2025-01-07T20:42:16,202 Created temporary directory: /tmp/pip-build-tracker-5xealmq2
2025-01-07T20:42:16,204 Initialized build tracking at /tmp/pip-build-tracker-5xealmq2
2025-01-07T20:42:16,204 Created build tracker: /tmp/pip-build-tracker-5xealmq2
2025-01-07T20:42:16,205 Entered build tracker: /tmp/pip-build-tracker-5xealmq2
2025-01-07T20:42:16,206 Created temporary directory: /tmp/pip-wheel-1ejj1qps
2025-01-07T20:42:16,210 Created temporary directory: /tmp/pip-ephem-wheel-cache-xtbkub69
2025-01-07T20:42:16,257 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-01-07T20:42:16,260 2 location(s) to search for versions of topaz-em:
2025-01-07T20:42:16,260 * https://pypi.org/simple/topaz-em/
2025-01-07T20:42:16,260 * https://www.piwheels.org/simple/topaz-em/
2025-01-07T20:42:16,261 Fetching project page and analyzing links: https://pypi.org/simple/topaz-em/
2025-01-07T20:42:16,261 Getting page https://pypi.org/simple/topaz-em/
2025-01-07T20:42:16,263 Found index url https://pypi.org/simple/
2025-01-07T20:42:16,486 Fetched page https://pypi.org/simple/topaz-em/ as application/vnd.pypi.simple.v1+json
2025-01-07T20:42:16,491   Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.0
2025-01-07T20:42:16,492   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,493   Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.1
2025-01-07T20:42:16,493   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,494   Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.2
2025-01-07T20:42:16,495   Found link https://files.pythonhosted.org/packages/69/a9/4c0bf446ea2e9f86b09ed921811fca0bf9ab4ccc0b4bcf35c3ae221a8bc4/topaz-em-0.2.3.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.3
2025-01-07T20:42:16,496   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/59/a8/e5ec76bfedffccaf69d72bf7a2be4ea5dbd9c44df3a64d969a9d80551a78/topaz_em-0.2.3-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,496   Found link https://files.pythonhosted.org/packages/b3/5c/b09a5447f6ea2db96a199586e2f5f1824e9384bf4d20882b461a426ff1af/topaz-em-0.2.4.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.4
2025-01-07T20:42:16,497   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/b2/cc/46c4c0f84cacdf2b167a3909790189a28f6ff4eb462a552d454de549af9e/topaz_em-0.2.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,497   Found link https://files.pythonhosted.org/packages/06/ea/44888d346ced25f465365e98d44f8f38e0889ffb7c4447ee5e87ff8014ec/topaz-em-0.2.5a0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5a0
2025-01-07T20:42:16,498   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/52/81/56d904118d1a299c1b8042feffb4827029985224829b0fc2150f4c6ae1f1/topaz_em-0.2.5a0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,499   Found link https://files.pythonhosted.org/packages/ca/1a/08aa79abb2a010b143e10f9e7a7c2d2b5e65629af6bc0548bb9939fa4517/topaz-em-0.2.5.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.2.5
2025-01-07T20:42:16,499   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/41/04/6d553c74d94ebf78fa8c3bb84c07884be098390043139e93b8f58f700cd2/topaz_em-0.2.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,500   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/e5/ea/0186053a6ed7db0601a3e9795ec71be82894c98819559bf28802f6a504ec/topaz_em-0.3.0-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,501   Found link https://files.pythonhosted.org/packages/fe/9b/7c32d9c7405c2185edcb708fc1cfb2d47b9bb569001da12012619bd99931/topaz_em-0.3.0.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.0
2025-01-07T20:42:16,501   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/9c/8d/7720e829913c8b02aa880a0cf34bec0b5c9e7d1af2812a6d237c7539b6d6/topaz_em-0.3.1-py3-none-any.whl (from https://pypi.org/simple/topaz-em/)
2025-01-07T20:42:16,502   Found link https://files.pythonhosted.org/packages/af/7d/91a4ccab5c08f7e261c81aa88d2c382d1718da80531a819dfe1a7aeaa05c/topaz_em-0.3.1.tar.gz (from https://pypi.org/simple/topaz-em/), version: 0.3.1
2025-01-07T20:42:16,502   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d9/f9/5954f56b438dd6f1f08554f0d4403027ebda5e424b4df9c9a9b1b38ea4f2/topaz_em-0.3.4-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2025-01-07T20:42:16,503   Found link https://files.pythonhosted.org/packages/47/d7/925103f217b1ec092ef243c53cd853359bea18e685e24bc5503875a72067/topaz_em-0.3.4.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.4
2025-01-07T20:42:16,504   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/bf/cf/c95a25d77ce773c6793924ebf1773b09cc0d53273ffc0924b03d5cb19910/topaz_em-0.3.5-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2025-01-07T20:42:16,505   Found link https://files.pythonhosted.org/packages/7a/03/4ecc189a0945c4de0ed956f21d3928aa744267db03e34cbb018bea67b1e5/topaz_em-0.3.5.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.5
2025-01-07T20:42:16,506   Skipping link: No binaries permitted for topaz-em: https://files.pythonhosted.org/packages/d6/5d/f8715405f1fc39b0cddaf9434c8f609fcd296e49d7e0a637a88f69e56444/topaz_em-0.3.6-py3-none-any.whl (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8)
2025-01-07T20:42:16,507   Found link https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz (from https://pypi.org/simple/topaz-em/) (requires-python:<=3.12,>=3.8), version: 0.3.6
2025-01-07T20:42:16,508 Fetching project page and analyzing links: https://www.piwheels.org/simple/topaz-em/
2025-01-07T20:42:16,509 Getting page https://www.piwheels.org/simple/topaz-em/
2025-01-07T20:42:16,510 Found index url https://www.piwheels.org/simple/
2025-01-07T20:42:16,684 Fetched page https://www.piwheels.org/simple/topaz-em/ as text/html
2025-01-07T20:42:16,689   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.5-py3-none-any.whl#sha256=a51b117556b0902d11bad3e1b0daaeb973ae7dcb00417b8bc07c1d895553d8a8 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12)
