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2025.1.3.1 2025-01-03T22:56:32,482 Fetching project page and analyzing links: https://www.piwheels.org/simple/read-structure-step/ 2025-01-03T22:56:32,482 Getting page https://www.piwheels.org/simple/read-structure-step/ 2025-01-03T22:56:32,484 Found index url https://www.piwheels.org/simple/ 2025-01-03T22:56:32,650 Fetched page https://www.piwheels.org/simple/read-structure-step/ as text/html 2025-01-03T22:56:32,661 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2025.1.3-py2.py3-none-any.whl#sha256=7c4c402dc92175f2e19489885fdfb0809924d8241da8705d9e822d30ee646648 (from https://www.piwheels.org/simple/read-structure-step/) 2025-01-03T22:56:32,661 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2024.12.29-py2.py3-none-any.whl#sha256=83e9c07c48ac8282a6b2f53af7450ecb6384d20c09176300a6ce8fb82fa3d348 (from 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https://www.piwheels.org/simple/read-structure-step/) 2025-01-03T22:56:32,680 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-0.8.0-py2.py3-none-any.whl#sha256=ae20bc216eb9b6d69544ee14674b0fe79722609b8217ce0ea3fcbcb8d0cbfdd9 (from https://www.piwheels.org/simple/read-structure-step/) 2025-01-03T22:56:32,681 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-0.7.1-py2.py3-none-any.whl#sha256=d8729c1ccf4d8dbb6990e66dee11593fbb7918fa3b9eb3f34942e1fb55ced528 (from https://www.piwheels.org/simple/read-structure-step/) 2025-01-03T22:56:32,682 Skipping link: not a file: https://www.piwheels.org/simple/read-structure-step/ 2025-01-03T22:56:32,682 Skipping link: not a file: https://pypi.org/simple/read-structure-step/ 2025-01-03T22:56:32,706 Given no hashes to check 1 links for project 'read-structure-step': discarding no candidates 2025-01-03T22:56:32,708 Collecting read-structure-step==2025.1.3.1 2025-01-03T22:56:32,711 Created temporary directory: /tmp/pip-unpack-peflvyo0 2025-01-03T22:56:32,944 Downloading read_structure_step-2025.1.3.1.tar.gz (936 kB) 2025-01-03T22:56:33,358 Added read-structure-step==2025.1.3.1 from https://files.pythonhosted.org/packages/80/0d/a4f08744dc80a3e06d74803476b0b0e4fc88a51c897f07cd85313589ec26/read_structure_step-2025.1.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-aksy_7lz' 2025-01-03T22:56:33,359 Running setup.py (path:/tmp/pip-wheel-m8l659x4/read-structure-step_3876e1562f5e4d4bb9796888b8a5ce69/setup.py) egg_info for package read-structure-step 2025-01-03T22:56:33,360 Created temporary directory: /tmp/pip-pip-egg-info-zll1y31m 2025-01-03T22:56:33,361 Preparing metadata (setup.py): started 2025-01-03T22:56:33,362 Running command python setup.py egg_info 2025-01-03T22:56:33,972 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2025-01-03T22:56:33,972 warnings.warn(msg) 2025-01-03T22:56:34,516 running egg_info 2025-01-03T22:56:34,544 creating /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info 2025-01-03T22:56:34,546 writing /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/PKG-INFO 2025-01-03T22:56:34,551 writing dependency_links to /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/dependency_links.txt 2025-01-03T22:56:34,554 writing entry points to /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/entry_points.txt 2025-01-03T22:56:34,555 writing requirements to /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/requires.txt 2025-01-03T22:56:34,556 writing top-level names to /tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/top_level.txt 2025-01-03T22:56:34,558 writing manifest file '/tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/SOURCES.txt' 2025-01-03T22:56:34,641 reading manifest file '/tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/SOURCES.txt' 2025-01-03T22:56:34,642 reading manifest template 'MANIFEST.in' 2025-01-03T22:56:34,713 warning: no files found matching '*.jpg' under directory 'docs' 2025-01-03T22:56:34,738 warning: no files found matching '*.gif' under directory 'docs' 2025-01-03T22:56:34,739 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-01-03T22:56:34,741 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-01-03T22:56:34,741 adding license file 'LICENSE' 2025-01-03T22:56:34,742 adding license file 'AUTHORS.rst' 2025-01-03T22:56:34,747 writing manifest file '/tmp/pip-pip-egg-info-zll1y31m/read_structure_step.egg-info/SOURCES.txt' 2025-01-03T22:56:34,856 Preparing metadata (setup.py): finished with status 'done' 2025-01-03T22:56:34,861 Source in /tmp/pip-wheel-m8l659x4/read-structure-step_3876e1562f5e4d4bb9796888b8a5ce69 has version 2025.1.3.1, which satisfies requirement read-structure-step==2025.1.3.1 from https://files.pythonhosted.org/packages/80/0d/a4f08744dc80a3e06d74803476b0b0e4fc88a51c897f07cd85313589ec26/read_structure_step-2025.1.3.1.tar.gz 2025-01-03T22:56:34,862 Removed read-structure-step==2025.1.3.1 from https://files.pythonhosted.org/packages/80/0d/a4f08744dc80a3e06d74803476b0b0e4fc88a51c897f07cd85313589ec26/read_structure_step-2025.1.