhosted.org/packages/d5/61/cdea4397a181ca2b108c6df0aa4c30e7a6fc34c5b75ad69557569c44b61d/protenix-0.1.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.0 2024-12-31T09:10:27,448 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/28/00/2206a6a3a02d45eeb6e16c6ffcacff6789f11489238acd07ad5127219741/protenix-0.1.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,449 Found link https://files.pythonhosted.org/packages/2b/7b/20fe2818e890f5d25a892ba31a24b910d0cf34e9f86b990c042c3f91fd05/protenix-0.1.1.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.1 2024-12-31T09:10:27,449 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/f5/3f/993181bd5478dccf62a5265df701cc9762d257ac04ea6aec26f2e0ec6b0e/protenix-0.1.2-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:<3.12,>=3.10) 2024-12-31T09:10:27,450 Found link https://files.pythonhosted.org/packages/18/ff/8a30b1df6d1bc731a8b4075a077421e306d85976cae82e758a5f15cef4fd/protenix-0.1.2.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:<3.12,>=3.10), version: 0.1.2 2024-12-31T09:10:27,451 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/c3/31/3b2b20aafa4471bcda6389257ad5348c7762374fe725b0552f836dc13ef6/protenix-0.1.3-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,452 Found link https://files.pythonhosted.org/packages/2c/1c/0788760bb4cd6bae9edc74ef1341e9cc74ad6190b8b5dbd972a361184b97/protenix-0.1.3.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.1.3 2024-12-31T09:10:27,453 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/09/b7/15a72afe3d229492604e5ca7ebed72cd1402068f2d5518e26ebef3f2bb5c/protenix-0.2.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,454 Found link https://files.pythonhosted.org/packages/0f/17/fdc141be77d735ddf3bfba80a660873fa13732b6c77847434b969aa66f51/protenix-0.2.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.2.0 2024-12-31T09:10:27,455 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/99/56/de0a35a125cc0247a366608c8598bdd949ba6068c02fb8d13e8147f65d9c/protenix-0.3.0-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,456 Found link https://files.pythonhosted.org/packages/b6/96/8d6d036dcaff9c1884fcbaa2c752fed65e24320fab2a0a8b128a615da89d/protenix-0.3.0.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.0 2024-12-31T09:10:27,456 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/bf/6b/1cb9d8eea4be4973f97bd1f138f6da0711fad309b76b5c977b316c6bc511/protenix-0.3.1-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,462 Found link https://files.pythonhosted.org/packages/9a/85/b1ec219c8b8a3ba735742164561a917f53e81f11d2a3a9544a206f9ac21b/protenix-0.3.1.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.1 2024-12-31T09:10:27,462 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/6d/11/4c2946b935b56d995c7418cfc783c16e9e647de72a34380c42e573d4b28d/protenix-0.3.2-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,463 Found link https://files.pythonhosted.org/packages/65/48/25fdef4629cd5ce68c65f733fc49388378cacd3658cd76b5e88893ca5227/protenix-0.3.2.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.2 2024-12-31T09:10:27,464 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/c7/93/f19c14b2b49405f326fab9594ffd7252ef0e231cc348d61b5e406408c8cf/protenix-0.3.3-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,465 Found link https://files.pythonhosted.org/packages/83/67/8697c13e89ed881756f1d188346b4e241decea92545f611778baa9273a49/protenix-0.3.3.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.3 2024-12-31T09:10:27,465 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/49/29/b5b7a2e6e0802ba1d6256d774aafcce43d86773202697a4d1ebb7ff3a95a/protenix-0.3.4-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,466 Found link https://files.pythonhosted.org/packages/67/bf/6ccce5f88c48f27559d138e5b4e65170e318a0d97c803c655ba3734f9efd/protenix-0.3.4.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.4 2024-12-31T09:10:27,467 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/22/4e/6387baad87ace43b71024601db621c8adb12645ee898bfdf653ffe0067d5/protenix-0.3.5-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,468 Found link https://files.pythonhosted.org/packages/8e/75/ba5a8e3b5e13eab23909185b11b044e4e3db04ade55485e9d7fe09b6e95e/protenix-0.3.5.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.5 2024-12-31T09:10:27,469 Skipping link: No binaries permitted for protenix: https://files.pythonhosted.org/packages/13/c0/5653f9f3db2450d9c2508c32bccf1503610ef34da8d8d10921db6a750635/protenix-0.3.6-py3-none-any.whl (from https://pypi.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,470 Found link https://files.pythonhosted.org/packages/02/16/6482a30fa395df9360f808fe44260a9513abff61efdd75f671a7556028eb/protenix-0.3.6.tar.gz (from https://pypi.org/simple/protenix/) (requires-python:>=3.10), version: 0.3.6 2024-12-31T09:10:27,471 Fetching project page and analyzing links: https://www.piwheels.org/simple/protenix/ 2024-12-31T09:10:27,472 Getting page https://www.piwheels.org/simple/protenix/ 2024-12-31T09:10:27,473 Found index url https://www.piwheels.org/simple/ 2024-12-31T09:10:27,633 Fetched page https://www.piwheels.org/simple/protenix/ as text/html 2024-12-31T09:10:27,637 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.5-py3-none-any.whl#sha256=3719630079eefd5a0ef318cdb45dae22c0b16dd3c6b29bbfcd3b175aa939770b (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,638 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.4-py3-none-any.whl#sha256=d375e6e6506082ba1ef1e01d816c701e9287af557cb0852c45aea426702f052f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,638 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.3-py3-none-any.whl#sha256=bce00ef75c8d8f408dca3bd0105c8bc555da5e34c8998748544be1bb5f763c02 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,639 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.2-py3-none-any.whl#sha256=0255f130567cda78b0dd7e9e1efee966d489a4302df91f47c2ce7d7c5f9b3400 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,639 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.1-py3-none-any.whl#sha256=624b9eaf9450baa3748fbe7d038a393ab59d36d7b191a70d676d592c81f46d1f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,639 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.3.0-py3-none-any.whl#sha256=c2af82dfdebc9606f320eb2d0ae308e644cd77922b443dcd59e7f778e756ac45 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,640 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.2.0-py3-none-any.whl#sha256=0de87030b4ba1d9e3c2b67265493001f00eca096d862816f65f818b739c96c6f (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,641 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.3-py3-none-any.whl#sha256=be21c60c572799c5562933a71a3087ae1441533805771913e77578fc6280e314 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,641 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.2-py3-none-any.whl#sha256=10909020be81638dbfe8da0ff0bc107ad732dc3dc8e420d09aa3e346c53ac527 