2025-01-07T20:42:16,689   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.4-py3-none-any.whl#sha256=b962fae383a6452ef55bc823afec9fd34b6f6bbb57274fa304f3a4a234f23dd1 (from https://www.piwheels.org/simple/topaz-em/) (requires-python:>=3.8,<=3.12)
2025-01-07T20:42:16,690   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.1-py3-none-any.whl#sha256=fcd3dfb22ccf0bcd8b54d07fc422adb69959f2e8f5a5391a18e3af1951f8ee8c (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,690   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.3.0-py3-none-any.whl#sha256=e5c103dabd6452cce717a507191eb761de4ee19c5ba288a4a302a3aa1b1ef6e8 (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,691   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5-py3-none-any.whl#sha256=67328ced1dd8efa4457ae7bdcb631764345c2c993ffa5feece627ba2c4032a88 (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,692   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.5a0-py3-none-any.whl#sha256=40669a56d2963f8562b92b6384e04ddea6c49a71b42acd170fcd8e746daf07ea (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,692   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.4-py3-none-any.whl#sha256=25561ebcb450d9aa42ef63bf569d1b60dab233206b186bb02b246d8284b23b5b (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,693   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.3-py3-none-any.whl#sha256=5c4ee55a8cc36e266f4ec651f877a0838e708aa9cf6cc47b9dcbde3db09721bb (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,693   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.2-py3-none-any.whl#sha256=0a51911e290fe605f2fe66b679611e6c2c1029e9edb6a5d8d773f2d0b96c8a4d (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,694   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,694   Skipping link: No binaries permitted for topaz-em: https://www.piwheels.org/simple/topaz-em/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://www.piwheels.org/simple/topaz-em/)
2025-01-07T20:42:16,695 Skipping link: not a file: https://www.piwheels.org/simple/topaz-em/
2025-01-07T20:42:16,695 Skipping link: not a file: https://pypi.org/simple/topaz-em/
2025-01-07T20:42:16,716 Given no hashes to check 1 links for project 'topaz-em': discarding no candidates
2025-01-07T20:42:16,718 Collecting topaz-em==0.3.6
2025-01-07T20:42:16,720   Created temporary directory: /tmp/pip-unpack-x0_43tdu
2025-01-07T20:42:17,432   Downloading topaz_em-0.3.6.tar.gz (48.2 MB)
2025-01-07T20:42:26,828   Added topaz-em==0.3.6 from https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-5xealmq2'
2025-01-07T20:42:26,831   Running setup.py (path:/tmp/pip-wheel-1ejj1qps/topaz-em_77e4b66343bd4bf4b70108cd3d39ff0a/setup.py) egg_info for package topaz-em
2025-01-07T20:42:26,831   Created temporary directory: /tmp/pip-pip-egg-info-x_dtxsis
2025-01-07T20:42:26,832   Preparing metadata (setup.py): started
2025-01-07T20:42:26,833   Running command python setup.py egg_info
2025-01-07T20:42:27,992   running egg_info
2025-01-07T20:42:28,023   creating /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info
2025-01-07T20:42:28,025   writing /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/PKG-INFO
2025-01-07T20:42:28,028   writing dependency_links to /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/dependency_links.txt
2025-01-07T20:42:28,030   writing entry points to /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/entry_points.txt
2025-01-07T20:42:28,031   writing requirements to /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/requires.txt
2025-01-07T20:42:28,032   writing top-level names to /tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/top_level.txt
2025-01-07T20:42:28,034   writing manifest file '/tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/SOURCES.txt'
2025-01-07T20:42:28,130   reading manifest file '/tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/SOURCES.txt'
2025-01-07T20:42:28,132   reading manifest template 'MANIFEST.in'
2025-01-07T20:42:28,135   adding license file 'LICENSE'
2025-01-07T20:42:28,140   writing manifest file '/tmp/pip-pip-egg-info-x_dtxsis/topaz_em.egg-info/SOURCES.txt'
2025-01-07T20:42:28,248   Preparing metadata (setup.py): finished with status 'done'
2025-01-07T20:42:28,252   Source in /tmp/pip-wheel-1ejj1qps/topaz-em_77e4b66343bd4bf4b70108cd3d39ff0a has version 0.3.6, which satisfies requirement topaz-em==0.3.6 from https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz
2025-01-07T20:42:28,253   Removed topaz-em==0.3.6 from https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-5xealmq2'
2025-01-07T20:42:28,260 Created temporary directory: /tmp/pip-unpack-qgkabjvz
2025-01-07T20:42:28,261 Created temporary directory: /tmp/pip-unpack-_rfrjwnn
2025-01-07T20:42:28,262 Building wheels for collected packages: topaz-em
2025-01-07T20:42:28,266   Created temporary directory: /tmp/pip-wheel-k6jheiuw
2025-01-07T20:42:28,266   Building wheel for topaz-em (setup.py): started
2025-01-07T20:42:28,267   Destination directory: /tmp/pip-wheel-k6jheiuw
2025-01-07T20:42:28,268   Running command python setup.py bdist_wheel
2025-01-07T20:42:29,300   running bdist_wheel
2025-01-07T20:42:29,439   running build
2025-01-07T20:42:29,439   running build_py
2025-01-07T20:42:29,471   creating build/lib/topaz
2025-01-07T20:42:29,473   copying topaz/training.py -> build/lib/topaz
2025-01-07T20:42:29,476   copying topaz/predict.py -> build/lib/topaz
2025-01-07T20:42:29,478   copying topaz/mrc.py -> build/lib/topaz
2025-01-07T20:42:29,480   copying topaz/methods.py -> build/lib/topaz
2025-01-07T20:42:29,482   copying topaz/extract.py -> build/lib/topaz
2025-01-07T20:42:29,485   copying topaz/metrics.py -> build/lib/topaz
2025-01-07T20:42:29,487   copying topaz/filters.py -> build/lib/topaz
2025-01-07T20:42:29,489   copying topaz/algorithms.py -> build/lib/topaz
2025-01-07T20:42:29,491   copying topaz/denoise.py -> build/lib/topaz
2025-01-07T20:42:29,494   copying topaz/_version.py -> build/lib/topaz
2025-01-07T20:42:29,496   copying topaz/main.py -> build/lib/topaz
