2025-01-06T17:35:42,418 Disabling truststore because Python version isn't 3.10+
2025-01-06T17:35:42,980 Created temporary directory: /tmp/pip-build-tracker-0y5nzw80
2025-01-06T17:35:42,981 Initialized build tracking at /tmp/pip-build-tracker-0y5nzw80
2025-01-06T17:35:42,981 Created build tracker: /tmp/pip-build-tracker-0y5nzw80
2025-01-06T17:35:42,981 Entered build tracker: /tmp/pip-build-tracker-0y5nzw80
2025-01-06T17:35:42,982 Created temporary directory: /tmp/pip-wheel-tm2hh3fu
2025-01-06T17:35:42,987 Created temporary directory: /tmp/pip-ephem-wheel-cache-gwr0tvld
2025-01-06T17:35:43,035 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-06T17:35:43,039 2 location(s) to search for versions of rsalor:
2025-01-06T17:35:43,039 * https://pypi.org/simple/rsalor/
2025-01-06T17:35:43,039 * https://www.piwheels.org/simple/rsalor/
2025-01-06T17:35:43,042 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-01-06T17:35:43,042 Getting page https://pypi.org/simple/rsalor/
2025-01-06T17:35:43,044 Found index url https://pypi.org/simple/
2025-01-06T17:35:43,066 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-01-06T17:35:43,068   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-01-06T17:35:43,069   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-01-06T17:35:43,069   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-01-06T17:35:43,070   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-01-06T17:35:43,071   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-01-06T17:35:43,071   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-01-06T17:35:43,071 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-01-06T17:35:43,072 Getting page https://www.piwheels.org/simple/rsalor/
2025-01-06T17:35:43,073 Found index url https://www.piwheels.org/simple/
2025-01-06T17:35:43,950 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-01-06T17:35:43,959   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,959   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,960   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,960   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,961   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,961   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,962   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,962   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,963   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,963   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-06T17:35:43,964 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-01-06T17:35:43,964 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-01-06T17:35:44,004 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-01-06T17:35:44,007 Collecting rsalor==1.0.5
2025-01-06T17:35:44,011   Created temporary directory: /tmp/pip-unpack-4tgcquj3
2025-01-06T17:35:44,044   Downloading rsalor-1.0.5.tar.gz (48 kB)
2025-01-06T17:35:44,139   Added rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-0y5nzw80'
2025-01-06T17:35:44,142   Running setup.py (path:/tmp/pip-wheel-tm2hh3fu/rsalor_2a89954b317f44aa880bb0f023e0a11c/setup.py) egg_info for package rsalor
2025-01-06T17:35:44,142   Created temporary directory: /tmp/pip-pip-egg-info-pr7cidt8
2025-01-06T17:35:44,143   Preparing metadata (setup.py): started
2025-01-06T17:35:44,144   Running command python setup.py egg_info
2025-01-06T17:35:45,290   running egg_info
2025-01-06T17:35:45,326   creating /tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info
2025-01-06T17:35:45,327   writing /tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/PKG-INFO
2025-01-06T17:35:45,331   writing dependency_links to /tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/dependency_links.txt
2025-01-06T17:35:45,333   writing requirements to /tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/requires.txt
2025-01-06T17:35:45,334   writing top-level names to /tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/top_level.txt
2025-01-06T17:35:45,335   writing manifest file '/tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/SOURCES.txt'
2025-01-06T17:35:45,477   reading manifest file '/tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/SOURCES.txt'
2025-01-06T17:35:45,479   reading manifest template 'MANIFEST.in'
2025-01-06T17:35:45,487   warning: no previously-included files found matching 'fig/*'
2025-01-06T17:35:45,488   warning: no previously-included files found matching 'src/*'
2025-01-06T17:35:45,489   warning: no previously-included files found matching 'tmp/*'
2025-01-06T17:35:45,489   warning: no previously-included files found matching '0_*'
2025-01-06T17:35:45,490   warning: no previously-included files found matching 'conda-env.yml'
2025-01-06T17:35:45,490   warning: no previously-included files found matching 'test_data/*'
2025-01-06T17:35:45,491   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-06T17:35:45,492   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-06T17:35:45,492   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-06T17:35:45,493   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-06T17:35:45,494   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-06T17:35:45,495   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-06T17:35:45,495   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-01-06T17:35:45,496   adding license file 'LICENCE'
2025-01-06T17:35:45,500   writing manifest file '/tmp/pip-pip-egg-info-pr7cidt8/rsalor.egg-info/SOURCES.txt'
2025-01-06T17:35:45,590   Preparing metadata (setup.py): finished with status 'done'
2025-01-06T17:35:45,595   Source in /tmp/pip-wheel-tm2hh3fu/rsalor_2a89954b317f44aa880bb0f023e0a11c has version 1.0.5, which satisfies requirement rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz
2025-01-06T17:35:45,596   Removed rsalor==1.0.5 from https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-0y5nzw80'
2025-01-06T17:35:45,604 Created temporary directory: /tmp/pip-unpack-2wszcst8
2025-01-06T17:35:45,605 Created temporary directory: /tmp/pip-unpack-30o3e8aj
2025-01-06T17:35:45,605 Building wheels for collected packages: rsalor
2025-01-06T17:35:45,609   Created temporary directory: /tmp/pip-wheel-lw1t2fnb
2025-01-06T17:35:45,609   Building wheel for rsalor (setup.py): started
2025-01-06T17:35:45,610   Destination directory: /tmp/pip-wheel-lw1t2fnb
2025-01-06T17:35:45,611   Running command python setup.py bdist_wheel
2025-01-06T17:35:46,695   running bdist_wheel
2025-01-06T17:35:46,863   running build
2025-01-06T17:35:46,864   running build_py
2025-01-06T17:35:46,900   creating build/lib.linux-armv7l-cpython-39/rsalor
2025-01-06T17:35:46,902   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor
2025-01-06T17:35:46,904   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor
2025-01-06T17:35:46,908   creating build/lib.linux-armv7l-cpython-39/rsalor/structure
2025-01-06T17:35:46,909   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure
2025-01-06T17:35:46,911   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure
2025-01-06T17:35:46,913   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure
2025-01-06T17:35:46,915   creating build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,917   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,918   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,920   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,923   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,925   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils
2025-01-06T17:35:46,927   creating build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,928   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,930   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,932   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,935   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,937   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa
2025-01-06T17:35:46,939   creating build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,940   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,942   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,944   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,946   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,948   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,951   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence
2025-01-06T17:35:46,953   creating build/lib.linux-armv7l-cpython-39/rsalor/weights
2025-01-06T17:35:46,954   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights
2025-01-06T17:35:46,956   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights
2025-01-06T17:35:46,964   running build_ext
2025-01-06T17:35:47,448   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-01-06T17:35:47,449   creating build/temp.linux-armv7l-cpython-39/rsalor/weights
2025-01-06T17:35:47,451   arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp
2025-01-06T17:35:48,660   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-01-06T17:35:48,660   rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-01-06T17:35:48,660      48 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-01-06T17:35:48,661         |                    ~~^~~~~~~~~~~
2025-01-06T17:35:49,071   arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp
2025-01-06T17:35:50,323   rsalor/weights/msa.cpp: In member function ‘std::vector<float> MSA::computeWeights()’:
2025-01-06T17:35:50,323   rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable]
2025-01-06T17:35:50,323     115 |         auto num_threads = this->num_threads;
2025-01-06T17:35:50,323         |              ^~~~~~~~~~~
2025-01-06T17:35:52,267   arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -fopenmp -O3
2025-01-06T17:35:52,626   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-06T17:35:52,627   !!

2025-01-06T17:35:52,627           ********************************************************************************
2025-01-06T17:35:52,628           Please avoid running ``setup.py`` directly.
2025-01-06T17:35:52,628           Instead, use pypa/build, pypa/installer or other
2025-01-06T17:35:52,628           standards-based tools.

2025-01-06T17:35:52,629           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-06T17:35:52,629           ********************************************************************************

2025-01-06T17:35:52,629   !!
2025-01-06T17:35:52,629     self.initialize_options()
2025-01-06T17:35:52,661   installing to build/bdist.linux-armv7l/wheel
2025-01-06T17:35:52,661   running install
2025-01-06T17:35:52,687   running install_lib
2025-01-06T17:35:52,720   creating build/bdist.linux-armv7l/wheel
2025-01-06T17:35:52,723   creating build/bdist.linux-armv7l/wheel/rsalor