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10,<3.12) 2024-12-31T09:10:27,642 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.1-py3-none-any.whl#sha256=aa7a8c0ad8f38f5430cb145bb56675e2b0deb861589bbb05ec6eb09dd95c5f57 (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,643 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/protenix-0.1.0-py3-none-any.whl#sha256=95dd14c125ff66c76135ed8525ede80d6be803880749ec813036bb317ca23e6e (from https://www.piwheels.org/simple/protenix/) (requires-python:>=3.10) 2024-12-31T09:10:27,643 Skipping link: No binaries permitted for protenix: https://www.piwheels.org/simple/protenix/Protenix-0.0.1-py3-none-any.whl#sha256=5b251c54ef00f26ee302a294be031208ca73350e41e88d05368f4146cdb01794 (from https://www.piwheels.org/simple/protenix/) 2024-12-31T09:10:27,644 Skipping link: not a file: https://www.piwheels.org/simple/protenix/ 2024-12-31T09:10:27,644 Skipping link: not a file: https://pypi.org/simple/protenix/ 2024-12-31T09:10:27,665 Given no hashes to check 1 links for project 'protenix': discarding no candidates 2024-12-31T09:10:27,667 Collecting protenix==0.3.6 2024-12-31T09:10:27,670 Created temporary directory: /tmp/pip-unpack-n91d525c 2024-12-31T09:10:27,886 Downloading protenix-0.3.6.tar.gz (309 kB) 2024-12-31T09:10:28,272 Added protenix==0.3.6 from https://files.pythonhosted.org/packages/02/16/6482a30fa395df9360f808fe44260a9513abff61efdd75f671a7556028eb/protenix-0.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-gt40vhx7' 2024-12-31T09:10:28,274 Running setup.py (path:/tmp/pip-wheel-2hadhjqk/protenix_04be8258fa934c4c8b0c750a38c6c1ff/setup.py) egg_info for package protenix 2024-12-31T09:10:28,275 Created temporary directory: /tmp/pip-pip-egg-info-0bngpzx5 2024-12-31T09:10:28,276 Preparing metadata (setup.py): started 2024-12-31T09:10:28,277 Running command python setup.py egg_info 2024-12-31T09:10:29,358 running egg_info 2024-12-31T09:10:29,385 creating /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info 2024-12-31T09:10:29,386 writing /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/PKG-INFO 2024-12-31T09:10:29,390 writing dependency_links to /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/dependency_links.txt 2024-12-31T09:10:29,391 writing entry points to /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/entry_points.txt 2024-12-31T09:10:29,393 writing requirements to /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/requires.txt 2024-12-31T09:10:29,394 writing top-level names to /tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/top_level.txt 2024-12-31T09:10:29,395 writing manifest file '/tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/SOURCES.txt' 2024-12-31T09:10:29,503 reading manifest file '/tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/SOURCES.txt' 2024-12-31T09:10:29,505 adding license file 'LICENSE' 2024-12-31T09:10:29,510 writing manifest file '/tmp/pip-pip-egg-info-0bngpzx5/protenix.egg-info/SOURCES.txt' 2024-12-31T09:10:29,618 Preparing metadata (setup.py): finished with status 'done' 2024-12-31T09:10:29,623 Source in /tmp/pip-wheel-2hadhjqk/protenix_04be8258fa934c4c8b0c750a38c6c1ff has version 0.3.6, which satisfies requirement protenix==0.3.6 from https://files.pythonhosted.org/packages/02/16/6482a30fa395df9360f808fe44260a9513abff61efdd75f671a7556028eb/protenix-0.3.6.tar.gz 2024-12-31T09:10:29,624 Removed protenix==0.3.6 from https://files.pythonhosted.org/packages/02/16/6482a30fa395df9360f808fe44260a9513abff61efdd75f671a7556028eb/protenix-0.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-gt40vhx7' 2024-12-31T09:10:29,633 Created temporary directory: /tmp/pip-unpack-djx696cl 2024-12-31T09:10:29,634 Created temporary directory: /tmp/pip-unpack-fltx7h6z 2024-12-31T09:10:29,635 Building wheels for collected packages: protenix 2024-12-31T09:10:29,640 Created temporary directory: /tmp/pip-wheel-t10aad5m 2024-12-31T09:10:29,640 Building wheel for protenix (setup.py): started 2024-12-31T09:10:29,642 Destination directory: /tmp/pip-wheel-t10aad5m 2024-12-31T09:10:29,643 Running command python setup.py bdist_wheel 2024-12-31T09:10:30,665 running bdist_wheel 2024-12-31T09:10:30,797 running build 2024-12-31T09:10:30,798 running build_py 2024-12-31T09:10:30,828 creating build/lib/runner 2024-12-31T09:10:30,830 copying runner/batch_inference.py -> build/lib/runner 2024-12-31T09:10:30,833 copying runner/inference.py -> build/lib/runner 2024-12-31T09:10:30,836 copying runner/ema.py -> build/lib/runner 2024-12-31T09:10:30,838 copying runner/msa_search.py -> build/lib/runner 2024-12-31T09:10:30,840 copying runner/train.py -> build/lib/runner 2024-12-31T09:10:30,843 copying runner/dumper.py -> build/lib/runner 2024-12-31T09:10:30,845 copying runner/__init__.py -> build/lib/runner 2024-12-31T09:10:30,848 creating build/lib/configs 2024-12-31T09:10:30,849 copying configs/configs_inference.py -> build/lib/configs 2024-12-31T09:10:30,851 copying configs/configs_base.py -> build/lib/configs 2024-12-31T09:10:30,854 copying configs/configs_data.py -> build/lib/configs 2024-12-31T09:10:30,856 copying configs/__init__.py -> build/lib/configs 2024-12-31T09:10:30,858 creating build/lib/protenix 2024-12-31T09:10:30,859 copying protenix/__init__.py -> build/lib/protenix 2024-12-31T09:10:30,862 creating build/lib/protenix/data 2024-12-31T09:10:30,863 copying protenix/data/utils.py -> build/lib/protenix/data 2024-12-31T09:10:30,866 copying protenix/data/dataset.py -> build/lib/protenix/data 2024-12-31T09:10:30,868 copying protenix/data/ccd.py -> build/lib/protenix/data 2024-12-31T09:10:30,871 copying protenix/data/msa_featurizer.py -> build/lib/protenix/data 2024-12-31T09:10:30,874 copying protenix/data/json_maker.py -> build/lib/protenix/data 2024-12-31T09:10:30,876 copying protenix/data/filter.py -> build/lib/protenix/data 2024-12-31T09:10:30,878 copying protenix/data/msa_utils.py -> build/lib/protenix/data 2024-12-31T09:10:30,881 copying protenix/data/substructure_perms.py -> build/lib/protenix/data 2024-12-31T09:10:30,884 copying protenix/data/json_parser.py -> build/lib/protenix/data 2024-12-31T09:10:30,886 copying protenix/data/tokenizer.py -> build/lib/protenix/data 2024-12-31T09:10:30,888 copying protenix/data/json_to_feature.py -> build/lib/protenix/data 2024-12-31T09:10:30,891 copying protenix/data/data_pipeline.py -> build/lib/protenix/data 2024-12-31T09:10:30,893 copying protenix/data/dataloader.py -> build/lib/protenix/data 2024-12-31T09:10:30,895 copying protenix/data/featurizer.py -> build/lib/protenix/data 2024-12-31T09:10:30,898 copying protenix/data/infer_data_pipeline.py -> build/lib/protenix/data 2024-12-31T09:10:30,900 copying protenix/data/__init__.py -> build/lib/protenix/data 2024-12-31T09:10:30,902 copying protenix/data/constants.py -> build/lib/protenix/data 2024-12-31T09:10:30,905 copying protenix/data/parser.py -> build/lib/protenix/data 2024-12-31T09:10:30,908 creating build/lib/protenix/web_service 2024-12-31T09:10:30,909 copying protenix/web_service/viewer.