2025-01-07T17:22:47,799 Disabling truststore because Python version isn't 3.10+ 2025-01-07T17:22:48,284 Created temporary directory: /tmp/pip-build-tracker-15ww5n_n 2025-01-07T17:22:48,285 Initialized build tracking at /tmp/pip-build-tracker-15ww5n_n 2025-01-07T17:22:48,285 Created build tracker: /tmp/pip-build-tracker-15ww5n_n 2025-01-07T17:22:48,285 Entered build tracker: /tmp/pip-build-tracker-15ww5n_n 2025-01-07T17:22:48,285 Created temporary directory: /tmp/pip-wheel-r7ogoijj 2025-01-07T17:22:48,291 Created temporary directory: /tmp/pip-ephem-wheel-cache-paebo1rp 2025-01-07T17:22:48,334 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-07T17:22:48,337 2 location(s) to search for versions of rsalor: 2025-01-07T17:22:48,337 * https://pypi.org/simple/rsalor/ 2025-01-07T17:22:48,337 * https://www.piwheels.org/simple/rsalor/ 2025-01-07T17:22:48,337 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2025-01-07T17:22:48,337 Getting page https://pypi.org/simple/rsalor/ 2025-01-07T17:22:48,339 Found index url https://pypi.org/simple/ 2025-01-07T17:22:48,435 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2025-01-07T17:22:48,437 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2025-01-07T17:22:48,438 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2025-01-07T17:22:48,439 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2025-01-07T17:22:48,439 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2025-01-07T17:22:48,440 Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4 2025-01-07T17:22:48,440 Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5 2025-01-07T17:22:48,441 Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6 2025-01-07T17:22:48,441 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2025-01-07T17:22:48,442 Getting page https://www.piwheels.org/simple/rsalor/ 2025-01-07T17:22:48,443 Found index url https://www.piwheels.org/simple/ 2025-01-07T17:22:48,483 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2025-01-07T17:22:48,488 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,489 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,489 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,489 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,489 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,489 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,490 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,490 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,490 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,490 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,490 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,491 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,491 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,491 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-07T17:22:48,491 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2025-01-07T17:22:48,491 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2025-01-07T17:22:48,508 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2025-01-07T17:22:48,510 Collecting rsalor==1.0.6 2025-01-07T17:22:48,512 Created temporary directory: /tmp/pip-unpack-wzik6o0w 2025-01-07T17:22:48,529 Downloading rsalor-1.0.6.tar.gz (48 kB) 2025-01-07T17:22:48,625 Added rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-15ww5n_n' 2025-01-07T17:22:48,627 Running setup.py (path:/tmp/pip-wheel-r7ogoijj/rsalor_8a5ab96b7cbc43f59a71e853ceffcdba/setup.py) egg_info for package rsalor 2025-01-07T17:22:48,627 Created temporary directory: /tmp/pip-pip-egg-info-oaptzkkz 2025-01-07T17:22:48,628 Preparing metadata (setup.py): started 2025-01-07T17:22:48,628 Running command python setup.py egg_info 2025-01-07T17:22:49,764 running egg_info 2025-01-07T17:22:49,798 creating /tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info 2025-01-07T17:22:49,800 writing /tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/PKG-INFO 2025-01-07T17:22:49,803 writing dependency_links to /tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/dependency_links.txt 2025-01-07T17:22:49,806 writing requirements to /tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/requires.txt 2025-01-07T17:22:49,807 writing top-level names to /tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/top_level.txt 2025-01-07T17:22:49,809 writing manifest file '/tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/SOURCES.txt' 2025-01-07T17:22:49,954 reading manifest file '/tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/SOURCES.txt' 2025-01-07T17:22:49,956 reading manifest template 'MANIFEST.in' 2025-01-07T17:22:49,964 warning: no previously-included files found matching 'fig/*' 2025-01-07T17:22:49,965 warning: no previously-included files found matching 'src/*' 2025-01-07T17:22:49,965 warning: no previously-included files found matching 'tmp/*' 2025-01-07T17:22:49,966 warning: no previously-included files found matching '0_*' 2025-01-07T17:22:49,967 warning: no previously-included files found matching 'conda-env.yml' 2025-01-07T17:22:49,967 warning: no previously-included files found matching 'test_data/*' 2025-01-07T17:22:49,968 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-07T17:22:49,969 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-07T17:22:49,969 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-07T17:22:49,970 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-07T17:22:49,971 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-07T17:22:49,971 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-07T17:22:49,972 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2025-01-07T17:22:49,973 adding license file 'LICENCE' 2025-01-07T17:22:49,977 writing manifest file '/tmp/pip-pip-egg-info-oaptzkkz/rsalor.egg-info/SOURCES.txt' 2025-01-07T17:22:50,064 Preparing metadata (setup.py): finished with status 'done' 2025-01-07T17:22:50,072 Source in /tmp/pip-wheel-r7ogoijj/rsalor_8a5ab96b7cbc43f59a71e853ceffcdba