2025-01-06T16:31:09,501 Created temporary directory: /tmp/pip-build-tracker-i5m0l8vx
2025-01-06T16:31:09,503 Initialized build tracking at /tmp/pip-build-tracker-i5m0l8vx
2025-01-06T16:31:09,503 Created build tracker: /tmp/pip-build-tracker-i5m0l8vx
2025-01-06T16:31:09,504 Entered build tracker: /tmp/pip-build-tracker-i5m0l8vx
2025-01-06T16:31:09,505 Created temporary directory: /tmp/pip-wheel-sv6mqokb
2025-01-06T16:31:09,509 Created temporary directory: /tmp/pip-ephem-wheel-cache-4x8t2_d2
2025-01-06T16:31:09,557 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-06T16:31:09,559 2 location(s) to search for versions of rsalor:
2025-01-06T16:31:09,559 * https://pypi.org/simple/rsalor/
2025-01-06T16:31:09,559 * https://www.piwheels.org/simple/rsalor/
2025-01-06T16:31:09,560 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-01-06T16:31:09,561 Getting page https://pypi.org/simple/rsalor/
2025-01-06T16:31:09,562 Found index url https://pypi.org/simple/
2025-01-06T16:31:09,706 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-01-06T16:31:09,709   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-01-06T16:31:09,710   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-01-06T16:31:09,711   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-01-06T16:31:09,712   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-01-06T16:31:09,713   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-01-06T16:31:09,714   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-01-06T16:31:09,715 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-01-06T16:31:09,715 Getting page https://www.piwheels.org/simple/rsalor/
2025-01-06T16:31:09,717 Found index url https://www.piwheels.org/simple/
2025-01-06T16:31:09,887 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-01-06T16:31:09,891   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,891   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,892   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,892   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,893   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,894   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,894   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,895   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T16:31:09,895 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-01-06T16:31:09,896 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-01-06T16:31:09,915 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-01-06T16:31:09,917 Collecting rsalor==1.0.5
2025-01-06T16:31:09,919   Created temporary directory: /tmp/pip-unpack-7fzaej1d
2025-01-06T16:31:10,135   Downloading rsalor-1.0.5.tar.gz (48 kB)
2025-01-06T16:31:10,250   Added rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-i5m0l8vx'
2025-01-06T16:31:10,252   Running setup.py (path:/tmp/pip-wheel-sv6mqokb/rsalor_77997912b2534d89bc68e6c396ebc420/setup.py) egg_info for package rsalor
2025-01-06T16:31:10,253   Created temporary directory: /tmp/pip-pip-egg-info-ni1rdtxy
2025-01-06T16:31:10,254   Preparing metadata (setup.py): started
2025-01-06T16:31:10,255   Running command python setup.py egg_info
2025-01-06T16:31:11,357   running egg_info
2025-01-06T16:31:11,384   creating /tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info
2025-01-06T16:31:11,386   writing /tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/PKG-INFO
2025-01-06T16:31:11,389   writing dependency_links to /tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/dependency_links.txt
2025-01-06T16:31:11,391   writing requirements to /tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/requires.txt
2025-01-06T16:31:11,392   writing top-level names to /tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/top_level.txt
2025-01-06T16:31:11,394   writing manifest file '/tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/SOURCES.txt'
2025-01-06T16:31:11,520   reading manifest file '/tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/SOURCES.txt'
2025-01-06T16:31:11,522   reading manifest template 'MANIFEST.in'
2025-01-06T16:31:11,531   warning: no previously-included files found matching 'fig/*'
2025-01-06T16:31:11,532   warning: no previously-included files found matching 'src/*'
2025-01-06T16:31:11,532   warning: no previously-included files found matching 'tmp/*'
2025-01-06T16:31:11,533   warning: no previously-included files found matching '0_*'
2025-01-06T16:31:11,533   warning: no previously-included files found matching 'conda-env.yml'
2025-01-06T16:31:11,534   warning: no previously-included files found matching 'test_data/*'
2025-01-06T16:31:11,535   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-06T16:31:11,536   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-06T16:31:11,536   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-06T16:31:11,537   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-06T16:31:11,538   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-06T16:31:11,539   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-06T16:31:11,539   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-01-06T16:31:11,540   adding license file 'LICENCE'
2025-01-06T16:31:11,543   writing manifest file '/tmp/pip-pip-egg-info-ni1rdtxy/rsalor.egg-info/SOURCES.txt'
2025-01-06T16:31:11,652   Preparing metadata (setup.py): finished with status 'done'
2025-01-06T16:31:11,656   Source in /tmp/pip-wheel-sv6mqokb/rsalor_77997912b2534d89bc68e6c396ebc420 has version 1.0.5, which satisfies requirement rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz
2025-01-06T16:31:11,657   Removed rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-i5m0l8vx'
2025-01-06T16:31:11,663 Created temporary directory: /tmp/pip-unpack-_4ap5nfc
2025-01-06T16:31:11,664 Created temporary directory: /tmp/pip-unpack-hvq1w0e6
2025-01-06T16:31:11,664 Building wheels for collected packages: rsalor
2025-01-06T16:31:11,669   Created temporary directory: /tmp/pip-wheel-4f4jz1ju
2025-01-06T16:31:11,670   Building wheel for rsalor (setup.py): started
2025-01-06T16:31:11,671   Destination directory: /tmp/pip-wheel-4f4jz1ju
2025-01-06T16:31:11,672   Running command python setup.py bdist_wheel
2025-01-06T16:31:12,701   running bdist_wheel
2025-01-06T16:31:12,841   running build
2025-01-06T16:31:12,842   running build_py
2025-01-06T16:31:12,873   creating build/lib.linux-armv7l-cpython-311/rsalor
2025-01-06T16:31:12,875   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-06T16:31:12,879   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-06T16:31:12,881   creating build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,882   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,885   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,887   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,889   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,892   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-06T16:31:12,895   creating build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,896   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,898   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,901   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,903   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,906   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,908   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-06T16:31:12,910   creating build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-06T16:31:12,911   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-06T16:31:12,914   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-06T16:31:12,916   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-06T16:31:12,918   creating build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,920   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,922   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,924   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,926   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,928   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-06T16:31:12,931   creating build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-06T16:31:12,932   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-06T16:31:12,934   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-06T16:31:12,942   running build_ext
2025-01-06T16:31:13,558   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-01-06T16:31:13,559   creating build/temp.linux-armv7l-cpython-311/rsalor/weights
2025-01-06T16:31:13,561   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp
2025-01-06T16:31:15,002   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-01-06T16:31:15,002   rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-01-06T16:31:15,003      48 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-01-06T16:31:15,004         |                    ~~^~~~~~~~~~~
2025-01-06T16:31:15,449   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp
2025-01-06T16:31:16,986   rsalor/weights/msa.cpp: In member function ‘std::vector<float> MSA::computeWeights()’:
2025-01-06T16:31:16,987   rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable]
2025-01-06T16:31:16,987     115 |         auto num_threads = this->num_threads;
2025-01-06T16:31:16,988         |              ^~~~~~~~~~~
2025-01-06T16:31:19,184   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -fopenmp -O3
2025-01-06T16:31:19,488   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-06T16:31:19,489   !!

2025-01-06T16:31:19,490           ********************************************************************************
2025-01-06T16:31:19,490           Please avoid running ``setup.py`` directly.
2025-01-06T16:31:19,491           Instead, use pypa/build, pypa/installer or other
2025-01-06T16:31:19,492           standards-based tools.

2025-01-06T16:31:19,493           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-06T16:31:19,493           ********************************************************************************

2025-01-06T16:31:19,494   !!
2025-01-06T16:31:19,495     self.initialize_options()
2025-01-06T16:31:19,520   installing to build/bdist.linux-armv7l/wheel
2025-01-06T16:31:19,521   running install
2025-01-06T16:31:19,546   running install_lib
2025-01-06T16:31:19,575   creating build/bdist.linux-armv7l/wheel
2025-01-06T16:31:19,577   creating build/bdist.linux-armv7l/wheel/rsalor
