2025-01-02T18:13:43,088 Disabling truststore because Python version isn't 3.10+ 2025-01-02T18:13:43,606 Created temporary directory: /tmp/pip-build-tracker-4x1kr35e 2025-01-02T18:13:43,607 Initialized build tracking at /tmp/pip-build-tracker-4x1kr35e 2025-01-02T18:13:43,607 Created build tracker: /tmp/pip-build-tracker-4x1kr35e 2025-01-02T18:13:43,607 Entered build tracker: /tmp/pip-build-tracker-4x1kr35e 2025-01-02T18:13:43,608 Created temporary directory: /tmp/pip-wheel-xsjn3fz2 2025-01-02T18:13:43,613 Created temporary directory: /tmp/pip-ephem-wheel-cache-uqxx3t9i 2025-01-02T18:13:43,659 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-02T18:13:43,662 2 location(s) to search for versions of pybedtools: 2025-01-02T18:13:43,662 * https://pypi.org/simple/pybedtools/ 2025-01-02T18:13:43,662 * https://www.piwheels.org/simple/pybedtools/ 2025-01-02T18:13:43,662 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2025-01-02T18:13:43,663 Getting page https://pypi.org/simple/pybedtools/ 2025-01-02T18:13:43,664 Found index url https://pypi.org/simple/ 2025-01-02T18:13:43,692 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2025-01-02T18:13:43,698 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2025-01-02T18:13:43,698 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2025-01-02T18:13:43,698 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2025-01-02T18:13:43,699 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2025-01-02T18:13:43,699 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2025-01-02T18:13:43,699 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2025-01-02T18:13:43,700 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2025-01-02T18:13:43,700 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2025-01-02T18:13:43,700 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2025-01-02T18:13:43,701 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2025-01-02T18:13:43,701 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2025-01-02T18:13:43,701 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2025-01-02T18:13:43,701 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2025-01-02T18:13:43,702 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2025-01-02T18:13:43,702 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2025-01-02T18:13:43,702 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2025-01-02T18:13:43,702 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2025-01-02T18:13:43,703 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2025-01-02T18:13:43,703 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2025-01-02T18:13:43,703 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2025-01-02T18:13:43,704 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2025-01-02T18:13:43,704 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2025-01-02T18:13:43,704 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2025-01-02T18:13:43,704 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2025-01-02T18:13:43,705 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2025-01-02T18:13:43,705 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2025-01-02T18:13:43,705 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2025-01-02T18:13:43,705 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2025-01-02T18:13:43,706 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2025-01-02T18:13:43,706 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2025-01-02T18:13:43,706 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2025-01-02T18:13:43,706 Found link https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.11.0 2025-01-02T18:13:43,707 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2025-01-02T18:13:43,707 Getting page https://www.piwheels.org/simple/pybedtools/ 2025-01-02T18:13:43,708 Found index url https://www.piwheels.org/simple/ 2025-01-02T18:13:43,757 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2025-01-02T18:13:43,778 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.11.0-cp311-cp311-linux_armv6l.whl#sha256=d8cbe550f6f7f96d8c10caf3b6e8dae65cef411755af594f2da5aa81edb9386b (from https://www.piwheels.org/simple/pybedtools/) 2025-01-02T18:13:43,778 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2025-01-02T18:13:43,793 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2025-01-02T18:13:43,794 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2025-01-02T18:13:43,812 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2025-01-02T18:13:43,814 Collecting pybedtools==0.11.0 2025-01-02T18:13:43,817 Created temporary directory: /tmp/pip-unpack-jzcn2a38 2025-01-02T18:13:43,923 Downloading pybedtools-0.11.0.tar.gz (12.5 MB) 2025-01-02T18:13:46,709 Added pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-4x1kr35e' 2025-01-02T18:13:46,712 Running setup.py (path:/tmp/pip-wheel-xsjn3fz2/pybedtools_1de70ca90a044c7b91a98c07c919d219/setup.py) egg_info for package pybedtools 2025-01-02T18:13:46,713 Created temporary directory: /tmp/pip-pip-egg-info-nkc7ss42 2025-01-02T18:13:46,713 Preparing metadata (setup.py): started 2025-01-02T18:13:46,714 Running command python setup.py egg_info 2025-01-02T18:13:47,435 /tmp/pip-wheel-xsjn3fz2/pybedtools_1de70ca90a044c7b91a98c07c919d219/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2025-01-02T18:13:47,436 import pkg_resources 2025-01-02T18:13:47,731 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'language_level' 2025-01-02T18:13:47,732 warnings.warn(msg) 2025-01-02T18:13:47,891 running egg_info 2025-01-02T18:13:47,918 creating /tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info 2025-01-02T18:13:47,919 writing /tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/PKG-INFO 2025-01-02T18:13:47,922 writing dependency_links to /tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/dependency_links.txt 