2025-01-06T17:35:52,725   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-01-06T17:35:52,726   copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T17:35:52,727   copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T17:35:52,730   copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-06T17:35:52,732   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-01-06T17:35:52,733   copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T17:35:52,735   copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T17:35:52,737   copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T17:35:52,739   copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T17:35:52,741   copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-06T17:35:52,743   copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-06T17:35:52,746   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-01-06T17:35:52,747   copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T17:35:52,748   copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T17:35:52,751   copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T17:35:52,753   copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T17:35:52,755   copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-06T17:35:52,757   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-01-06T17:35:52,759   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,760   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,762   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,764   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,767   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,769   copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-06T17:35:52,771   copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-06T17:35:52,775   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-01-06T17:35:52,776   copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T17:35:52,778   copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T17:35:52,780   copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-06T17:35:52,791   running install_egg_info
2025-01-06T17:35:52,834   running egg_info
2025-01-06T17:35:52,868   writing rsalor.egg-info/PKG-INFO
2025-01-06T17:35:52,871   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-01-06T17:35:52,873   writing requirements to rsalor.egg-info/requires.txt
2025-01-06T17:35:52,874   writing top-level names to rsalor.egg-info/top_level.txt
2025-01-06T17:35:52,921   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-06T17:35:52,925   reading manifest template 'MANIFEST.in'
2025-01-06T17:35:52,933   warning: no previously-included files found matching 'fig/*'
2025-01-06T17:35:52,933   warning: no previously-included files found matching 'src/*'
2025-01-06T17:35:52,934   warning: no previously-included files found matching 'tmp/*'
2025-01-06T17:35:52,934   warning: no previously-included files found matching '0_*'
2025-01-06T17:35:52,935   warning: no previously-included files found matching 'conda-env.yml'
2025-01-06T17:35:52,935   warning: no previously-included files found matching 'test_data/*'
2025-01-06T17:35:52,936   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-06T17:35:52,937   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-06T17:35:52,938   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-06T17:35:52,939   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-06T17:35:52,940   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-06T17:35:52,940   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-06T17:35:52,941   adding license file 'LICENCE'
2025-01-06T17:35:52,946   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-06T17:35:52,947   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.5-py3.9.egg-info
2025-01-06T17:35:52,957   running install_scripts
2025-01-06T17:35:53,013   creating build/bdist.linux-armv7l/wheel/rsalor-1.0.5.dist-info/WHEEL
2025-01-06T17:35:53,015   creating '/tmp/pip-wheel-lw1t2fnb/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-06T17:35:53,018   adding 'rsalor/__init__.py'
2025-01-06T17:35:53,023   adding 'rsalor/msa.py'
2025-01-06T17:35:53,025   adding 'rsalor/rsa/__init__.py'
2025-01-06T17:35:53,026   adding 'rsalor/rsa/rsa_biopython.py'
2025-01-06T17:35:53,028   adding 'rsalor/rsa/rsa_dssp.py'
2025-01-06T17:35:53,029   adding 'rsalor/rsa/rsa_music.py'
2025-01-06T17:35:53,031   adding 'rsalor/rsa/rsa_solver.py'
2025-01-06T17:35:53,033   adding 'rsalor/sequence/__init__.py'
2025-01-06T17:35:53,035   adding 'rsalor/sequence/amino_acid.py'
2025-01-06T17:35:53,037   adding 'rsalor/sequence/fasta_reader.py'
2025-01-06T17:35:53,038   adding 'rsalor/sequence/mutation.py'
2025-01-06T17:35:53,040   adding 'rsalor/sequence/pairwise_alignment.py'
2025-01-06T17:35:53,042   adding 'rsalor/sequence/sequence.py'
2025-01-06T17:35:53,044   adding 'rsalor/structure/__init__.py'
2025-01-06T17:35:53,045   adding 'rsalor/structure/residue.py'
2025-01-06T17:35:53,047   adding 'rsalor/structure/structure.py'
2025-01-06T17:35:53,050   adding 'rsalor/utils/CSV.py'
2025-01-06T17:35:53,051   adding 'rsalor/utils/__init__.py'
2025-01-06T17:35:53,053   adding 'rsalor/utils/ali_to_fasta.py'
2025-01-06T17:35:53,054   adding 'rsalor/utils/logger.py'
2025-01-06T17:35:53,055   adding 'rsalor/utils/utils.py'
2025-01-06T17:35:53,058   adding 'rsalor/weights/__init__.py'
2025-01-06T17:35:53,059   adding 'rsalor/weights/compute_weights.py'
2025-01-06T17:35:53,133   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so'
2025-01-06T17:35:53,138   adding 'rsalor-1.0.5.dist-info/LICENCE'
2025-01-06T17:35:53,139   adding 'rsalor-1.0.5.dist-info/METADATA'
2025-01-06T17:35:53,140   adding 'rsalor-1.0.5.dist-info/WHEEL'
2025-01-06T17:35:53,141   adding 'rsalor-1.0.5.dist-info/top_level.txt'
2025-01-06T17:35:53,142   adding 'rsalor-1.0.5.dist-info/RECORD'
2025-01-06T17:35:53,147   removing build/bdist.linux-armv7l/wheel
2025-01-06T17:35:53,282   Building wheel for rsalor (setup.py): finished with status 'done'
2025-01-06T17:35:53,287   Created wheel for rsalor: filename=rsalor-1.0.5-cp39-cp39-linux_armv7l.whl size=183378 sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2
2025-01-06T17:35:53,288   Stored in directory: /tmp/pip-ephem-wheel-cache-gwr0tvld/wheels/ce/ab/ce/3c6eecc37dd61943c7eeded71b66369f40fbc44fc1c053d454
2025-01-06T17:35:53,299 Successfully built rsalor
2025-01-06T17:35:53,307 Removed build tracker: '/tmp/pip-build-tracker-0y5nzw80'