2025-01-07T16:25:48,766 Created temporary directory: /tmp/pip-build-tracker-pcced2nh
2025-01-07T16:25:48,767 Initialized build tracking at /tmp/pip-build-tracker-pcced2nh
2025-01-07T16:25:48,768 Created build tracker: /tmp/pip-build-tracker-pcced2nh
2025-01-07T16:25:48,768 Entered build tracker: /tmp/pip-build-tracker-pcced2nh
2025-01-07T16:25:48,769 Created temporary directory: /tmp/pip-wheel-k0es8igl
2025-01-07T16:25:48,773 Created temporary directory: /tmp/pip-ephem-wheel-cache-gw3_mowz
2025-01-07T16:25:48,817 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-07T16:25:48,819 2 location(s) to search for versions of rsalor:
2025-01-07T16:25:48,819 * https://pypi.org/simple/rsalor/
2025-01-07T16:25:48,819 * https://www.piwheels.org/simple/rsalor/
2025-01-07T16:25:48,820 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/
2025-01-07T16:25:48,821 Getting page https://pypi.org/simple/rsalor/
2025-01-07T16:25:48,822 Found index url https://pypi.org/simple/
2025-01-07T16:25:49,040 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json
2025-01-07T16:25:49,043   Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0
2025-01-07T16:25:49,044   Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1
2025-01-07T16:25:49,045   Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2
2025-01-07T16:25:49,046   Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3
2025-01-07T16:25:49,047   Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4
2025-01-07T16:25:49,048   Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5
2025-01-07T16:25:49,049   Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6
2025-01-07T16:25:49,050 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/
2025-01-07T16:25:49,051 Getting page https://www.piwheels.org/simple/rsalor/
2025-01-07T16:25:49,052 Found index url https://www.piwheels.org/simple/
2025-01-07T16:25:49,228 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html
2025-01-07T16:25:49,233   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,233   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,234   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,235   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,235   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,236   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,237   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,237   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,237   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,238   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,238   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,239   Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9)
2025-01-07T16:25:49,240 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/
2025-01-07T16:25:49,240 Skipping link: not a file: https://pypi.org/simple/rsalor/
2025-01-07T16:25:49,260 Given no hashes to check 1 links for project 'rsalor': discarding no candidates
2025-01-07T16:25:49,261 Collecting rsalor==1.0.6
2025-01-07T16:25:49,264   Created temporary directory: /tmp/pip-unpack-k90w5x69
2025-01-07T16:25:49,403   Downloading rsalor-1.0.6.tar.gz (48 kB)
2025-01-07T16:25:49,527   Added rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-pcced2nh'
2025-01-07T16:25:49,529   Running setup.py (path:/tmp/pip-wheel-k0es8igl/rsalor_5e367bc62de64de58c93521c20d23329/setup.py) egg_info for package rsalor
2025-01-07T16:25:49,530   Created temporary directory: /tmp/pip-pip-egg-info-0i7pvz6d
2025-01-07T16:25:49,531   Preparing metadata (setup.py): started
2025-01-07T16:25:49,532   Running command python setup.py egg_info
2025-01-07T16:25:50,652   running egg_info
2025-01-07T16:25:50,679   creating /tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info
2025-01-07T16:25:50,681   writing /tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/PKG-INFO
2025-01-07T16:25:50,684   writing dependency_links to /tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/dependency_links.txt
2025-01-07T16:25:50,686   writing requirements to /tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/requires.txt
2025-01-07T16:25:50,687   writing top-level names to /tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/top_level.txt
2025-01-07T16:25:50,689   writing manifest file '/tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/SOURCES.txt'
2025-01-07T16:25:50,805   reading manifest file '/tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/SOURCES.txt'
2025-01-07T16:25:50,806   reading manifest template 'MANIFEST.in'
2025-01-07T16:25:50,815   warning: no previously-included files found matching 'fig/*'
2025-01-07T16:25:50,816   warning: no previously-included files found matching 'src/*'
2025-01-07T16:25:50,817   warning: no previously-included files found matching 'tmp/*'
2025-01-07T16:25:50,818   warning: no previously-included files found matching '0_*'
2025-01-07T16:25:50,819   warning: no previously-included files found matching 'conda-env.yml'
2025-01-07T16:25:50,820   warning: no previously-included files found matching 'test_data/*'