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,912 copying protenix/web_service/dependency_url.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,914 copying protenix/web_service/colab_request_parser.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,917 copying protenix/web_service/prediction_visualization.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,919 copying protenix/web_service/colab_request_utils.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,922 copying protenix/web_service/__init__.py -> build/lib/protenix/web_service 2024-12-31T09:10:30,924 creating build/lib/protenix/model 2024-12-31T09:10:30,925 copying protenix/model/utils.py -> build/lib/protenix/model 2024-12-31T09:10:30,927 copying protenix/model/sample_confidence.py -> build/lib/protenix/model 2024-12-31T09:10:30,930 copying protenix/model/loss.py -> build/lib/protenix/model 2024-12-31T09:10:30,933 copying protenix/model/generator.py -> build/lib/protenix/model 2024-12-31T09:10:30,936 copying protenix/model/protenix.py -> build/lib/protenix/model 2024-12-31T09:10:30,939 copying protenix/model/__init__.py -> build/lib/protenix/model 2024-12-31T09:10:30,941 creating build/lib/protenix/config 2024-12-31T09:10:30,942 copying protenix/config/config.py -> build/lib/protenix/config 2024-12-31T09:10:30,944 copying protenix/config/extend_types.py -> build/lib/protenix/config 2024-12-31T09:10:30,947 copying protenix/config/__init__.py -> build/lib/protenix/config 2024-12-31T09:10:30,949 creating build/lib/protenix/utils 2024-12-31T09:10:30,950 copying protenix/utils/logger.py -> build/lib/protenix/utils 2024-12-31T09:10:30,952 copying protenix/utils/torch_utils.py -> build/lib/protenix/utils 2024-12-31T09:10:30,954 copying protenix/utils/metrics.py -> build/lib/protenix/utils 2024-12-31T09:10:30,956 copying protenix/utils/geometry.py -> build/lib/protenix/utils 2024-12-31T09:10:30,958 copying protenix/utils/seed.py -> build/lib/protenix/utils 2024-12-31T09:10:30,960 copying protenix/utils/training.py -> build/lib/protenix/utils 2024-12-31T09:10:30,962 copying protenix/utils/lr_scheduler.py -> build/lib/protenix/utils 2024-12-31T09:10:30,965 copying protenix/utils/cropping.py -> build/lib/protenix/utils 2024-12-31T09:10:30,967 copying protenix/utils/file_io.py -> build/lib/protenix/utils 2024-12-31T09:10:30,969 copying protenix/utils/__init__.py -> build/lib/protenix/utils 2024-12-31T09:10:30,971 copying protenix/utils/distributed.py -> build/lib/protenix/utils 2024-12-31T09:10:30,973 copying protenix/utils/scatter_utils.py -> build/lib/protenix/utils 2024-12-31T09:10:30,975 creating build/lib/protenix/openfold_local 2024-12-31T09:10:30,976 copying protenix/openfold_local/__init__.py -> build/lib/protenix/openfold_local 2024-12-31T09:10:30,979 creating build/lib/protenix/metrics 2024-12-31T09:10:30,980 copying protenix/metrics/rmsd.py -> build/lib/protenix/metrics 2024-12-31T09:10:30,982 copying protenix/metrics/clash.py -> build/lib/protenix/metrics 2024-12-31T09:10:30,985 copying protenix/metrics/lddt_metrics.py -> build/lib/protenix/metrics 2024-12-31T09:10:30,987 copying protenix/metrics/__init__.py -> build/lib/protenix/metrics 2024-12-31T09:10:30,989 creating build/lib/protenix/model/modules 2024-12-31T09:10:30,990 copying protenix/model/modules/frames.py -> build/lib/protenix/model/modules 2024-12-31T09:10:30,992 copying protenix/model/modules/transformer.py -> build/lib/protenix/model/modules 2024-12-31T09:10:30,995 copying protenix/model/modules/confidence.py -> build/lib/protenix/model/modules 2024-12-31T09:10:30,997 copying protenix/model/modules/head.py -> build/lib/protenix/model/modules 2024-12-31T09:10:30,999 copying protenix/model/modules/primitives.py -> build/lib/protenix/model/modules 2024-12-31T09:10:31,003 copying protenix/model/modules/embedders.py -> build/lib/protenix/model/modules 2024-12-31T09:10:31,006 copying protenix/model/modules/pairformer.py -> build/lib/protenix/model/modules 2024-12-31T09:10:31,008 copying protenix/model/modules/diffusion.py -> build/lib/protenix/model/modules 2024-12-31T09:10:31,011 copying protenix/model/modules/__init__.py -> build/lib/protenix/model/modules 2024-12-31T09:10:31,013 creating build/lib/protenix/model/layer_norm 2024-12-31T09:10:31,015 copying protenix/model/layer_norm/torch_ext_compile.py -> build/lib/protenix/model/layer_norm 2024-12-31T09:10:31,017 copying protenix/model/layer_norm/layer_norm.py -> build/lib/protenix/model/layer_norm 2024-12-31T09:10:31,019 copying protenix/model/layer_norm/__init__.py -> build/lib/protenix/model/layer_norm 2024-12-31T09:10:31,022 creating build/lib/protenix/utils/permutation 2024-12-31T09:10:31,023 copying protenix/utils/permutation/utils.py -> build/lib/protenix/utils/permutation 2024-12-31T09:10:31,025 copying protenix/utils/permutation/permutation.py -> build/lib/protenix/utils/permutation 2024-12-31T09:10:31,028 copying protenix/utils/permutation/atom_permutation.py -> build/lib/protenix/utils/permutation 2024-12-31T09:10:31,031 copying protenix/utils/permutation/__init__.py -> build/lib/protenix/utils/permutation 2024-12-31T09:10:31,033 creating build/lib/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,034 copying protenix/utils/permutation/chain_permutation/utils.py -> build/lib/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,036 copying protenix/utils/permutation/chain_permutation/pocket_based_permutation.py -> build/lib/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,038 copying protenix/utils/permutation/chain_permutation/heuristic.py -> build/lib/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,041 copying protenix/utils/permutation/chain_permutation/__init__.py -> build/lib/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,044 creating build/lib/protenix/openfold_local/np 2024-12-31T09:10:31,045 copying protenix/openfold_local/np/residue_constants.py -> build/lib/protenix/openfold_local/np 2024-12-31T09:10:31,048 copying protenix/openfold_local/np/__init__.py -> build/lib/protenix/openfold_local/np 2024-12-31T09:10:31,050 creating build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,052 copying protenix/openfold_local/data/data_transforms.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,054 copying protenix/openfold_local/data/mmcif_parsing.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,056 copying protenix/openfold_local/data/errors.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,058 copying protenix/openfold_local/data/msa_identifiers.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,060 copying protenix/openfold_local/data/templates.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,062 copying protenix/openfold_local/data/parsers.