2025-01-06T10:05:10,905 Created temporary directory: /tmp/pip-build-tracker-fpf2u_92
2025-01-06T10:05:10,906 Initialized build tracking at /tmp/pip-build-tracker-fpf2u_92
2025-01-06T10:05:10,907 Created build tracker: /tmp/pip-build-tracker-fpf2u_92
2025-01-06T10:05:10,907 Entered build tracker: /tmp/pip-build-tracker-fpf2u_92
2025-01-06T10:05:10,908 Created temporary directory: /tmp/pip-wheel-yxwg0v94
2025-01-06T10:05:10,912 Created temporary directory: /tmp/pip-ephem-wheel-cache-j_5afgwh
2025-01-06T10:05:10,955 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-06T10:05:10,958 2 location(s) to search for versions of soapy-st:
2025-01-06T10:05:10,958 * https://pypi.org/simple/soapy-st/
2025-01-06T10:05:10,958 * https://www.piwheels.org/simple/soapy-st/
2025-01-06T10:05:10,959 Fetching project page and analyzing links: https://pypi.org/simple/soapy-st/
2025-01-06T10:05:10,959 Getting page https://pypi.org/simple/soapy-st/
2025-01-06T10:05:10,961 Found index url https://pypi.org/simple/
2025-01-06T10:05:11,182 Fetched page https://pypi.org/simple/soapy-st/ as application/vnd.pypi.simple.v1+json
2025-01-06T10:05:11,186   Found link https://files.pythonhosted.org/packages/26/ef/07d2cc6a416a2962d02658155c1a0ba11bfc0f294a28701a880888aadebf/SOAPy-st-0.1.0.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.0
2025-01-06T10:05:11,187   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a4/47/c919aacc1a29a1509890a939821621d8bfea16fc15efdd1b845830b3c0ea/SOAPy_st-0.1.0-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,188   Found link https://files.pythonhosted.org/packages/6a/c4/2aae67cff1af7affce1ecdf80fa2f0aeca0cc34c34d524f690d80c79662e/SOAPy-st-0.1.2.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.2
2025-01-06T10:05:11,189   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/f5/cc/585b624914621cbff914d1d73e94a392ad0631a17a55ef8b9025ff9d7bde/SOAPy_st-0.1.2-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,190   Found link https://files.pythonhosted.org/packages/14/bf/41fa18c6356fa85d7e53bc8f384c6169a613ff8074cd6fe26d9734bdb258/SOAPy-st-0.1.3.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.3
2025-01-06T10:05:11,190   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/01/76/0370ef54a91fc2dacec2581cdbe1cecef35f9880afd556ba974b92726b02/SOAPy_st-0.1.3-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,191   Found link https://files.pythonhosted.org/packages/44/90/046401a8b275c9ccefb48083c6b59ae71ea2146fac4f85ddf38e92dcbc48/SOAPy-st-0.1.4.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.4
2025-01-06T10:05:11,192   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/a7/3a/827460d431b0d1718673606675e4bf23b17eaae4b26be66803c459a93228/SOAPy_st-0.1.4-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,193   Found link https://files.pythonhosted.org/packages/36/8c/aad31bbb5ad56da395c7761983c7425dd0fb7556d10d3d9b9491267717b2/SOAPy-st-0.1.5.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.5
2025-01-06T10:05:11,193   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/c9/d8/42a67874b6dae28b6fb7695a3ba9d8e876a2b979836c9ce5bc11542b7ce6/SOAPy_st-0.1.5-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,194   Found link https://files.pythonhosted.org/packages/b1/bc/b92228426416290c0fbf49acfe19da61a1d519170ba73f37a4d40abec2e0/SOAPy-st-0.1.6.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.6
2025-01-06T10:05:11,195   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/3b/75/d09025b4ebab5c67f5099748128897ac2f03fe137394ee68c266e271ddb5/SOAPy_st-0.1.6-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,195   Skipping link: No binaries permitted for soapy-st: https://files.pythonhosted.org/packages/1b/e2/988a827aec3aaec819c8ae2818c0c61dece530373490005a31f390559642/SOAPy_st-0.1.7-py3-none-any.whl (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9)
2025-01-06T10:05:11,196   Found link https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz (from https://pypi.org/simple/soapy-st/) (requires-python:>=3.9), version: 0.1.7
2025-01-06T10:05:11,197 Fetching project page and analyzing links: https://www.piwheels.org/simple/soapy-st/
2025-01-06T10:05:11,198 Getting page https://www.piwheels.org/simple/soapy-st/
2025-01-06T10:05:11,199 Found index url https://www.piwheels.org/simple/
2025-01-06T10:05:11,372 Fetched page https://www.piwheels.org/simple/soapy-st/ as text/html
2025-01-06T10:05:11,373 Skipping link: not a file: https://www.piwheels.org/simple/soapy-st/
2025-01-06T10:05:11,374 Skipping link: not a file: https://pypi.org/simple/soapy-st/