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-aksy_7lz' 2025-01-03T22:56:34,867 Created temporary directory: /tmp/pip-unpack-8iwuo0cz 2025-01-03T22:56:34,869 Created temporary directory: /tmp/pip-unpack-o2fqzo9z 2025-01-03T22:56:34,869 Building wheels for collected packages: read-structure-step 2025-01-03T22:56:34,874 Created temporary directory: /tmp/pip-wheel-ckvgtg6e 2025-01-03T22:56:34,875 Building wheel for read-structure-step (setup.py): started 2025-01-03T22:56:34,876 Destination directory: /tmp/pip-wheel-ckvgtg6e 2025-01-03T22:56:34,876 Running command python setup.py bdist_wheel 2025-01-03T22:56:35,480 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' 2025-01-03T22:56:35,480 warnings.warn(msg) 2025-01-03T22:56:36,119 running bdist_wheel 2025-01-03T22:56:36,203 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:111: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-01-03T22:56:36,203 !! 2025-01-03T22:56:36,205 ******************************************************************************** 2025-01-03T22:56:36,205 With Python 2.7 end-of-life, support for building universal wheels 2025-01-03T22:56:36,206 (i.e., wheels that support both Python 2 and Python 3) 2025-01-03T22:56:36,206 is being obviated. 2025-01-03T22:56:36,207 Please discontinue using this option, or if you still need it, 2025-01-03T22:56:36,208 file an issue with pypa/setuptools describing your use case. 2025-01-03T22:56:36,209 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-01-03T22:56:36,210 or your builds will no longer be supported. 2025-01-03T22:56:36,210 ******************************************************************************** 2025-01-03T22:56:36,211 !! 2025-01-03T22:56:36,212 self.finalize_options() 2025-01-03T22:56:36,264 running build 2025-01-03T22:56:36,264 running build_py 2025-01-03T22:56:36,270 creating build/lib/read_structure_step 2025-01-03T22:56:36,272 copying read_structure_step/write_structure_parameters.py -> build/lib/read_structure_step 2025-01-03T22:56:36,275 copying read_structure_step/read.py -> build/lib/read_structure_step 2025-01-03T22:56:36,279 copying read_structure_step/utils.py -> build/lib/read_structure_step 2025-01-03T22:56:36,281 copying read_structure_step/read_structure_step.py -> build/lib/read_structure_step 2025-01-03T22:56:36,285 copying read_structure_step/read_structure.py -> build/lib/read_structure_step 2025-01-03T22:56:36,291 copying read_structure_step/write_structure.py -> build/lib/read_structure_step 2025-01-03T22:56:36,294 copying read_structure_step/write_structure_step.py -> build/lib/read_structure_step 2025-01-03T22:56:36,296 copying read_structure_step/__init__.py -> build/lib/read_structure_step 2025-01-03T22:56:36,298 copying read_structure_step/tk_write_structure.py -> build/lib/read_structure_step 2025-01-03T22:56:36,300 copying read_structure_step/errors.py -> build/lib/read_structure_step 2025-01-03T22:56:36,302 copying read_structure_step/tk_read_structure.py -> build/lib/read_structure_step 2025-01-03T22:56:36,305 copying read_structure_step/_version.py -> build/lib/read_structure_step 2025-01-03T22:56:36,307 copying read_structure_step/write.py -> build/lib/read_structure_step 2025-01-03T22:56:36,308 copying read_structure_step/read_structure_parameters.py -> build/lib/read_structure_step 2025-01-03T22:56:36,311 creating build/lib/tests 2025-01-03T22:56:36,312 copying tests/test_utils.py -> build/lib/tests 2025-01-03T22:56:36,315 copying tests/build_filenames.py -> build/lib/tests 2025-01-03T22:56:36,317 copying tests/mopac_exists.py -> build/lib/tests 2025-01-03T22:56:36,319 copying tests/test_read_structure_step.py -> build/lib/tests 2025-01-03T22:56:36,321 copying tests/test_cif.py -> build/lib/tests 2025-01-03T22:56:36,323 copying tests/__init__.py -> build/lib/tests 2025-01-03T22:56:36,325 copying tests/test_formats.py -> build/lib/tests 2025-01-03T22:56:36,543 creating build/lib/read_structure_step/formats 2025-01-03T22:56:36,544 copying read_structure_step/formats/registries.py -> build/lib/read_structure_step/formats 2025-01-03T22:56:36,546 copying read_structure_step/formats/__init__.py -> build/lib/read_structure_step/formats 2025-01-03T22:56:36,548 copying read_structure_step/formats/which.py -> build/lib/read_structure_step/formats 2025-01-03T22:56:36,551 creating build/lib/read_structure_step/formats/cif 2025-01-03T22:56:36,552 copying read_structure_step/formats/cif/cif.py -> build/lib/read_structure_step/formats/cif 2025-01-03T22:56:36,555 copying read_structure_step/formats/cif/mmcif.py -> build/lib/read_structure_step/formats/cif 2025-01-03T22:56:36,558 copying read_structure_step/formats/cif/__init__.py -> build/lib/read_structure_step/formats/cif 2025-01-03T22:56:36,560 creating build/lib/read_structure_step/formats/mop 2025-01-03T22:56:36,562 copying read_structure_step/formats/mop/obabel.py -> build/lib/read_structure_step/formats/mop 2025-01-03T22:56:36,565 copying read_structure_step/formats/mop/find_mopac.py -> build/lib/read_structure_step/formats/mop 2025-01-03T22:56:36,567 copying read_structure_step/formats/mop/__init__.py -> build/lib/read_structure_step/formats/mop 2025-01-03T22:56:36,571 creating build/lib/read_structure_step/formats/xyz 2025-01-03T22:56:36,572 copying read_structure_step/formats/xyz/__init__.py -> build/lib/read_structure_step/formats/xyz 2025-01-03T22:56:36,576 copying read_structure_step/formats/xyz/xyz.py -> build/lib/read_structure_step/formats/xyz 2025-01-03T22:56:36,579 creating build/lib/read_structure_step/formats/mol2 2025-01-03T22:56:36,580 copying read_structure_step/formats/mol2/mol2.py -> build/lib/read_structure_step/formats/mol2 2025-01-03T22:56:36,583 copying read_structure_step/formats/mol2/__init__.py -> build/lib/read_structure_step/formats/mol2 2025-01-03T22:56:36,585 creating build/lib/read_structure_step/formats/sdf 2025-01-03T22:56:36,586 copying read_structure_step/formats/sdf/sdf.py -> build/lib/read_structure_step/formats/sdf 2025-01-03T22:56:36,590 copying read_structure_step/formats/sdf/__init__.py -> build/lib/read_structure_step/formats/sdf 2025-01-03T22:56:36,592 creating build/lib/read_structure_step/formats/smi 2025-01-03T22:56:36,593 copying read_structure_step/formats/smi/__init__.py -> build/lib/read_structure_step/formats/smi 2025-01-03T22:56:36,595 copying read_structure_step/formats/smi/smi.py -> build/lib/read_structure_step/formats/smi 2025-01-03T22:56:36,600 creating build/lib/read_structure_step/formats/openbabel_io 2025-01-03T22:56:36,601 copying read_structure_step/formats/openbabel_io/obabel.py -> build/lib/read_structure_step/formats/openbabel_io 2025-01-03T22:56:36,604 copying read_structure_step/formats/openbabel_io/__init__.py -> build/lib/read_structure_step/formats/openbabel_io 2025-01-03T22:56:36,606 copying read_structure_step/formats/openbabel_io/checkers.py -> build/lib/read_structure_step/formats/openbabel_io 2025-01-03T22:56:36,608 running egg_info 2025-01-03T22:56:36,636 writing read_structure_step.egg-info/PKG-INFO 2025-01-03T22:56:36,640 writing dependency_links to read_structure_step.egg-info/dependency_links.txt 2025-01-03T22:56:36,642 writing entry points to read_structure_step.egg-info/entry_points.txt 2025-01-03T22:56:36,643 writing requirements to read_structure_step.egg-info/requires.txt 2025-01-03T22:56:36,645 writing top-level names to read_structure_step.egg-info/top_level.txt 2025-01-03T22:56:36,684 reading manifest file 'read_structure_step.egg-info/SOURCES.txt' 2025-01-03T22:56:36,692 reading manifest template 'MANIFEST.in' 2025-01-03T22:56:36,754 warning: no files found matching '*.jpg' under directory 'docs' 2025-01-03T22:56:36,779 warning: no files found matching '*.gif' under directory 'docs' 2025-01-03T22:56:36,781 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-01-03T22:56:36,782 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-01-03T22:56:36,782 adding license file 'LICENSE' 2025-01-03T22:56:36,783 adding license file 'AUTHORS.rst' 2025-01-03T22:56:36,789 writing manifest file 'read_structure_step.egg-info/SOURCES.txt' 2025-01-03T22:56:36,792 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'read_structure_step.data' is absent from the `packages` configuration. 2025-01-03T22:56:36,793 !! 2025-01-03T22:56:36,794 ******************************************************************************** 2025-01-03T22:56:36,795 ############################ 2025-01-03T22:56:36,795 # Package would be ignored # 2025-01-03T22:56:36,796 ############################ 2025-01-03T22:56:36,796 Python recognizes 'read_structure_step.data' as an importable package[^1], 2025-01-03T22:56:36,797 but it is absent from setuptools' `packages` configuration. 