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,064 copying protenix/openfold_local/data/msa_pairing.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,067 copying protenix/openfold_local/data/__init__.py -> build/lib/protenix/openfold_local/data 2024-12-31T09:10:31,069 creating build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,070 copying protenix/openfold_local/model/dropout.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,072 copying protenix/openfold_local/model/triangular_multiplicative_update.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,075 copying protenix/openfold_local/model/primitives.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,077 copying protenix/openfold_local/model/outer_product_mean.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,079 copying protenix/openfold_local/model/triangular_attention.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,082 copying protenix/openfold_local/model/__init__.py -> build/lib/protenix/openfold_local/model 2024-12-31T09:10:31,084 creating build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,085 copying protenix/openfold_local/utils/chunk_utils.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,087 copying protenix/openfold_local/utils/feats.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,090 copying protenix/openfold_local/utils/precision_utils.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,091 copying protenix/openfold_local/utils/rigid_utils.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,094 copying protenix/openfold_local/utils/checkpointing.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,096 copying protenix/openfold_local/utils/all_atom_multimer.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,098 copying protenix/openfold_local/utils/tensor_utils.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,100 copying protenix/openfold_local/utils/__init__.py -> build/lib/protenix/openfold_local/utils 2024-12-31T09:10:31,102 creating build/lib/protenix/openfold_local/data/tools 2024-12-31T09:10:31,103 copying protenix/openfold_local/data/tools/utils.py -> build/lib/protenix/openfold_local/data/tools 2024-12-31T09:10:31,105 copying protenix/openfold_local/data/tools/jackhmmer.py -> build/lib/protenix/openfold_local/data/tools 2024-12-31T09:10:31,108 copying protenix/openfold_local/data/tools/__init__.py -> build/lib/protenix/openfold_local/data/tools 2024-12-31T09:10:31,110 creating build/lib/protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,111 copying protenix/openfold_local/utils/kernel/attention_core.py -> build/lib/protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,113 copying protenix/openfold_local/utils/kernel/__init__.py -> build/lib/protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,115 creating build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,116 copying protenix/openfold_local/utils/geometry/utils.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,118 copying protenix/openfold_local/utils/geometry/rigid_matrix_vector.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,120 copying protenix/openfold_local/utils/geometry/quat_rigid.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,122 copying protenix/openfold_local/utils/geometry/test_utils.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,124 copying protenix/openfold_local/utils/geometry/vector.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,126 copying protenix/openfold_local/utils/geometry/__init__.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,128 copying protenix/openfold_local/utils/geometry/rotation_matrix.py -> build/lib/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,130 running egg_info 2024-12-31T09:10:31,160 writing protenix.egg-info/PKG-INFO 2024-12-31T09:10:31,163 writing dependency_links to protenix.egg-info/dependency_links.txt 2024-12-31T09:10:31,165 writing entry points to protenix.egg-info/entry_points.txt 2024-12-31T09:10:31,166 writing requirements to protenix.egg-info/requires.txt 2024-12-31T09:10:31,167 writing top-level names to protenix.egg-info/top_level.txt 2024-12-31T09:10:31,217 reading manifest file 'protenix.egg-info/SOURCES.txt' 2024-12-31T09:10:31,226 adding license file 'LICENSE' 2024-12-31T09:10:31,233 writing manifest file 'protenix.egg-info/SOURCES.txt' 2024-12-31T09:10:31,236 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'protenix.model.layer_norm.kernel' is absent from the `packages` configuration. 2024-12-31T09:10:31,236 !! 2024-12-31T09:10:31,237 ******************************************************************************** 2024-12-31T09:10:31,238 ############################ 2024-12-31T09:10:31,238 # Package would be ignored # 2024-12-31T09:10:31,239 ############################ 2024-12-31T09:10:31,239 Python recognizes 'protenix.model.layer_norm.kernel' as an importable package[^1], 2024-12-31T09:10:31,240 but it is absent from setuptools' `packages` configuration. 2024-12-31T09:10:31,241 This leads to an ambiguous overall configuration. If you want to distribute this 2024-12-31T09:10:31,242 package, please make sure that 'protenix.model.layer_norm.kernel' is explicitly added 2024-12-31T09:10:31,242 to the `packages` configuration field. 2024-12-31T09:10:31,243 Alternatively, you can also rely on setuptools' discovery methods 2024-12-31T09:10:31,244 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-12-31T09:10:31,244 instead of `find_packages(...)`/`find:`). 2024-12-31T09:10:31,245 You can read more about "package discovery" on setuptools documentation page: 2024-12-31T09:10:31,247 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-12-31T09:10:31,248 If you don't want 'protenix.model.layer_norm.kernel' to be distributed and are 2024-12-31T09:10:31,248 already explicitly excluding 'protenix.model.layer_norm.kernel' via 2024-12-31T09:10:31,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-12-31T09:10:31,249 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-12-31T09:10:31,250 combination with a more fine grained `package-data` configuration. 2024-12-31T09:10:31,251 You can read more about "package data files" on setuptools documentation page: 2024-12-31T09:10:31,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-12-31T09:10:31,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-12-31T09:10:31,255 even if it does not contain any `.py` files. 2024-12-31T09:10:31,255 On the other hand, currently there is no concept of package data 2024-12-31T09:10:31,256 directory, all directories are treated like packages. 2024-12-31T09:10:31,256 ******************************************************************************** 2024-12-31T09:10:31,258 !! 