2025-01-06T10:05:11,392 Given no hashes to check 1 links for project 'soapy-st': discarding no candidates
2025-01-06T10:05:11,394 Collecting soapy-st==0.1.7
2025-01-06T10:05:11,396   Created temporary directory: /tmp/pip-unpack-9y5f0k_3
2025-01-06T10:05:11,611   Downloading SOAPy_st-0.1.7.tar.gz (218 kB)
2025-01-06T10:05:11,861   Added soapy-st==0.1.7 from https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-fpf2u_92'
2025-01-06T10:05:11,863   Running setup.py (path:/tmp/pip-wheel-yxwg0v94/soapy-st_226b51be93184a5780b402b0ba2ac36f/setup.py) egg_info for package soapy-st
2025-01-06T10:05:11,864   Created temporary directory: /tmp/pip-pip-egg-info-nf_8e9sx
2025-01-06T10:05:11,864   Preparing metadata (setup.py): started
2025-01-06T10:05:11,866   Running command python setup.py egg_info
2025-01-06T10:05:12,421   /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-yxwg0v94/soapy-st_226b51be93184a5780b402b0ba2ac36f/Readme.md' cannot be found
2025-01-06T10:05:12,421     return '\n'.join(
2025-01-06T10:05:13,267   running egg_info
2025-01-06T10:05:13,297   creating /tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info
2025-01-06T10:05:13,299   writing /tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/PKG-INFO
2025-01-06T10:05:13,303   writing dependency_links to /tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/dependency_links.txt
2025-01-06T10:05:13,306   writing requirements to /tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/requires.txt
2025-01-06T10:05:13,307   writing top-level names to /tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/top_level.txt
2025-01-06T10:05:13,309   writing manifest file '/tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/SOURCES.txt'
2025-01-06T10:05:13,412   reading manifest file '/tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/SOURCES.txt'
2025-01-06T10:05:13,413   reading manifest template 'MANIFEST.in'
2025-01-06T10:05:13,415   adding license file 'LICENSE.md'
2025-01-06T10:05:13,419   writing manifest file '/tmp/pip-pip-egg-info-nf_8e9sx/SOAPy_st.egg-info/SOURCES.txt'
2025-01-06T10:05:13,529   Preparing metadata (setup.py): finished with status 'done'
2025-01-06T10:05:13,533   Source in /tmp/pip-wheel-yxwg0v94/soapy-st_226b51be93184a5780b402b0ba2ac36f has version 0.1.7, which satisfies requirement soapy-st==0.1.7 from https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz
2025-01-06T10:05:13,535   Removed soapy-st==0.1.7 from https://files.pythonhosted.org/packages/f5/cd/2a53e3299826d82f26b446ff0b33755d11f05cbac8e7b3deef557408dd7b/SOAPy_st-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-fpf2u_92'
2025-01-06T10:05:13,548 Created temporary directory: /tmp/pip-unpack-jat7a9eq
2025-01-06T10:05:13,551 Created temporary directory: /tmp/pip-unpack-dc42zh3u
2025-01-06T10:05:13,553 Building wheels for collected packages: soapy-st
2025-01-06T10:05:13,563   Created temporary directory: /tmp/pip-wheel-lkw8rivf
2025-01-06T10:05:13,564   Building wheel for soapy-st (setup.py): started
2025-01-06T10:05:13,565   Destination directory: /tmp/pip-wheel-lkw8rivf
2025-01-06T10:05:13,566   Running command python setup.py bdist_wheel
2025-01-06T10:05:14,144   /usr/local/lib/python3.11/dist-packages/setuptools/config/expand.py:124: SetuptoolsWarning: File '/tmp/pip-wheel-yxwg0v94/soapy-st_226b51be93184a5780b402b0ba2ac36f/Readme.md' cannot be found
2025-01-06T10:05:14,144     return '\n'.join(
2025-01-06T10:05:14,780   running bdist_wheel
2025-01-06T10:05:14,924   running build
2025-01-06T10:05:14,925   running build_py
2025-01-06T10:05:14,957   creating build/lib/SOAPy_st
2025-01-06T10:05:14,966   copying SOAPy_st/_compat.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,969   copying SOAPy_st/_metadata.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,971   copying SOAPy_st/_docs.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,973   copying SOAPy_st/utils.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,976   copying SOAPy_st/_settings.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,979   copying SOAPy_st/__init__.py -> build/lib/SOAPy_st
2025-01-06T10:05:14,982   creating build/lib/SOAPy_st/pl
