2025-01-02T17:09:03,215 Created temporary directory: /tmp/pip-build-tracker-ojuqg2zy 2025-01-02T17:09:03,217 Initialized build tracking at /tmp/pip-build-tracker-ojuqg2zy 2025-01-02T17:09:03,218 Created build tracker: /tmp/pip-build-tracker-ojuqg2zy 2025-01-02T17:09:03,218 Entered build tracker: /tmp/pip-build-tracker-ojuqg2zy 2025-01-02T17:09:03,219 Created temporary directory: /tmp/pip-wheel-opmu6o4h 2025-01-02T17:09:03,223 Created temporary directory: /tmp/pip-ephem-wheel-cache-toy0qp1l 2025-01-02T17:09:03,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-02T17:09:03,286 2 location(s) to search for versions of pybedtools: 2025-01-02T17:09:03,286 * https://pypi.org/simple/pybedtools/ 2025-01-02T17:09:03,286 * https://www.piwheels.org/simple/pybedtools/ 2025-01-02T17:09:03,287 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2025-01-02T17:09:03,288 Getting page https://pypi.org/simple/pybedtools/ 2025-01-02T17:09:03,289 Found index url https://pypi.org/simple/ 2025-01-02T17:09:03,513 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2025-01-02T17:09:03,519 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2025-01-02T17:09:03,520 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2025-01-02T17:09:03,521 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2025-01-02T17:09:03,521 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2025-01-02T17:09:03,522 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2025-01-02T17:09:03,523 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2025-01-02T17:09:03,523 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2025-01-02T17:09:03,524 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2025-01-02T17:09:03,525 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2025-01-02T17:09:03,526 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2025-01-02T17:09:03,526 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2025-01-02T17:09:03,527 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2025-01-02T17:09:03,528 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2025-01-02T17:09:03,529 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2025-01-02T17:09:03,530 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2025-01-02T17:09:03,530 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2025-01-02T17:09:03,531 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2025-01-02T17:09:03,531 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2025-01-02T17:09:03,532 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2025-01-02T17:09:03,532 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2025-01-02T17:09:03,533 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2025-01-02T17:09:03,533 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2025-01-02T17:09:03,534 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2025-01-02T17:09:03,535 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2025-01-02T17:09:03,535 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2025-01-02T17:09:03,536 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2025-01-02T17:09:03,537 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2025-01-02T17:09:03,537 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2025-01-02T17:09:03,538 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2025-01-02T17:09:03,539 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2025-01-02T17:09:03,539 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2025-01-02T17:09:03,540 Found link https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.11.0 2025-01-02T17:09:03,541 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2025-01-02T17:09:03,542 Getting page https://www.piwheels.org/simple/pybedtools/ 2025-01-02T17:09:03,543 Found index url https://www.piwheels.org/simple/ 2025-01-02T17:09:03,724 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2025-01-02T17:09:03,744 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.10.0-cp311-cp311-linux_armv6l.whl#sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 (from https://www.piwheels.org/simple/pybedtools/) 2025-01-02T17:09:03,746 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2025-01-02T17:09:03,788 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2025-01-02T17:09:03,789 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2025-01-02T17:09:03,789 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2025-01-02T17:09:03,811 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2025-01-02T17:09:03,813 Collecting pybedtools==0.11.0 2025-01-02T17:09:03,816 Created temporary directory: /tmp/pip-unpack-y6h03bww 2025-01-02T17:09:04,034 Downloading pybedtools-0.11.0.tar.gz (12.5 MB) 2025-01-02T17:09:06,937 Added pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-ojuqg2zy' 2025-01-02T17:09:06,940 Running setup.py (path:/tmp/pip-wheel-opmu6o4h/pybedtools_84a3cea4aeed4a42bfe6839f18183d0e/setup.py) egg_info for package pybedtools 2025-01-02T17:09:06,941 Created temporary directory: /tmp/pip-pip-egg-info-dwfmwn4y 2025-01-02T17:09:06,941 Preparing metadata (setup.py): started 2025-01-02T17:09:06,942 Running command python setup.py egg_info 2025-01-02T17:09:07,630 /tmp/pip-wheel-opmu6o4h/pybedtools_84a3cea4aeed4a42bfe6839f18183d0e/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2025-01-02T17:09:07,630 import pkg_resources 2025-01-02T17:09:07,946 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'language_level' 2025-01-02T17:09:07,947 warnings.warn(msg) 2025-01-02T17:09:08,122 running egg_info 2025-01-02T17:09:08,148 creating /tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info 2025-01-02T17:09:08,149 writing /tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/PKG-INFO 2025-01-02T17:09:08,153 writing dependency_links to /tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/dependency_links.txt 