2025-01-03T22:56:36,798 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-03T22:56:36,799 package, please make sure that 'read_structure_step.data' is explicitly added 2025-01-03T22:56:36,799 to the `packages` configuration field. 2025-01-03T22:56:36,800 Alternatively, you can also rely on setuptools' discovery methods 2025-01-03T22:56:36,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-03T22:56:36,801 instead of `find_packages(...)`/`find:`). 2025-01-03T22:56:36,803 You can read more about "package discovery" on setuptools documentation page: 2025-01-03T22:56:36,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-03T22:56:36,805 If you don't want 'read_structure_step.data' to be distributed and are 2025-01-03T22:56:36,805 already explicitly excluding 'read_structure_step.data' via 2025-01-03T22:56:36,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-03T22:56:36,806 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-03T22:56:36,807 combination with a more fine grained `package-data` configuration. 2025-01-03T22:56:36,808 You can read more about "package data files" on setuptools documentation page: 2025-01-03T22:56:36,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-03T22:56:36,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-03T22:56:36,811 even if it does not contain any `.py` files. 2025-01-03T22:56:36,811 On the other hand, currently there is no concept of package data 2025-01-03T22:56:36,812 directory, all directories are treated like packages. 2025-01-03T22:56:36,812 ******************************************************************************** 2025-01-03T22:56:36,813 !! 2025-01-03T22:56:36,814 check.warn(importable) 2025-01-03T22:56:36,814 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'tests.data' is absent from the `packages` configuration. 2025-01-03T22:56:36,815 !! 2025-01-03T22:56:36,815 ******************************************************************************** 2025-01-03T22:56:36,816 ############################ 2025-01-03T22:56:36,816 # Package would be ignored # 2025-01-03T22:56:36,817 ############################ 2025-01-03T22:56:36,818 Python recognizes 'tests.data' as an importable package[^1], 2025-01-03T22:56:36,818 but it is absent from setuptools' `packages` configuration. 2025-01-03T22:56:36,819 This leads to an ambiguous overall configuration. If you want to distribute this 2025-01-03T22:56:36,819 package, please make sure that 'tests.data' is explicitly added 2025-01-03T22:56:36,820 to the `packages` configuration field. 2025-01-03T22:56:36,821 Alternatively, you can also rely on setuptools' discovery methods 2025-01-03T22:56:36,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-01-03T22:56:36,822 instead of `find_packages(...)`/`find:`). 2025-01-03T22:56:36,823 You can read more about "package discovery" on setuptools documentation page: 2025-01-03T22:56:36,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-01-03T22:56:36,826 If you don't want 'tests.data' to be distributed and are 2025-01-03T22:56:36,826 already explicitly excluding 'tests.data' via 2025-01-03T22:56:36,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-01-03T22:56:36,827 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-01-03T22:56:36,828 combination with a more fine grained `package-data` configuration. 2025-01-03T22:56:36,829 You can read more about "package data files" on setuptools documentation page: 2025-01-03T22:56:36,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-01-03T22:56:36,831 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-01-03T22:56:36,832 even if it does not contain any `.py` files. 2025-01-03T22:56:36,833 On the other hand, currently there is no concept of package data 2025-01-03T22:56:36,833 directory, all directories are treated like packages. 2025-01-03T22:56:36,834 ******************************************************************************** 2025-01-03T22:56:36,835 !! 