2025-01-07T16:25:50,821   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-07T16:25:50,822   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-07T16:25:50,823   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-07T16:25:50,824   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-07T16:25:50,825   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-07T16:25:50,826   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-07T16:25:50,828   warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution
2025-01-07T16:25:50,828   adding license file 'LICENCE'
2025-01-07T16:25:50,832   writing manifest file '/tmp/pip-pip-egg-info-0i7pvz6d/rsalor.egg-info/SOURCES.txt'
2025-01-07T16:25:50,940   Preparing metadata (setup.py): finished with status 'done'
2025-01-07T16:25:50,945   Source in /tmp/pip-wheel-k0es8igl/rsalor_5e367bc62de64de58c93521c20d23329 has version 1.0.6, which satisfies requirement rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz
2025-01-07T16:25:50,945   Removed rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-pcced2nh'
2025-01-07T16:25:50,951 Created temporary directory: /tmp/pip-unpack-5auoq826
2025-01-07T16:25:50,952 Created temporary directory: /tmp/pip-unpack-utroa8os
2025-01-07T16:25:50,953 Building wheels for collected packages: rsalor
2025-01-07T16:25:50,957   Created temporary directory: /tmp/pip-wheel-_bcyroxr
2025-01-07T16:25:50,958   Building wheel for rsalor (setup.py): started
2025-01-07T16:25:50,959   Destination directory: /tmp/pip-wheel-_bcyroxr
2025-01-07T16:25:50,959   Running command python setup.py bdist_wheel
2025-01-07T16:25:51,967   running bdist_wheel
2025-01-07T16:25:52,098   running build
2025-01-07T16:25:52,099   running build_py
2025-01-07T16:25:52,128   creating build/lib.linux-armv7l-cpython-311/rsalor
2025-01-07T16:25:52,131   copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-07T16:25:52,133   copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor
2025-01-07T16:25:52,136   creating build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-07T16:25:52,137   copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-07T16:25:52,139   copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-07T16:25:52,142   copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure
2025-01-07T16:25:52,144   creating build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,146   copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,148   copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,150   copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,152   copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,154   copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils
2025-01-07T16:25:52,157   creating build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,158   copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,160   copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,162   copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,164   copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,166   copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa
2025-01-07T16:25:52,169   creating build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-07T16:25:52,170   copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-07T16:25:52,172   copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights
2025-01-07T16:25:52,174   creating build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,175   copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,178   copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,179   copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,182   copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,184   copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,186   copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence
2025-01-07T16:25:52,194   running build_ext
2025-01-07T16:25:52,648   building 'rsalor.weights.lib_computeWeightsBackend' extension
2025-01-07T16:25:52,649   creating build/temp.linux-armv7l-cpython-311/rsalor/weights
2025-01-07T16:25:52,651   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp
2025-01-07T16:25:54,072   rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’:
2025-01-07T16:25:54,072   rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
2025-01-07T16:25:54,073      48 |     for(int i = 0; i < msa_depth; i++) { // Copy content from local
2025-01-07T16:25:54,074         |                    ~~^~~~~~~~~~~
2025-01-07T16:25:54,527   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp
2025-01-07T16:25:56,031   rsalor/weights/msa.cpp: In member function ‘std::vector<float> MSA::computeWeights()’:
2025-01-07T16:25:56,032   rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable]
2025-01-07T16:25:56,033     115 |         auto num_threads = this->num_threads;
2025-01-07T16:25:56,034         |              ^~~~~~~~~~~
2025-01-07T16:25:58,246   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -fopenmp -O3
2025-01-07T16:25:58,543   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-07T16:25:58,544   !!