2025-01-02T17:09:08,155 writing requirements to /tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/requires.txt 2025-01-02T17:09:08,156 writing top-level names to /tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/top_level.txt 2025-01-02T17:09:08,157 writing manifest file '/tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:08,233 reading manifest file '/tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:08,235 adding license file 'LICENSE.txt' 2025-01-02T17:09:08,241 writing manifest file '/tmp/pip-pip-egg-info-dwfmwn4y/pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:08,356 Preparing metadata (setup.py): finished with status 'done' 2025-01-02T17:09:08,359 Source in /tmp/pip-wheel-opmu6o4h/pybedtools_84a3cea4aeed4a42bfe6839f18183d0e has version 0.11.0, which satisfies requirement pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz 2025-01-02T17:09:08,360 Removed pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-ojuqg2zy' 2025-01-02T17:09:08,365 Created temporary directory: /tmp/pip-unpack-icihohin 2025-01-02T17:09:08,366 Created temporary directory: /tmp/pip-unpack-kxm7ezc4 2025-01-02T17:09:08,367 Building wheels for collected packages: pybedtools 2025-01-02T17:09:08,370 Created temporary directory: /tmp/pip-wheel-otre4neg 2025-01-02T17:09:08,371 Building wheel for pybedtools (setup.py): started 2025-01-02T17:09:08,372 Destination directory: /tmp/pip-wheel-otre4neg 2025-01-02T17:09:08,373 Running command python setup.py bdist_wheel 2025-01-02T17:09:09,030 /tmp/pip-wheel-opmu6o4h/pybedtools_84a3cea4aeed4a42bfe6839f18183d0e/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2025-01-02T17:09:09,031 import pkg_resources 2025-01-02T17:09:09,333 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'language_level' 2025-01-02T17:09:09,333 warnings.warn(msg) 2025-01-02T17:09:09,459 running bdist_wheel 2025-01-02T17:09:09,510 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2025-01-02T17:09:09,512 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:111: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-01-02T17:09:09,513 !! 2025-01-02T17:09:09,514 ******************************************************************************** 2025-01-02T17:09:09,514 With Python 2.7 end-of-life, support for building universal wheels 2025-01-02T17:09:09,515 (i.e., wheels that support both Python 2 and Python 3) 2025-01-02T17:09:09,516 is being obviated. 2025-01-02T17:09:09,517 Please discontinue using this option, or if you still need it, 2025-01-02T17:09:09,517 file an issue with pypa/setuptools describing your use case. 2025-01-02T17:09:09,518 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-01-02T17:09:09,519 or your builds will no longer be supported. 2025-01-02T17:09:09,520 ******************************************************************************** 2025-01-02T17:09:09,521 !! 2025-01-02T17:09:09,521 self.finalize_options() 2025-01-02T17:09:09,545 running build 2025-01-02T17:09:09,545 running build_py 2025-01-02T17:09:09,576 creating build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,579 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,581 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,584 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,586 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,588 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,592 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,594 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,600 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,602 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,604 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,606 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,609 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,610 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,613 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,614 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,617 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,618 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,620 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,623 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,625 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,627 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,630 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,632 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,634 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,637 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2025-01-02T17:09:09,639 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,640 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,643 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,645 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,647 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,649 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,651 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,654 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2025-01-02T17:09:09,657 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,658 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,659 running egg_info 2025-01-02T17:09:09,686 creating pybedtools.egg-info 2025-01-02T17:09:09,687 writing pybedtools.egg-info/PKG-INFO 2025-01-02T17:09:09,691 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2025-01-02T17:09:09,694 writing requirements to pybedtools.egg-info/requires.txt 2025-01-02T17:09:09,695 writing top-level names to pybedtools.egg-info/top_level.txt 2025-01-02T17:09:09,698 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:09,742 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:09,743 adding license file 'LICENSE.txt' 2025-01-02T17:09:09,749 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T17:09:09,752 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2025-01-02T17:09:09,753 !! 