2025-01-06T10:05:14,983   copying SOAPy_st/pl/_niche.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:14,987   copying SOAPy_st/pl/_ccc.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:14,995   copying SOAPy_st/pl/_tensor.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,010   copying SOAPy_st/pl/_neighborhood.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,016   copying SOAPy_st/pl/utils.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,018   copying SOAPy_st/pl/_color.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,020   copying SOAPy_st/pl/_heatmap.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,023   copying SOAPy_st/pl/__init__.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,025   copying SOAPy_st/pl/_show.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,028   copying SOAPy_st/pl/_chord.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,030   copying SOAPy_st/pl/_tendency.py -> build/lib/SOAPy_st/pl
2025-01-06T10:05:15,034   creating build/lib/SOAPy_st/pp
2025-01-06T10:05:15,035   copying SOAPy_st/pp/build_network.py -> build/lib/SOAPy_st/pp
2025-01-06T10:05:15,038   copying SOAPy_st/pp/all2adata.py -> build/lib/SOAPy_st/pp
2025-01-06T10:05:15,041   copying SOAPy_st/pp/utils.py -> build/lib/SOAPy_st/pp
2025-01-06T10:05:15,267   copying SOAPy_st/pp/__init__.py -> build/lib/SOAPy_st/pp
2025-01-06T10:05:15,270   creating build/lib/SOAPy_st/tl
2025-01-06T10:05:15,271   copying SOAPy_st/tl/_ccc.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,274   copying SOAPy_st/tl/_interaction.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,277   copying SOAPy_st/tl/_var_genes.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,280   copying SOAPy_st/tl/_tensor.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,283   copying SOAPy_st/tl/_mask.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,286   copying SOAPy_st/tl/utils.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,289   copying SOAPy_st/tl/_domain.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,298   copying SOAPy_st/tl/__init__.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,307   copying SOAPy_st/tl/_tendency.py -> build/lib/SOAPy_st/tl
2025-01-06T10:05:15,317   creating build/lib/SOAPy_st/tl/other_package_without_pip
2025-01-06T10:05:15,318   copying SOAPy_st/tl/other_package_without_pip/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip
2025-01-06T10:05:15,324   creating build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,326   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,330   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,333   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,336   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,339   copying SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,342   creating build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,344   copying SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,347   copying SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,352   copying SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,360   copying SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,366   copying SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,369   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-06T10:05:15,370   copying SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-06T10:05:15,373   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,374   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,377   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,379   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,381   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,384   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,388   copying SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,402   creating build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,409   copying SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,422   copying SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,427   running egg_info
2025-01-06T10:05:15,464   writing SOAPy_st.egg-info/PKG-INFO
2025-01-06T10:05:15,474   writing dependency_links to SOAPy_st.egg-info/dependency_links.txt
2025-01-06T10:05:15,481   writing requirements to SOAPy_st.egg-info/requires.txt
2025-01-06T10:05:15,483   writing top-level names to SOAPy_st.egg-info/top_level.txt
2025-01-06T10:05:15,554   reading manifest file 'SOAPy_st.egg-info/SOURCES.txt'
2025-01-06T10:05:15,563   reading manifest template 'MANIFEST.in'
2025-01-06T10:05:15,565   adding license file 'LICENSE.md'
2025-01-06T10:05:15,571   writing manifest file 'SOAPy_st.egg-info/SOURCES.txt'
2025-01-06T10:05:15,573   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'SOAPy_st.tl.datasets' is absent from the `packages` configuration.
2025-01-06T10:05:15,574   !!