2025-01-07T20:42:29,498   copying topaz/cuda.py -> build/lib/topaz
2025-01-07T20:42:29,500   copying topaz/__init__.py -> build/lib/topaz
2025-01-07T20:42:29,502   copying topaz/stats.py -> build/lib/topaz
2025-01-07T20:42:29,504   copying topaz/torch.py -> build/lib/topaz
2025-01-07T20:42:29,507   creating build/lib/topaz/model
2025-01-07T20:42:29,508   copying topaz/model/utils.py -> build/lib/topaz/model
2025-01-07T20:42:29,510   copying topaz/model/__init__.py -> build/lib/topaz/model
2025-01-07T20:42:29,512   copying topaz/model/factory.py -> build/lib/topaz/model
2025-01-07T20:42:29,513   copying topaz/model/classifier.py -> build/lib/topaz/model
2025-01-07T20:42:29,515   copying topaz/model/generative.py -> build/lib/topaz/model
2025-01-07T20:42:29,518   creating build/lib/topaz/transform
2025-01-07T20:42:29,519   copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
2025-01-07T20:42:29,521   copying topaz/transform/__init__.py -> build/lib/topaz/transform
2025-01-07T20:42:29,524   creating build/lib/topaz/denoising
2025-01-07T20:42:29,525   copying topaz/denoising/datasets.py -> build/lib/topaz/denoising
2025-01-07T20:42:29,528   copying topaz/denoising/models.py -> build/lib/topaz/denoising
2025-01-07T20:42:29,531   copying topaz/denoising/utils.py -> build/lib/topaz/denoising
2025-01-07T20:42:29,533   copying topaz/denoising/__init__.py -> build/lib/topaz/denoising
2025-01-07T20:42:29,535   creating build/lib/topaz/utils
2025-01-07T20:42:29,536   copying topaz/utils/conversions.py -> build/lib/topaz/utils
2025-01-07T20:42:29,539   copying topaz/utils/files.py -> build/lib/topaz/utils
2025-01-07T20:42:29,541   copying topaz/utils/image.py -> build/lib/topaz/utils
2025-01-07T20:42:29,543   copying topaz/utils/star.py -> build/lib/topaz/utils
2025-01-07T20:42:29,546   copying topaz/utils/printing.py -> build/lib/topaz/utils
2025-01-07T20:42:29,547   copying topaz/utils/picks.py -> build/lib/topaz/utils
2025-01-07T20:42:29,550   copying topaz/utils/__init__.py -> build/lib/topaz/utils
2025-01-07T20:42:29,552   creating build/lib/topaz/commands
2025-01-07T20:42:29,553   copying topaz/commands/denoise3d.py -> build/lib/topaz/commands
2025-01-07T20:42:29,555   copying topaz/commands/train.py -> build/lib/topaz/commands
2025-01-07T20:42:29,558   copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
2025-01-07T20:42:29,559   copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
2025-01-07T20:42:29,561   copying topaz/commands/segment.py -> build/lib/topaz/commands
2025-01-07T20:42:29,563   copying topaz/commands/downsample.py -> build/lib/topaz/commands
2025-01-07T20:42:29,565   copying topaz/commands/extract.py -> build/lib/topaz/commands
2025-01-07T20:42:29,567   copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
2025-01-07T20:42:29,570   copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
2025-01-07T20:42:29,571   copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
2025-01-07T20:42:29,573   copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
2025-01-07T20:42:29,575   copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
2025-01-07T20:42:29,577   copying topaz/commands/split.py -> build/lib/topaz/commands
2025-01-07T20:42:29,579   copying topaz/commands/preprocess.py -> build/lib/topaz/commands
2025-01-07T20:42:29,581   copying topaz/commands/gui.py -> build/lib/topaz/commands
2025-01-07T20:42:29,583   copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
2025-01-07T20:42:29,585   copying topaz/commands/normalize.py -> build/lib/topaz/commands
2025-01-07T20:42:29,587   copying topaz/commands/denoise.py -> build/lib/topaz/commands
2025-01-07T20:42:29,589   copying topaz/commands/__init__.py -> build/lib/topaz/commands
2025-01-07T20:42:29,591   copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
2025-01-07T20:42:29,593   copying topaz/commands/convert.py -> build/lib/topaz/commands
2025-01-07T20:42:29,595   copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
2025-01-07T20:42:29,598   creating build/lib/topaz/model/features
2025-01-07T20:42:29,599   copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
2025-01-07T20:42:29,601   copying topaz/model/features/basic.py -> build/lib/topaz/model/features
2025-01-07T20:42:29,603   copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
2025-01-07T20:42:29,605   copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
2025-01-07T20:42:29,607   copying topaz/model/features/msnet.py -> build/lib/topaz/model/features
2025-01-07T20:42:29,610   creating build/lib/topaz/utils/data
2025-01-07T20:42:29,611   copying topaz/utils/data/memory_mapped_data.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,614   copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,616   copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,619   copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,621   copying topaz/utils/data/train_test_split_micrographs.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,623   copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,625   copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
2025-01-07T20:42:29,626   running egg_info
2025-01-07T20:42:29,655   writing topaz_em.egg-info/PKG-INFO
2025-01-07T20:42:29,657   writing dependency_links to topaz_em.egg-info/dependency_links.txt
2025-01-07T20:42:29,659   writing entry points to topaz_em.egg-info/entry_points.txt
2025-01-07T20:42:29,661   writing requirements to topaz_em.egg-info/requires.txt
2025-01-07T20:42:29,662   writing top-level names to topaz_em.egg-info/top_level.txt
2025-01-07T20:42:29,702   reading manifest file 'topaz_em.egg-info/SOURCES.txt'
2025-01-07T20:42:29,709   reading manifest template 'MANIFEST.in'
2025-01-07T20:42:29,711   adding license file 'LICENSE'
2025-01-07T20:42:29,717   writing manifest file 'topaz_em.egg-info/SOURCES.txt'
2025-01-07T20:42:29,719   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.gui' is absent from the `packages` configuration.
2025-01-07T20:42:29,720   !!