2024-12-31T09:10:31,259 check.warn(importable) 2024-12-31T09:10:31,259 creating build/lib/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,260 copying protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu -> build/lib/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,260 copying protenix/model/layer_norm/kernel/type_shim.h -> build/lib/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,261 copying protenix/model/layer_norm/kernel/compat.h -> build/lib/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,261 copying protenix/model/layer_norm/kernel/layer_norm_cuda.cpp -> build/lib/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,301 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-12-31T09:10:31,302 !! 2024-12-31T09:10:31,303 ******************************************************************************** 2024-12-31T09:10:31,303 Please avoid running ``setup.py`` directly. 2024-12-31T09:10:31,304 Instead, use pypa/build, pypa/installer or other 2024-12-31T09:10:31,304 standards-based tools. 2024-12-31T09:10:31,305 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-12-31T09:10:31,305 ******************************************************************************** 2024-12-31T09:10:31,306 !! 2024-12-31T09:10:31,307 self.initialize_options() 2024-12-31T09:10:31,328 installing to build/bdist.linux-armv7l/wheel 2024-12-31T09:10:31,329 running install 2024-12-31T09:10:31,353 running install_lib 2024-12-31T09:10:31,380 creating build/bdist.linux-armv7l/wheel 2024-12-31T09:10:31,382 creating build/bdist.linux-armv7l/wheel/runner 2024-12-31T09:10:31,384 copying build/lib/runner/batch_inference.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,386 copying build/lib/runner/inference.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,388 copying build/lib/runner/ema.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,390 copying build/lib/runner/msa_search.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,392 copying build/lib/runner/train.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,395 copying build/lib/runner/dumper.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,397 copying build/lib/runner/__init__.py -> build/bdist.linux-armv7l/wheel/./runner 2024-12-31T09:10:31,399 creating build/bdist.linux-armv7l/wheel/configs 2024-12-31T09:10:31,400 copying build/lib/configs/configs_inference.py -> build/bdist.linux-armv7l/wheel/./configs 2024-12-31T09:10:31,402 copying build/lib/configs/configs_base.py -> build/bdist.linux-armv7l/wheel/./configs 2024-12-31T09:10:31,405 copying build/lib/configs/configs_data.py -> build/bdist.linux-armv7l/wheel/./configs 2024-12-31T09:10:31,407 copying build/lib/configs/__init__.py -> build/bdist.linux-armv7l/wheel/./configs 2024-12-31T09:10:31,409 creating build/bdist.linux-armv7l/wheel/protenix 2024-12-31T09:10:31,411 creating build/bdist.linux-armv7l/wheel/protenix/data 2024-12-31T09:10:31,412 copying build/lib/protenix/data/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,415 copying build/lib/protenix/data/dataset.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,418 copying build/lib/protenix/data/ccd.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,421 copying build/lib/protenix/data/msa_featurizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,424 copying build/lib/protenix/data/json_maker.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,426 copying build/lib/protenix/data/filter.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,428 copying build/lib/protenix/data/msa_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,431 copying build/lib/protenix/data/substructure_perms.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,433 copying build/lib/protenix/data/json_parser.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,436 copying build/lib/protenix/data/tokenizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,438 copying build/lib/protenix/data/json_to_feature.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,440 copying build/lib/protenix/data/data_pipeline.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,443 copying build/lib/protenix/data/dataloader.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,445 copying build/lib/protenix/data/featurizer.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,448 copying build/lib/protenix/data/infer_data_pipeline.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,450 copying build/lib/protenix/data/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,451 copying build/lib/protenix/data/constants.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,454 copying build/lib/protenix/data/parser.py -> build/bdist.linux-armv7l/wheel/./protenix/data 2024-12-31T09:10:31,458 creating build/bdist.linux-armv7l/wheel/protenix/web_service 2024-12-31T09:10:31,459 copying build/lib/protenix/web_service/viewer.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,462 copying build/lib/protenix/web_service/dependency_url.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,463 copying build/lib/protenix/web_service/colab_request_parser.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,466 copying build/lib/protenix/web_service/prediction_visualization.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,468 copying build/lib/protenix/web_service/colab_request_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,471 copying build/lib/protenix/web_service/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/web_service 2024-12-31T09:10:31,473 creating build/bdist.linux-armv7l/wheel/protenix/model 2024-12-31T09:10:31,474 copying build/lib/protenix/model/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,476 copying build/lib/protenix/model/sample_confidence.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,479 copying build/lib/protenix/model/loss.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,483 creating build/bdist.linux-armv7l/wheel/protenix/model/modules 2024-12-31T09:10:31,484 copying build/lib/protenix/model/modules/frames.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,486 copying build/lib/protenix/model/modules/transformer.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,490 copying build/lib/protenix/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,492 copying build/lib/protenix/model/modules/head.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,494 copying build/lib/protenix/model/modules/primitives.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,497 copying build/lib/protenix/model/modules/embedders.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,499 copying build/lib/protenix/model/modules/pairformer.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,502 copying build/lib/protenix/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,505 copying build/lib/protenix/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model/modules 2024-12-31T09:10:31,507 creating build/bdist.linux-armv7l/wheel/protenix/model/layer_norm 2024-12-31T09:10:31,508 copying build/lib/protenix/model/layer_norm/torch_ext_compile.