2025-01-03T22:56:36,836 check.warn(importable) 2025-01-03T22:56:36,837 creating build/lib/read_structure_step/data 2025-01-03T22:56:36,837 copying read_structure_step/data/references.bib -> build/lib/read_structure_step/data 2025-01-03T22:56:36,838 copying tests/methylidyne.mop -> build/lib/tests 2025-01-03T22:56:36,838 creating build/lib/tests/data 2025-01-03T22:56:36,839 copying tests/data/3TR_model.json -> build/lib/tests/data 2025-01-03T22:56:36,840 copying tests/data/3TR_model.mol2 -> build/lib/tests/data 2025-01-03T22:56:36,840 copying tests/data/3TR_model.pdb -> build/lib/tests/data 2025-01-03T22:56:36,841 copying tests/data/3TR_model.sdf -> build/lib/tests/data 2025-01-03T22:56:36,842 copying tests/data/3TR_model.sdf.bz2 -> build/lib/tests/data 2025-01-03T22:56:36,843 copying tests/data/3TR_model.sdf.gz -> build/lib/tests/data 2025-01-03T22:56:36,843 copying tests/data/3TR_model.xyz -> build/lib/tests/data 2025-01-03T22:56:36,843 copying tests/data/3TR_model_MN.xyz -> build/lib/tests/data 2025-01-03T22:56:36,844 copying tests/data/ABENEB01.cif -> build/lib/tests/data 2025-01-03T22:56:36,844 copying tests/data/Cr_ACETCR.mop -> build/lib/tests/data 2025-01-03T22:56:36,845 copying tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop -> build/lib/tests/data 2025-01-03T22:56:36,845 copying tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop -> build/lib/tests/data 2025-01-03T22:56:36,847 copying tests/data/acetonitrile.mop -> build/lib/tests/data 2025-01-03T22:56:36,849 copying tests/data/benzene.cif -> build/lib/tests/data 2025-01-03T22:56:36,852 copying tests/data/lithium fluoride, trimer.mop -> build/lib/tests/data 2025-01-03T22:56:36,855 copying tests/data/methylidyne.mop -> build/lib/tests/data 2025-01-03T22:56:36,857 copying tests/data/potassium fluoride, dimer.mop -> build/lib/tests/data 2025-01-03T22:56:36,859 copying tests/data/spc -> build/lib/tests/data 2025-01-03T22:56:36,862 copying tests/data/spc.xyz -> build/lib/tests/data 2025-01-03T22:56:36,864 copying tests/data/tmQM_test.cif -> build/lib/tests/data 2025-01-03T22:56:36,868 copying tests/data/tmQM_test.cif.bz2 -> build/lib/tests/data 2025-01-03T22:56:36,871 copying tests/data/tmQM_test.cif.gz -> build/lib/tests/data 2025-01-03T22:56:36,875 copying tests/data/tmQM_test.xyz.bz2 -> build/lib/tests/data 2025-01-03T22:56:36,879 copying tests/data/tmQM_test.xyz.gz -> build/lib/tests/data 2025-01-03T22:56:36,889 UPDATING build/lib/read_structure_step/_version.py 2025-01-03T22:56:36,891 set build/lib/read_structure_step/_version.py to '2025.1.3.1' 2025-01-03T22:56:36,934 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-03T22:56:36,935 !! 2025-01-03T22:56:36,936 ******************************************************************************** 2025-01-03T22:56:36,937 Please avoid running ``setup.py`` directly. 2025-01-03T22:56:36,938 Instead, use pypa/build, pypa/installer or other 2025-01-03T22:56:36,939 standards-based tools. 2025-01-03T22:56:36,940 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-03T22:56:36,941 ******************************************************************************** 2025-01-03T22:56:36,943 !! 2025-01-03T22:56:36,945 self.initialize_options() 2025-01-03T22:56:36,975 installing to build/bdist.linux-armv7l/wheel 2025-01-03T22:56:36,976 running install 2025-01-03T22:56:37,000 running install_lib 2025-01-03T22:56:37,029 creating build/bdist.linux-armv7l/wheel 2025-01-03T22:56:37,031 creating build/bdist.linux-armv7l/wheel/read_structure_step 2025-01-03T22:56:37,033 creating build/bdist.linux-armv7l/wheel/read_structure_step/data 2025-01-03T22:56:37,034 copying build/lib/read_structure_step/data/references.bib -> build/bdist.linux-armv7l/wheel/./read_structure_step/data 2025-01-03T22:56:37,036 copying build/lib/read_structure_step/write_structure_parameters.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,039 copying build/lib/read_structure_step/read.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,041 copying build/lib/read_structure_step/utils.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,043 copying build/lib/read_structure_step/read_structure_step.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,045 copying build/lib/read_structure_step/read_structure.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,048 copying build/lib/read_structure_step/write_structure.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,050 copying build/lib/read_structure_step/write_structure_step.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,052 copying build/lib/read_structure_step/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,054 copying build/lib/read_structure_step/tk_write_structure.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,056 copying build/lib/read_structure_step/errors.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,058 copying build/lib/read_structure_step/tk_read_structure.