2025-01-08T01:21:22,792 Created temporary directory: /tmp/pip-build-tracker-d3v3ko0l 2025-01-08T01:21:22,793 Initialized build tracking at /tmp/pip-build-tracker-d3v3ko0l 2025-01-08T01:21:22,794 Created build tracker: /tmp/pip-build-tracker-d3v3ko0l 2025-01-08T01:21:22,794 Entered build tracker: /tmp/pip-build-tracker-d3v3ko0l 2025-01-08T01:21:22,795 Created temporary directory: /tmp/pip-wheel-yclkuzkx 2025-01-08T01:21:22,800 Created temporary directory: /tmp/pip-ephem-wheel-cache-m3phnbt7 2025-01-08T01:21:22,843 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-01-08T01:21:22,846 2 location(s) to search for versions of rsalor: 2025-01-08T01:21:22,846 * https://pypi.org/simple/rsalor/ 2025-01-08T01:21:22,846 * https://www.piwheels.org/simple/rsalor/ 2025-01-08T01:21:22,847 Fetching project page and analyzing links: https://pypi.org/simple/rsalor/ 2025-01-08T01:21:22,847 Getting page https://pypi.org/simple/rsalor/ 2025-01-08T01:21:22,849 Found index url https://pypi.org/simple/ 2025-01-08T01:21:23,069 Fetched page https://pypi.org/simple/rsalor/ as application/vnd.pypi.simple.v1+json 2025-01-08T01:21:23,072 Found link https://files.pythonhosted.org/packages/4c/88/688f5845b4ef1317b9350e0169cadc8f069aae5f5cfb2e9e3d28c079d49f/rsalor-1.0.0.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.0 2025-01-08T01:21:23,073 Found link https://files.pythonhosted.org/packages/ad/f6/3a2db19446e614c8818a31979eec9de02172d444267c2546127eaafb8ec7/rsalor-1.0.1.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.1 2025-01-08T01:21:23,075 Found link https://files.pythonhosted.org/packages/a1/8a/229551ab183a598779cd9c321cca487312b08d8ed4bae31e11bd1b1d0942/rsalor-1.0.2.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.2 2025-01-08T01:21:23,076 Found link https://files.pythonhosted.org/packages/96/e5/20a6df74de1ddb6dd3e42f829a01e9d2dbd1b6a1ae2afdf624a55ef237e9/rsalor-1.0.3.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.3 2025-01-08T01:21:23,077 Found link https://files.pythonhosted.org/packages/3d/54/b124af313c0b5be736e7de7b8a6a57090536b7a2882187e170848bf91833/rsalor-1.0.4.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.4 2025-01-08T01:21:23,078 Found link https://files.pythonhosted.org/packages/de/c1/7154ea2617145fcc7416dce6ebe10d4f22769502ad607dbb70c70a51f9f0/rsalor-1.0.5.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.5 2025-01-08T01:21:23,078 Found link https://files.pythonhosted.org/packages/bf/2f/83db056a56488a01d0fc1c5e6cde5dbe28e63f51de1e4f7f79462476adbe/rsalor-1.0.6.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.6 2025-01-08T01:21:23,079 Found link https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz (from https://pypi.org/simple/rsalor/) (requires-python:>=3.9), version: 1.0.7 2025-01-08T01:21:23,080 Fetching project page and analyzing links: https://www.piwheels.org/simple/rsalor/ 2025-01-08T01:21:23,081 Getting page https://www.piwheels.org/simple/rsalor/ 2025-01-08T01:21:23,082 Found index url https://www.piwheels.org/simple/ 2025-01-08T01:21:23,243 Fetched page https://www.piwheels.org/simple/rsalor/ as text/html 2025-01-08T01:21:23,249 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,249 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e3279d8a29c034852404e40a88e5a61c477f9a63637a9739da274467d7924d77 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,250 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,251 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=6f58e8f5a8035e9b092496b9dcdeba8cc3c91ef252110af53ac7d76c0cb5a8ad (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,252 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,253 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=40f78c532a04175a32e1fd9a72a515a83beea8a291e338fe225d3e1cfece696a (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,253 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,254 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=47c7eeac52c88a3a1d281f21d38238c53adbcb66b322c2671eaa16eb6148d9c2 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,254 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,254 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=55870bdc10c81e6235372c309992b7ca3aa49d62b9c3c308be529f2173273886 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,255 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,256 