2025-01-07T16:25:58,545           ********************************************************************************
2025-01-07T16:25:58,545           Please avoid running ``setup.py`` directly.
2025-01-07T16:25:58,546           Instead, use pypa/build, pypa/installer or other
2025-01-07T16:25:58,546           standards-based tools.

2025-01-07T16:25:58,547           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-07T16:25:58,547           ********************************************************************************

2025-01-07T16:25:58,548   !!
2025-01-07T16:25:58,549     self.initialize_options()
2025-01-07T16:25:58,569   installing to build/bdist.linux-armv7l/wheel
2025-01-07T16:25:58,570   running install
2025-01-07T16:25:58,595   running install_lib
2025-01-07T16:25:58,621   creating build/bdist.linux-armv7l/wheel
2025-01-07T16:25:58,624   creating build/bdist.linux-armv7l/wheel/rsalor
2025-01-07T16:25:58,625   copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-07T16:25:58,627   creating build/bdist.linux-armv7l/wheel/rsalor/structure
2025-01-07T16:25:58,628   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-07T16:25:58,630   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-07T16:25:58,632   copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure
2025-01-07T16:25:58,635   creating build/bdist.linux-armv7l/wheel/rsalor/utils
2025-01-07T16:25:58,636   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-07T16:25:58,638   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-07T16:25:58,640   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-07T16:25:58,643   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-07T16:25:58,645   copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils
2025-01-07T16:25:58,647   copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor
2025-01-07T16:25:58,650   creating build/bdist.linux-armv7l/wheel/rsalor/rsa
2025-01-07T16:25:58,651   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-07T16:25:58,654   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-07T16:25:58,656   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-07T16:25:58,658   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-07T16:25:58,660   copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa
2025-01-07T16:25:58,662   creating build/bdist.linux-armv7l/wheel/rsalor/weights
2025-01-07T16:25:58,664   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-07T16:25:58,666   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-07T16:25:58,674   copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights
2025-01-07T16:25:58,677   creating build/bdist.linux-armv7l/wheel/rsalor/sequence
2025-01-07T16:25:58,678   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,680   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,682   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,685   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,687   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,689   copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence
2025-01-07T16:25:58,691   running install_egg_info
2025-01-07T16:25:58,724   running egg_info
2025-01-07T16:25:58,759   writing rsalor.egg-info/PKG-INFO
2025-01-07T16:25:58,763   writing dependency_links to rsalor.egg-info/dependency_links.txt
2025-01-07T16:25:58,765   writing requirements to rsalor.egg-info/requires.txt
2025-01-07T16:25:58,766   writing top-level names to rsalor.egg-info/top_level.txt
2025-01-07T16:25:58,818   reading manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-07T16:25:58,823   reading manifest template 'MANIFEST.in'
2025-01-07T16:25:58,832   warning: no previously-included files found matching 'fig/*'
2025-01-07T16:25:58,833   warning: no previously-included files found matching 'src/*'