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,060 copying build/lib/read_structure_step/_version.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,062 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats 2025-01-03T22:56:37,064 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/cif 2025-01-03T22:56:37,065 copying build/lib/read_structure_step/formats/cif/cif.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/cif 2025-01-03T22:56:37,068 copying build/lib/read_structure_step/formats/cif/mmcif.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/cif 2025-01-03T22:56:37,070 copying build/lib/read_structure_step/formats/cif/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/cif 2025-01-03T22:56:37,072 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/mop 2025-01-03T22:56:37,073 copying build/lib/read_structure_step/formats/mop/obabel.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/mop 2025-01-03T22:56:37,076 copying build/lib/read_structure_step/formats/mop/find_mopac.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/mop 2025-01-03T22:56:37,078 copying build/lib/read_structure_step/formats/mop/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/mop 2025-01-03T22:56:37,080 copying build/lib/read_structure_step/formats/registries.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats 2025-01-03T22:56:37,082 copying build/lib/read_structure_step/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats 2025-01-03T22:56:37,085 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/xyz 2025-01-03T22:56:37,086 copying build/lib/read_structure_step/formats/xyz/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/xyz 2025-01-03T22:56:37,088 copying build/lib/read_structure_step/formats/xyz/xyz.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/xyz 2025-01-03T22:56:37,091 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/mol2 2025-01-03T22:56:37,092 copying build/lib/read_structure_step/formats/mol2/mol2.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/mol2 2025-01-03T22:56:37,094 copying build/lib/read_structure_step/formats/mol2/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/mol2 2025-01-03T22:56:37,096 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/sdf 2025-01-03T22:56:37,097 copying build/lib/read_structure_step/formats/sdf/sdf.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/sdf 2025-01-03T22:56:37,100 copying build/lib/read_structure_step/formats/sdf/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/sdf 2025-01-03T22:56:37,102 copying build/lib/read_structure_step/formats/which.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats 2025-01-03T22:56:37,104 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/smi 2025-01-03T22:56:37,105 copying build/lib/read_structure_step/formats/smi/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/smi 2025-01-03T22:56:37,107 copying build/lib/read_structure_step/formats/smi/smi.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/smi 2025-01-03T22:56:37,110 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/openbabel_io 2025-01-03T22:56:37,111 copying build/lib/read_structure_step/formats/openbabel_io/obabel.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/openbabel_io 2025-01-03T22:56:37,114 copying build/lib/read_structure_step/formats/openbabel_io/__init__.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/openbabel_io 2025-01-03T22:56:37,115 copying build/lib/read_structure_step/formats/openbabel_io/checkers.py -> build/bdist.linux-armv7l/wheel/./read_structure_step/formats/openbabel_io 2025-01-03T22:56:37,117 copying build/lib/read_structure_step/write.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,119 copying build/lib/read_structure_step/read_structure_parameters.py -> build/bdist.linux-armv7l/wheel/./read_structure_step 2025-01-03T22:56:37,122 creating build/bdist.linux-armv7l/wheel/tests 2025-01-03T22:56:37,123 creating build/bdist.linux-armv7l/wheel/tests/data 2025-01-03T22:56:37,125 copying build/lib/tests/data/3TR_model.sdf.gz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,126 copying build/lib/tests/data/lithium fluoride, trimer.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,128 copying build/lib/tests/data/3TR_model.sdf -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,130 copying build/lib/tests/data/acetonitrile.