2025-01-02T17:09:09,754 ******************************************************************************** 2025-01-02T17:09:09,754 ############################ 2025-01-02T17:09:09,755 # Package would be ignored # 2025-01-02T17:09:09,755 ############################ 2025-01-02T17:09:09,756 Python recognizes 'pybedtools.include' as an importable package[^1], 2025-01-02T17:09:09,757 but it is absent from setuptools' `packages` configuration. 2025-01-02T17:09:09,758 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-02T17:09:09,758 package, please make sure that 'pybedtools.include' is explicitly added 2025-01-02T17:09:09,759 to the `packages` configuration field. 2025-01-02T17:09:09,762 Alternatively, you can also rely on setuptools' discovery methods 2025-01-02T17:09:09,762 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-02T17:09:09,763 instead of `find_packages(...)`/`find:`). 2025-01-02T17:09:09,763 You can read more about "package discovery" on setuptools documentation page: 2025-01-02T17:09:09,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-02T17:09:09,766 If you don't want 'pybedtools.include' to be distributed and are 2025-01-02T17:09:09,766 already explicitly excluding 'pybedtools.include' via 2025-01-02T17:09:09,767 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-02T17:09:09,767 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-02T17:09:09,768 combination with a more fine grained `package-data` configuration. 2025-01-02T17:09:09,768 You can read more about "package data files" on setuptools documentation page: 2025-01-02T17:09:09,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-02T17:09:09,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-02T17:09:09,771 even if it does not contain any `.py` files. 2025-01-02T17:09:09,772 On the other hand, currently there is no concept of package data 2025-01-02T17:09:09,773 directory, all directories are treated like packages. 2025-01-02T17:09:09,773 ******************************************************************************** 2025-01-02T17:09:09,774 !! 2025-01-02T17:09:09,775 check.warn(importable) 2025-01-02T17:09:09,775 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,776 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,797 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,799 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,803 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,812 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:09,815 creating build/lib.linux-armv7l-cpython-311/pybedtools/include 2025-01-02T17:09:09,816 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2025-01-02T17:09:09,819 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2025-01-02T17:09:09,822 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2025-01-02T17:09:09,825 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,827 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,829 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,832 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,835 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,839 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,841 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,843 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,845 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,847 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,850 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,852 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,854 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,858 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,862 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,864 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,866 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,868 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,870 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,902 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,904 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,907 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,909 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,911 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,914 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,917 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,921 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,923 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,926 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,929 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,933 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,936 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,938 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:09,943 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,070 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,073 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,078 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,080 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,083 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,086 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,088 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,097 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,101 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,103 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,106 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,108 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,117 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,121 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,124 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,126 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,129 