2025-01-07T16:25:58,834   warning: no previously-included files found matching 'tmp/*'
2025-01-07T16:25:58,834   warning: no previously-included files found matching '0_*'
2025-01-07T16:25:58,835   warning: no previously-included files found matching 'conda-env.yml'
2025-01-07T16:25:58,836   warning: no previously-included files found matching 'test_data/*'
2025-01-07T16:25:58,837   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2025-01-07T16:25:58,837   warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
2025-01-07T16:25:58,838   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-01-07T16:25:58,839   warning: no previously-included files matching '*.a' found anywhere in distribution
2025-01-07T16:25:58,840   warning: no previously-included files matching '*.o' found anywhere in distribution
2025-01-07T16:25:58,841   warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution
2025-01-07T16:25:58,842   adding license file 'LICENCE'
2025-01-07T16:25:58,846   writing manifest file 'rsalor.egg-info/SOURCES.txt'
2025-01-07T16:25:58,847   Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.6-py3.11.egg-info
2025-01-07T16:25:58,857   running install_scripts
2025-01-07T16:25:58,916   creating build/bdist.linux-armv7l/wheel/rsalor-1.0.6.dist-info/WHEEL
2025-01-07T16:25:58,918   creating '/tmp/pip-wheel-_bcyroxr/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-07T16:25:58,920   adding 'rsalor/__init__.py'
2025-01-07T16:25:58,926   adding 'rsalor/msa.py'
2025-01-07T16:25:58,928   adding 'rsalor/rsa/__init__.py'
2025-01-07T16:25:58,930   adding 'rsalor/rsa/rsa_biopython.py'
2025-01-07T16:25:58,931   adding 'rsalor/rsa/rsa_dssp.py'
2025-01-07T16:25:58,933   adding 'rsalor/rsa/rsa_music.py'
2025-01-07T16:25:58,934   adding 'rsalor/rsa/rsa_solver.py'
2025-01-07T16:25:58,936   adding 'rsalor/sequence/__init__.py'
2025-01-07T16:25:58,939   adding 'rsalor/sequence/amino_acid.py'
2025-01-07T16:25:58,940   adding 'rsalor/sequence/fasta_reader.py'
2025-01-07T16:25:58,942   adding 'rsalor/sequence/mutation.py'
2025-01-07T16:25:58,944   adding 'rsalor/sequence/pairwise_alignment.py'
2025-01-07T16:25:58,945   adding 'rsalor/sequence/sequence.py'
2025-01-07T16:25:58,947   adding 'rsalor/structure/__init__.py'
2025-01-07T16:25:58,948   adding 'rsalor/structure/residue.py'
2025-01-07T16:25:58,950   adding 'rsalor/structure/structure.py'
2025-01-07T16:25:58,953   adding 'rsalor/utils/CSV.py'
2025-01-07T16:25:58,954   adding 'rsalor/utils/__init__.py'
2025-01-07T16:25:58,955   adding 'rsalor/utils/ali_to_fasta.py'
2025-01-07T16:25:58,956   adding 'rsalor/utils/logger.py'
2025-01-07T16:25:58,958   adding 'rsalor/utils/utils.py'
2025-01-07T16:25:58,959   adding 'rsalor/weights/__init__.py'
2025-01-07T16:25:58,961   adding 'rsalor/weights/compute_weights.py'
2025-01-07T16:25:59,033   adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so'
2025-01-07T16:25:59,038   adding 'rsalor-1.0.6.dist-info/LICENCE'
2025-01-07T16:25:59,039   adding 'rsalor-1.0.6.dist-info/METADATA'
2025-01-07T16:25:59,040   adding 'rsalor-1.0.6.dist-info/WHEEL'
2025-01-07T16:25:59,041   adding 'rsalor-1.0.6.dist-info/top_level.txt'
2025-01-07T16:25:59,042   adding 'rsalor-1.0.6.dist-info/RECORD'
2025-01-07T16:25:59,046   removing build/bdist.linux-armv7l/wheel
2025-01-07T16:25:59,201   Building wheel for rsalor (setup.py): finished with status 'done'
2025-01-07T16:25:59,205   Created wheel for rsalor: filename=rsalor-1.0.6-cp311-cp311-linux_armv7l.whl size=186085 sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77
2025-01-07T16:25:59,206   Stored in directory: /tmp/pip-ephem-wheel-cache-gw3_mowz/wheels/33/47/d7/5ca79df654242c7ec38909eb831ec88df91a06e90d82000678
2025-01-07T16:25:59,217 Successfully built rsalor
2025-01-07T16:25:59,225 Removed build tracker: '/tmp/pip-build-tracker-pcced2nh'