2025-01-02T18:13:47,924 writing requirements to /tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/requires.txt 2025-01-02T18:13:47,925 writing top-level names to /tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/top_level.txt 2025-01-02T18:13:47,927 writing manifest file '/tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:48,017 reading manifest file '/tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:48,019 adding license file 'LICENSE.txt' 2025-01-02T18:13:48,026 writing manifest file '/tmp/pip-pip-egg-info-nkc7ss42/pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:48,120 Preparing metadata (setup.py): finished with status 'done' 2025-01-02T18:13:48,125 Source in /tmp/pip-wheel-xsjn3fz2/pybedtools_1de70ca90a044c7b91a98c07c919d219 has version 0.11.0, which satisfies requirement pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz 2025-01-02T18:13:48,126 Removed pybedtools==0.11.0 from https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-4x1kr35e' 2025-01-02T18:13:48,133 Created temporary directory: /tmp/pip-unpack-2_vyz43k 2025-01-02T18:13:48,133 Created temporary directory: /tmp/pip-unpack-9lhhujb4 2025-01-02T18:13:48,134 Building wheels for collected packages: pybedtools 2025-01-02T18:13:48,138 Created temporary directory: /tmp/pip-wheel-fql_5cz8 2025-01-02T18:13:48,138 Building wheel for pybedtools (setup.py): started 2025-01-02T18:13:48,139 Destination directory: /tmp/pip-wheel-fql_5cz8 2025-01-02T18:13:48,139 Running command python setup.py bdist_wheel 2025-01-02T18:13:48,848 /tmp/pip-wheel-xsjn3fz2/pybedtools_1de70ca90a044c7b91a98c07c919d219/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2025-01-02T18:13:48,849 import pkg_resources 2025-01-02T18:13:49,131 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'language_level' 2025-01-02T18:13:49,131 warnings.warn(msg) 2025-01-02T18:13:49,255 running bdist_wheel 2025-01-02T18:13:49,306 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2025-01-02T18:13:49,307 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:111: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-01-02T18:13:49,308 !! 2025-01-02T18:13:49,308 ******************************************************************************** 2025-01-02T18:13:49,308 With Python 2.7 end-of-life, support for building universal wheels 2025-01-02T18:13:49,308 (i.e., wheels that support both Python 2 and Python 3) 2025-01-02T18:13:49,308 is being obviated. 2025-01-02T18:13:49,308 Please discontinue using this option, or if you still need it, 2025-01-02T18:13:49,309 file an issue with pypa/setuptools describing your use case. 2025-01-02T18:13:49,309 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-01-02T18:13:49,309 or your builds will no longer be supported. 2025-01-02T18:13:49,309 ******************************************************************************** 2025-01-02T18:13:49,309 !! 2025-01-02T18:13:49,309 self.finalize_options() 2025-01-02T18:13:49,335 running build 2025-01-02T18:13:49,335 running build_py 2025-01-02T18:13:49,365 creating build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,367 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,369 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,371 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,373 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,374 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,378 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,380 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,383 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,386 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,388 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,391 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,393 creating build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,394 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,396 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,398 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,401 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,403 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,405 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,407 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,410 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,412 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,414 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,416 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,418 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,421 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2025-01-02T18:13:49,423 creating build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,424 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,426 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,428 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,431 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,434 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,436 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,438 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2025-01-02T18:13:49,441 creating build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,442 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,443 running egg_info 2025-01-02T18:13:49,469 creating pybedtools.egg-info 2025-01-02T18:13:49,470 writing pybedtools.egg-info/PKG-INFO 2025-01-02T18:13:49,473 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2025-01-02T18:13:49,475 writing requirements to pybedtools.egg-info/requires.txt 2025-01-02T18:13:49,476 writing top-level names to pybedtools.egg-info/top_level.txt 2025-01-02T18:13:49,478 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:49,525 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:49,526 adding license file 'LICENSE.txt' 2025-01-02T18:13:49,534 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2025-01-02T18:13:49,537 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2025-01-02T18:13:49,538 !! 