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,134 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,137 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,139 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,190 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,192 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,195 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,198 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,200 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,202 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,205 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,207 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,218 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,225 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,229 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,233 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,235 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,238 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,241 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,243 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,248 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,251 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,258 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,266 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,270 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,273 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,281 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,288 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,294 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,300 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,302 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,304 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,306 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,308 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,310 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,312 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,315 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,317 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,319 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,333 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,346 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,348 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,351 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,357 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,360 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,363 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,369 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,372 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,375 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,379 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,382 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,385 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,389 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,392 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,396 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,399 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,402 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,414 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,417 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,420 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,423 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,433 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,437 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,440 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,443 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,446 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,450 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,453 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,458 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,462 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,466 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,469 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,614 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,616 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,619 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,621 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,624 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,627 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,629 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,631 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,633 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,635 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,638 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,640 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,643 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,681 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,721 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2025-01-02T17:09:10,726 running build_ext 2025-01-02T17:09:10,732 building 'pybedtools.cbedtools' extension 2025-01-02T17:09:10,733 creating build/temp.linux-armv7l-cpython-311/pybedtools 2025-01-02T17:09:10,735 creating build/temp.linux-armv7l-cpython-311/pybedtools/include 2025-01-02T17:09:10,736 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2025-01-02T17:09:37,494 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2025-01-02T17:09:45,764 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2025-01-02T17:09:47,462 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2025-01-02T17:09:49,249 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so 2025-01-02T17:09:49,629 building 'pybedtools.featurefuncs' extension 2025-01-02T17:09:49,630 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o 2025-01-02T17:10:01,997 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2025-01-02T17:10:10,236 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2025-01-02T17:10:11,931 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2025-01-02T17:10:13,722 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so 2025-01-02T17:10:14,082 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-02T17:10:14,083 !! 