2025-01-06T16:31:19,579   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-01-06T16:31:19,581   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T16:31:19,584   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T16:31:19,586   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T16:31:19,589   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T16:31:19,591   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T16:31:19,594   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-01-06T16:31:19,596   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,598   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,601   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,604   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,607   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,609   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T16:31:19,612   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-01-06T16:31:19,614   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T16:31:19,617   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T16:31:19,619   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T16:31:19,622   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-01-06T16:31:19,623   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T16:31:19,626   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T16:31:19,628   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T16:31:19,630   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T16:31:19,633   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T16:31:19,636   copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-06T16:31:19,639   copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-06T16:31:19,642   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-01-06T16:31:19,644   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T16:31:19,655   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T16:31:19,658   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T16:31:19,660   running install_egg_info
2025-01-06T16:31:19,695   running egg_info
2025-01-06T16:31:19,722   writing rsalor.egg-info/PKG-INFO
2025-01-06T16:31:19,726   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-01-06T16:31:19,728   writing requirements to rsalor.egg-info/requires.txt
2025-01-06T16:31:19,729   writing top-level names to rsalor.egg-info/top_level.txt
2025-01-06T16:31:19,768   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-06T16:31:19,773   reading manifest template 'MANIFEST.in'
2025-01-06T16:31:19,781   warning: no previously-included files found matching 'fig/*'
2025-01-06T16:31:19,782   warning: no previously-included files found matching 'src/*'
2025-01-06T16:31:19,782   warning: no previously-included files found matching 'tmp/*'
2025-01-06T16:31:19,783   warning: no previously-included files found matching '0_*'
2025-01-06T16:31:19,783   warning: no previously-included files found matching 'conda-env.yml'
2025-01-06T16:31:19,784   warning: no previously-included files found matching 'test_data/*'
2025-01-06T16:31:19,785   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-06T16:31:19,785   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-06T16:31:19,786   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-06T16:31:19,787   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-06T16:31:19,787   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-06T16:31:19,788   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-06T16:31:19,789   adding license file 'LICENCE'
2025-01-06T16:31:19,793   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-06T16:31:19,794   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.5-py3.11.egg-info
2025-01-06T16:31:19,805   running install_scripts
2025-01-06T16:31:19,863   creating build/bdist.linux-armv7l/wheel/rsalor-1.0.5.dist-info/WHEEL
2025-01-06T16:31:19,865   creating '/tmp/pip-wheel-4f4jz1ju/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-06T16:31:19,868   adding 'rsalor/__init__.py'
2025-01-06T16:31:19,872   adding 'rsalor/msa.py'
2025-01-06T16:31:19,874   adding 'rsalor/rsa/__init__.py'
2025-01-06T16:31:19,876   adding 'rsalor/rsa/rsa_biopython.py'
2025-01-06T16:31:19,878   adding 'rsalor/rsa/rsa_dssp.py'
2025-01-06T16:31:19,879   adding 'rsalor/rsa/rsa_music.py'
2025-01-06T16:31:19,881   adding 'rsalor/rsa/rsa_solver.py'
2025-01-06T16:31:19,883   adding 'rsalor/sequence/__init__.py'
2025-01-06T16:31:19,885   adding 'rsalor/sequence/amino_acid.py'
2025-01-06T16:31:19,887   adding 'rsalor/sequence/fasta_reader.py'
2025-01-06T16:31:19,888   adding 'rsalor/sequence/mutation.py'
2025-01-06T16:31:19,890   adding 'rsalor/sequence/pairwise_alignment.py'
2025-01-06T16:31:19,892   adding 'rsalor/sequence/sequence.py'
2025-01-06T16:31:19,893   adding 'rsalor/structure/__init__.py'
2025-01-06T16:31:19,894   adding 'rsalor/structure/residue.py'
2025-01-06T16:31:19,896   adding 'rsalor/structure/structure.py'
2025-01-06T16:31:19,899   adding 'rsalor/utils/CSV.py'
2025-01-06T16:31:19,901   adding 'rsalor/utils/__init__.py'
2025-01-06T16:31:19,902   adding 'rsalor/utils/ali_to_fasta.py'
2025-01-06T16:31:19,903   adding 'rsalor/utils/logger.py'
2025-01-06T16:31:19,905   adding 'rsalor/utils/utils.py'
2025-01-06T16:31:19,906   adding 'rsalor/weights/__init__.py'
2025-01-06T16:31:19,908   adding 'rsalor/weights/compute_weights.py'
2025-01-06T16:31:19,980   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so'
2025-01-06T16:31:19,985   adding 'rsalor-1.0.5.dist-info/LICENCE'
2025-01-06T16:31:19,986   adding 'rsalor-1.0.5.dist-info/METADATA'
2025-01-06T16:31:19,987   adding 'rsalor-1.0.5.dist-info/WHEEL'
2025-01-06T16:31:19,988   adding 'rsalor-1.0.5.dist-info/top_level.txt'
2025-01-06T16:31:19,989   adding 'rsalor-1.0.5.dist-info/RECORD'
2025-01-06T16:31:19,996   removing build/bdist.linux-armv7l/wheel
2025-01-06T16:31:20,160   Building wheel for rsalor (setup.py): finished with status 'done'
2025-01-06T16:31:20,166   Created wheel for rsalor: filename=rsalor-1.0.5-cp311-cp311-linux_armv7l.whl size=185659 sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a
2025-01-06T16:31:20,167   Stored in directory: /tmp/pip-ephem-wheel-cache-4x8t2_d2/wheels/5a/8f/93/0769ada817bf631baf5cbb8d4746b7dc518eef2e14b9576833
2025-01-06T16:31:20,182 Successfully built rsalor
2025-01-06T16:31:20,197 Removed build tracker: '/tmp/pip-build-tracker-i5m0l8vx'