2025-01-07T20:42:29,721           ********************************************************************************
2025-01-07T20:42:29,721           ############################
2025-01-07T20:42:29,722           # Package would be ignored #
2025-01-07T20:42:29,722           ############################
2025-01-07T20:42:29,723           Python recognizes 'topaz.gui' as an importable package[^1],
2025-01-07T20:42:29,723           but it is absent from setuptools' `packages` configuration.

2025-01-07T20:42:29,724           This leads to an ambiguous overall configuration. If you want to distribute this
2025-01-07T20:42:29,724           package, please make sure that 'topaz.gui' is explicitly added
2025-01-07T20:42:29,725           to the `packages` configuration field.

2025-01-07T20:42:29,726           Alternatively, you can also rely on setuptools' discovery methods
2025-01-07T20:42:29,726           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-01-07T20:42:29,727           instead of `find_packages(...)`/`find:`).

2025-01-07T20:42:29,728           You can read more about "package discovery" on setuptools documentation page:

2025-01-07T20:42:29,728           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-01-07T20:42:29,729           If you don't want 'topaz.gui' to be distributed and are
2025-01-07T20:42:29,730           already explicitly excluding 'topaz.gui' via
2025-01-07T20:42:29,730           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-01-07T20:42:29,731           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-01-07T20:42:29,732           combination with a more fine grained `package-data` configuration.