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2024-12-31T09:10:31,510 copying build/lib/protenix/model/layer_norm/layer_norm.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2024-12-31T09:10:31,513 creating build/bdist.linux-armv7l/wheel/protenix/model/layer_norm/kernel 2024-12-31T09:10:31,514 copying build/lib/protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2024-12-31T09:10:31,517 copying build/lib/protenix/model/layer_norm/kernel/type_shim.h -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2024-12-31T09:10:31,520 copying build/lib/protenix/model/layer_norm/kernel/compat.h -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2024-12-31T09:10:31,522 copying build/lib/protenix/model/layer_norm/kernel/layer_norm_cuda.cpp -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm/kernel 2024-12-31T09:10:31,524 copying build/lib/protenix/model/layer_norm/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model/layer_norm 2024-12-31T09:10:31,526 copying build/lib/protenix/model/generator.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,529 copying build/lib/protenix/model/protenix.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,531 copying build/lib/protenix/model/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/model 2024-12-31T09:10:31,534 creating build/bdist.linux-armv7l/wheel/protenix/config 2024-12-31T09:10:31,535 copying build/lib/protenix/config/config.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2024-12-31T09:10:31,538 copying build/lib/protenix/config/extend_types.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2024-12-31T09:10:31,539 copying build/lib/protenix/config/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/config 2024-12-31T09:10:31,542 creating build/bdist.linux-armv7l/wheel/protenix/utils 2024-12-31T09:10:31,543 copying build/lib/protenix/utils/logger.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,545 copying build/lib/protenix/utils/torch_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,547 copying build/lib/protenix/utils/metrics.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,549 copying build/lib/protenix/utils/geometry.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,551 copying build/lib/protenix/utils/seed.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,553 copying build/lib/protenix/utils/training.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,555 copying build/lib/protenix/utils/lr_scheduler.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,557 copying build/lib/protenix/utils/cropping.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,560 copying build/lib/protenix/utils/file_io.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,562 copying build/lib/protenix/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,564 copying build/lib/protenix/utils/distributed.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,565 copying build/lib/protenix/utils/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils 2024-12-31T09:10:31,568 creating build/bdist.linux-armv7l/wheel/protenix/utils/permutation 2024-12-31T09:10:31,570 copying build/lib/protenix/utils/permutation/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2024-12-31T09:10:31,572 creating build/bdist.linux-armv7l/wheel/protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,574 copying build/lib/protenix/utils/permutation/chain_permutation/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,576 copying build/lib/protenix/utils/permutation/chain_permutation/pocket_based_permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,578 copying build/lib/protenix/utils/permutation/chain_permutation/heuristic.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,580 copying build/lib/protenix/utils/permutation/chain_permutation/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation/chain_permutation 2024-12-31T09:10:31,583 copying build/lib/protenix/utils/permutation/permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2024-12-31T09:10:31,585 copying build/lib/protenix/utils/permutation/atom_permutation.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2024-12-31T09:10:31,588 copying build/lib/protenix/utils/permutation/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/utils/permutation 2024-12-31T09:10:31,590 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local 2024-12-31T09:10:31,592 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/np 2024-12-31T09:10:31,594 copying build/lib/protenix/openfold_local/np/residue_constants.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/np 2024-12-31T09:10:31,597 copying build/lib/protenix/openfold_local/np/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/np 2024-12-31T09:10:31,599 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/data 2024-12-31T09:10:31,600 copying build/lib/protenix/openfold_local/data/data_transforms.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,603 copying build/lib/protenix/openfold_local/data/mmcif_parsing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,605 copying build/lib/protenix/openfold_local/data/errors.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,607 copying build/lib/protenix/openfold_local/data/msa_identifiers.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,609 copying build/lib/protenix/openfold_local/data/templates.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,613 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/data/tools 2024-12-31T09:10:31,614 copying build/lib/protenix/openfold_local/data/tools/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2024-12-31T09:10:31,616 copying build/lib/protenix/openfold_local/data/tools/jackhmmer.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2024-12-31T09:10:31,619 copying build/lib/protenix/openfold_local/data/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data/tools 2024-12-31T09:10:31,621 copying build/lib/protenix/openfold_local/data/parsers.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,625 copying build/lib/protenix/openfold_local/data/msa_pairing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,628 copying build/lib/protenix/openfold_local/data/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/data 2024-12-31T09:10:31,631 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/model 2024-12-31T09:10:31,633 copying build/lib/protenix/openfold_local/model/dropout.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,635 copying build/lib/protenix/openfold_local/model/triangular_multiplicative_update.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,639 copying build/lib/protenix/openfold_local/model/primitives.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,642 copying build/lib/protenix/openfold_local/model/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,645 copying build/lib/protenix/openfold_local/model/triangular_attention.