2025-01-06T10:05:15,575           ********************************************************************************
2025-01-06T10:05:15,576           ############################
2025-01-06T10:05:15,576           # Package would be ignored #
2025-01-06T10:05:15,577           ############################
2025-01-06T10:05:15,577           Python recognizes 'SOAPy_st.tl.datasets' as an importable package[^1],
2025-01-06T10:05:15,578           but it is absent from setuptools' `packages` configuration.

2025-01-06T10:05:15,579           This leads to an ambiguous overall configuration. If you want to distribute this
2025-01-06T10:05:15,579           package, please make sure that 'SOAPy_st.tl.datasets' is explicitly added
2025-01-06T10:05:15,579           to the `packages` configuration field.

2025-01-06T10:05:15,580           Alternatively, you can also rely on setuptools' discovery methods
2025-01-06T10:05:15,581           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-01-06T10:05:15,581           instead of `find_packages(...)`/`find:`).

2025-01-06T10:05:15,582           You can read more about "package discovery" on setuptools documentation page:

2025-01-06T10:05:15,583           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-01-06T10:05:15,584           If you don't want 'SOAPy_st.tl.datasets' to be distributed and are
2025-01-06T10:05:15,584           already explicitly excluding 'SOAPy_st.tl.datasets' via
2025-01-06T10:05:15,585           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-01-06T10:05:15,585           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-01-06T10:05:15,586           combination with a more fine grained `package-data` configuration.

2025-01-06T10:05:15,587           You can read more about "package data files" on setuptools documentation page:

2025-01-06T10:05:15,588           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-01-06T10:05:15,598           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-01-06T10:05:15,599                 even if it does not contain any `.py` files.
2025-01-06T10:05:15,599                 On the other hand, currently there is no concept of package data
2025-01-06T10:05:15,600                 directory, all directories are treated like packages.
2025-01-06T10:05:15,601           ********************************************************************************

2025-01-06T10:05:15,602   !!
2025-01-06T10:05:15,603     check.warn(importable)
2025-01-06T10:05:15,605   creating build/lib/SOAPy_st/tl/datasets
2025-01-06T10:05:15,609   copying SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets
2025-01-06T10:05:15,610   copying SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/lib/SOAPy_st/tl/datasets
2025-01-06T10:05:15,644   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-06T10:05:15,645   !!

2025-01-06T10:05:15,646           ********************************************************************************
2025-01-06T10:05:15,647           Please avoid running ``setup.py`` directly.
2025-01-06T10:05:15,647           Instead, use pypa/build, pypa/installer or other
2025-01-06T10:05:15,648           standards-based tools.

2025-01-06T10:05:15,649           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-06T10:05:15,650           ********************************************************************************