2025-01-02T18:13:49,538 ******************************************************************************** 2025-01-02T18:13:49,538 ############################ 2025-01-02T18:13:49,538 # Package would be ignored # 2025-01-02T18:13:49,538 ############################ 2025-01-02T18:13:49,538 Python recognizes 'pybedtools.include' as an importable package[^1], 2025-01-02T18:13:49,539 but it is absent from setuptools' `packages` configuration. 2025-01-02T18:13:49,539 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-02T18:13:49,539 package, please make sure that 'pybedtools.include' is explicitly added 2025-01-02T18:13:49,539 to the `packages` configuration field. 2025-01-02T18:13:49,539 Alternatively, you can also rely on setuptools' discovery methods 2025-01-02T18:13:49,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-02T18:13:49,539 instead of `find_packages(...)`/`find:`). 2025-01-02T18:13:49,540 You can read more about "package discovery" on setuptools documentation page: 2025-01-02T18:13:49,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-02T18:13:49,540 If you don't want 'pybedtools.include' to be distributed and are 2025-01-02T18:13:49,540 already explicitly excluding 'pybedtools.include' via 2025-01-02T18:13:49,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-02T18:13:49,541 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-02T18:13:49,541 combination with a more fine grained `package-data` configuration. 2025-01-02T18:13:49,541 You can read more about "package data files" on setuptools documentation page: 2025-01-02T18:13:49,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-02T18:13:49,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-02T18:13:49,542 even if it does not contain any `.py` files. 2025-01-02T18:13:49,542 On the other hand, currently there is no concept of package data 2025-01-02T18:13:49,542 directory, all directories are treated like packages. 2025-01-02T18:13:49,542 ******************************************************************************** 2025-01-02T18:13:49,542 !! 2025-01-02T18:13:49,542 check.warn(importable) 2025-01-02T18:13:49,557 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,559 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,577 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,579 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,582 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,595 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:49,597 creating build/lib.linux-armv7l-cpython-39/pybedtools/include 2025-01-02T18:13:49,598 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2025-01-02T18:13:49,602 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2025-01-02T18:13:49,604 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2025-01-02T18:13:49,606 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,738 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,740 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,742 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,744 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,746 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,748 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,752 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,754 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,756 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,759 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,762 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,765 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,767 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,769 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,771 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,773 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,778 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,780 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,826 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,829 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,831 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,833 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,836 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,838 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,844 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,846 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,849 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,885 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,894 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,896 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,898 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,901 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,903 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,906 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,908 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,910 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,912 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,914 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,917 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,919 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,921 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,924 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,926 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,928 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,932 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,934 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,936 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,938 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,940 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,948 