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,131 copying build/lib/tests/data/tmQM_test.xyz.bz2 -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,134 copying build/lib/tests/data/benzene.cif -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,136 copying build/lib/tests/data/3TR_model_MN.xyz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,139 copying build/lib/tests/data/methylidyne.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,141 copying build/lib/tests/data/tmQM_test.cif -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,144 copying build/lib/tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,146 copying build/lib/tests/data/potassium fluoride, dimer.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,147 copying build/lib/tests/data/3TR_model.json -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,149 copying build/lib/tests/data/3TR_model.xyz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,151 copying build/lib/tests/data/spc -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,153 copying build/lib/tests/data/Cr_ACETCR.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,154 copying build/lib/tests/data/3TR_model.mol2 -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,156 copying build/lib/tests/data/tmQM_test.xyz.gz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,159 copying build/lib/tests/data/ABENEB01.cif -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,161 copying build/lib/tests/data/tmQM_test.cif.gz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,164 copying build/lib/tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,166 copying build/lib/tests/data/3TR_model.sdf.bz2 -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,168 copying build/lib/tests/data/spc.xyz -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,170 copying build/lib/tests/data/tmQM_test.cif.bz2 -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,172 copying build/lib/tests/data/3TR_model.pdb -> build/bdist.linux-armv7l/wheel/./tests/data 2025-01-03T22:56:37,174 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,176 copying build/lib/tests/build_filenames.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,178 copying build/lib/tests/mopac_exists.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,179 copying build/lib/tests/test_read_structure_step.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,181 copying build/lib/tests/methylidyne.mop -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,183 copying build/lib/tests/test_cif.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,185 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,189 copying build/lib/tests/test_formats.py -> build/bdist.linux-armv7l/wheel/./tests 2025-01-03T22:56:37,191 running install_egg_info 2025-01-03T22:56:37,233 Copying read_structure_step.egg-info to build/bdist.linux-armv7l/wheel/./read_structure_step-2025.1.3.1-py3.11.egg-info 2025-01-03T22:56:37,254 running install_scripts 2025-01-03T22:56:37,279 creating build/bdist.linux-armv7l/wheel/read_structure_step-2025.1.3.1.dist-info/WHEEL 2025-01-03T22:56:37,282 creating '/tmp/pip-wheel-ckvgtg6e/read_structure_step-2025.1.3.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-03T22:56:37,286 adding 'read_structure_step/__init__.py' 2025-01-03T22:56:37,287 adding 'read_structure_step/_version.py' 2025-01-03T22:56:37,289 adding 'read_structure_step/errors.py' 2025-01-03T22:56:37,292 adding 'read_structure_step/read.py' 2025-01-03T22:56:37,295 adding 'read_structure_step/read_structure.py' 2025-01-03T22:56:37,297 adding 'read_structure_step/read_structure_parameters.py' 2025-01-03T22:56:37,299 adding 'read_structure_step/read_structure_step.py' 2025-01-03T22:56:37,301 adding 'read_structure_step/tk_read_structure.py' 2025-01-03T22:56:37,304 adding 'read_structure_step/tk_write_structure.py' 2025-01-03T22:56:37,306 adding 'read_structure_step/utils.py' 2025-01-03T22:56:37,308 adding 'read_structure_step/write.py' 2025-01-03T22:56:37,311 adding 'read_structure_step/write_structure.py' 2025-01-03T22:56:37,314 adding 'read_structure_step/write_structure_parameters.py' 2025-01-03T22:56:37,315 adding 'read_structure_step/write_structure_step.py' 2025-01-03T22:56:37,319 adding 'read_structure_step/data/references.bib' 2025-01-03T22:56:37,321 adding 'read_structure_step/formats/__init__.py' 2025-01-03T22:56:37,323 adding 'read_structure_step/formats/registries.py' 2025-01-03T22:56:37,325 adding 'read_structure_step/formats/which.py' 2025-01-03T22:56:37,327 adding 'read_structure_step/formats/cif/__init__.py' 2025-01-03T22:56:37,329 