2025-01-06T10:05:15,651   !!
2025-01-06T10:05:15,652     self.initialize_options()
2025-01-06T10:05:15,674   installing to build/bdist.linux-armv7l/wheel
2025-01-06T10:05:15,675   running install
2025-01-06T10:05:15,700   running install_lib
2025-01-06T10:05:15,728   creating build/bdist.linux-armv7l/wheel
2025-01-06T10:05:15,730   creating build/bdist.linux-armv7l/wheel/SOAPy_st
2025-01-06T10:05:15,732   creating build/bdist.linux-armv7l/wheel/SOAPy_st/pl
2025-01-06T10:05:15,734   copying build/lib/SOAPy_st/pl/_niche.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,737   copying build/lib/SOAPy_st/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,740   copying build/lib/SOAPy_st/pl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,743   copying build/lib/SOAPy_st/pl/_neighborhood.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,745   copying build/lib/SOAPy_st/pl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,747   copying build/lib/SOAPy_st/pl/_color.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,749   copying build/lib/SOAPy_st/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,752   copying build/lib/SOAPy_st/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,754   copying build/lib/SOAPy_st/pl/_show.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,756   copying build/lib/SOAPy_st/pl/_chord.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,759   copying build/lib/SOAPy_st/pl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pl
2025-01-06T10:05:15,763   creating build/bdist.linux-armv7l/wheel/SOAPy_st/pp
2025-01-06T10:05:15,764   copying build/lib/SOAPy_st/pp/build_network.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-06T10:05:15,767   copying build/lib/SOAPy_st/pp/all2adata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-06T10:05:15,770   copying build/lib/SOAPy_st/pp/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-06T10:05:15,773   copying build/lib/SOAPy_st/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/pp
2025-01-06T10:05:15,775   copying build/lib/SOAPy_st/_compat.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,778   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl
2025-01-06T10:05:15,780   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip
2025-01-06T10:05:15,783   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,784   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,787   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,791   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,793   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,796   copying build/lib/SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/STAGATE_pyG
2025-01-06T10:05:15,799   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,801   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,804   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,806   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,809   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,812   copying build/lib/SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/GraphST
2025-01-06T10:05:15,816   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit
2025-01-06T10:05:15,819   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,821   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,824   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,826   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,829   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,831   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,833   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/_utils
2025-01-06T10:05:15,836   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,837   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,841   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit/tools
2025-01-06T10:05:15,843   copying build/lib/SOAPy_st/tl/other_package_without_pip/scanit/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip/scanit
2025-01-06T10:05:15,845   copying build/lib/SOAPy_st/tl/other_package_without_pip/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/other_package_without_pip
2025-01-06T10:05:15,847   copying build/lib/SOAPy_st/tl/_ccc.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,851   copying build/lib/SOAPy_st/tl/_interaction.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,854   creating build/bdist.linux-armv7l/wheel/SOAPy_st/tl/datasets
2025-01-06T10:05:15,856   copying build/lib/SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets
2025-01-06T10:05:15,868   copying build/lib/SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl/datasets
2025-01-06T10:05:15,879   copying build/lib/SOAPy_st/tl/_var_genes.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,881   copying build/lib/SOAPy_st/tl/_tensor.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,884   copying build/lib/SOAPy_st/tl/_mask.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,886   copying build/lib/SOAPy_st/tl/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,888   copying build/lib/SOAPy_st/tl/_domain.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,891   copying build/lib/SOAPy_st/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,893   copying build/lib/SOAPy_st/tl/_tendency.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st/tl