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=a857a78d2d4f375568d2e0b4f90a458f066fd65e68ae70e7d0690448b8df2e75 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,256 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,257 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=45db75c4615213fc24eb488e675b401c53f2a40f6d7e44e8c790cbaba58fcd68 (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,257 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,258 Skipping link: No binaries permitted for rsalor: https://www.piwheels.org/simple/rsalor/rsalor-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=8d957e296375a86e1175ef8ff77210da71a8c05ccc1e114c203d084d5ce8c83c (from https://www.piwheels.org/simple/rsalor/) (requires-python:>=3.9) 2025-01-08T01:21:23,258 Skipping link: not a file: https://www.piwheels.org/simple/rsalor/ 2025-01-08T01:21:23,259 Skipping link: not a file: https://pypi.org/simple/rsalor/ 2025-01-08T01:21:23,277 Given no hashes to check 1 links for project 'rsalor': discarding no candidates 2025-01-08T01:21:23,279 Collecting rsalor==1.0.7 2025-01-08T01:21:23,281 Created temporary directory: /tmp/pip-unpack-dqlhf4jj 2025-01-08T01:21:23,500 Downloading rsalor-1.0.7.tar.gz (48 kB) 2025-01-08T01:21:23,638 Added rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-d3v3ko0l' 2025-01-08T01:21:23,640 Running setup.py (path:/tmp/pip-wheel-yclkuzkx/rsalor_5f9614564e3f4b728ee6c7cab02f7421/setup.py) egg_info for package rsalor 2025-01-08T01:21:23,641 Created temporary directory: /tmp/pip-pip-egg-info-zjjivypq 2025-01-08T01:21:23,642 Preparing metadata (setup.py): started 2025-01-08T01:21:23,643 Running command python setup.py egg_info 2025-01-08T01:21:24,746 running egg_info 2025-01-08T01:21:24,773 creating /tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info 2025-01-08T01:21:24,774 writing /tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/PKG-INFO 2025-01-08T01:21:24,777 writing dependency_links to /tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/dependency_links.txt 2025-01-08T01:21:24,779 writing requirements to /tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/requires.txt 2025-01-08T01:21:24,780 writing top-level names to /tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/top_level.txt 2025-01-08T01:21:24,782 writing manifest file '/tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/SOURCES.txt' 2025-01-08T01:21:24,899 reading manifest file '/tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/SOURCES.txt' 2025-01-08T01:21:24,901 reading manifest template 'MANIFEST.in' 2025-01-08T01:21:24,909 warning: no previously-included files found matching 'fig/*' 2025-01-08T01:21:24,909 warning: no previously-included files found matching 'src/*' 2025-01-08T01:21:24,910 warning: no previously-included files found matching 'tmp/*' 2025-01-08T01:21:24,910 warning: no previously-included files found matching '0_*' 2025-01-08T01:21:24,911 warning: no previously-included files found matching 'conda-env.yml' 2025-01-08T01:21:24,911 warning: no previously-included files found matching 'test_data/*' 2025-01-08T01:21:24,912 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-08T01:21:24,913 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-08T01:21:24,913 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-08T01:21:24,914 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-08T01:21:24,915 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-08T01:21:24,915 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-08T01:21:24,916 warning: no previously-included files matching '*.egg-info/*' found anywhere in distribution 2025-01-08T01:21:24,917 adding license file 'LICENCE' 2025-01-08T01:21:24,919 writing manifest file '/tmp/pip-pip-egg-info-zjjivypq/rsalor.egg-info/SOURCES.txt' 2025-01-08T01:21:25,027 Preparing metadata (setup.py): finished with status 'done' 2025-01-08T01:21:25,031 Source in /tmp/pip-wheel-yclkuzkx/rsalor_5f9614564e3f4b728ee6c7cab02f7421 has version 1.0.7, which satisfies requirement rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz 2025-01-08T01:21:25,032 Removed rsalor==1.0.7 from https://files.pythonhosted.org/packages/8a/7d/55cecf59f8776c7a448dccf78e34aa1b369d9653d34cd84eabb6672702f9/rsalor-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-d3v3ko0l' 2025-01-08T01:21:25,038 Created temporary directory: /tmp/pip-unpack-j5lu52op 2025-01-08T01:21:25,039 Created temporary directory: /tmp/pip-unpack-tiulcj4f 