2025-01-02T17:10:14,084 ******************************************************************************** 2025-01-02T17:10:14,084 Please avoid running ``setup.py`` directly. 2025-01-02T17:10:14,085 Instead, use pypa/build, pypa/installer or other 2025-01-02T17:10:14,085 standards-based tools. 2025-01-02T17:10:14,086 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-02T17:10:14,087 ******************************************************************************** 2025-01-02T17:10:14,088 !! 2025-01-02T17:10:14,088 self.initialize_options() 2025-01-02T17:10:14,110 installing to build/bdist.linux-armv7l/wheel 2025-01-02T17:10:14,110 running install 2025-01-02T17:10:14,135 running install_lib 2025-01-02T17:10:14,162 creating build/bdist.linux-armv7l/wheel 2025-01-02T17:10:14,165 creating build/bdist.linux-armv7l/wheel/pybedtools 2025-01-02T17:10:14,166 copying build/lib.linux-armv7l-cpython-311/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,169 copying build/lib.linux-armv7l-cpython-311/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,171 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2025-01-02T17:10:14,173 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,175 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,177 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,182 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2025-01-02T17:10:14,183 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,185 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,187 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,189 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,191 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,195 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,197 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,199 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,200 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,202 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,204 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,206 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,207 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,211 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,214 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,216 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,218 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,219 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,221 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,251 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,253 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,255 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,257 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,258 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,261 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,263 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,266 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,269 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,271 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,273 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,276 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,278 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,280 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,285 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,423 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,425 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,430 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,432 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,435 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,437 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,439 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,450 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,453 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,455 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,458 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,461 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,471 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,476 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,478 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,481 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,483 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,488 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,490 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,492 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,533 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,535 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,537 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,540 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,541 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,543 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,545 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,547 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,552 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,554 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,556 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,558 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,560 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,562 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,564 