has version 1.0.6, which satisfies requirement rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz 2025-01-07T17:22:50,074 Removed rsalor==1.0.6 from https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-15ww5n_n' 2025-01-07T17:22:50,083 Created temporary directory: /tmp/pip-unpack-xltiqxfd 2025-01-07T17:22:50,084 Created temporary directory: /tmp/pip-unpack-2r5vp185 2025-01-07T17:22:50,084 Building wheels for collected packages: rsalor 2025-01-07T17:22:50,088 Created temporary directory: /tmp/pip-wheel-gkxgdx52 2025-01-07T17:22:50,088 Building wheel for rsalor (setup.py): started 2025-01-07T17:22:50,089 Destination directory: /tmp/pip-wheel-gkxgdx52 2025-01-07T17:22:50,089 Running command python setup.py bdist_wheel 2025-01-07T17:22:51,152 running bdist_wheel 2025-01-07T17:22:51,298 running build 2025-01-07T17:22:51,298 running build_py 2025-01-07T17:22:51,331 creating build/lib.linux-armv7l-cpython-39/rsalor 2025-01-07T17:22:51,334 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-07T17:22:51,338 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor 2025-01-07T17:22:51,340 creating build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,342 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,343 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,346 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,349 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,350 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,353 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-39/rsalor/sequence 2025-01-07T17:22:51,356 creating build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-07T17:22:51,358 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-07T17:22:51,359 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-07T17:22:51,361 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-39/rsalor/structure 2025-01-07T17:22:51,364 creating build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-07T17:22:51,365 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-07T17:22:51,367 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-39/rsalor/weights 2025-01-07T17:22:51,370 creating build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,371 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,373 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,376 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,377 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,379 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-39/rsalor/rsa 2025-01-07T17:22:51,382 creating build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,383 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,385 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,387 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,389 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,391 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-39/rsalor/utils 2025-01-07T17:22:51,399 running build_ext 2025-01-07T17:22:51,407 building 'rsalor.weights.lib_computeWeightsBackend' extension 2025-01-07T17:22:51,408 creating build/temp.linux-armv7l-cpython-39/rsalor/weights 2025-01-07T17:22:51,410 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 -fopenmp 2025-01-07T17:22:52,655 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2025-01-07T17:22:52,655 rsalor/weights/computeWeightsBackend.cpp:48:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2025-01-07T17:22:52,656 48 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2025-01-07T17:22:52,656 | ~~^~~~~~~~~~~ 2025-01-07T17:22:53,071 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.9 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -std=c++11 -O3 -fopenmp 2025-01-07T17:22:54,325 rsalor/weights/msa.cpp: In member function ‘std::vector MSA::computeWeights()’: 2025-01-07T17:22:54,325 rsalor/weights/msa.cpp:115:14: warning: unused variable ‘num_threads’ [-Wunused-variable] 2025-01-07T17:22:54,325 115 | auto num_threads = this->num_threads; 2025-01-07T17:22:54,326 | ^~~~~~~~~~~ 2025-01-07T17:22:56,278 arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-39/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-39/rsalor/weights/msa.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -fopenmp -O3 2025-01-07T17:22:56,603 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-07T17:22:56,603 !! 2025-01-07T17:22:56,604 ******************************************************************************** 2025-01-07T17:22:56,604 Please avoid running ``setup.py`` directly. 2025-01-07T17:22:56,604 Instead, use pypa/build, pypa/installer or other 2025-01-07T17:22:56,604 standards-based tools. 2025-01-07T17:22:56,604 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-07T17:22:56,604 ******************************************************************************** 2025-01-07T17:22:56,605 !! 2025-01-07T17:22:56,605 self.initialize_options() 2025-01-07T17:22:56,631 installing to build/bdist.linux-armv7l/wheel 2025-01-07T17:22:56,632 running install 2025-01-07T17:22:56,659 running install_lib 2025-01-07T17:22:56,688 creating build/bdist.linux-armv7l/wheel 2025-01-07T17:22:56,690 creating build/bdist.linux-armv7l/wheel/rsalor 2025-01-07T17:22:56,691 copying build/lib.linux-armv7l-cpython-39/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-07T17:22:56,694 copying build/lib.linux-armv7l-cpython-39/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-07T17:22:56,696 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2025-01-07T17:22:56,697 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,699 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,701 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,704 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,706 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,708 copying build/lib.linux-armv7l-cpython-39/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-07T17:22:56,711 