2025-01-07T20:42:29,733           You can read more about "package data files" on setuptools documentation page:

2025-01-07T20:42:29,734           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-01-07T20:42:29,739           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-01-07T20:42:29,740                 even if it does not contain any `.py` files.
2025-01-07T20:42:29,740                 On the other hand, currently there is no concept of package data
2025-01-07T20:42:29,741                 directory, all directories are treated like packages.
2025-01-07T20:42:29,742           ********************************************************************************

2025-01-07T20:42:29,743   !!
2025-01-07T20:42:29,743     check.warn(importable)
2025-01-07T20:42:29,744   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.denoise' is absent from the `packages` configuration.
2025-01-07T20:42:29,744   !!

2025-01-07T20:42:29,745           ********************************************************************************
2025-01-07T20:42:29,746           ############################
2025-01-07T20:42:29,746           # Package would be ignored #
2025-01-07T20:42:29,747           ############################
2025-01-07T20:42:29,747           Python recognizes 'topaz.pretrained.denoise' as an importable package[^1],
2025-01-07T20:42:29,748           but it is absent from setuptools' `packages` configuration.

2025-01-07T20:42:29,749           This leads to an ambiguous overall configuration. If you want to distribute this
2025-01-07T20:42:29,750           package, please make sure that 'topaz.pretrained.denoise' is explicitly added
2025-01-07T20:42:29,751           to the `packages` configuration field.

2025-01-07T20:42:29,752           Alternatively, you can also rely on setuptools' discovery methods
2025-01-07T20:42:29,752           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-01-07T20:42:29,753           instead of `find_packages(...)`/`find:`).

2025-01-07T20:42:29,754           You can read more about "package discovery" on setuptools documentation page:

2025-01-07T20:42:29,755           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-01-07T20:42:29,755           If you don't want 'topaz.pretrained.denoise' to be distributed and are
2025-01-07T20:42:29,756           already explicitly excluding 'topaz.pretrained.denoise' via
2025-01-07T20:42:29,756           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-01-07T20:42:29,757           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-01-07T20:42:29,757           combination with a more fine grained `package-data` configuration.

2025-01-07T20:42:29,758           You can read more about "package data files" on setuptools documentation page:

2025-01-07T20:42:29,759           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-01-07T20:42:29,772           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-01-07T20:42:29,791                 even if it does not contain any `.py` files.
2025-01-07T20:42:29,792                 On the other hand, currently there is no concept of package data
2025-01-07T20:42:29,793                 directory, all directories are treated like packages.
2025-01-07T20:42:29,794           ********************************************************************************

2025-01-07T20:42:29,795   !!
2025-01-07T20:42:29,796     check.warn(importable)
2025-01-07T20:42:29,804   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'topaz.pretrained.detector' is absent from the `packages` configuration.
2025-01-07T20:42:29,805   !!

2025-01-07T20:42:29,806           ********************************************************************************
2025-01-07T20:42:29,806           ############################
2025-01-07T20:42:29,807           # Package would be ignored #
2025-01-07T20:42:29,808           ############################
2025-01-07T20:42:29,808           Python recognizes 'topaz.pretrained.detector' as an importable package[^1],
2025-01-07T20:42:29,809           but it is absent from setuptools' `packages` configuration.

2025-01-07T20:42:29,810           This leads to an ambiguous overall configuration. If you want to distribute this
2025-01-07T20:42:29,811           package, please make sure that 'topaz.pretrained.detector' is explicitly added
2025-01-07T20:42:29,812           to the `packages` configuration field.

2025-01-07T20:42:29,813           Alternatively, you can also rely on setuptools' discovery methods
2025-01-07T20:42:29,813           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-01-07T20:42:29,814           instead of `find_packages(...)`/`find:`).

2025-01-07T20:42:29,815           You can read more about "package discovery" on setuptools documentation page:

2025-01-07T20:42:29,816           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-01-07T20:42:29,817           If you don't want 'topaz.pretrained.detector' to be distributed and are
2025-01-07T20:42:29,818           already explicitly excluding 'topaz.pretrained.detector' via
2025-01-07T20:42:29,818           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-01-07T20:42:29,819           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-01-07T20:42:29,820           combination with a more fine grained `package-data` configuration.

2025-01-07T20:42:29,821           You can read more about "package data files" on setuptools documentation page:

2025-01-07T20:42:29,823           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-01-07T20:42:29,825           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-01-07T20:42:29,825                 even if it does not contain any `.py` files.
2025-01-07T20:42:29,825                 On the other hand, currently there is no concept of package data
2025-01-07T20:42:29,826                 directory, all directories are treated like packages.
2025-01-07T20:42:29,826           ********************************************************************************