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,950 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,952 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,956 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,960 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,965 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,967 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,969 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,971 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,973 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,975 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,980 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,983 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,985 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,987 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,989 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:49,994 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,006 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,009 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,011 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,013 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,015 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,019 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,023 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,026 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,030 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,035 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,040 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,044 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,048 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,050 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,052 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,054 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,056 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,058 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,060 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,062 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,064 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,066 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,074 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,086 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,088 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,090 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,092 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,094 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,096 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,098 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,100 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,102 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,104 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,106 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,108 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,110 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,112 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,114 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,116 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,118 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,125 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,127 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,129 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,131 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,138 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,140 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,142 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,144 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,146 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,148 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,150 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,153 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,156 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,158 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,160 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,301 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,303 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,306 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,308 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,310 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,312 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,314 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,316 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,318 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,320 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,323 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,325 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,328 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,359 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,399 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2025-01-02T18:13:50,405 running build_ext 2025-01-02T18:13:50,413 building 'pybedtools.cbedtools' extension 2025-01-02T18:13:50,414 creating build/temp.linux-armv7l-cpython-39/pybedtools 2025-01-02T18:13:50,415 creating build/temp.linux-armv7l-cpython-39/pybedtools/include 2025-01-02T18:13:50,417 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o 2025-01-02T18:14:15,096 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2025-01-02T18:14:22,733 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2025-01-02T18:14:23,972 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2025-01-02T18:14:25,304 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so 2025-01-02T18:14:25,725 building 'pybedtools.featurefuncs' extension 2025-01-02T18:14:25,727 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o 2025-01-02T18:14:37,636 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2025-01-02T18:14:45,284 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2025-01-02T18:14:46,524 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2025-01-02T18:14:47,877 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so 2025-01-02T18:14:48,255 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-02T18:14:48,255 !! 