2025-01-08T01:21:25,040 Building wheels for collected packages: rsalor 2025-01-08T01:21:25,044 Created temporary directory: /tmp/pip-wheel-fg0rdduh 2025-01-08T01:21:25,045 Building wheel for rsalor (setup.py): started 2025-01-08T01:21:25,046 Destination directory: /tmp/pip-wheel-fg0rdduh 2025-01-08T01:21:25,047 Running command python setup.py bdist_wheel 2025-01-08T01:21:26,065 running bdist_wheel 2025-01-08T01:21:26,195 running build 2025-01-08T01:21:26,195 running build_py 2025-01-08T01:21:26,224 creating build/lib.linux-armv7l-cpython-311/rsalor 2025-01-08T01:21:26,226 copying rsalor/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor 2025-01-08T01:21:26,229 copying rsalor/msa.py -> build/lib.linux-armv7l-cpython-311/rsalor 2025-01-08T01:21:26,232 creating build/lib.linux-armv7l-cpython-311/rsalor/weights 2025-01-08T01:21:26,233 copying rsalor/weights/compute_weights.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights 2025-01-08T01:21:26,236 copying rsalor/weights/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/weights 2025-01-08T01:21:26,238 creating build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,239 copying rsalor/utils/CSV.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,242 copying rsalor/utils/ali_to_fasta.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,244 copying rsalor/utils/utils.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,246 copying rsalor/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,248 copying rsalor/utils/logger.py -> build/lib.linux-armv7l-cpython-311/rsalor/utils 2025-01-08T01:21:26,251 creating build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,252 copying rsalor/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,254 copying rsalor/sequence/mutation.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,257 copying rsalor/sequence/fasta_reader.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,259 copying rsalor/sequence/amino_acid.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,261 copying rsalor/sequence/pairwise_alignment.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,264 copying rsalor/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/sequence 2025-01-08T01:21:26,267 creating build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,268 copying rsalor/rsa/rsa_music.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,270 copying rsalor/rsa/rsa_solver.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,273 copying rsalor/rsa/rsa_biopython.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,275 copying rsalor/rsa/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,277 copying rsalor/rsa/rsa_dssp.py -> build/lib.linux-armv7l-cpython-311/rsalor/rsa 2025-01-08T01:21:26,279 creating build/lib.linux-armv7l-cpython-311/rsalor/structure 2025-01-08T01:21:26,281 copying rsalor/structure/residue.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure 2025-01-08T01:21:26,283 copying rsalor/structure/structure.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure 2025-01-08T01:21:26,286 copying rsalor/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/rsalor/structure 2025-01-08T01:21:26,293 running build_ext 2025-01-08T01:21:26,862 building 'rsalor.weights.lib_computeWeightsBackend' extension 2025-01-08T01:21:26,863 creating build/temp.linux-armv7l-cpython-311/rsalor/weights 2025-01-08T01:21:26,865 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/computeWeightsBackend.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o -std=c++11 -O3 2025-01-08T01:21:28,959 rsalor/weights/computeWeightsBackend.cpp: In function ‘float* computeWeightsBackend(const char*, unsigned int, unsigned int, float, bool, unsigned int, bool)’: 2025-01-08T01:21:28,960 rsalor/weights/computeWeightsBackend.cpp:38:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 2025-01-08T01:21:28,960 38 | for(int i = 0; i < msa_depth; i++) { // Copy content from local 2025-01-08T01:21:28,961 | ~~^~~~~~~~~~~ 2025-01-08T01:21:29,560 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irsalor/weights/include -I/usr/include/python3.11 -c rsalor/weights/msa.cpp -o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -std=c++11 -O3 2025-01-08T01:21:34,511 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/rsalor/weights/computeWeightsBackend.o build/temp.linux-armv7l-cpython-311/rsalor/weights/msa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -O3 2025-01-08T01:21:34,810 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-01-08T01:21:34,811 !! 