2025-01-06T10:05:15,896   copying build/lib/SOAPy_st/_metadata.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,898   copying build/lib/SOAPy_st/_docs.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,900   copying build/lib/SOAPy_st/utils.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,902   copying build/lib/SOAPy_st/_settings.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,904   copying build/lib/SOAPy_st/__init__.py -> build/bdist.linux-armv7l/wheel/./SOAPy_st
2025-01-06T10:05:15,906   running install_egg_info
2025-01-06T10:05:15,947   Copying SOAPy_st.egg-info to build/bdist.linux-armv7l/wheel/./SOAPy_st-0.1.7-py3.11.egg-info
2025-01-06T10:05:15,956   running install_scripts
2025-01-06T10:05:15,976   creating build/bdist.linux-armv7l/wheel/SOAPy_st-0.1.7.dist-info/WHEEL
2025-01-06T10:05:15,978   creating '/tmp/pip-wheel-lkw8rivf/SOAPy_st-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-06T10:05:15,981   adding 'SOAPy_st/__init__.py'
2025-01-06T10:05:15,982   adding 'SOAPy_st/_compat.py'
2025-01-06T10:05:15,984   adding 'SOAPy_st/_docs.py'
2025-01-06T10:05:15,985   adding 'SOAPy_st/_metadata.py'
2025-01-06T10:05:15,987   adding 'SOAPy_st/_settings.py'
2025-01-06T10:05:15,989   adding 'SOAPy_st/utils.py'
2025-01-06T10:05:15,991   adding 'SOAPy_st/pl/__init__.py'
2025-01-06T10:05:15,995   adding 'SOAPy_st/pl/_ccc.py'
2025-01-06T10:05:15,997   adding 'SOAPy_st/pl/_chord.py'
2025-01-06T10:05:15,998   adding 'SOAPy_st/pl/_color.py'
2025-01-06T10:05:16,000   adding 'SOAPy_st/pl/_heatmap.py'
2025-01-06T10:05:16,002   adding 'SOAPy_st/pl/_neighborhood.py'
2025-01-06T10:05:16,004   adding 'SOAPy_st/pl/_niche.py'
2025-01-06T10:05:16,006   adding 'SOAPy_st/pl/_show.py'
2025-01-06T10:05:16,008   adding 'SOAPy_st/pl/_tendency.py'
2025-01-06T10:05:16,010   adding 'SOAPy_st/pl/_tensor.py'
2025-01-06T10:05:16,011   adding 'SOAPy_st/pl/utils.py'
2025-01-06T10:05:16,013   adding 'SOAPy_st/pp/__init__.py'
2025-01-06T10:05:16,016   adding 'SOAPy_st/pp/all2adata.py'
2025-01-06T10:05:16,018   adding 'SOAPy_st/pp/build_network.py'
2025-01-06T10:05:16,022   adding 'SOAPy_st/pp/utils.py'
2025-01-06T10:05:16,025   adding 'SOAPy_st/tl/__init__.py'
2025-01-06T10:05:16,031   adding 'SOAPy_st/tl/_ccc.py'
2025-01-06T10:05:16,034   adding 'SOAPy_st/tl/_domain.py'
2025-01-06T10:05:16,037   adding 'SOAPy_st/tl/_interaction.py'
2025-01-06T10:05:16,039   adding 'SOAPy_st/tl/_mask.py'
2025-01-06T10:05:16,043   adding 'SOAPy_st/tl/_tendency.py'
2025-01-06T10:05:16,045   adding 'SOAPy_st/tl/_tensor.py'
2025-01-06T10:05:16,047   adding 'SOAPy_st/tl/_var_genes.py'
2025-01-06T10:05:16,049   adding 'SOAPy_st/tl/utils.py'
2025-01-06T10:05:16,083   adding 'SOAPy_st/tl/datasets/Human-2020-Jin-LR-pairs.csv'
2025-01-06T10:05:16,120   adding 'SOAPy_st/tl/datasets/Mouse-2020-Jin-LR-pairs.csv'
2025-01-06T10:05:16,125   adding 'SOAPy_st/tl/other_package_without_pip/__init__.py'
2025-01-06T10:05:16,128   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/GraphST.py'
2025-01-06T10:05:16,129   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/__init__.py'
2025-01-06T10:05:16,131   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/model.py'
2025-01-06T10:05:16,133   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/preprocess.py'
2025-01-06T10:05:16,134   adding 'SOAPy_st/tl/other_package_without_pip/GraphST/utils.py'
2025-01-06T10:05:16,136   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/STAGATE.py'
2025-01-06T10:05:16,138   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/Train_STAGATE.py'
2025-01-06T10:05:16,139   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/__init__.py'
2025-01-06T10:05:16,141   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/gat_conv.py'
2025-01-06T10:05:16,142   adding 'SOAPy_st/tl/other_package_without_pip/STAGATE_pyG/utils.py'
2025-01-06T10:05:16,144   adding 'SOAPy_st/tl/other_package_without_pip/scanit/__init__.py'
2025-01-06T10:05:16,146   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/__init__.py'
2025-01-06T10:05:16,148   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_alpha.py'
2025-01-06T10:05:16,150   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_dgi.py'
2025-01-06T10:05:16,151   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_gae.py'
2025-01-06T10:05:16,153   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_knn.py'
2025-01-06T10:05:16,154   adding 'SOAPy_st/tl/other_package_without_pip/scanit/_utils/_scale_estimation.py'
2025-01-06T10:05:16,157   adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/__init__.py'
2025-01-06T10:05:16,159   adding 'SOAPy_st/tl/other_package_without_pip/scanit/tools/_scanit_representation.py'
2025-01-06T10:05:16,166   adding 'SOAPy_st-0.1.7.dist-info/LICENSE.md'
2025-01-06T10:05:16,167   adding 'SOAPy_st-0.1.7.dist-info/METADATA'
2025-01-06T10:05:16,169   adding 'SOAPy_st-0.1.7.dist-info/WHEEL'
2025-01-06T10:05:16,170   adding 'SOAPy_st-0.1.7.dist-info/top_level.txt'
2025-01-06T10:05:16,171   adding 'SOAPy_st-0.1.7.dist-info/RECORD'
2025-01-06T10:05:16,177   removing build/bdist.linux-armv7l/wheel
2025-01-06T10:05:16,319   Building wheel for soapy-st (setup.py): finished with status 'done'
2025-01-06T10:05:16,326   Created wheel for soapy-st: filename=SOAPy_st-0.1.7-py3-none-any.whl size=242835 sha256=47ef0b65f7e6470511a5ef5fd5fe2a052d619946cfd5235ced410e7a90a41e1e
2025-01-06T10:05:16,328   Stored in directory: /tmp/pip-ephem-wheel-cache-j_5afgwh/wheels/71/5e/74/a638b910c56891cfbe524242a05d31c4db9fd4ff4bb4a79918
2025-01-06T10:05:16,346 Successfully built soapy-st
2025-01-06T10:05:16,359 Removed build tracker: '/tmp/pip-build-tracker-fpf2u_92'