2025-01-07T20:42:29,827   !!
2025-01-07T20:42:29,827     check.warn(importable)
2025-01-07T20:42:29,828   creating build/lib/topaz/gui
2025-01-07T20:42:29,829   copying topaz/gui/topaz.html -> build/lib/topaz/gui
2025-01-07T20:42:29,829   creating build/lib/topaz/pretrained/denoise
2025-01-07T20:42:29,829   copying topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:29,830   copying topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:29,830   copying topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:29,968   copying topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:30,139   copying topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:30,207   copying topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:30,274   copying topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/lib/topaz/pretrained/denoise
2025-01-07T20:42:30,319   creating build/lib/topaz/pretrained/detector
2025-01-07T20:42:30,320   copying topaz/pretrained/detector/resnet16_u32.sav -> build/lib/topaz/pretrained/detector
2025-01-07T20:42:30,349   copying topaz/pretrained/detector/resnet16_u64.sav -> build/lib/topaz/pretrained/detector
2025-01-07T20:42:30,457   copying topaz/pretrained/detector/resnet8_u32.sav -> build/lib/topaz/pretrained/detector
2025-01-07T20:42:30,480   copying topaz/pretrained/detector/resnet8_u64.sav -> build/lib/topaz/pretrained/detector
2025-01-07T20:42:30,647   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-01-07T20:42:30,648   !!

2025-01-07T20:42:30,649           ********************************************************************************
2025-01-07T20:42:30,649           Please avoid running ``setup.py`` directly.
2025-01-07T20:42:30,650           Instead, use pypa/build, pypa/installer or other
2025-01-07T20:42:30,651           standards-based tools.

2025-01-07T20:42:30,652           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-01-07T20:42:30,653           ********************************************************************************