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,648 copying build/lib/protenix/openfold_local/model/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/model 2024-12-31T09:10:31,651 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils 2024-12-31T09:10:31,653 copying build/lib/protenix/openfold_local/utils/chunk_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,656 copying build/lib/protenix/openfold_local/utils/feats.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,659 copying build/lib/protenix/openfold_local/utils/precision_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,662 copying build/lib/protenix/openfold_local/utils/rigid_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,665 copying build/lib/protenix/openfold_local/utils/checkpointing.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,668 copying build/lib/protenix/openfold_local/utils/all_atom_multimer.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,671 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,673 copying build/lib/protenix/openfold_local/utils/kernel/attention_core.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,676 copying build/lib/protenix/openfold_local/utils/kernel/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/kernel 2024-12-31T09:10:31,678 copying build/lib/protenix/openfold_local/utils/tensor_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,680 copying build/lib/protenix/openfold_local/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils 2024-12-31T09:10:31,683 creating build/bdist.linux-armv7l/wheel/protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,685 copying build/lib/protenix/openfold_local/utils/geometry/utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,688 copying build/lib/protenix/openfold_local/utils/geometry/rigid_matrix_vector.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,691 copying build/lib/protenix/openfold_local/utils/geometry/quat_rigid.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,693 copying build/lib/protenix/openfold_local/utils/geometry/test_utils.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,695 copying build/lib/protenix/openfold_local/utils/geometry/vector.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,698 copying build/lib/protenix/openfold_local/utils/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,701 copying build/lib/protenix/openfold_local/utils/geometry/rotation_matrix.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local/utils/geometry 2024-12-31T09:10:31,703 copying build/lib/protenix/openfold_local/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/openfold_local 2024-12-31T09:10:31,706 copying build/lib/protenix/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix 2024-12-31T09:10:31,708 creating build/bdist.linux-armv7l/wheel/protenix/metrics 2024-12-31T09:10:31,710 copying build/lib/protenix/metrics/rmsd.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2024-12-31T09:10:31,713 copying build/lib/protenix/metrics/clash.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2024-12-31T09:10:31,716 copying build/lib/protenix/metrics/lddt_metrics.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2024-12-31T09:10:31,719 copying build/lib/protenix/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./protenix/metrics 2024-12-31T09:10:31,720 running install_data 2024-12-31T09:10:31,749 creating build/bdist.linux-armv7l/wheel/protenix-0.3.6.data/data 2024-12-31T09:10:31,750 warning: install_data: setup script did not provide a directory for 'requirements.txt' -- installing right in 'build/bdist.linux-armv7l/wheel/protenix-0.3.6.data/data' 2024-12-31T09:10:31,751 copying requirements.txt -> build/bdist.linux-armv7l/wheel/protenix-0.3.6.data/data 2024-12-31T09:10:31,752 running install_egg_info 2024-12-31T09:10:31,786 Copying protenix.egg-info to build/bdist.linux-armv7l/wheel/./protenix-0.3.6-py3.11.egg-info 2024-12-31T09:10:31,797 running install_scripts 2024-12-31T09:10:31,816 creating build/bdist.linux-armv7l/wheel/protenix-0.3.6.dist-info/WHEEL 2024-12-31T09:10:31,818 creating '/tmp/pip-wheel-t10aad5m/protenix-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-12-31T09:10:31,820 adding 'configs/__init__.py' 2024-12-31T09:10:31,822 adding 'configs/configs_base.py' 2024-12-31T09:10:31,824 adding 'configs/configs_data.py' 2024-12-31T09:10:31,825 adding 'configs/configs_inference.py' 2024-12-31T09:10:31,827 adding 'protenix/__init__.py' 2024-12-31T09:10:31,828 adding 'protenix/config/__init__.py' 2024-12-31T09:10:31,831 adding 'protenix/config/config.py' 2024-12-31T09:10:31,832 adding 'protenix/config/extend_types.py' 2024-12-31T09:10:31,834 adding 'protenix/data/__init__.py' 2024-12-31T09:10:31,836 adding 'protenix/data/ccd.py' 2024-12-31T09:10:31,840 adding 'protenix/data/constants.py' 2024-12-31T09:10:31,843 adding 'protenix/data/data_pipeline.py' 2024-12-31T09:10:31,845 adding 'protenix/data/dataloader.py' 2024-12-31T09:10:31,850 adding 'protenix/data/dataset.py' 2024-12-31T09:10:31,854 adding 'protenix/data/featurizer.py' 2024-12-31T09:10:31,855 adding 'protenix/data/filter.py' 2024-12-31T09:10:31,857 adding 'protenix/data/infer_data_pipeline.py' 2024-12-31T09:10:31,859 adding 'protenix/data/json_maker.py' 2024-12-31T09:10:31,861 adding 'protenix/data/json_parser.py' 2024-12-31T09:10:31,863 adding 'protenix/data/json_to_feature.py' 2024-12-31T09:10:31,868 adding 'protenix/data/msa_featurizer.py' 2024-12-31T09:10:31,873 adding 'protenix/data/msa_utils.py' 2024-12-31T09:10:31,879 adding 'protenix/data/parser.py' 2024-12-31T09:10:31,881 adding 'protenix/data/substructure_perms.py' 2024-12-31T09:10:31,883 adding 'protenix/data/tokenizer.py' 2024-12-31T09:10:31,886 adding 'protenix/data/utils.py' 2024-12-31T09:10:31,888 adding 'protenix/metrics/__init__.py' 2024-12-31T09:10:31,889 adding 'protenix/metrics/clash.py' 2024-12-31T09:10:31,891 adding 'protenix/metrics/lddt_metrics.py' 2024-12-31T09:10:31,893 adding 'protenix/metrics/rmsd.py' 2024-12-31T09:10:31,895 adding 'protenix/model/__init__.py' 2024-12-31T09:10:31,896 adding 'protenix/model/generator.py' 2024-12-31T09:10:31,903 adding 'protenix/model/loss.py' 2024-12-31T09:10:31,906 adding 'protenix/model/protenix.py' 2024-12-31T09:10:31,909 adding 'protenix/model/sample_confidence.py' 2024-12-31T09:10:31,911 adding 'protenix/model/utils.py' 2024-12-31T09:10:31,913 adding 'protenix/model/layer_norm/__init__.py' 2024-12-31T09:10:31,915 adding 'protenix/model/layer_norm/layer_norm.py' 2024-12-31T09:10:31,916 adding 'protenix/model/layer_norm/torch_ext_compile.py' 2024-12-31T09:10:31,918 adding 'protenix/model/layer_norm/kernel/compat.h' 2024-12-31T09:10:31,919 adding 'protenix/model/layer_norm/kernel/layer_norm_cuda.cpp' 2024-12-31T09:10:31,922 adding 'protenix/model/layer_norm/kernel/layer_norm_cuda_kernel.cu' 2024-12-31T09:10:31,924 adding 'protenix/model/layer_norm/kernel/type_shim.h' 