2025-01-02T18:14:48,255 ******************************************************************************** 2025-01-02T18:14:48,255 Please avoid running ``setup.py`` directly. 2025-01-02T18:14:48,256 Instead, use pypa/build, pypa/installer or other 2025-01-02T18:14:48,256 standards-based tools. 2025-01-02T18:14:48,256 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-02T18:14:48,256 ******************************************************************************** 2025-01-02T18:14:48,256 !! 2025-01-02T18:14:48,257 self.initialize_options() 2025-01-02T18:14:48,279 installing to build/bdist.linux-armv7l/wheel 2025-01-02T18:14:48,280 running install 2025-01-02T18:14:48,306 running install_lib 2025-01-02T18:14:48,332 creating build/bdist.linux-armv7l/wheel 2025-01-02T18:14:48,334 creating build/bdist.linux-armv7l/wheel/pybedtools 2025-01-02T18:14:48,336 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2025-01-02T18:14:48,337 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T18:14:48,340 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T18:14:48,342 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools/include 2025-01-02T18:14:48,344 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,346 copying build/lib.linux-armv7l-cpython-39/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,349 copying build/lib.linux-armv7l-cpython-39/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,351 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,353 copying build/lib.linux-armv7l-cpython-39/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,355 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2025-01-02T18:14:48,356 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,358 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,359 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,363 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,364 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,367 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,368 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,370 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,373 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,374 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,376 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,378 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,383 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2025-01-02T18:14:48,384 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,526 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,528 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,530 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,532 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,534 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,535 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,539 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,541 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,542 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,544 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,547 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,549 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,551 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,553 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,554 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,556 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,560 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,562 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,607 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,609 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,610 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,612 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,614 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,616 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,621 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,622 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,624 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,653 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,661 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,663 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,665 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,667 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,669 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,670 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,672 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,674 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,675 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,677 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,679 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,681 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,682 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,685 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,686 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,688 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,691 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,693 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,695 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,696 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,698 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,703 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,705 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,707 