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T17:10:14,566 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,567 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,569 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,573 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,574 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,576 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,579 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,581 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,583 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,585 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T17:10:14,587 copying build/lib.linux-armv7l-cpython-311/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,589 copying build/lib.linux-armv7l-cpython-311/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,592 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2025-01-02T17:10:14,593 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T17:10:14,595 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T17:10:14,598 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T17:10:14,601 copying build/lib.linux-armv7l-cpython-311/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,602 copying build/lib.linux-armv7l-cpython-311/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,608 copying build/lib.linux-armv7l-cpython-311/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,609 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,628 copying build/lib.linux-armv7l-cpython-311/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,640 copying build/lib.linux-armv7l-cpython-311/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,642 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,675 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,677 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,679 copying build/lib.linux-armv7l-cpython-311/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,682 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2025-01-02T17:10:14,683 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,685 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,687 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,689 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,691 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,693 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,696 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T17:10:14,698 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,701 copying build/lib.linux-armv7l-cpython-311/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,703 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,740 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,756 copying build/lib.linux-armv7l-cpython-311/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T17:10:14,758 running install_egg_info 2025-01-02T17:10:14,795 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/./pybedtools-0.11.0-py3.11.egg-info 2025-01-02T17:10:14,807 running install_scripts 2025-01-02T17:10:14,864 creating build/bdist.linux-armv7l/wheel/pybedtools-0.11.0.dist-info/WHEEL 2025-01-02T17:10:14,867 creating '/tmp/pip-wheel-otre4neg/pybedtools-0.11.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-02T17:10:14,871 adding 'pybedtools/_Window.pyx' 2025-01-02T17:10:14,873 adding 'pybedtools/__init__.py' 2025-01-02T17:10:14,891 adding 'pybedtools/bedtool.py' 2025-01-02T17:10:14,963 adding 'pybedtools/cbedtools.cpp' 2025-01-02T17:10:15,440 adding 'pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so' 2025-01-02T17:10:15,456 adding 'pybedtools/cbedtools.pxd' 2025-01-02T17:10:15,460 adding 'pybedtools/cbedtools.pyx' 2025-01-02T17:10:15,496 adding 'pybedtools/featurefuncs.cpp' 2025-01-02T17:10:15,773 adding 'pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so' 2025-01-02T17:10:15,784 adding 'pybedtools/featurefuncs.pyx' 2025-01-02T17:10:15,785 adding 'pybedtools/filenames.py' 2025-01-02T17:10:15,794 adding 'pybedtools/genome_registry.py' 2025-01-02T17:10:15,798 adding 'pybedtools/helpers.py' 2025-01-02T17:10:15,799 adding 'pybedtools/logger.py' 2025-01-02T17:10:15,800 adding 'pybedtools/parallel.py' 2025-01-02T17:10:15,802 adding 'pybedtools/paths.py' 2025-01-02T17:10:15,803 adding 'pybedtools/settings.py' 2025-01-02T17:10:15,804 adding 'pybedtools/stats.py' 2025-01-02T17:10:15,814 adding 'pybedtools/version.py' 2025-01-02T17:10:15,816 adding 'pybedtools/contrib/__init__.py' 2025-01-02T17:10:15,817 adding 'pybedtools/contrib/bigbed.py' 2025-01-02T17:10:15,819 adding 'pybedtools/contrib/bigwig.py' 2025-01-02T17:10:15,820 adding 'pybedtools/contrib/intersection_matrix.py' 2025-01-02T17:10:15,823 adding 'pybedtools/contrib/long_range_interaction.py' 2025-01-02T17:10:15,826 adding 'pybedtools/contrib/plotting.py' 2025-01-02T17:10:15,828 adding 'pybedtools/contrib/venn_maker.py' 2025-01-02T17:10:15,830 adding 'pybedtools/include/bedFile.cpp' 2025-01-02T17:10:15,832 adding 'pybedtools/include/fileType.cpp' 2025-01-02T17:10:15,834 adding 'pybedtools/include/gzstream.cpp' 2025-01-02T17:10:15,835 adding 'pybedtools/test/__init__.py' 2025-01-02T17:10:15,837 adding 'pybedtools/test/genomepy_integration.py' 2025-01-02T17:10:15,838 adding 'pybedtools/test/regression_tests.py' 2025-01-02T17:10:15,844 adding 'pybedtools/test/test_1.py' 2025-01-02T17:10:15,846 adding 'pybedtools/test/test_cbedtools.py' 2025-01-02T17:10:15,848 adding 'pybedtools/test/test_contrib.py' 2025-01-02T17:10:15,849 adding 'pybedtools/test/test_gzip_support.py' 2025-01-02T17:10:15,851 adding 'pybedtools/test/test_helpers.py' 2025-01-02T17:10:15,854 adding 'pybedtools/test/test_issues.py' 2025-01-02T17:10:15,856 adding 'pybedtools/test/test_iter.py' 2025-01-02T17:10:15,857 adding 'pybedtools/test/test_len_leak.py' 2025-01-02T17:10:15,858 adding 