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2025-01-07T17:22:56,712 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-07T17:22:56,713 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-07T17:22:56,715 copying build/lib.linux-armv7l-cpython-39/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-07T17:22:56,718 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2025-01-07T17:22:56,719 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-07T17:22:56,730 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-07T17:22:56,732 copying build/lib.linux-armv7l-cpython-39/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-07T17:22:56,734 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2025-01-07T17:22:56,735 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-07T17:22:56,737 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-07T17:22:56,739 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-07T17:22:56,741 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-07T17:22:56,743 copying build/lib.linux-armv7l-cpython-39/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-07T17:22:56,746 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2025-01-07T17:22:56,747 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-07T17:22:56,749 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-07T17:22:56,751 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-07T17:22:56,752 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-07T17:22:56,755 copying build/lib.linux-armv7l-cpython-39/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-07T17:22:56,756 running install_egg_info 2025-01-07T17:22:56,791 running egg_info 2025-01-07T17:22:56,820 writing rsalor.egg-info/PKG-INFO 2025-01-07T17:22:56,824 writing dependency_links to rsalor.egg-info/dependency_links.txt 2025-01-07T17:22:56,825 writing requirements to rsalor.egg-info/requires.txt 2025-01-07T17:22:56,826 writing top-level names to rsalor.egg-info/top_level.txt 2025-01-07T17:22:56,867 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-07T17:22:56,871 reading manifest template 'MANIFEST.in' 2025-01-07T17:22:56,879 warning: no previously-included files found matching 'fig/*' 2025-01-07T17:22:56,879 warning: no previously-included files found matching 'src/*' 2025-01-07T17:22:56,880 warning: no previously-included files found matching 'tmp/*' 2025-01-07T17:22:56,881 warning: no previously-included files found matching '0_*' 2025-01-07T17:22:56,881 warning: no previously-included files found matching 'conda-env.yml' 2025-01-07T17:22:56,882 warning: no previously-included files found matching 'test_data/*' 2025-01-07T17:22:56,883 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-07T17:22:56,884 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-07T17:22:56,884 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-07T17:22:56,885 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-07T17:22:56,886 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-07T17:22:56,887 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-07T17:22:56,888 adding license file 'LICENCE' 2025-01-07T17:22:56,892 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-07T17:22:56,893 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.6-py3.9.egg-info 2025-01-07T17:22:56,903 running install_scripts 2025-01-07T17:22:56,958 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.6.dist-info/WHEEL 2025-01-07T17:22:56,960 creating '/tmp/pip-wheel-gkxgdx52/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-07T17:22:56,963 adding 'rsalor/__init__.py' 2025-01-07T17:22:56,968 adding 'rsalor/msa.py' 2025-01-07T17:22:56,970 adding 'rsalor/rsa/__init__.py' 2025-01-07T17:22:56,971 adding 'rsalor/rsa/rsa_biopython.py' 2025-01-07T17:22:56,973 adding 'rsalor/rsa/rsa_dssp.py' 2025-01-07T17:22:56,975 adding 'rsalor/rsa/rsa_music.py' 2025-01-07T17:22:56,976 adding 'rsalor/rsa/rsa_solver.py' 2025-01-07T17:22:56,979 adding 'rsalor/sequence/__init__.py' 2025-01-07T17:22:56,982 adding 'rsalor/sequence/amino_acid.py' 2025-01-07T17:22:56,985 adding 'rsalor/sequence/fasta_reader.py' 2025-01-07T17:22:56,986 adding 'rsalor/sequence/mutation.py' 2025-01-07T17:22:56,988 adding 'rsalor/sequence/pairwise_alignment.py' 2025-01-07T17:22:56,989 adding 'rsalor/sequence/sequence.py' 2025-01-07T17:22:56,991 adding 'rsalor/structure/__init__.py' 2025-01-07T17:22:56,992 adding 'rsalor/structure/residue.py' 2025-01-07T17:22:56,994 adding 'rsalor/structure/structure.py' 2025-01-07T17:22:56,997 adding 'rsalor/utils/CSV.py' 2025-01-07T17:22:56,998 adding 'rsalor/utils/__init__.py' 2025-01-07T17:22:57,000 adding 'rsalor/utils/ali_to_fasta.py' 2025-01-07T17:22:57,001 adding 'rsalor/utils/logger.py' 2025-01-07T17:22:57,002 adding 'rsalor/utils/utils.py' 2025-01-07T17:22:57,004 adding 'rsalor/weights/__init__.py' 2025-01-07T17:22:57,005 adding 'rsalor/weights/compute_weights.py' 2025-01-07T17:22:57,080 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-39-arm-linux-gnueabihf.so' 2025-01-07T17:22:57,085 adding 'rsalor-1.0.6.dist-info/LICENCE' 2025-01-07T17:22:57,087 adding 'rsalor-1.0.6.dist-info/METADATA' 2025-01-07T17:22:57,088 adding 'rsalor-1.0.6.dist-info/WHEEL' 2025-01-07T17:22:57,089 adding 'rsalor-1.0.6.dist-info/top_level.txt' 2025-01-07T17:22:57,090 adding 'rsalor-1.0.6.dist-info/RECORD' 2025-01-07T17:22:57,094 removing build/bdist.linux-armv7l/wheel 2025-01-07T17:22:57,198 Building wheel for rsalor (setup.py): finished with status 'done' 2025-01-07T17:22:57,203 Created wheel for rsalor: filename=rsalor-1.0.6-cp39-cp39-linux_armv7l.whl size=183837 sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad 2025-01-07T17:22:57,204 Stored in directory: /tmp/pip-ephem-wheel-cache-paebo1rp/wheels/0e/ed/ce/4c747cb368bb3ac3894a1246ab617f1a403a0b0df1bd7f0c4a 2025-01-07T17:22:57,215 Successfully built rsalor 2025-01-07T17:22:57,223 Removed build tracker: '/tmp/pip-build-tracker-15ww5n_n'