2025-01-08T01:21:34,812 ******************************************************************************** 2025-01-08T01:21:34,812 Please avoid running ``setup.py`` directly. 2025-01-08T01:21:34,813 Instead, use pypa/build, pypa/installer or other 2025-01-08T01:21:34,813 standards-based tools. 2025-01-08T01:21:34,814 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-01-08T01:21:34,815 ******************************************************************************** 2025-01-08T01:21:34,816 !! 2025-01-08T01:21:34,816 self.initialize_options() 2025-01-08T01:21:34,837 installing to build/bdist.linux-armv7l/wheel 2025-01-08T01:21:34,837 running install 2025-01-08T01:21:34,861 running install_lib 2025-01-08T01:21:34,888 creating build/bdist.linux-armv7l/wheel 2025-01-08T01:21:34,890 creating build/bdist.linux-armv7l/wheel/rsalor 2025-01-08T01:21:34,892 creating build/bdist.linux-armv7l/wheel/rsalor/weights 2025-01-08T01:21:34,894 copying build/lib.linux-armv7l-cpython-311/rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T01:21:34,907 copying build/lib.linux-armv7l-cpython-311/rsalor/weights/compute_weights.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T01:21:34,910 copying build/lib.linux-armv7l-cpython-311/rsalor/weights/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/weights 2025-01-08T01:21:34,913 creating build/bdist.linux-armv7l/wheel/rsalor/utils 2025-01-08T01:21:34,914 copying build/lib.linux-armv7l-cpython-311/rsalor/utils/CSV.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T01:21:34,917 copying build/lib.linux-armv7l-cpython-311/rsalor/utils/ali_to_fasta.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T01:21:34,919 copying build/lib.linux-armv7l-cpython-311/rsalor/utils/utils.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T01:21:34,922 copying build/lib.linux-armv7l-cpython-311/rsalor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T01:21:34,924 copying build/lib.linux-armv7l-cpython-311/rsalor/utils/logger.py -> build/bdist.linux-armv7l/wheel/./rsalor/utils 2025-01-08T01:21:34,927 creating build/bdist.linux-armv7l/wheel/rsalor/sequence 2025-01-08T01:21:34,928 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,930 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/mutation.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,933 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,935 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/amino_acid.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,938 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/pairwise_alignment.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,941 copying build/lib.linux-armv7l-cpython-311/rsalor/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/sequence 2025-01-08T01:21:34,943 creating build/bdist.linux-armv7l/wheel/rsalor/rsa 2025-01-08T01:21:34,945 copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_music.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T01:21:34,947 copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_solver.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T01:21:34,949 copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_biopython.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T01:21:34,951 copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T01:21:34,953 copying build/lib.linux-armv7l-cpython-311/rsalor/rsa/rsa_dssp.py -> build/bdist.linux-armv7l/wheel/./rsalor/rsa 2025-01-08T01:21:34,957 creating build/bdist.linux-armv7l/wheel/rsalor/structure 2025-01-08T01:21:34,958 copying build/lib.linux-armv7l-cpython-311/rsalor/structure/residue.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T01:21:34,960 copying build/lib.linux-armv7l-cpython-311/rsalor/structure/structure.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T01:21:34,963 copying build/lib.linux-armv7l-cpython-311/rsalor/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor/structure 2025-01-08T01:21:34,965 copying build/lib.linux-armv7l-cpython-311/rsalor/__init__.