'pybedtools/test/test_pathlib.py' 2025-01-02T17:10:15,860 adding 'pybedtools/test/tfuncs.py' 2025-01-02T17:10:15,862 adding 'pybedtools/test/data/1000genomes-example.vcf' 2025-01-02T17:10:15,863 adding 'pybedtools/test/data/164.gtf' 2025-01-02T17:10:15,876 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2025-01-02T17:10:15,889 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2025-01-02T17:10:15,899 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2025-01-02T17:10:15,912 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2025-01-02T17:10:15,934 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2025-01-02T17:10:15,957 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2025-01-02T17:10:15,973 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2025-01-02T17:10:15,988 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2025-01-02T17:10:15,990 adding 'pybedtools/test/data/__init__.py' 2025-01-02T17:10:15,991 adding 'pybedtools/test/data/a.bed' 2025-01-02T17:10:15,992 adding 'pybedtools/test/data/a.igv_script' 2025-01-02T17:10:15,993 adding 'pybedtools/test/data/a.links.html' 2025-01-02T17:10:15,994 adding 'pybedtools/test/data/b.bed' 2025-01-02T17:10:15,996 adding 'pybedtools/test/data/bedpe.bed' 2025-01-02T17:10:15,997 adding 'pybedtools/test/data/bedpe2.bed' 2025-01-02T17:10:15,998 adding 'pybedtools/test/data/c.gff' 2025-01-02T17:10:15,999 adding 'pybedtools/test/data/d.gff' 2025-01-02T17:10:16,000 adding 'pybedtools/test/data/democonfig.yaml' 2025-01-02T17:10:16,049 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2025-01-02T17:10:16,101 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2025-01-02T17:10:16,105 adding 'pybedtools/test/data/example.narrowPeak' 2025-01-02T17:10:16,106 adding 'pybedtools/test/data/exons.gff' 2025-01-02T17:10:16,107 adding 'pybedtools/test/data/expand_test.bed' 2025-01-02T17:10:16,108 adding 'pybedtools/test/data/gdc.1.100.bam' 2025-01-02T17:10:16,110 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2025-01-02T17:10:16,111 adding 'pybedtools/test/data/gdc.50.200.bam' 2025-01-02T17:10:16,112 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2025-01-02T17:10:16,113 adding 'pybedtools/test/data/gdc.bam' 2025-01-02T17:10:16,114 adding 'pybedtools/test/data/gdc.bed' 2025-01-02T17:10:16,116 adding 'pybedtools/test/data/gdc.cram' 2025-01-02T17:10:16,117 adding 'pybedtools/test/data/gdc.gff' 2025-01-02T17:10:16,119 adding 'pybedtools/test/data/gdc.gff.gz' 2025-01-02T17:10:16,120 adding 'pybedtools/test/data/gdc.othersort.bam' 2025-01-02T17:10:16,122 adding 'pybedtools/test/data/gdc.sorted.bam' 2025-01-02T17:10:16,123 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2025-01-02T17:10:16,124 adding 'pybedtools/test/data/genome.fa' 2025-01-02T17:10:16,147 adding 'pybedtools/test/data/hg19.gff' 2025-01-02T17:10:16,150 adding 'pybedtools/test/data/hg38-base.bed' 2025-01-02T17:10:16,151 adding 'pybedtools/test/data/hg38-problem.bed' 2025-01-02T17:10:16,152 adding 'pybedtools/test/data/issue319.bed' 2025-01-02T17:10:16,162 adding 'pybedtools/test/data/issue319.out.bed' 2025-01-02T17:10:16,167 adding 'pybedtools/test/data/issue319.vcf.gz' 2025-01-02T17:10:16,168 adding 'pybedtools/test/data/issue_121.bam' 2025-01-02T17:10:16,169 adding 'pybedtools/test/data/m1.bed' 2025-01-02T17:10:16,170 adding 'pybedtools/test/data/mm9.bed12' 2025-01-02T17:10:16,171 adding 'pybedtools/test/data/multibamcov_test.bed' 2025-01-02T17:10:16,173 adding 'pybedtools/test/data/reads.bam' 2025-01-02T17:10:16,179 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2025-01-02T17:10:16,181 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2025-01-02T17:10:16,182 adding 'pybedtools/test/data/small.bam' 2025-01-02T17:10:16,183 adding 'pybedtools/test/data/small.fastq' 2025-01-02T17:10:17,149 adding 'pybedtools/test/data/snps.bed.gz' 2025-01-02T17:10:17,203 adding 'pybedtools/test/data/tag_test1.bed' 2025-01-02T17:10:17,204 adding 'pybedtools/test/data/tag_test2.bed' 2025-01-02T17:10:17,206 adding 'pybedtools/test/data/test.fa' 2025-01-02T17:10:17,207 adding 'pybedtools/test/data/test.fa.fai' 2025-01-02T17:10:17,208 adding 'pybedtools/test/data/test_bedpe.bed' 2025-01-02T17:10:17,209 adding 'pybedtools/test/data/test_peaks.bed' 2025-01-02T17:10:17,210 adding 'pybedtools/test/data/test_tsses.bed' 2025-01-02T17:10:17,212 adding 'pybedtools/test/data/v.vcf' 2025-01-02T17:10:17,213 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2025-01-02T17:10:17,214 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2025-01-02T17:10:17,216 adding 'pybedtools/test/data/venn.b.bed' 2025-01-02T17:10:17,218 adding 'pybedtools/test/data/venn.c.bed' 2025-01-02T17:10:17,439 adding 'pybedtools/test/data/x.bam' 2025-01-02T17:10:17,784 adding 'pybedtools/test/data/x.bed' 2025-01-02T17:10:17,801 adding 'pybedtools/test/data/y.bam' 2025-01-02T17:10:17,803 adding 'pybedtools-0.11.0.dist-info/LICENSE.txt' 2025-01-02T17:10:17,805 adding 'pybedtools-0.11.0.dist-info/METADATA' 2025-01-02T17:10:17,806 adding 'pybedtools-0.11.0.dist-info/WHEEL' 2025-01-02T17:10:17,806 adding 'pybedtools-0.11.0.dist-info/top_level.txt' 2025-01-02T17:10:17,809 adding 'pybedtools-0.11.0.dist-info/RECORD' 2025-01-02T17:10:17,945 removing build/bdist.linux-armv7l/wheel 2025-01-02T17:10:18,097 Building wheel for pybedtools (setup.py): finished with status 'done' 2025-01-02T17:10:18,237 Created wheel for pybedtools: filename=pybedtools-0.11.0-cp311-cp311-linux_armv7l.whl size=13977150 sha256=d8cbe550f6f7f96d8c10caf3b6e8dae65cef411755af594f2da5aa81edb9386b 2025-01-02T17:10:18,239 Stored in directory: /tmp/pip-ephem-wheel-cache-toy0qp1l/wheels/29/a9/64/b72ced6183351e9fb889c0fc86eda39fab286a4b8838443314 2025-01-02T17:10:18,257 Successfully built pybedtools 2025-01-02T17:10:18,601 Removed build tracker: '/tmp/pip-build-tracker-ojuqg2zy'