adding 'read_structure_step/formats/cif/cif.py' 2025-01-03T22:56:37,331 adding 'read_structure_step/formats/cif/mmcif.py' 2025-01-03T22:56:37,333 adding 'read_structure_step/formats/mol2/__init__.py' 2025-01-03T22:56:37,336 adding 'read_structure_step/formats/mol2/mol2.py' 2025-01-03T22:56:37,340 adding 'read_structure_step/formats/mop/__init__.py' 2025-01-03T22:56:37,342 adding 'read_structure_step/formats/mop/find_mopac.py' 2025-01-03T22:56:37,346 adding 'read_structure_step/formats/mop/obabel.py' 2025-01-03T22:56:37,348 adding 'read_structure_step/formats/openbabel_io/__init__.py' 2025-01-03T22:56:37,349 adding 'read_structure_step/formats/openbabel_io/checkers.py' 2025-01-03T22:56:37,351 adding 'read_structure_step/formats/openbabel_io/obabel.py' 2025-01-03T22:56:37,353 adding 'read_structure_step/formats/sdf/__init__.py' 2025-01-03T22:56:37,355 adding 'read_structure_step/formats/sdf/sdf.py' 2025-01-03T22:56:37,357 adding 'read_structure_step/formats/smi/__init__.py' 2025-01-03T22:56:37,359 adding 'read_structure_step/formats/smi/smi.py' 2025-01-03T22:56:37,361 adding 'read_structure_step/formats/xyz/__init__.py' 2025-01-03T22:56:37,363 adding 'read_structure_step/formats/xyz/xyz.py' 2025-01-03T22:56:37,366 adding 'tests/__init__.py' 2025-01-03T22:56:37,368 adding 'tests/build_filenames.py' 2025-01-03T22:56:37,369 adding 'tests/methylidyne.mop' 2025-01-03T22:56:37,370 adding 'tests/mopac_exists.py' 2025-01-03T22:56:37,372 adding 'tests/test_cif.py' 2025-01-03T22:56:37,373 adding 'tests/test_formats.py' 2025-01-03T22:56:37,374 adding 'tests/test_read_structure_step.py' 2025-01-03T22:56:37,376 adding 'tests/test_utils.py' 2025-01-03T22:56:37,378 adding 'tests/data/3TR_model.json' 2025-01-03T22:56:37,381 adding 'tests/data/3TR_model.mol2' 2025-01-03T22:56:37,382 adding 'tests/data/3TR_model.pdb' 2025-01-03T22:56:37,383 adding 'tests/data/3TR_model.sdf' 2025-01-03T22:56:37,384 adding 'tests/data/3TR_model.sdf.bz2' 2025-01-03T22:56:37,385 adding 'tests/data/3TR_model.sdf.gz' 2025-01-03T22:56:37,387 adding 'tests/data/3TR_model.xyz' 2025-01-03T22:56:37,388 adding 'tests/data/3TR_model_MN.xyz' 2025-01-03T22:56:37,391 adding 'tests/data/ABENEB01.cif' 2025-01-03T22:56:37,393 adding 'tests/data/Cr_ACETCR.mop' 2025-01-03T22:56:37,394 adding 'tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop' 2025-01-03T22:56:37,395 adding 'tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop' 2025-01-03T22:56:37,397 adding 'tests/data/acetonitrile.mop' 2025-01-03T22:56:37,398 adding 'tests/data/benzene.cif' 2025-01-03T22:56:37,400 adding 'tests/data/lithium fluoride, trimer.mop' 2025-01-03T22:56:37,401 adding 'tests/data/methylidyne.mop' 2025-01-03T22:56:37,402 adding 'tests/data/potassium fluoride, dimer.mop' 2025-01-03T22:56:37,403 adding 'tests/data/spc' 2025-01-03T22:56:37,404 adding 'tests/data/spc.xyz' 2025-01-03T22:56:37,408 adding 'tests/data/tmQM_test.cif' 2025-01-03T22:56:37,409 adding 'tests/data/tmQM_test.cif.bz2' 2025-01-03T22:56:37,411 adding 'tests/data/tmQM_test.cif.gz' 2025-01-03T22:56:37,413 adding 'tests/data/tmQM_test.xyz.bz2' 2025-01-03T22:56:37,416 adding 'tests/data/tmQM_test.xyz.gz' 2025-01-03T22:56:37,417 adding 'read_structure_step-2025.1.3.1.dist-info/AUTHORS.rst' 2025-01-03T22:56:37,418 adding 'read_structure_step-2025.1.3.1.dist-info/LICENSE' 2025-01-03T22:56:37,420 adding 'read_structure_step-2025.1.3.1.dist-info/METADATA' 2025-01-03T22:56:37,421 adding 'read_structure_step-2025.1.3.1.dist-info/WHEEL' 2025-01-03T22:56:37,422 adding 'read_structure_step-2025.1.3.1.dist-info/entry_points.txt' 2025-01-03T22:56:37,423 adding 'read_structure_step-2025.1.3.1.dist-info/top_level.txt' 2025-01-03T22:56:37,424 adding 'read_structure_step-2025.1.3.1.dist-info/zip-safe' 2025-01-03T22:56:37,426 adding 'read_structure_step-2025.1.3.1.dist-info/RECORD' 2025-01-03T22:56:37,430 removing build/bdist.linux-armv7l/wheel 2025-01-03T22:56:37,563 Building wheel for read-structure-step (setup.py): finished with status 'done' 2025-01-03T22:56:37,567 Created wheel for read-structure-step: filename=read_structure_step-2025.1.3.1-py2.py3-none-any.whl size=147847 sha256=b7b0cd8ce20fe99677dbd9d00eced21703d4503369939dd947edcbd1a33cfc94 2025-01-03T22:56:37,568 Stored in directory: /tmp/pip-ephem-wheel-cache-pjgyul3d/wheels/04/23/9d/2d646827e463e72e5fbb1ba28d97408561f52b84e0fa0a915a 2025-01-03T22:56:37,582 Successfully built read-structure-step 2025-01-03T22:56:37,590 Removed build tracker: '/tmp/pip-build-tracker-aksy_7lz'