2025-01-07T20:42:30,654   !!
2025-01-07T20:42:30,655     self.initialize_options()
2025-01-07T20:42:30,676   installing to build/bdist.linux-armv7l/wheel
2025-01-07T20:42:30,677   running install
2025-01-07T20:42:30,701   running install_lib
2025-01-07T20:42:30,730   creating build/bdist.linux-armv7l/wheel
2025-01-07T20:42:30,732   creating build/bdist.linux-armv7l/wheel/topaz
2025-01-07T20:42:30,733   copying build/lib/topaz/training.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:30,738   creating build/bdist.linux-armv7l/wheel/topaz/gui
2025-01-07T20:42:30,740   copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/./topaz/gui
2025-01-07T20:42:30,754   copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:30,756   copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:30,759   copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:30,762   creating build/bdist.linux-armv7l/wheel/topaz/model
2025-01-07T20:42:30,763   copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2025-01-07T20:42:30,766   copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2025-01-07T20:42:30,769   creating build/bdist.linux-armv7l/wheel/topaz/model/features
2025-01-07T20:42:30,770   copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2025-01-07T20:42:30,773   copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2025-01-07T20:42:30,776   copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2025-01-07T20:42:30,778   copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2025-01-07T20:42:30,780   copying build/lib/topaz/model/features/msnet.py -> build/bdist.linux-armv7l/wheel/./topaz/model/features
2025-01-07T20:42:30,783   copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2025-01-07T20:42:30,785   copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2025-01-07T20:42:30,787   copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/./topaz/model
2025-01-07T20:42:30,790   copying build/lib/topaz/extract.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:30,793   creating build/bdist.linux-armv7l/wheel/topaz/transform
2025-01-07T20:42:30,795   copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2025-01-07T20:42:30,797   copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/transform
2025-01-07T20:42:30,799   creating build/bdist.linux-armv7l/wheel/topaz/pretrained
2025-01-07T20:42:30,801   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/detector
2025-01-07T20:42:30,802   copying build/lib/topaz/pretrained/detector/resnet16_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2025-01-07T20:42:30,907   copying build/lib/topaz/pretrained/detector/resnet8_u64.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2025-01-07T20:42:30,994   copying build/lib/topaz/pretrained/detector/resnet16_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2025-01-07T20:42:31,025   copying build/lib/topaz/pretrained/detector/resnet8_u32.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/detector
2025-01-07T20:42:31,048   creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
2025-01-07T20:42:31,049   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.1.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,112   copying build/lib/topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,155   copying build/lib/topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,194   copying build/lib/topaz/pretrained/denoise/unet_L2_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,275   copying build/lib/topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,453   copying build/lib/topaz/pretrained/denoise/affine_L1_v0.2.2.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,456   copying build/lib/topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav -> build/bdist.linux-armv7l/wheel/./topaz/pretrained/denoise
2025-01-07T20:42:31,675   copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,679   creating build/bdist.linux-armv7l/wheel/topaz/denoising
2025-01-07T20:42:31,680   copying build/lib/topaz/denoising/datasets.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2025-01-07T20:42:31,683   copying build/lib/topaz/denoising/models.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2025-01-07T20:42:31,686   copying build/lib/topaz/denoising/utils.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2025-01-07T20:42:31,688   copying build/lib/topaz/denoising/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/denoising
2025-01-07T20:42:31,691   creating build/bdist.linux-armv7l/wheel/topaz/utils
2025-01-07T20:42:31,692   copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,695   copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,697   copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,699   copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,702   creating build/bdist.linux-armv7l/wheel/topaz/utils/data
2025-01-07T20:42:31,704   copying build/lib/topaz/utils/data/memory_mapped_data.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,706   copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,709   copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,711   copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,713   copying build/lib/topaz/utils/data/train_test_split_micrographs.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,715   copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,718   copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils/data
2025-01-07T20:42:31,721   copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,723   copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,725   copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/utils
2025-01-07T20:42:31,727   copying build/lib/topaz/filters.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,729   copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,731   copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,735   copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,737   copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,740   copying build/lib/topaz/cuda.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,742   copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,744   copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,746   copying build/lib/topaz/torch.py -> build/bdist.linux-armv7l/wheel/./topaz
2025-01-07T20:42:31,749   creating build/bdist.linux-armv7l/wheel/topaz/commands
2025-01-07T20:42:31,751   copying build/lib/topaz/commands/denoise3d.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,754   copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,757   copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,759   copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,761   copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,763   copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,765   copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,768   copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,770   copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,772   copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,775   copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,777   copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,779   copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,781   copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,783   copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,785   copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,787   copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,789   copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,792   copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,794   copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,796   copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,798   copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/./topaz/commands