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,710 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,714 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,716 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,718 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,720 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,722 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,724 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,726 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,730 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,732 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,734 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,735 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,738 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,741 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,753 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,756 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/./pybedtools/test/data 2025-01-02T18:14:48,758 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/./pybedtools/test 2025-01-02T18:14:48,759 copying build/lib.linux-armv7l-cpython-39/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,762 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2025-01-02T18:14:48,763 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,765 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,767 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,770 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,772 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,774 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,776 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/./pybedtools/contrib 2025-01-02T18:14:48,778 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,832 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,845 copying build/lib.linux-armv7l-cpython-39/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,847 copying build/lib.linux-armv7l-cpython-39/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,854 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,892 copying build/lib.linux-armv7l-cpython-39/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,894 copying build/lib.linux-armv7l-cpython-39/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,898 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,901 copying build/lib.linux-armv7l-cpython-39/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,906 copying build/lib.linux-armv7l-cpython-39/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,908 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,927 copying build/lib.linux-armv7l-cpython-39/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,929 copying build/lib.linux-armv7l-cpython-39/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/./pybedtools 2025-01-02T18:14:48,931 running install_egg_info 2025-01-02T18:14:48,973 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/./pybedtools-0.11.0-py3.9.egg-info 2025-01-02T18:14:48,986 running install_scripts 2025-01-02T18:14:49,037 creating build/bdist.linux-armv7l/wheel/pybedtools-0.11.0.dist-info/WHEEL 2025-01-02T18:14:49,040 creating '/tmp/pip-wheel-fql_5cz8/pybedtools-0.11.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-02T18:14:49,044 adding 'pybedtools/_Window.pyx' 2025-01-02T18:14:49,046 adding 'pybedtools/__init__.py' 2025-01-02T18:14:49,063 adding 'pybedtools/bedtool.py' 2025-01-02T18:14:49,137 adding 'pybedtools/cbedtools.cpp' 2025-01-02T18:14:49,641 adding 'pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so' 2025-01-02T18:14:49,660 adding 'pybedtools/cbedtools.pxd' 2025-01-02T18:14:49,664 adding 'pybedtools/cbedtools.pyx' 2025-01-02T18:14:49,701 adding 'pybedtools/featurefuncs.cpp' 2025-01-02T18:14:49,990 adding 'pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so' 2025-01-02T18:14:50,003 adding 'pybedtools/featurefuncs.pyx' 2025-01-02T18:14:50,005 adding 'pybedtools/filenames.py' 2025-01-02T18:14:50,014 adding 'pybedtools/genome_registry.py' 2025-01-02T18:14:50,019 adding 'pybedtools/helpers.py' 2025-01-02T18:14:50,021 adding 'pybedtools/logger.py' 2025-01-02T18:14:50,023 adding 'pybedtools/parallel.py' 2025-01-02T18:14:50,025 adding 'pybedtools/paths.py' 2025-01-02T18:14:50,027 adding 'pybedtools/settings.py' 2025-01-02T18:14:50,028 adding 'pybedtools/stats.py' 2025-01-02T18:14:50,030 adding 'pybedtools/version.py' 2025-01-02T18:14:50,032 adding 'pybedtools/contrib/__init__.py' 2025-01-02T18:14:50,034 adding 'pybedtools/contrib/bigbed.py' 2025-01-02T18:14:50,036 adding 'pybedtools/contrib/bigwig.py' 2025-01-02T18:14:50,039 adding 'pybedtools/contrib/intersection_matrix.py' 2025-01-02T18:14:50,042 adding 'pybedtools/contrib/long_range_interaction.py' 2025-01-02T18:14:50,045 adding 'pybedtools/contrib/plotting.py' 2025-01-02T18:14:50,047 adding 'pybedtools/contrib/venn_maker.py' 2025-01-02T18:14:50,050 adding 'pybedtools/include/bedFile.cpp' 2025-01-02T18:14:50,052 adding 'pybedtools/include/fileType.cpp' 2025-01-02T18:14:50,054 adding 'pybedtools/include/gzstream.cpp' 2025-01-02T18:14:50,057 adding 'pybedtools/test/__init__.py' 2025-01-02T18:14:50,058 adding 'pybedtools/test/genomepy_integration.py' 2025-01-02T18:14:50,060 adding 'pybedtools/test/regression_tests.py' 2025-01-02T18:14:50,066 adding 'pybedtools/test/test_1.py' 2025-01-02T18:14:50,069 adding 'pybedtools/test/test_cbedtools.py' 2025-01-02T18:14:50,071 adding 'pybedtools/test/test_contrib.py' 2025-01-02T18:14:50,076 adding 'pybedtools/test/test_gzip_support.py' 2025-01-02T18:14:50,078 adding 'pybedtools/test/test_helpers.py' 2025-01-02T18:14:50,082 adding 'pybedtools/test/test_issues.py' 2025-01-02T18:14:50,085 adding 'pybedtools/test/test_iter.py' 2025-01-02T18:14:50,087 adding 'pybedtools/test/test_len_leak.py' 