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-08T01:21:34,967 copying build/lib.linux-armv7l-cpython-311/rsalor/msa.py -> build/bdist.linux-armv7l/wheel/./rsalor 2025-01-08T01:21:34,970 running install_egg_info 2025-01-08T01:21:35,004 running egg_info 2025-01-08T01:21:35,031 writing rsalor.egg-info/PKG-INFO 2025-01-08T01:21:35,035 writing dependency_links to rsalor.egg-info/dependency_links.txt 2025-01-08T01:21:35,037 writing requirements to rsalor.egg-info/requires.txt 2025-01-08T01:21:35,038 writing top-level names to rsalor.egg-info/top_level.txt 2025-01-08T01:21:35,076 reading manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-08T01:21:35,080 reading manifest template 'MANIFEST.in' 2025-01-08T01:21:35,086 warning: no previously-included files found matching 'fig/*' 2025-01-08T01:21:35,087 warning: no previously-included files found matching 'src/*' 2025-01-08T01:21:35,089 warning: no previously-included files found matching 'tmp/*' 2025-01-08T01:21:35,090 warning: no previously-included files found matching '0_*' 2025-01-08T01:21:35,091 warning: no previously-included files found matching 'conda-env.yml' 2025-01-08T01:21:35,092 warning: no previously-included files found matching 'test_data/*' 2025-01-08T01:21:35,093 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-01-08T01:21:35,094 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2025-01-08T01:21:35,095 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-01-08T01:21:35,097 warning: no previously-included files matching '*.a' found anywhere in distribution 2025-01-08T01:21:35,098 warning: no previously-included files matching '*.o' found anywhere in distribution 2025-01-08T01:21:35,099 warning: no previously-included files matching 'rsalor/weights/build/*' found anywhere in distribution 2025-01-08T01:21:35,101 adding license file 'LICENCE' 2025-01-08T01:21:35,105 writing manifest file 'rsalor.egg-info/SOURCES.txt' 2025-01-08T01:21:35,106 Copying rsalor.egg-info to build/bdist.linux-armv7l/wheel/./rsalor-1.0.7-py3.11.egg-info 2025-01-08T01:21:35,117 running install_scripts 2025-01-08T01:21:35,173 creating build/bdist.linux-armv7l/wheel/rsalor-1.0.7.dist-info/WHEEL 2025-01-08T01:21:35,175 creating '/tmp/pip-wheel-fg0rdduh/rsalor-1.0.7-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-01-08T01:21:35,177 adding 'rsalor/__init__.py' 2025-01-08T01:21:35,182 adding 'rsalor/msa.py' 2025-01-08T01:21:35,184 adding 'rsalor/rsa/__init__.py' 2025-01-08T01:21:35,186 adding 'rsalor/rsa/rsa_biopython.py' 2025-01-08T01:21:35,187 adding 'rsalor/rsa/rsa_dssp.py' 2025-01-08T01:21:35,189 adding 'rsalor/rsa/rsa_music.py' 2025-01-08T01:21:35,191 adding 'rsalor/rsa/rsa_solver.py' 2025-01-08T01:21:35,193 adding 'rsalor/sequence/__init__.py' 2025-01-08T01:21:35,195 adding 'rsalor/sequence/amino_acid.py' 2025-01-08T01:21:35,197 adding 'rsalor/sequence/fasta_reader.py' 2025-01-08T01:21:35,198 adding 'rsalor/sequence/mutation.py' 2025-01-08T01:21:35,200 adding 'rsalor/sequence/pairwise_alignment.py' 2025-01-08T01:21:35,202 adding 'rsalor/sequence/sequence.py' 2025-01-08T01:21:35,204 adding 'rsalor/structure/__init__.py' 2025-01-08T01:21:35,205 adding 'rsalor/structure/residue.py' 2025-01-08T01:21:35,206 adding 'rsalor/structure/structure.py' 2025-01-08T01:21:35,210 adding 'rsalor/utils/CSV.py' 2025-01-08T01:21:35,211 adding 'rsalor/utils/__init__.py' 2025-01-08T01:21:35,213 adding 'rsalor/utils/ali_to_fasta.py' 2025-01-08T01:21:35,214 adding 'rsalor/utils/logger.py' 2025-01-08T01:21:35,216 adding 'rsalor/utils/utils.py' 2025-01-08T01:21:35,217 adding 'rsalor/weights/__init__.py' 2025-01-08T01:21:35,219 adding 'rsalor/weights/compute_weights.py' 2025-01-08T01:21:35,312 adding 'rsalor/weights/lib_computeWeightsBackend.cpython-311-arm-linux-gnueabihf.so' 2025-01-08T01:21:35,317 adding 'rsalor-1.0.7.dist-info/LICENCE' 2025-01-08T01:21:35,318 adding 'rsalor-1.0.7.dist-info/METADATA' 2025-01-08T01:21:35,319 adding 'rsalor-1.0.7.dist-info/WHEEL' 2025-01-08T01:21:35,320 adding 'rsalor-1.0.7.dist-info/top_level.txt' 2025-01-08T01:21:35,321 adding 'rsalor-1.0.7.dist-info/RECORD' 2025-01-08T01:21:35,325 removing build/bdist.linux-armv7l/wheel 2025-01-08T01:21:35,476 Building wheel for rsalor (setup.py): finished with status 'done' 2025-01-08T01:21:35,481 Created wheel for rsalor: filename=rsalor-1.0.7-cp311-cp311-linux_armv7l.whl size=226427 sha256=b9cffb588a6b01d8683152e56520c60e5689590a45702a3349d8c71a35b82b9a 2025-01-08T01:21:35,482 Stored in directory: /tmp/pip-ephem-wheel-cache-m3phnbt7/wheels/bb/cf/e6/3e75c86d2fce7528900b5b90ee29c0b3d2ed1a779d3df82782 2025-01-08T01:21:35,493 Successfully built rsalor 2025-01-08T01:21:35,503 Removed build tracker: '/tmp/pip-build-tracker-d3v3ko0l'