2024-12-31T09:10:31,925 adding 'protenix/model/modules/__init__.py' 2024-12-31T09:10:31,927 adding 'protenix/model/modules/confidence.py' 2024-12-31T09:10:31,930 adding 'protenix/model/modules/diffusion.py' 2024-12-31T09:10:31,932 adding 'protenix/model/modules/embedders.py' 2024-12-31T09:10:31,933 adding 'protenix/model/modules/frames.py' 2024-12-31T09:10:31,935 adding 'protenix/model/modules/head.py' 2024-12-31T09:10:31,937 adding 'protenix/model/modules/pairformer.py' 2024-12-31T09:10:31,941 adding 'protenix/model/modules/primitives.py' 2024-12-31T09:10:31,944 adding 'protenix/model/modules/transformer.py' 2024-12-31T09:10:31,946 adding 'protenix/openfold_local/__init__.py' 2024-12-31T09:10:31,948 adding 'protenix/openfold_local/data/__init__.py' 2024-12-31T09:10:31,949 adding 'protenix/openfold_local/data/data_transforms.py' 2024-12-31T09:10:31,950 adding 'protenix/openfold_local/data/errors.py' 2024-12-31T09:10:31,953 adding 'protenix/openfold_local/data/mmcif_parsing.py' 2024-12-31T09:10:31,954 adding 'protenix/openfold_local/data/msa_identifiers.py' 2024-12-31T09:10:31,957 adding 'protenix/openfold_local/data/msa_pairing.py' 2024-12-31T09:10:31,960 adding 'protenix/openfold_local/data/parsers.py' 2024-12-31T09:10:31,963 adding 'protenix/openfold_local/data/templates.py' 2024-12-31T09:10:31,965 adding 'protenix/openfold_local/data/tools/__init__.py' 2024-12-31T09:10:31,967 adding 'protenix/openfold_local/data/tools/jackhmmer.py' 2024-12-31T09:10:31,968 adding 'protenix/openfold_local/data/tools/utils.py' 2024-12-31T09:10:31,970 adding 'protenix/openfold_local/model/__init__.py' 2024-12-31T09:10:31,971 adding 'protenix/openfold_local/model/dropout.py' 2024-12-31T09:10:31,972 adding 'protenix/openfold_local/model/outer_product_mean.py' 2024-12-31T09:10:31,976 adding 'protenix/openfold_local/model/primitives.py' 2024-12-31T09:10:31,977 adding 'protenix/openfold_local/model/triangular_attention.py' 2024-12-31T09:10:31,980 adding 'protenix/openfold_local/model/triangular_multiplicative_update.py' 2024-12-31T09:10:31,981 adding 'protenix/openfold_local/np/__init__.py' 2024-12-31T09:10:31,986 adding 'protenix/openfold_local/np/residue_constants.py' 2024-12-31T09:10:31,988 adding 'protenix/openfold_local/utils/__init__.py' 2024-12-31T09:10:31,991 adding 'protenix/openfold_local/utils/all_atom_multimer.py' 2024-12-31T09:10:31,992 adding 'protenix/openfold_local/utils/checkpointing.py' 2024-12-31T09:10:31,994 adding 'protenix/openfold_local/utils/chunk_utils.py' 2024-12-31T09:10:31,996 adding 'protenix/openfold_local/utils/feats.py' 2024-12-31T09:10:31,997 adding 'protenix/openfold_local/utils/precision_utils.py' 2024-12-31T09:10:32,002 adding 'protenix/openfold_local/utils/rigid_utils.py' 2024-12-31T09:10:32,003 adding 'protenix/openfold_local/utils/tensor_utils.py' 2024-12-31T09:10:32,006 adding 'protenix/openfold_local/utils/geometry/__init__.py' 2024-12-31T09:10:32,007 adding 'protenix/openfold_local/utils/geometry/quat_rigid.py' 2024-12-31T09:10:32,008 adding 'protenix/openfold_local/utils/geometry/rigid_matrix_vector.py' 2024-12-31T09:10:32,010 adding 'protenix/openfold_local/utils/geometry/rotation_matrix.py' 2024-12-31T09:10:32,011 adding 'protenix/openfold_local/utils/geometry/test_utils.py' 2024-12-31T09:10:32,013 adding 'protenix/openfold_local/utils/geometry/utils.py' 2024-12-31T09:10:32,014 adding 'protenix/openfold_local/utils/geometry/vector.py' 2024-12-31T09:10:32,016 adding 'protenix/openfold_local/utils/kernel/__init__.py' 2024-12-31T09:10:32,017 adding 'protenix/openfold_local/utils/kernel/attention_core.py' 2024-12-31T09:10:32,019 adding 'protenix/utils/__init__.py' 2024-12-31T09:10:32,023 adding 'protenix/utils/cropping.py' 2024-12-31T09:10:32,024 adding 'protenix/utils/distributed.py' 2024-12-31T09:10:32,026 adding 'protenix/utils/file_io.py' 2024-12-31T09:10:32,027 adding 'protenix/utils/geometry.py' 2024-12-31T09:10:32,028 adding 'protenix/utils/logger.py' 2024-12-31T09:10:32,030 adding 'protenix/utils/lr_scheduler.py' 2024-12-31T09:10:32,031 adding 'protenix/utils/metrics.py' 2024-12-31T09:10:32,033 adding 'protenix/utils/scatter_utils.py' 2024-12-31T09:10:32,034 adding 'protenix/utils/seed.py' 2024-12-31T09:10:32,035 adding 'protenix/utils/torch_utils.py' 2024-12-31T09:10:32,037 adding 'protenix/utils/training.py' 2024-12-31T09:10:32,038 adding 'protenix/utils/permutation/__init__.py' 2024-12-31T09:10:32,042 adding 'protenix/utils/permutation/atom_permutation.py' 2024-12-31T09:10:32,045 adding 'protenix/utils/permutation/permutation.py' 2024-12-31T09:10:32,046 adding 'protenix/utils/permutation/utils.py' 2024-12-31T09:10:32,048 adding 'protenix/utils/permutation/chain_permutation/__init__.py' 2024-12-31T09:10:32,052 adding 'protenix/utils/permutation/chain_permutation/heuristic.py' 2024-12-31T09:10:32,054 adding 'protenix/utils/permutation/chain_permutation/pocket_based_permutation.py' 2024-12-31T09:10:32,055 adding 'protenix/utils/permutation/chain_permutation/utils.py' 2024-12-31T09:10:32,057 adding 'protenix/web_service/__init__.py' 2024-12-31T09:10:32,059 adding 'protenix/web_service/colab_request_parser.py' 2024-12-31T09:10:32,061 adding 'protenix/web_service/colab_request_utils.py' 2024-12-31T09:10:32,062 adding 'protenix/web_service/dependency_url.py' 2024-12-31T09:10:32,064 adding 'protenix/web_service/prediction_visualization.py' 2024-12-31T09:10:32,066 adding 'protenix/web_service/viewer.py' 2024-12-31T09:10:32,068 adding 'protenix-0.3.6.data/data/requirements.txt' 2024-12-31T09:10:32,071 adding 'runner/__init__.py' 2024-12-31T09:10:32,073 adding 'runner/batch_inference.py' 2024-12-31T09:10:32,075 adding 'runner/dumper.py' 2024-12-31T09:10:32,076 adding 'runner/ema.py' 2024-12-31T09:10:32,078 adding 'runner/inference.py' 2024-12-31T09:10:32,080 adding 'runner/msa_search.py' 2024-12-31T09:10:32,083 adding 'runner/train.py' 2024-12-31T09:10:32,085 adding 'protenix-0.3.6.dist-info/LICENSE' 2024-12-31T09:10:32,086 adding 'protenix-0.3.6.dist-info/METADATA' 2024-12-31T09:10:32,087 adding 'protenix-0.3.6.dist-info/WHEEL' 2024-12-31T09:10:32,088 adding 'protenix-0.3.6.dist-info/entry_points.txt' 2024-12-31T09:10:32,088 adding 'protenix-0.3.6.dist-info/top_level.txt' 2024-12-31T09:10:32,091 adding 'protenix-0.3.6.dist-info/RECORD' 2024-12-31T09:10:32,098 removing build/bdist.linux-armv7l/wheel 2024-12-31T09:10:32,243 Building wheel for protenix (setup.py): finished with status 'done' 2024-12-31T09:10:32,250 Created wheel for protenix: filename=protenix-0.3.6-py3-none-any.whl size=383969 sha256=a740708421da6bea03c22fc527e96ec0ce27329a9cfb8adb213d0ad1ec66d031 2024-12-31T09:10:32,251 Stored in directory: /tmp/pip-ephem-wheel-cache-oxg7l0gf/wheels/91/27/1b/5b66eb80a907ae79aebe05e39a8d1d245a0b346e902ea917e8 2024-12-31T09:10:32,265 Successfully built protenix 2024-12-31T09:10:32,285 Removed build tracker: '/tmp/pip-build-tracker-gt40vhx7'