2025-01-07T20:42:31,800   running install_egg_info
2025-01-07T20:42:31,835   Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/./topaz_em-0.3.6-py3.11.egg-info
2025-01-07T20:42:31,846   running install_scripts
2025-01-07T20:42:31,863   creating build/bdist.linux-armv7l/wheel/topaz_em-0.3.6.dist-info/WHEEL
2025-01-07T20:42:31,866   creating '/tmp/pip-wheel-k6jheiuw/topaz_em-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-01-07T20:42:31,869   adding 'topaz/__init__.py'
2025-01-07T20:42:31,871   adding 'topaz/_version.py'
2025-01-07T20:42:31,873   adding 'topaz/algorithms.py'
2025-01-07T20:42:31,874   adding 'topaz/cuda.py'
2025-01-07T20:42:31,878   adding 'topaz/denoise.py'
2025-01-07T20:42:31,880   adding 'topaz/extract.py'
2025-01-07T20:42:31,882   adding 'topaz/filters.py'
2025-01-07T20:42:31,884   adding 'topaz/main.py'
2025-01-07T20:42:31,886   adding 'topaz/methods.py'
2025-01-07T20:42:31,888   adding 'topaz/metrics.py'
2025-01-07T20:42:31,890   adding 'topaz/mrc.py'
2025-01-07T20:42:31,892   adding 'topaz/predict.py'
2025-01-07T20:42:31,894   adding 'topaz/stats.py'
2025-01-07T20:42:31,896   adding 'topaz/torch.py'
2025-01-07T20:42:31,900   adding 'topaz/training.py'
2025-01-07T20:42:31,902   adding 'topaz/commands/__init__.py'
2025-01-07T20:42:31,903   adding 'topaz/commands/boxes_to_coordinates.py'
2025-01-07T20:42:31,906   adding 'topaz/commands/convert.py'
2025-01-07T20:42:31,907   adding 'topaz/commands/coordinates_to_boxes.py'
2025-01-07T20:42:31,909   adding 'topaz/commands/coordinates_to_eman2_json.py'
2025-01-07T20:42:31,910   adding 'topaz/commands/coordinates_to_star.py'
2025-01-07T20:42:31,912   adding 'topaz/commands/denoise.py'
2025-01-07T20:42:31,914   adding 'topaz/commands/denoise3d.py'
2025-01-07T20:42:31,916   adding 'topaz/commands/downsample.py'
2025-01-07T20:42:31,918   adding 'topaz/commands/extract.py'
2025-01-07T20:42:31,919   adding 'topaz/commands/gui.py'
2025-01-07T20:42:31,921   adding 'topaz/commands/normalize.py'
2025-01-07T20:42:31,922   adding 'topaz/commands/particle_stack.py'
2025-01-07T20:42:31,924   adding 'topaz/commands/precision_recall_curve.py'
2025-01-07T20:42:31,925   adding 'topaz/commands/preprocess.py'
2025-01-07T20:42:31,927   adding 'topaz/commands/scale_coordinates.py'
2025-01-07T20:42:31,929   adding 'topaz/commands/segment.py'
2025-01-07T20:42:31,930   adding 'topaz/commands/split.py'
2025-01-07T20:42:31,932   adding 'topaz/commands/star_particles_threshold.py'
2025-01-07T20:42:31,933   adding 'topaz/commands/star_to_coordinates.py'
2025-01-07T20:42:31,935   adding 'topaz/commands/train.py'
2025-01-07T20:42:31,937   adding 'topaz/commands/train_test_split.py'
2025-01-07T20:42:31,938   adding 'topaz/denoising/__init__.py'
2025-01-07T20:42:31,941   adding 'topaz/denoising/datasets.py'
2025-01-07T20:42:31,945   adding 'topaz/denoising/models.py'
2025-01-07T20:42:31,947   adding 'topaz/denoising/utils.py'
2025-01-07T20:42:32,027   adding 'topaz/gui/topaz.html'
2025-01-07T20:42:32,035   adding 'topaz/model/__init__.py'
2025-01-07T20:42:32,037   adding 'topaz/model/classifier.py'
2025-01-07T20:42:32,039   adding 'topaz/model/factory.py'
2025-01-07T20:42:32,041   adding 'topaz/model/generative.py'
2025-01-07T20:42:32,043   adding 'topaz/model/utils.py'
2025-01-07T20:42:32,045   adding 'topaz/model/features/__init__.py'
2025-01-07T20:42:32,047   adding 'topaz/model/features/basic.py'
2025-01-07T20:42:32,049   adding 'topaz/model/features/densenet.py'
2025-01-07T20:42:32,051   adding 'topaz/model/features/msnet.py'
2025-01-07T20:42:32,053   adding 'topaz/model/features/resnet.py'
2025-01-07T20:42:32,056   adding 'topaz/pretrained/denoise/affine_L1_v0.2.2.sav'
2025-01-07T20:42:32,363   adding 'topaz/pretrained/denoise/fcnn_L1_v0.2.2.sav'
2025-01-07T20:42:34,163   adding 'topaz/pretrained/denoise/unet-3d-10a-v0.2.4.sav'
2025-01-07T20:42:36,022   adding 'topaz/pretrained/denoise/unet-3d-20a-v0.2.4.sav'
2025-01-07T20:42:36,688   adding 'topaz/pretrained/denoise/unet_L2_v0.2.1.sav'
2025-01-07T20:42:37,398   adding 'topaz/pretrained/denoise/unet_L2_v0.2.2.sav'
2025-01-07T20:42:37,829   adding 'topaz/pretrained/denoise/unet_small_L1_v0.2.2.sav'
2025-01-07T20:42:38,126   adding 'topaz/pretrained/detector/resnet16_u32.sav'
2025-01-07T20:42:39,258   adding 'topaz/pretrained/detector/resnet16_u64.sav'
2025-01-07T20:42:39,505   adding 'topaz/pretrained/detector/resnet8_u32.sav'
2025-01-07T20:42:40,312   adding 'topaz/pretrained/detector/resnet8_u64.sav'
2025-01-07T20:42:40,346   adding 'topaz/transform/__init__.py'
2025-01-07T20:42:40,348   adding 'topaz/transform/scaled_gaussian_mixture.py'
2025-01-07T20:42:40,351   adding 'topaz/utils/__init__.py'
2025-01-07T20:42:40,353   adding 'topaz/utils/conversions.py'
2025-01-07T20:42:40,355   adding 'topaz/utils/files.py'
2025-01-07T20:42:40,357   adding 'topaz/utils/image.py'
2025-01-07T20:42:40,359   adding 'topaz/utils/picks.py'
2025-01-07T20:42:40,361   adding 'topaz/utils/printing.py'
2025-01-07T20:42:40,362   adding 'topaz/utils/star.py'
2025-01-07T20:42:40,365   adding 'topaz/utils/data/__init__.py'
2025-01-07T20:42:40,366   adding 'topaz/utils/data/coordinates.py'
2025-01-07T20:42:40,369   adding 'topaz/utils/data/loader.py'
2025-01-07T20:42:40,371   adding 'topaz/utils/data/memory_mapped_data.py'
2025-01-07T20:42:40,373   adding 'topaz/utils/data/partition.py'
2025-01-07T20:42:40,375   adding 'topaz/utils/data/sampler.py'
2025-01-07T20:42:40,377   adding 'topaz/utils/data/train_test_split_micrographs.py'
2025-01-07T20:42:40,384   adding 'topaz_em-0.3.6.dist-info/LICENSE'
2025-01-07T20:42:40,385   adding 'topaz_em-0.3.6.dist-info/METADATA'
2025-01-07T20:42:40,387   adding 'topaz_em-0.3.6.dist-info/WHEEL'
2025-01-07T20:42:40,388   adding 'topaz_em-0.3.6.dist-info/entry_points.txt'
2025-01-07T20:42:40,390   adding 'topaz_em-0.3.6.dist-info/top_level.txt'
2025-01-07T20:42:40,392   adding 'topaz_em-0.3.6.dist-info/RECORD'
2025-01-07T20:42:41,233   removing build/bdist.linux-armv7l/wheel
2025-01-07T20:42:41,407   Building wheel for topaz-em (setup.py): finished with status 'done'
2025-01-07T20:42:41,880   Created wheel for topaz-em: filename=topaz_em-0.3.6-py3-none-any.whl size=48203318 sha256=31bcbe65121c60b695fc172e31e788af269904cb6f023d6ea7acaadd03fd01ff
2025-01-07T20:42:41,882   Stored in directory: /tmp/pip-ephem-wheel-cache-xtbkub69/wheels/9e/af/c5/2a137d4714e29c8a049259f8c02b598ecbe7a5ea747075f934
2025-01-07T20:42:41,909 Successfully built topaz-em
2025-01-07T20:42:43,068 Removed build tracker: '/tmp/pip-build-tracker-5xealmq2'