2025-01-02T18:14:50,088 adding 'pybedtools/test/test_pathlib.py' 2025-01-02T18:14:50,090 adding 'pybedtools/test/tfuncs.py' 2025-01-02T18:14:50,093 adding 'pybedtools/test/data/1000genomes-example.vcf' 2025-01-02T18:14:50,096 adding 'pybedtools/test/data/164.gtf' 2025-01-02T18:14:50,109 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2025-01-02T18:14:50,123 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2025-01-02T18:14:50,134 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2025-01-02T18:14:50,146 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2025-01-02T18:14:50,170 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2025-01-02T18:14:50,193 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2025-01-02T18:14:50,210 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2025-01-02T18:14:50,226 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2025-01-02T18:14:50,229 adding 'pybedtools/test/data/__init__.py' 2025-01-02T18:14:50,230 adding 'pybedtools/test/data/a.bed' 2025-01-02T18:14:50,232 adding 'pybedtools/test/data/a.igv_script' 2025-01-02T18:14:50,234 adding 'pybedtools/test/data/a.links.html' 2025-01-02T18:14:50,236 adding 'pybedtools/test/data/b.bed' 2025-01-02T18:14:50,237 adding 'pybedtools/test/data/bedpe.bed' 2025-01-02T18:14:50,239 adding 'pybedtools/test/data/bedpe2.bed' 2025-01-02T18:14:50,241 adding 'pybedtools/test/data/c.gff' 2025-01-02T18:14:50,242 adding 'pybedtools/test/data/d.gff' 2025-01-02T18:14:50,244 adding 'pybedtools/test/data/democonfig.yaml' 2025-01-02T18:14:50,292 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2025-01-02T18:14:50,342 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2025-01-02T18:14:50,346 adding 'pybedtools/test/data/example.narrowPeak' 2025-01-02T18:14:50,348 adding 'pybedtools/test/data/exons.gff' 2025-01-02T18:14:50,350 adding 'pybedtools/test/data/expand_test.bed' 2025-01-02T18:14:50,351 adding 'pybedtools/test/data/gdc.1.100.bam' 2025-01-02T18:14:50,353 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2025-01-02T18:14:50,354 adding 'pybedtools/test/data/gdc.50.200.bam' 2025-01-02T18:14:50,356 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2025-01-02T18:14:50,357 adding 'pybedtools/test/data/gdc.bam' 2025-01-02T18:14:50,359 adding 'pybedtools/test/data/gdc.bed' 2025-01-02T18:14:50,361 adding 'pybedtools/test/data/gdc.cram' 2025-01-02T18:14:50,362 adding 'pybedtools/test/data/gdc.gff' 2025-01-02T18:14:50,364 adding 'pybedtools/test/data/gdc.gff.gz' 2025-01-02T18:14:50,366 adding 'pybedtools/test/data/gdc.othersort.bam' 2025-01-02T18:14:50,367 adding 'pybedtools/test/data/gdc.sorted.bam' 2025-01-02T18:14:50,369 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2025-01-02T18:14:50,371 adding 'pybedtools/test/data/genome.fa' 2025-01-02T18:14:50,395 adding 'pybedtools/test/data/hg19.gff' 2025-01-02T18:14:50,398 adding 'pybedtools/test/data/hg38-base.bed' 2025-01-02T18:14:50,399 adding 'pybedtools/test/data/hg38-problem.bed' 2025-01-02T18:14:50,401 adding 'pybedtools/test/data/issue319.bed' 2025-01-02T18:14:50,412 adding 'pybedtools/test/data/issue319.out.bed' 2025-01-02T18:14:50,416 adding 'pybedtools/test/data/issue319.vcf.gz' 2025-01-02T18:14:50,418 adding 'pybedtools/test/data/issue_121.bam' 2025-01-02T18:14:50,420 adding 'pybedtools/test/data/m1.bed' 2025-01-02T18:14:50,421 adding 'pybedtools/test/data/mm9.bed12' 2025-01-02T18:14:50,423 adding 'pybedtools/test/data/multibamcov_test.bed' 2025-01-02T18:14:50,425 adding 'pybedtools/test/data/reads.bam' 2025-01-02T18:14:50,431 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2025-01-02T18:14:50,434 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2025-01-02T18:14:50,436 adding 'pybedtools/test/data/small.bam' 2025-01-02T18:14:50,437 adding 'pybedtools/test/data/small.fastq' 2025-01-02T18:14:51,387 adding 'pybedtools/test/data/snps.bed.gz' 2025-01-02T18:14:51,442 adding 'pybedtools/test/data/tag_test1.bed' 2025-01-02T18:14:51,444 adding 'pybedtools/test/data/tag_test2.bed' 2025-01-02T18:14:51,461 adding 'pybedtools/test/data/test.fa' 2025-01-02T18:14:51,463 adding 'pybedtools/test/data/test.fa.fai' 2025-01-02T18:14:51,466 adding 'pybedtools/test/data/test_bedpe.bed' 2025-01-02T18:14:51,493 adding 'pybedtools/test/data/test_peaks.bed' 2025-01-02T18:14:51,496 adding 'pybedtools/test/data/test_tsses.bed' 2025-01-02T18:14:51,498 adding 'pybedtools/test/data/v.vcf' 2025-01-02T18:14:51,510 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2025-01-02T18:14:51,513 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2025-01-02T18:14:51,516 adding 'pybedtools/test/data/venn.b.bed' 2025-01-02T18:14:51,532 adding 'pybedtools/test/data/venn.c.bed' 2025-01-02T18:14:51,743 adding 'pybedtools/test/data/x.bam' 2025-01-02T18:14:52,100 adding 'pybedtools/test/data/x.bed' 2025-01-02T18:14:52,118 adding 'pybedtools/test/data/y.bam' 2025-01-02T18:14:52,135 adding 'pybedtools-0.11.0.dist-info/LICENSE.txt' 2025-01-02T18:14:52,137 adding 'pybedtools-0.11.0.dist-info/METADATA' 2025-01-02T18:14:52,141 adding 'pybedtools-0.11.0.dist-info/WHEEL' 2025-01-02T18:14:52,143 adding 'pybedtools-0.11.0.dist-info/top_level.txt' 2025-01-02T18:14:52,145 adding 'pybedtools-0.11.0.dist-info/RECORD' 2025-01-02T18:14:54,416 removing build/bdist.linux-armv7l/wheel 2025-01-02T18:14:54,568 Building wheel for pybedtools (setup.py): finished with status 'done' 2025-01-02T18:14:54,709 Created wheel for pybedtools: filename=pybedtools-0.11.0-cp39-cp39-linux_armv7l.whl size=13995342 sha256=d30453e7e37632aedc09a4e894ffeeb978e8a692bc5c7802720fdb33ab176c8f 2025-01-02T18:14:54,710 Stored in directory: /tmp/pip-ephem-wheel-cache-uqxx3t9i/wheels/5e/c8/df/6d2d7b672c4c3b199a178cd5ab2753e8ead6c51da5dc27017c 2025-01-02T18:14:54,731 Successfully built pybedtools 2025-01-02T18:14:55,101 Removed build tracker: '/tmp/pip-build-tracker-4x1kr35e'